pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MSRB3   
Synonyms DFNB74
Description methionine sulfoxide reductase B3
Transcript NM_001031679   
Other Transcripts NM_198080   
Expression
Putative miRNA Targets on MSRB3
3'UTR of MSRB3
(miRNA target sites are highlighted)
>MSRB3|NM_001031679|3'UTR
   1 AGTAATGGAGAGTGATGGAAACAAAGTGTACTTAATGCACAGCTTATTAAAAAAATCAAAATTGTTATCTTAATAGATAT
  81 ATTTTTTCAAAAACTATAAGGGCAGTTTTGTGCTATTGATATTTTTTCTTCTTTTGCTTAAACAGAAGCCCTGGCCATCC
 161 ATGTATTTTGCAATTGACTAGATCAAGAACTGTTTATAGCTTTAGCAAATGGAGACAGCTTTGTGAAACTTCTTCACAAG
 241 CCACTTATACCCTTTGGCATTCTTTTCTTTGAGCACATGGCTTCTTTTGCAGTTTTTCCCCCTTTGATTCAGAAGCAGAG
 321 GGTTCATGGTCTTCAAACATGAAAATAGAGATCTCCTCTGCAGTGTAGAGACCAGAGCTGGGCAGTGCAGGGCATGGAGA
 401 CCTGCAAGACACATGGCCTTGAGGCCTTTGCACAGACCCACCTAAGATAAGGTTGGAGTGATGTTTTAATGAGACTGTTC
 481 AGCTTTGTGGAAAGTTTGAGCTAAGGTCATTTTTTTTTTTCTCACTGAAAGGGTGTGAAGGTCTAAAGTCTTTCCTTATG
 561 TTAAATTGTTGCCAGATCCAAAGGGGCATACTGAGTGTTGTGGCAGAGAAGTAAACATTACCACACTGTTAGGCCTTTAT
 641 TTTATTTTATTTTCCATCGAAAGCATTGGAGGCCCAGTGCAATGGCTCACGCCTGTGATCCCAGCACTTTGGGAGGCCAA
 721 GGCGGGTGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACGAAA
 801 AATTAGCCAGGCGTGGTGGTGGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAA
 881 GGCGGAGCTTGCAGTTAGCCGAGATCATGCCACTGCACTCCAGCCTACATGACAATGTGACACTCCATCTCAAAAAATAA
 961 TAATAATAACAATATAAGAACTAGCTGGGCATGGTGGCGCATGCATGTAGTCCCAGCTACTCCTGAGGCTCAGTCAGGAG
1041 AATCGCTTGAACTTGGGAGGCGGAGGTTGCAGTGAGCTGAGCTCATACCACTGCACTCCAGCCTGAACAGAGTGAGATCC
1121 TGTCAAAAAAGAAAAGAAAAAGAAAGCAGCATTCAAATGTAAGACAACTGTAAAATATTGAGCCCCACTTGGTCTAAAAT
1201 TCAAAAAGAAGAACGCCTGTCCATCGCCTTTTTATAAGTCCTTCTCTCCACACCTAAAAGCAGCTGCAGCTGGAAGGGCA
1281 CAAATTCCACTGTGTAAAATAAAATATTAGGGGCAACACACTTCATCAAGGCAGCAGGAATGAGAGAGAGCAGAGAAGAT
1361 CAAGGATGAAGTCTTGGGTACTGAAAAATTCAGTGCTGGGCAGAAAAACTGACAGGGCAGTACAAGTAACAAACAGAATC
1441 CAAGTGGGGTGGCCCTTGTGCACAGAGCTCCAGGTGACCTCTGGAGAGACATGGGCATTCACATGGAAAGCTAAAACGGA
1521 AGCTCAAGTTTCATACTCAACATAATCTTCTGTGTGACAAAGGACAAGCCATGTAGCCTCTCTGTGCCTATTTCTTCATG
1601 CATAAACTGGGACTCATAATATTTGTAAAATGTATTGATACTCTCAGGGCAAATTCACTATATTGCTATACAGTTGAGAT
1681 CAGTGTTGTAAAATTAAACTGATCTGGTTCTAATTGCCTCAAAGGCCAAAGCCCAGGCATTTGAAATGGAAAGAAGCAGA
1761 GAGGAGGCTGACTTAGCTGATTGGTATGGAAACAGTTGGGCCAAGAGCCAGAATTTCCCTTTGTAGCAACACGGCTAGTT
1841 TTACTTTGAGAAGCTCTGCTCAGCTGCTTTATAACATTAAGTCTGGCGGAATGGATGTCACTGTGCACAATAAAGTTTTC
1921 ACAAGTATAAACAATGGTGATGTAAGTCAACATTGCTGTAGCCAGGTGTGAAGGTTGTATGGTGTGTGACGAATGTACAT
2001 CATGTTTGTAGGTTTGGATGCTAATCTTGAATTGTAGTTTAAAAAATACGTATTTTTGTAACTCTTTGAAAGTTTATGAA
2081 GACTGACAGCTTTCCTTGTAAGCACTAAGAGAAAAAAAAGAAAGAGGGACATTTGACAATTTTAAAGAAACAACAAGAAA
2161 TTAGAATGAAAATCTGTGACAAACAGCGTCAGTGTGGCCATGTCCACATTCCTACATGTCTCTCTCTACAAGCACCTCTC
2241 TAAGAAGCCTGACATCCCGGTGGACTCTTTATAGTCATGTACACTTGATTCCAGATGAGCTCTGGTCTTATCTGGATGCT
2321 CAGATAAGAGGTTTCTATCTGAGCATCCAGATGTTCCCTCAGGTTCCAAGACATTTCACCCCAGGCCCTGGGTTCACTCT
2401 GGAATTCGTAGGCTTCACGTCTCTCTAGAAATGACGTGTAAAATTTAAGACCAGACCTCAGCCATCAGCGTCCAGACCAT
2481 CCTAGAAGTCTTTCCCAATCTCACAGAGAAAGCCCTAGTATTTCCCAGTGACCCCAGGATTCCACGTTGGGGTGGCCAAA
2561 GAAATAGGTCTCTCAGGGCTTTGCCACAGCCTCCAGCCCATCCTTCAGAGGCACACACAGCACCTCTCGGCTGCTCCAGC
2641 TCTGTAGGATAGCCTCCCCTGGGGTCCGTGGGACGCGGGCCACAGTGTTGAGGTAGACAAGGAGGATCAGTGAGAGGCCT
2721 CTTCCCTCTCCACAGAGACTGGATTGTCATTGTTCCTTCATTTATATCGTAGGGCTTAACATTTCACTCAAAAAAAAGCC
2801 CCTCTTTTTCTAATCCTTAGTCTTTGTTTCAAGGAAAGCCAGTTTTTCTTCTACCACATTTTCCAGGATCGACTTTAAGA
2881 AAAATGCAACATCTATTGAAAAAAAGTGGGGTGTATGCATGTGGTTTAATTCCAGATTGCTTTTGGGTTTAAGTGGTATC
2961 AAATTTCAGTATATTTCTGTCTTATGTGAAAGAAATATATTACTAAAACGTCAGTGAGCAATAATGTCAGCTGTCAAGCA
3041 CTAGATTTATTTTTGCAGGATATGGAGTGCAATGAACTGAGTCAATATGGCAAGGTGTATGTGATCTGTGGGAGTTATGC
3121 CATTTAACATAGGAAGTGCATGGGACTTTCCCTCTCTGCACTCCAGCTCTTACTGTACCATTAGAAGATGCAGAATTCTG
3201 TTGGTGTGCAAAAAGTATAGCCTTACATTCAAGCAGAATGGATCTGAAGAAAGCAGCAATATCTGTTACTAGAGAACATT
3281 CCCATGTGTTTAAACTCTTCACTTCTTAGATGCATTTAAATTCTTAATGCAAATGACGTAGCAATTTGAAAACTTCTCCG
3361 TATTACTTGTGTTTAAAATGTCTTGCTTTAAATACAAAACAAATGGTAAAGGGGATTATCTTTTGTTTAGATGGTTAAAT
3441 ATTATTTTTGCCTTAGATAGCTTTGTAATAATTTTTCTCCAGACAGTTCAACACTTTTGAAAAATGACATGAATTTTCAT
3521 TAAAAACCCTTTTCCTATGTTTATTGTATACAAGAATTATGCAATAAAATTTCTTTATAAAAATAAAAAAAAAAAAAAAA
3601 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            :|::| ||||||||||||  
Target 5' atGGTGAAACCCCGTCTCTAct 3'
767 - 788 160.00 -21.80
2
miRNA  3' ucucGUUCUGGGGCAGAGAUUu 5'
              |||| | || ||||||| 
Target 5' tctaCAAG-CACC-TCTCTAAg 3'
2225 - 2244 156.00 -14.90
3
miRNA  3' ucucgUUCUGG--GGCAGAGAUUu 5'
               ||| ||  |: |:||||| 
Target 5' aaaaaAAGCCCCTCTTTTTCTAAt 3'
2791 - 2814 139.00 -11.33
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30128273 9 COSMIC
COSN30170831 9 COSMIC
COSN30500336 10 COSMIC
COSN30152051 11 COSMIC
COSN30185373 18 COSMIC
COSN13412828 33 COSMIC
COSN26985176 34 COSMIC
COSN30139588 50 COSMIC
COSN30480388 58 COSMIC
COSN30187703 81 COSMIC
COSN4703489 298 COSMIC
COSN22223644 373 COSMIC
COSN5325907 430 COSMIC
COSN20109782 521 COSMIC
COSN1580990 999 COSMIC
COSN28232423 1234 COSMIC
COSN22573789 1362 COSMIC
COSN25514221 1675 COSMIC
COSN21866758 1759 COSMIC
COSN16794054 1817 COSMIC
COSN29868619 1876 COSMIC
COSN16795666 1890 COSMIC
COSN9568004 2010 COSMIC
COSN26414491 2013 COSMIC
COSN20109787 2067 COSMIC
COSN29834869 2098 COSMIC
COSN26215760 2426 COSMIC
COSN16160724 2597 COSMIC
COSN32058346 2675 COSMIC
COSN20997588 2729 COSMIC
COSN6536998 2840 COSMIC
COSN7377852 2878 COSMIC
COSN25300848 2914 COSMIC
COSN24899103 3094 COSMIC
COSN5718254 3340 COSMIC
COSN7377853 3457 COSMIC
COSN18828695 3535 COSMIC
COSN23059746 3541 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs770177032 9 dbSNP
rs1400006624 11 dbSNP
rs773333741 13 dbSNP
rs762886923 17 dbSNP
rs1459559386 19 dbSNP
rs1324721525 20 dbSNP
rs1394247106 29 dbSNP
rs1447919923 32 dbSNP
rs766489653 34 dbSNP
rs1422249626 39 dbSNP
rs546088816 40 dbSNP
rs760061070 43 dbSNP
rs1313609287 46 dbSNP
rs770116611 49 dbSNP
rs773909687 49 dbSNP
rs901998272 50 dbSNP
rs1220381936 56 dbSNP
rs1449608156 59 dbSNP
rs1259785950 64 dbSNP
rs531630418 70 dbSNP
rs1042614887 79 dbSNP
rs1169780290 81 dbSNP
rs1369820207 82 dbSNP
rs904146752 97 dbSNP
rs1436060490 106 dbSNP
rs1392691532 112 dbSNP
rs369448343 120 dbSNP
rs1295318130 125 dbSNP
rs1466583939 130 dbSNP
rs1400289734 140 dbSNP
rs1368614693 143 dbSNP
rs1037936463 148 dbSNP
rs1434331709 150 dbSNP
rs1425277471 151 dbSNP
rs1034098241 156 dbSNP
rs1476859755 174 dbSNP
rs895207326 185 dbSNP
rs750720124 193 dbSNP
rs899450186 194 dbSNP
rs765448076 210 dbSNP
rs559405214 212 dbSNP
rs951132908 216 dbSNP
rs1007939195 229 dbSNP
rs1313970986 235 dbSNP
rs1019791492 239 dbSNP
rs1025085825 244 dbSNP
rs1218840754 247 dbSNP
rs751038475 248 dbSNP
rs1339513532 253 dbSNP
rs1369118640 258 dbSNP
rs963717755 259 dbSNP
rs1448070997 260 dbSNP
rs975502415 266 dbSNP
rs1026203541 275 dbSNP
rs925204959 281 dbSNP
rs1174801022 290 dbSNP
rs1412386941 293 dbSNP
rs548789204 294 dbSNP
rs1487956560 298 dbSNP
rs1438784829 326 dbSNP
rs1189087707 327 dbSNP
rs910225845 328 dbSNP
rs1483562510 329 dbSNP
rs1251596760 332 dbSNP
rs372309386 337 dbSNP
rs957968425 340 dbSNP
rs1451685580 342 dbSNP
rs1189834222 346 dbSNP
rs551426975 353 dbSNP
rs1241168817 354 dbSNP
rs1353378919 385 dbSNP
rs1408674410 386 dbSNP
rs374708034 387 dbSNP
rs976216522 397 dbSNP
rs923061304 400 dbSNP
rs1301747234 404 dbSNP
rs1412305653 418 dbSNP
rs1361909784 424 dbSNP
rs1158819464 426 dbSNP
rs945539551 427 dbSNP
rs1167011359 430 dbSNP
rs1042539901 436 dbSNP
rs1166723021 441 dbSNP
rs1424316927 445 dbSNP
rs925498011 448 dbSNP
rs936942575 449 dbSNP
rs1265456773 450 dbSNP
rs1217572378 451 dbSNP
rs1488114557 453 dbSNP
rs7316024 454 dbSNP
rs1247525901 455 dbSNP
rs1435515240 464 dbSNP
rs913773561 465 dbSNP
rs534222925 466 dbSNP
rs1322699022 476 dbSNP
rs533750724 477 dbSNP
rs1232017605 480 dbSNP
rs1362981793 483 dbSNP
rs1341787894 485 dbSNP
rs1298326133 488 dbSNP
rs1398990736 493 dbSNP
rs1229895403 499 dbSNP
rs1382407223 505 dbSNP
rs1312883000 509 dbSNP
rs10657740 510 dbSNP
rs1162641721 510 dbSNP
rs1478780795 510 dbSNP
rs397750525 510 dbSNP
rs1320588083 512 dbSNP
rs949200603 514 dbSNP
rs1194549372 515 dbSNP
rs1269606640 520 dbSNP
rs895124837 521 dbSNP
rs1465032058 522 dbSNP
rs1211870431 523 dbSNP
rs1209785557 525 dbSNP
rs1247727896 526 dbSNP
rs1013627890 527 dbSNP
rs1474723472 534 dbSNP
rs1212327576 537 dbSNP
rs1046910037 543 dbSNP
rs541935400 544 dbSNP
rs1278267667 545 dbSNP
rs1217556107 549 dbSNP
rs1324179514 551 dbSNP
rs1302883101 554 dbSNP
rs1414703233 555 dbSNP
rs926720527 558 dbSNP
rs1163110275 559 dbSNP
rs1391135589 561 dbSNP
rs544777420 566 dbSNP
rs1319648597 570 dbSNP
rs553872607 586 dbSNP
rs899417625 589 dbSNP
rs1450208237 591 dbSNP
rs993291897 594 dbSNP
rs1371427142 599 dbSNP
rs1026172382 613 dbSNP
rs951916116 617 dbSNP
rs1252742211 619 dbSNP
rs1377876014 624 dbSNP
rs993752065 628 dbSNP
rs550110564 629 dbSNP
rs1047969328 634 dbSNP
rs1006540730 636 dbSNP
rs1198587638 636 dbSNP
rs1230949660 636 dbSNP
rs1289640275 639 dbSNP
rs1017547552 642 dbSNP
rs964726541 651 dbSNP
rs752114743 659 dbSNP
rs1009492281 660 dbSNP
rs922987685 663 dbSNP
rs563512653 664 dbSNP
rs1408165990 668 dbSNP
rs978206151 669 dbSNP
rs1212906468 670 dbSNP
rs925466855 684 dbSNP
rs964157019 689 dbSNP
rs936882803 691 dbSNP
rs1483180245 692 dbSNP
rs1185937776 704 dbSNP
rs532683559 708 dbSNP
rs1473049014 711 dbSNP
rs1436621199 715 dbSNP
rs1032043312 720 dbSNP
rs1200600671 721 dbSNP
rs1826662 723 dbSNP
rs957937247 724 dbSNP
rs1826661 725 dbSNP
rs1241896255 727 dbSNP
rs1354095402 729 dbSNP
rs1415938321 735 dbSNP
rs1439901761 736 dbSNP
rs1336244710 741 dbSNP
rs913826055 742 dbSNP
rs1334506844 746 dbSNP
rs552439271 748 dbSNP
rs970526892 749 dbSNP
rs1311241972 754 dbSNP
rs982379813 755 dbSNP
rs565766487 763 dbSNP
rs938130930 764 dbSNP
rs977404682 776 dbSNP
rs1381280463 777 dbSNP
rs1309327256 781 dbSNP
rs1469047967 783 dbSNP
rs1370636057 789 dbSNP
rs1188868843 794 dbSNP
rs528475443 797 dbSNP
rs879379319 798 dbSNP
rs929317895 804 dbSNP
rs1221931769 805 dbSNP
rs1047938334 808 dbSNP
rs141332589 813 dbSNP
rs944873136 814 dbSNP
rs1244008478 816 dbSNP
rs1221319142 818 dbSNP
rs567381826 824 dbSNP
rs1311184560 830 dbSNP
rs1402056776 835 dbSNP
rs372753576 842 dbSNP
rs1361478859 845 dbSNP
rs568473604 846 dbSNP
rs1279736847 850 dbSNP
rs1039639098 865 dbSNP
rs1312128941 865 dbSNP
rs899571627 869 dbSNP
rs767035804 870 dbSNP
rs1209285442 872 dbSNP
rs537502665 877 dbSNP
rs1032095280 878 dbSNP
rs368258413 884 dbSNP
rs536384971 885 dbSNP
rs1241093671 889 dbSNP
rs145114735 901 dbSNP
rs887594229 902 dbSNP
rs553745072 908 dbSNP
rs1138896 909 dbSNP
rs1479105027 910 dbSNP
rs576003272 914 dbSNP
rs553281572 916 dbSNP
rs981962268 922 dbSNP
rs1291498534 930 dbSNP
rs1220474998 940 dbSNP
rs1033970490 941 dbSNP
rs868607221 953 dbSNP
rs1424130637 956 dbSNP
rs1428923347 956 dbSNP
rs1432846200 968 dbSNP
rs36066567 970 dbSNP
rs1170404174 974 dbSNP
rs959238386 976 dbSNP
rs997550939 977 dbSNP
rs115113745 979 dbSNP
rs71450813 981 dbSNP
rs1326228226 982 dbSNP
rs1465640353 991 dbSNP
rs920693394 996 dbSNP
rs929285121 999 dbSNP
rs983439197 1000 dbSNP
rs1247045163 1002 dbSNP
rs1192840525 1004 dbSNP
rs966403972 1005 dbSNP
rs1259846655 1006 dbSNP
rs1199215863 1020 dbSNP
rs1232792089 1022 dbSNP
rs977797589 1032 dbSNP
rs1213000274 1041 dbSNP
rs777338367 1045 dbSNP
rs749031181 1046 dbSNP
rs944986874 1052 dbSNP
rs1270886480 1060 dbSNP
rs1039198238 1062 dbSNP
rs757077146 1063 dbSNP
rs936189855 1068 dbSNP
rs1053502865 1070 dbSNP
rs141632557 1080 dbSNP
rs778756922 1081 dbSNP
rs1353382705 1089 dbSNP
rs1167765604 1090 dbSNP
rs1452313298 1092 dbSNP
rs982081408 1096 dbSNP
rs191769503 1097 dbSNP
rs906450252 1100 dbSNP
rs150334283 1112 dbSNP
rs1142467 1113 dbSNP
rs1232355564 1116 dbSNP
rs865956531 1121 dbSNP
rs1202599940 1125 dbSNP
rs959439272 1126 dbSNP
rs1281238530 1137 dbSNP
rs941823388 1142 dbSNP
rs1405654620 1148 dbSNP
rs1311976489 1150 dbSNP
rs1322469012 1151 dbSNP
rs1224805260 1159 dbSNP
rs1373321657 1162 dbSNP
rs973230134 1165 dbSNP
rs1449502591 1174 dbSNP
rs1375543185 1181 dbSNP
rs542013992 1181 dbSNP
rs1311856238 1186 dbSNP
rs1432520509 1189 dbSNP
rs1381914154 1193 dbSNP
rs1394267853 1208 dbSNP
rs1439188091 1209 dbSNP
rs1027676971 1215 dbSNP
rs1418424442 1216 dbSNP
rs1183544671 1220 dbSNP
rs1484250641 1222 dbSNP
rs563576577 1226 dbSNP
rs532547309 1227 dbSNP
rs911919638 1235 dbSNP
rs1366562381 1240 dbSNP
rs1288585585 1245 dbSNP
rs1240296764 1253 dbSNP
rs900392644 1262 dbSNP
rs997455224 1267 dbSNP
rs1030234142 1270 dbSNP
rs1355506006 1284 dbSNP
rs546137831 1297 dbSNP
rs975364759 1307 dbSNP
rs1362134873 1315 dbSNP
rs922220069 1321 dbSNP
rs1452708840 1335 dbSNP
rs936137652 1338 dbSNP
rs1475519812 1339 dbSNP
rs1032018263 1354 dbSNP
rs1474347049 1362 dbSNP
rs559610995 1365 dbSNP
rs1205960585 1374 dbSNP
rs1485722673 1384 dbSNP
rs991372875 1401 dbSNP
rs1272763296 1404 dbSNP
rs1224397992 1410 dbSNP
rs1336185149 1419 dbSNP
rs780383126 1425 dbSNP
rs1230848572 1435 dbSNP
rs914988949 1445 dbSNP
rs1210394501 1453 dbSNP
rs971333859 1454 dbSNP
rs982344425 1456 dbSNP
rs1461882291 1460 dbSNP
rs1248343418 1471 dbSNP
rs1393730961 1490 dbSNP
rs137888885 1492 dbSNP
rs548298704 1493 dbSNP
rs768836413 1496 dbSNP
rs1003225317 1503 dbSNP
rs568412720 1507 dbSNP
rs1194128973 1514 dbSNP
rs1055429172 1518 dbSNP
rs774470121 1519 dbSNP
rs1162074473 1524 dbSNP
rs1193348539 1528 dbSNP
rs9668091 1530 dbSNP
rs1027478167 1531 dbSNP
rs900319821 1553 dbSNP
rs1319337014 1554 dbSNP
rs950799752 1555 dbSNP
rs1004881930 1567 dbSNP
rs183577315 1576 dbSNP
rs570686433 1579 dbSNP
rs966411244 1583 dbSNP
rs773592464 1585 dbSNP
rs1303130201 1599 dbSNP
rs1441280133 1604 dbSNP
rs1051629029 1612 dbSNP
rs1258241081 1612 dbSNP
rs1389820866 1615 dbSNP
rs974787422 1616 dbSNP
rs922167297 1617 dbSNP
rs1398697708 1625 dbSNP
rs999108463 1630 dbSNP
rs1461667491 1636 dbSNP
rs75449038 1638 dbSNP
rs1175769975 1643 dbSNP
rs893519648 1645 dbSNP
rs1252800364 1650 dbSNP
rs990317007 1651 dbSNP
rs913366409 1660 dbSNP
rs1192276542 1664 dbSNP
rs1011986342 1667 dbSNP
rs1023830843 1669 dbSNP
rs763340068 1672 dbSNP
rs541289188 1686 dbSNP
rs1479374911 1688 dbSNP
rs149464824 1691 dbSNP
rs970919792 1696 dbSNP
rs1234601324 1707 dbSNP
rs1346838975 1708 dbSNP
rs561015496 1716 dbSNP
rs1242205863 1719 dbSNP
rs982313671 1719 dbSNP
rs115857920 1722 dbSNP
rs1328105618 1729 dbSNP
rs1390834896 1733 dbSNP
rs144110975 1734 dbSNP
rs951610083 1736 dbSNP
rs1435618006 1737 dbSNP
rs1054826764 1755 dbSNP
rs984096263 1757 dbSNP
rs909896141 1758 dbSNP
rs964419439 1782 dbSNP
rs1364816651 1783 dbSNP
rs555084400 1785 dbSNP
rs1292709894 1787 dbSNP
rs575163066 1793 dbSNP
rs1259045999 1797 dbSNP
rs188116492 1802 dbSNP
rs1485171726 1804 dbSNP
rs116191610 1812 dbSNP
rs1230401994 1813 dbSNP
rs577064802 1827 dbSNP
rs922717174 1830 dbSNP
rs1048968817 1833 dbSNP
rs1236827835 1834 dbSNP
rs1334022939 1838 dbSNP
rs562974136 1839 dbSNP
rs1415615031 1840 dbSNP
rs1375140631 1842 dbSNP
rs1311300397 1846 dbSNP
rs886237410 1853 dbSNP
rs1258209103 1855 dbSNP
rs1442892228 1857 dbSNP
rs1004684087 1877 dbSNP
rs935261726 1882 dbSNP
rs1419369703 1887 dbSNP
rs1188125618 1888 dbSNP
rs1019421199 1889 dbSNP
rs1254885969 1891 dbSNP
rs1194906252 1902 dbSNP
rs1186609513 1903 dbSNP
rs867989275 1908 dbSNP
rs1283343588 1913 dbSNP
rs1054140983 1925 dbSNP
rs893453058 1941 dbSNP
rs546000191 1942 dbSNP
rs1233903999 1944 dbSNP
rs1354921332 1949 dbSNP
rs1473400893 1955 dbSNP
rs1044810809 1959 dbSNP
rs368167202 1964 dbSNP
rs77689262 1967 dbSNP
rs1318140291 1980 dbSNP
rs1399458646 1981 dbSNP
rs760079835 1984 dbSNP
rs879246498 1991 dbSNP
rs957363379 1992 dbSNP
rs767950094 2000 dbSNP
rs1405026731 2003 dbSNP
rs1460422911 2009 dbSNP
rs74327899 2012 dbSNP
rs913500193 2017 dbSNP
rs1169253300 2020 dbSNP
rs879120343 2021 dbSNP
rs542471981 2038 dbSNP
rs3553 2039 dbSNP
rs1025837932 2042 dbSNP
rs1036 2047 dbSNP
rs1312369630 2048 dbSNP
rs11545383 2049 dbSNP
rs140623821 2050 dbSNP
rs927689057 2051 dbSNP
rs1005795567 2065 dbSNP
rs1216533024 2070 dbSNP
rs1340397772 2077 dbSNP
rs1017629697 2078 dbSNP
rs1373675837 2083 dbSNP
rs1316506960 2084 dbSNP
rs1327114961 2096 dbSNP
rs753056871 2098 dbSNP
rs1391621258 2102 dbSNP
rs1236653918 2104 dbSNP
rs939147878 2105 dbSNP
rs1257469692 2106 dbSNP
rs1345643440 2107 dbSNP
rs763695071 2109 dbSNP
rs1254859368 2110 dbSNP
rs1165806331 2112 dbSNP
rs192845564 2112 dbSNP
rs796162415 2114 dbSNP
rs1455385629 2117 dbSNP
rs975853672 2121 dbSNP
rs1443480550 2123 dbSNP
rs1192899938 2127 dbSNP
rs753494807 2129 dbSNP
rs930317671 2130 dbSNP
rs922671899 2143 dbSNP
rs1206627328 2145 dbSNP
rs528310533 2149 dbSNP
rs79579982 2151 dbSNP
rs1048934654 2153 dbSNP
rs955474324 2154 dbSNP
rs886374969 2155 dbSNP
rs987236334 2169 dbSNP
rs923761748 2178 dbSNP
rs1416902167 2187 dbSNP
rs940499600 2188 dbSNP
rs756989459 2189 dbSNP
rs901924634 2212 dbSNP
rs935187289 2214 dbSNP
rs1180119000 2216 dbSNP
rs1053705104 2217 dbSNP
rs1379678977 2219 dbSNP
rs12231298 2221 dbSNP
rs1029501799 2222 dbSNP
rs147404971 2223 dbSNP
rs1045134145 2229 dbSNP
rs1011602774 2232 dbSNP
rs1020530833 2235 dbSNP
rs967653362 2238 dbSNP
rs982008558 2241 dbSNP
rs1373750777 2245 dbSNP
rs1035900613 2248 dbSNP
rs1486808944 2251 dbSNP
rs114310151 2252 dbSNP
rs1372877966 2257 dbSNP
rs139709586 2259 dbSNP
rs74467823 2260 dbSNP
rs1331466208 2261 dbSNP
rs1371948985 2266 dbSNP
rs1233524297 2268 dbSNP
rs1285970478 2268 dbSNP
rs1375602072 2276 dbSNP
rs566625815 2294 dbSNP
rs1464309412 2303 dbSNP
rs916341409 2306 dbSNP
rs1344160466 2311 dbSNP
rs1205296440 2318 dbSNP
rs1407330411 2322 dbSNP
rs1180189776 2323 dbSNP
rs762869105 2324 dbSNP
rs1258421824 2325 dbSNP
rs535418331 2344 dbSNP
rs779909484 2345 dbSNP
rs549239443 2363 dbSNP
rs940659233 2364 dbSNP
rs1029631262 2367 dbSNP
rs955402079 2371 dbSNP
rs1040698633 2375 dbSNP
rs540580833 2379 dbSNP
rs182274779 2381 dbSNP
rs931821465 2383 dbSNP
rs1031755132 2385 dbSNP
rs1234524566 2387 dbSNP
rs142332355 2393 dbSNP
rs1171678534 2400 dbSNP
rs989724879 2405 dbSNP
rs893250245 2408 dbSNP
rs1363790551 2409 dbSNP
rs1193615101 2412 dbSNP
rs1167031744 2417 dbSNP
rs1386282885 2417 dbSNP
rs1463035131 2418 dbSNP
rs557293292 2419 dbSNP
rs1422340918 2420 dbSNP
rs763756007 2420 dbSNP
rs980436757 2421 dbSNP
rs1187541128 2423 dbSNP
rs1485752304 2429 dbSNP
rs1171237553 2433 dbSNP
rs927602751 2436 dbSNP
rs1011573028 2437 dbSNP
rs1272043644 2438 dbSNP
rs1242144150 2450 dbSNP
rs778515613 2451 dbSNP
rs1020329686 2453 dbSNP
rs1381386746 2456 dbSNP
rs903432155 2460 dbSNP
rs1003087936 2465 dbSNP
rs1046845524 2470 dbSNP
rs74099843 2471 dbSNP
rs1300938434 2473 dbSNP
rs1038962128 2474 dbSNP
rs796617103 2477 dbSNP
rs1456582322 2481 dbSNP
rs1047182 2484 dbSNP
rs1171420053 2490 dbSNP
rs533616910 2508 dbSNP
rs1367277777 2512 dbSNP
rs867357206 2518 dbSNP
rs958870734 2522 dbSNP
rs992083526 2529 dbSNP
rs553163934 2534 dbSNP
rs769798863 2546 dbSNP
rs1251828747 2547 dbSNP
rs75896377 2550 dbSNP
rs1481337038 2551 dbSNP
rs1029891942 2552 dbSNP
rs984419443 2559 dbSNP
rs773508340 2566 dbSNP
rs907510677 2568 dbSNP
rs998845039 2569 dbSNP
rs962024508 2574 dbSNP
rs114518405 2584 dbSNP
rs1213464195 2585 dbSNP
rs1398764716 2586 dbSNP
rs1251462572 2590 dbSNP
rs923199354 2591 dbSNP
rs1466682561 2598 dbSNP
rs111746657 2604 dbSNP
rs1418942303 2612 dbSNP
rs1175994206 2615 dbSNP
rs1426787048 2616 dbSNP
rs1050280791 2625 dbSNP
rs575588544 2629 dbSNP
rs1418883149 2630 dbSNP
rs1420314854 2638 dbSNP
rs947491109 2645 dbSNP
rs1041825459 2648 dbSNP
rs1203974844 2652 dbSNP
rs903149117 2655 dbSNP
rs1481903981 2657 dbSNP
rs749505260 2658 dbSNP
rs561368457 2668 dbSNP
rs980666892 2669 dbSNP
rs532408865 2670 dbSNP
rs1003298417 2675 dbSNP
rs1057358769 2676 dbSNP
rs186474209 2677 dbSNP
rs1307867484 2678 dbSNP
rs551602543 2680 dbSNP
rs1348787751 2684 dbSNP
rs139239668 2700 dbSNP
rs1333721026 2705 dbSNP
rs1435675630 2716 dbSNP
rs1401982786 2717 dbSNP
rs774824852 2718 dbSNP
rs1005894029 2722 dbSNP
rs759866222 2726 dbSNP
rs533480971 2727 dbSNP
rs547101441 2738 dbSNP
rs1363865309 2742 dbSNP
rs1466503147 2745 dbSNP
rs1180914541 2750 dbSNP
rs149987923 2757 dbSNP
rs899979776 2769 dbSNP
rs529084541 2770 dbSNP
rs1051276999 2788 dbSNP
rs765854349 2790 dbSNP
rs976177229 2790 dbSNP
rs998771389 2790 dbSNP
rs80245954 2791 dbSNP
rs11175772 2792 dbSNP
rs1227798395 2797 dbSNP
rs893193639 2800 dbSNP
rs1183679741 2801 dbSNP
rs1012063663 2802 dbSNP
rs77195793 2803 dbSNP
rs1023073962 2804 dbSNP
rs969626074 2805 dbSNP
rs1396531530 2811 dbSNP
rs953454972 2816 dbSNP
rs1159096708 2817 dbSNP
rs116362682 2819 dbSNP
rs1034901449 2822 dbSNP
rs1165166096 2834 dbSNP
rs1475038069 2839 dbSNP
rs146624344 2855 dbSNP
rs1194978048 2857 dbSNP
rs1413959777 2859 dbSNP
rs982414959 2863 dbSNP
rs947211209 2867 dbSNP
rs1463576235 2871 dbSNP
rs1041794414 2872 dbSNP
rs1355999565 2877 dbSNP
rs1282651108 2886 dbSNP
rs962427861 2888 dbSNP
rs1343397314 2891 dbSNP
rs866595278 2892 dbSNP
rs921055361 2899 dbSNP
rs1396014616 2907 dbSNP
rs932777149 2908 dbSNP
rs924705401 2912 dbSNP
rs550986463 2918 dbSNP
rs1412583360 2948 dbSNP
rs1169306130 2952 dbSNP
rs775891494 2954 dbSNP
rs1289806616 2957 dbSNP
rs1186572233 2958 dbSNP
rs1057448419 2959 dbSNP
rs1469814153 2969 dbSNP
rs1350876701 2981 dbSNP
rs1224713943 2988 dbSNP
rs894718081 2989 dbSNP
rs1451125434 2998 dbSNP
rs1315679999 2999 dbSNP
rs1212848840 3004 dbSNP
rs141431230 3010 dbSNP
rs1048637417 3011 dbSNP
rs1343288018 3022 dbSNP
rs1297398099 3025 dbSNP
rs888588477 3036 dbSNP
rs533672593 3039 dbSNP
rs766936016 3040 dbSNP
rs962131282 3045 dbSNP
rs553806936 3050 dbSNP
rs1254272538 3052 dbSNP
rs1470613143 3060 dbSNP
rs1011618205 3070 dbSNP
rs573402500 3073 dbSNP
rs1369705214 3077 dbSNP
rs1166555914 3086 dbSNP
rs1455427621 3088 dbSNP
rs1044868471 3091 dbSNP
rs1190574912 3096 dbSNP
rs536036545 3100 dbSNP
rs1176416791 3101 dbSNP
rs763609188 3111 dbSNP
rs1245103392 3113 dbSNP
rs1030451131 3116 dbSNP
rs953026483 3119 dbSNP
rs555639790 3130 dbSNP
rs1001999987 3137 dbSNP
rs1034870115 3144 dbSNP
rs576011685 3149 dbSNP
rs1279905269 3153 dbSNP
rs749993671 3167 dbSNP
rs1364850387 3168 dbSNP
rs1004114575 3170 dbSNP
rs545895340 3174 dbSNP
rs117467426 3188 dbSNP
rs1349425338 3189 dbSNP
rs764913917 3191 dbSNP
rs1436304774 3204 dbSNP
rs1432347800 3207 dbSNP
rs1175238948 3209 dbSNP
rs377347676 3211 dbSNP
rs1335981799 3215 dbSNP
rs1178955091 3218 dbSNP
rs1472966353 3219 dbSNP
rs977273717 3227 dbSNP
rs1279401013 3232 dbSNP
rs1180329683 3238 dbSNP
rs924704818 3240 dbSNP
rs376019198 3241 dbSNP
rs1238463612 3243 dbSNP
rs1210015048 3249 dbSNP
rs992838662 3251 dbSNP
rs1286964504 3268 dbSNP
rs780580929 3273 dbSNP
rs1327894334 3288 dbSNP
rs1281641841 3303 dbSNP
rs1416292025 3330 dbSNP
rs1347732090 3331 dbSNP
rs750213965 3336 dbSNP
rs1379602467 3337 dbSNP
rs953812214 3338 dbSNP
rs948738385 3339 dbSNP
rs1048606035 3342 dbSNP
rs1346833881 3351 dbSNP
rs888722243 3360 dbSNP
rs1438665501 3361 dbSNP
rs1204085164 3363 dbSNP
rs1411377429 3365 dbSNP
rs1157188923 3367 dbSNP
rs1476343101 3368 dbSNP
rs1414971906 3386 dbSNP
rs940179130 3390 dbSNP
rs1037640495 3392 dbSNP
rs912718512 3401 dbSNP
rs897571538 3407 dbSNP
rs1244290254 3408 dbSNP
rs1209941069 3410 dbSNP
rs1464027508 3414 dbSNP
rs1478873848 3418 dbSNP
rs1234739424 3426 dbSNP
rs1193971095 3428 dbSNP
rs1053779035 3432 dbSNP
rs914864191 3433 dbSNP
rs1394432433 3444 dbSNP
rs1452424976 3450 dbSNP
rs192540576 3458 dbSNP
rs1363850903 3462 dbSNP
rs184851040 3469 dbSNP
rs1044406310 3480 dbSNP
rs1409082057 3486 dbSNP
rs755348279 3487 dbSNP
rs1387980708 3493 dbSNP
rs905919626 3507 dbSNP
rs1002944602 3518 dbSNP
rs1057261646 3527 dbSNP
rs567496460 3538 dbSNP
rs1422395716 3540 dbSNP
rs1392465754 3544 dbSNP
rs1353175325 3552 dbSNP
rs888754654 3553 dbSNP
rs1007250531 3561 dbSNP
rs190632921 3565 dbSNP
rs1449456383 3569 dbSNP
rs1246727315 3573 dbSNP
rs1214948916 3578 dbSNP
rs1488533409 3579 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucucgUUCUGG-GGCAGAGAUUu 5'
               :||||| :| |  |||| 
Target 5' agaugGAGACCAUCCUGGCUAAc 3'
1 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000308259.5 | 3UTR | AGAUGGAGACCAUCCUGGCUAACAUGGUGAAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38226 Liver fibrosis -0.546 5.2e-3 -0.623 1.3e-3 21 Click to see details
GSE42095 Differentiated embryonic stem cells -0.33 6.2e-2 -0.405 2.8e-2 23 Click to see details
GSE26953 Aortic valvular endothelial cells -0.168 2.2e-1 -0.265 1.1e-1 24 Click to see details
GSE32688 Pancreatic cancer -0.112 2.7e-1 -0.060 3.7e-1 32 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.031 4.4e-1 0.097 3.2e-1 25 Click to see details
GSE28260 Renal cortex and medulla 0.038 4.5e-1 0.082 3.9e-1 13 Click to see details
GSE28544 Breast cancer 0.02 4.6e-1 -0.047 4.1e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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