pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol METTL14   
Synonyms hMETTL14
Description methyltransferase like 14
Transcript NM_020961   
Expression
Putative miRNA Targets on METTL14
3'UTR of METTL14
(miRNA target sites are highlighted)
>METTL14|NM_020961|3'UTR
   1 TTGTTGAAGACATTGAACCTATTCATCCTCCTCTAACCTTCTTTATTGTAATTAAATTTCAAGTGGGAGACTTAACTTTA
  81 GAACTCACTTCCAGCTTGCACTTTGCTTTAATTTCTCTGAGCTGCAAGAATGTCTTAGCGAGCCTTGCTTGCAGTTGTCA
 161 CACACACTGTCTGGTTTTTTTCAGGATAAATGAATGATTCTGCCTTTTGTTATGTGCGTGAACAGAATGGAACAACTCAA
 241 GTAGCTTCATCTTCAGAGACTGAATTTATTCTGATAGACTTCAGCTAATTACAAAGGATTTTGCTAATTTTTGGGAATAA
 321 ATAATGGAAAAAGATCCAGTCTGTGGTATCATGCTAGTGCTGACAGGGCCTTGATAGAATAGAGTTGGAAAAGATGGTAA
 401 GCTTTTGTCAGGGTTTTAACATTTTCTTGATGAAACAATAAAAAGAGGTAAGCTTTTTTCTTCTTTTTTTTTAAGTTTTA
 481 AATAAACTCAGATATAATTTGAATACTGAAGAAATTAAGAGACTTTGAACAAAAACTCTTCCCAAATCTAAATTTGATAG
 561 GGGAGGTGGAGATTCCAGGGGTGGGTGAAAGAAGAGATAGAACTTAGCAGGCAGACTTAAAAAAAAAAAAAAAGTTTATC
 641 ATCATAATCTCAATTTTGTGGCTATGACTCCTAATCACGCTTCCTAAGAAGCAAAGGAGGACAAATATTCATGTGCTAGA
 721 TAGCACTGTGGTGTGGACTTGAACTTGGATTGACCTTAAATTTTATATTCCTCAAATAAAAGAGAGGCAGCGACAAGATA
 801 CCTCATTATCAGATGCTTGGTTTATACATTTTGGGACTAAAATACTTGGTGATGAAATGACATACACCTTTAAACTTGTT
 881 ATGGAGATAGTTTAATGTAAAACCAACTACGGAAAACCCTCAACTTAAGGATACAGCTTGGAAATTGGAACTGCAATTGC
 961 CTTTTATTAAAACCATATGGTGTGATGTTTGTTTTTAAAATTATATAAGACTTTATGCTGTCACTTCTCTTGCTGTACTG
1041 TAATTCATGTTTTAAATGAATTTGATAATGAAATTATACTATTATCATTCTTGATGAATACTTTTCTTATTTTTATGATT
1121 TTTCTAATGAAACTTTAAACTTTTGAGATTTGAGAGTCTGTTTTCTATAAGTAGAATTACTGTTGTTACAAAATGAAAAA
1201 GGACTGACCTAAAATCAGTCTCTTCTTTTGGTCTGTGATGGATTTTAATGGCCGTTCTGTGCTCATATATACCTAAGATG
1281 AGATTATATTACATCCACCAAAGACTCAGTTTGAAGATAAGGAATGAGTGATAGAAGAAATAAGGCTGAGATCCTTAAAA
1361 GCCTAATTAATTTAACTCGCTTAACCCATTAGTACTATCTAGTACAAGACCCCTTTTTTTTTGCTGAAATTATGGTATAT
1441 TTTCAACTTCACTAATTACAAATTATCTAGATTTAGAACTCTATATGTCAGCATTGACCTGGGAATGAAGTCAGGATAGA
1521 GAAATTCCACTTGCCTGTGATGGGTCCTTAGAAGTATCAGCTAAGGAGTGACCCTGTCCTATACACAGGGCTCTCTATTA
1601 CGTTCCATACCCTGGGCCTACCCAAGGTGACATTCCTGCTGTTTACATGGCATAGGCACCTGTGAGATCAGTGTCACAAT
1681 TTCATCTTAGAAAGAGGTAGGTATGGCTGCTTTGTCGGTTGAAAGTTAAGGGGAGCCATGATCTACCATATTTAGGAAAA
1761 AGTTATTTAAAAAAGAGCAGATGGTGGAAAAAGAATGTAAGACCCAGAATTTATCCCTTTGACAATGAATCTGGCCTTTT
1841 TAATAGCAGGATGGAATTGATTCACTAGTTTTTGCTAACTTTCACTTTCAGTAAAGGTTGAGGTGTTGTTTTTGCAATGA
1921 CTGTGTATTCATTGAGGAAAGGTTTCCAATGAAATTTCATTACTCTGAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucuCCG--UCCAAGG--AC-CUAGUa 5'
             |||  |||  ||  || ||||| 
Target 5' catGGCATAGGCACCTGTGAGATCAg 3'
1646 - 1671 122.00 -13.80
2
miRNA  3' ucuccGUCCAAGG-ACC-UAGUa 5'
               |||  ||: ||| |||| 
Target 5' agatcCAG--TCTGTGGTATCAt 3'
332 - 352 116.00 -9.50
3
miRNA  3' ucuCCGU-CC--AA---GGACCUAGUa 5'
             ||:: ||  ||   |:|||||:: 
Target 5' tgtGGTGTGGACTTGAACTTGGATTGa 3'
727 - 753 116.00 -8.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30177780 38 COSMIC
COSN9586938 45 COSMIC
COSN21494874 99 COSMIC
COSN17038093 124 COSMIC
COSN31597542 126 COSMIC
COSN16190987 205 COSMIC
COSN16908453 288 COSMIC
COSN20100465 634 COSMIC
COSN29109815 634 COSMIC
COSN22881642 843 COSMIC
COSN16353539 1245 COSMIC
COSN1286091 1423 COSMIC
COSN30347631 1516 COSMIC
COSN29317098 1648 COSMIC
COSN1983615 2236 COSMIC
COSN25565563 2423 COSMIC
COSN9586939 2981 COSMIC
COSN5550455 3131 COSMIC
COSN6793665 3220 COSMIC
COSN26189859 3673 COSMIC
COSN1983616 3804 COSMIC
COSN5051478 3896 COSMIC
COSN1983617 4076 COSMIC
COSN14880064 4675 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs772937493 3 dbSNP
rs1237524687 6 dbSNP
rs1323795231 13 dbSNP
rs1478040894 17 dbSNP
rs1034083504 19 dbSNP
rs549027509 20 dbSNP
rs762709063 22 dbSNP
rs773460794 24 dbSNP
rs766192980 26 dbSNP
rs751111520 30 dbSNP
rs1022571927 31 dbSNP
rs992201968 34 dbSNP
rs370219944 36 dbSNP
rs754582203 38 dbSNP
rs767334348 47 dbSNP
rs567197624 49 dbSNP
rs1293665670 70 dbSNP
rs1437980601 84 dbSNP
rs536459723 86 dbSNP
rs549667799 87 dbSNP
rs1302121072 89 dbSNP
rs1311950607 91 dbSNP
rs770700459 92 dbSNP
rs1168242119 95 dbSNP
rs188561580 101 dbSNP
rs1425773720 115 dbSNP
rs903589001 126 dbSNP
rs1490853343 128 dbSNP
rs1267060855 133 dbSNP
rs1221968526 140 dbSNP
rs1231603149 141 dbSNP
rs979665938 144 dbSNP
rs1283083394 146 dbSNP
rs538751702 147 dbSNP
rs576144457 148 dbSNP
rs932878198 152 dbSNP
rs999692326 154 dbSNP
rs1483587429 158 dbSNP
rs1202848930 163 dbSNP
rs1307488809 166 dbSNP
rs1302549176 167 dbSNP
rs1220501893 168 dbSNP
rs1343040659 169 dbSNP
rs1282279378 170 dbSNP
rs114039398 171 dbSNP
rs4834698 173 dbSNP
rs1296297693 175 dbSNP
rs1461294167 175 dbSNP
rs987647909 179 dbSNP
rs1248918374 183 dbSNP
rs1178119105 187 dbSNP
rs1481475185 194 dbSNP
rs1427204265 197 dbSNP
rs1483766597 206 dbSNP
rs555322584 210 dbSNP
rs1177391142 214 dbSNP
rs138412059 215 dbSNP
rs1431228384 216 dbSNP
rs190648195 218 dbSNP
rs974922941 219 dbSNP
rs920791335 225 dbSNP
rs1206080044 229 dbSNP
rs775365816 236 dbSNP
rs1320807389 242 dbSNP
rs563727152 253 dbSNP
rs1352023844 256 dbSNP
rs752748541 257 dbSNP
rs1428975332 258 dbSNP
rs768831447 261 dbSNP
rs1390657568 262 dbSNP
rs1379569100 282 dbSNP
rs1304514640 285 dbSNP
rs141632546 288 dbSNP
rs907837603 295 dbSNP
rs1405244305 299 dbSNP
rs1175874887 300 dbSNP
rs1368753926 305 dbSNP
rs544763890 321 dbSNP
rs1179860725 325 dbSNP
rs897677148 335 dbSNP
rs993308206 338 dbSNP
rs1460418520 347 dbSNP
rs895044363 347 dbSNP
rs1385314196 348 dbSNP
rs1049352665 353 dbSNP
rs1208857155 354 dbSNP
rs1349071141 355 dbSNP
rs1228256021 356 dbSNP
rs1237792462 361 dbSNP
rs1322115181 366 dbSNP
rs1043538174 370 dbSNP
rs887729260 371 dbSNP
rs999242598 386 dbSNP
rs1321126967 388 dbSNP
rs1435925605 394 dbSNP
rs774809489 401 dbSNP
rs762177382 403 dbSNP
rs1002523428 404 dbSNP
rs1308738543 423 dbSNP
rs1453261626 437 dbSNP
rs890907764 439 dbSNP
rs1165905206 441 dbSNP
rs1443155493 443 dbSNP
rs1033726145 447 dbSNP
rs1189705162 449 dbSNP
rs1245634560 452 dbSNP
rs768117302 453 dbSNP
rs1487270483 458 dbSNP
rs1488627658 464 dbSNP
rs758343034 464 dbSNP
rs564569723 470 dbSNP
rs1253354012 474 dbSNP
rs1298249545 479 dbSNP
rs1229466993 490 dbSNP
rs1448689790 493 dbSNP
rs1328298548 507 dbSNP
rs1166619146 521 dbSNP
rs1316374157 528 dbSNP
rs1381684176 531 dbSNP
rs1064034 536 dbSNP
rs1384923722 537 dbSNP
rs1423139986 537 dbSNP
rs1169813536 543 dbSNP
rs1020965448 548 dbSNP
rs952317619 550 dbSNP
rs1218599902 553 dbSNP
rs1270612751 568 dbSNP
rs1219714817 569 dbSNP
rs983523792 571 dbSNP
rs907955478 578 dbSNP
rs1337411654 579 dbSNP
rs546956161 584 dbSNP
rs1226860322 590 dbSNP
rs1328206519 592 dbSNP
rs1346163709 599 dbSNP
rs1372138984 617 dbSNP
rs1434888100 618 dbSNP
rs1330019559 619 dbSNP
rs1365170043 619 dbSNP
rs1411997656 619 dbSNP
rs745406626 619 dbSNP
rs966867226 621 dbSNP
rs1296044148 624 dbSNP
rs1364621999 631 dbSNP
rs1167786803 633 dbSNP
rs1466109023 633 dbSNP
rs76170672 634 dbSNP
rs1215684659 635 dbSNP
rs601834 638 dbSNP
rs1319437729 639 dbSNP
rs1435851055 643 dbSNP
rs376305749 647 dbSNP
rs1215145493 654 dbSNP
rs954351633 657 dbSNP
rs1324403482 660 dbSNP
rs1265137235 662 dbSNP
rs916595294 665 dbSNP
rs766461670 671 dbSNP
rs947973590 674 dbSNP
rs1444834521 675 dbSNP
rs371489979 679 dbSNP
rs986111826 680 dbSNP
rs903651100 682 dbSNP
rs1408910465 687 dbSNP
rs1243637843 694 dbSNP
rs1475667495 695 dbSNP
rs146200040 705 dbSNP
rs935151891 705 dbSNP
rs1413110056 707 dbSNP
rs1313746163 709 dbSNP
rs944326769 713 dbSNP
rs549992396 726 dbSNP
rs919034880 747 dbSNP
rs929029303 749 dbSNP
rs1187978539 774 dbSNP
rs1462631127 778 dbSNP
rs1007961092 785 dbSNP
rs1395582078 789 dbSNP
rs569739308 792 dbSNP
rs899517186 800 dbSNP
rs887605925 803 dbSNP
rs1279388972 815 dbSNP
rs78172833 822 dbSNP
rs79942939 824 dbSNP
rs76615973 827 dbSNP
rs1028332330 828 dbSNP
rs539157458 840 dbSNP
rs1335299226 842 dbSNP
rs1005441469 847 dbSNP
rs137942566 861 dbSNP
rs566150443 879 dbSNP
rs1398539486 880 dbSNP
rs1406756524 882 dbSNP
rs1376319246 890 dbSNP
rs1013515659 893 dbSNP
rs535027142 897 dbSNP
rs1020893378 898 dbSNP
rs543400018 911 dbSNP
rs58080107 912 dbSNP
rs1032549431 913 dbSNP
rs969801333 916 dbSNP
rs954313190 922 dbSNP
rs979490418 922 dbSNP
rs3087958 923 dbSNP
rs1361963963 928 dbSNP
rs183228994 934 dbSNP
rs965603235 937 dbSNP
rs1362067514 941 dbSNP
rs975776472 957 dbSNP
rs918917701 979 dbSNP
rs750112206 991 dbSNP
rs929079991 1006 dbSNP
rs561292300 1008 dbSNP
rs912408817 1008 dbSNP
rs943766718 1010 dbSNP
rs72426278 1012 dbSNP
rs758241013 1015 dbSNP
rs1421532007 1020 dbSNP
rs1418684520 1022 dbSNP
rs909055397 1030 dbSNP
rs1157083350 1034 dbSNP
rs1262756038 1036 dbSNP
rs557568602 1046 dbSNP
rs937812591 1049 dbSNP
rs1055068194 1050 dbSNP
rs1223415442 1057 dbSNP
rs1410584303 1064 dbSNP
rs1490951100 1064 dbSNP
rs1222182931 1074 dbSNP
rs1308674397 1080 dbSNP
rs777921599 1081 dbSNP
rs367564068 1082 dbSNP
rs1401704352 1084 dbSNP
rs746501536 1084 dbSNP
rs896428909 1086 dbSNP
rs1357994627 1095 dbSNP
rs899465892 1097 dbSNP
rs995574654 1107 dbSNP
rs949288701 1111 dbSNP
rs1312889092 1123 dbSNP
rs1343230335 1128 dbSNP
rs1048080625 1137 dbSNP
rs1462300439 1140 dbSNP
rs888011895 1140 dbSNP
rs879246393 1149 dbSNP
rs545961441 1160 dbSNP
rs1042403912 1168 dbSNP
rs1168160125 1175 dbSNP
rs1349355892 1184 dbSNP
rs558248487 1190 dbSNP
rs1005148412 1192 dbSNP
rs1015074281 1196 dbSNP
rs428409 1224 dbSNP
rs1218485454 1239 dbSNP
rs1267037742 1242 dbSNP
rs1276253633 1249 dbSNP
rs1000959954 1254 dbSNP
rs1253603487 1255 dbSNP
rs202210079 1256 dbSNP
rs540626596 1260 dbSNP
rs1306438772 1263 dbSNP
rs889981017 1265 dbSNP
rs1007495281 1270 dbSNP
rs1019781079 1273 dbSNP
rs969538534 1274 dbSNP
rs1179902954 1276 dbSNP
rs1391771720 1278 dbSNP
rs1375170165 1287 dbSNP
rs1296411439 1289 dbSNP
rs560540745 1300 dbSNP
rs994421609 1306 dbSNP
rs1172288020 1323 dbSNP
rs1177291215 1346 dbSNP
rs1470991767 1355 dbSNP
rs1427483355 1364 dbSNP
rs1175549121 1367 dbSNP
rs1025990136 1368 dbSNP
rs1420088336 1371 dbSNP
rs530040552 1379 dbSNP
rs984571223 1380 dbSNP
rs769509079 1392 dbSNP
rs774556398 1393 dbSNP
rs1369369122 1396 dbSNP
rs1205079851 1398 dbSNP
rs35100028 1398 dbSNP
rs2171739 1404 dbSNP
rs1320723186 1405 dbSNP
rs1389227094 1407 dbSNP
rs1330457432 1411 dbSNP
rs959132848 1412 dbSNP
rs543335607 1413 dbSNP
rs35174242 1414 dbSNP
rs943883459 1414 dbSNP
rs991086590 1415 dbSNP
rs1222960422 1418 dbSNP
rs1383516214 1423 dbSNP
rs1336048913 1424 dbSNP
rs751983783 1426 dbSNP
rs1272809653 1427 dbSNP
rs1302510666 1428 dbSNP
rs1349827530 1430 dbSNP
rs781306702 1431 dbSNP
rs1273897249 1432 dbSNP
rs1341534067 1433 dbSNP
rs1194224678 1434 dbSNP
rs1252758987 1435 dbSNP
rs949342742 1436 dbSNP
rs563526544 1438 dbSNP
rs367747242 1463 dbSNP
rs1439456884 1477 dbSNP
rs921012433 1484 dbSNP
rs923950365 1490 dbSNP
rs1198446459 1492 dbSNP
rs1254801783 1494 dbSNP
rs1251476710 1499 dbSNP
rs931106436 1502 dbSNP
rs1258575663 1506 dbSNP
rs1455885731 1511 dbSNP
rs1359805947 1513 dbSNP
rs936638334 1514 dbSNP
rs1053775106 1518 dbSNP
rs1390164208 1523 dbSNP
rs1460019953 1538 dbSNP
rs1243620827 1542 dbSNP
rs1169085728 1566 dbSNP
rs1312148451 1576 dbSNP
rs1382845523 1577 dbSNP
rs1387492712 1585 dbSNP
rs1287271114 1591 dbSNP
rs1396621768 1598 dbSNP
rs1404352681 1602 dbSNP
rs1419485243 1603 dbSNP
rs1166038960 1605 dbSNP
rs1048504894 1606 dbSNP
rs886794289 1608 dbSNP
rs889898129 1614 dbSNP
rs1036623603 1619 dbSNP
rs896774630 1626 dbSNP
rs532228259 1632 dbSNP
rs1006968321 1633 dbSNP
rs1041273332 1640 dbSNP
rs905263754 1645 dbSNP
rs1219937789 1649 dbSNP
rs901305387 1651 dbSNP
rs1032734854 1652 dbSNP
rs956708628 1654 dbSNP
rs1328206063 1656 dbSNP
rs1362864383 1659 dbSNP
rs1276577645 1669 dbSNP
rs994431484 1679 dbSNP
rs1229532994 1688 dbSNP
rs1305377710 1689 dbSNP
rs1423122489 1689 dbSNP
rs1390714774 1692 dbSNP
rs1025874024 1696 dbSNP
rs1253100061 1702 dbSNP
rs772446642 1704 dbSNP
rs1006321606 1710 dbSNP
rs987986971 1711 dbSNP
rs187945254 1717 dbSNP
rs374063180 1717 dbSNP
rs749095921 1718 dbSNP
rs566183174 1724 dbSNP
rs1450765913 1727 dbSNP
rs1273630566 1734 dbSNP
rs1470095734 1736 dbSNP
rs1194726894 1739 dbSNP
rs1197441437 1741 dbSNP
rs990527529 1742 dbSNP
rs917751221 1743 dbSNP
rs931030557 1747 dbSNP
rs983886890 1749 dbSNP
rs970499903 1760 dbSNP
rs977991661 1761 dbSNP
rs773653041 1763 dbSNP
rs1330847441 1770 dbSNP
rs936590253 1774 dbSNP
rs1056857546 1776 dbSNP
rs1398699518 1781 dbSNP
rs781698848 1790 dbSNP
rs1469857496 1824 dbSNP
rs1195996273 1863 dbSNP
rs896720648 1866 dbSNP
rs1477591267 1873 dbSNP
rs1373122413 1878 dbSNP
rs1233193878 1885 dbSNP
rs949646450 1889 dbSNP
rs1472206919 1891 dbSNP
rs1237485941 1892 dbSNP
rs1162337253 1898 dbSNP
rs1198152374 1899 dbSNP
rs1054230848 1901 dbSNP
rs1045613155 1905 dbSNP
rs1461777695 1906 dbSNP
rs761175095 1907 dbSNP
rs1217642088 1922 dbSNP
rs1344557210 1922 dbSNP
rs1280552309 1924 dbSNP
rs1375404506 1925 dbSNP
rs1331198099 1927 dbSNP
rs1452735717 1933 dbSNP
rs1407602335 1937 dbSNP
rs561647073 1950 dbSNP
rs1413604247 1952 dbSNP
rs942784694 1960 dbSNP
rs1032438285 1973 dbSNP
rs1160147891 1977 dbSNP
rs191306469 1978 dbSNP
rs1379626291 1987 dbSNP
rs1184090415 1989 dbSNP
rs183888199 1990 dbSNP
rs1382533170 2001 dbSNP
rs1009522823 2010 dbSNP
rs1442128341 2012 dbSNP
rs901356396 2015 dbSNP
rs540670225 2020 dbSNP
rs1383805610 2026 dbSNP
rs1047241423 2040 dbSNP
rs1309209019 2042 dbSNP
rs766406512 2044 dbSNP
rs888723182 2048 dbSNP
rs1296250977 2054 dbSNP
rs1327077904 2059 dbSNP
rs1232810692 2060 dbSNP
rs1005791280 2067 dbSNP
rs1016379969 2070 dbSNP
rs569707762 2077 dbSNP
rs1019598234 2081 dbSNP
rs1337137702 2082 dbSNP
rs34516386 2086 dbSNP
rs894772016 2086 dbSNP
rs965237054 2089 dbSNP
rs748193168 2093 dbSNP
rs1214580896 2095 dbSNP
rs975372354 2105 dbSNP
rs1485121108 2118 dbSNP
rs1011958212 2121 dbSNP
rs769926082 2132 dbSNP
rs568348497 2135 dbSNP
rs1446417568 2139 dbSNP
rs1137957 2145 dbSNP
rs560400535 2160 dbSNP
rs1472476073 2169 dbSNP
rs1242920385 2175 dbSNP
rs188207932 2176 dbSNP
rs908283580 2179 dbSNP
rs777955323 2180 dbSNP
rs776718127 2181 dbSNP
rs977924729 2183 dbSNP
rs1185072883 2191 dbSNP
rs377240285 2192 dbSNP
rs1227253916 2194 dbSNP
rs1475301480 2201 dbSNP
rs562370277 2204 dbSNP
rs1271594333 2211 dbSNP
rs574221545 2212 dbSNP
rs916933672 2213 dbSNP
rs192789428 2220 dbSNP
rs1137961 2225 dbSNP
rs1348064020 2227 dbSNP
rs1426302724 2227 dbSNP
rs1163907638 2234 dbSNP
rs1404873126 2235 dbSNP
rs1455195685 2241 dbSNP
rs1137962 2244 dbSNP
rs1172879481 2247 dbSNP
rs1476987052 2250 dbSNP
rs1262737436 2252 dbSNP
rs942689581 2256 dbSNP
rs1489635563 2267 dbSNP
rs1245486041 2268 dbSNP
rs985342451 2271 dbSNP
rs1221419457 2276 dbSNP
rs1045323091 2278 dbSNP
rs61393887 2294 dbSNP
rs936848943 2295 dbSNP
rs922704310 2297 dbSNP
rs1316987680 2298 dbSNP
rs909766534 2301 dbSNP
rs941285682 2302 dbSNP
rs1283462027 2303 dbSNP
rs1406550983 2309 dbSNP
rs972398441 2312 dbSNP
rs918266230 2313 dbSNP
rs1292891174 2317 dbSNP
rs1356173349 2318 dbSNP
rs1455843470 2318 dbSNP
rs1464118237 2318 dbSNP
rs35522030 2318 dbSNP
rs939098609 2318 dbSNP
rs1177333454 2319 dbSNP
rs1435308010 2321 dbSNP
rs1412860706 2335 dbSNP
rs1311080503 2338 dbSNP
rs571854804 2342 dbSNP
rs1054405171 2344 dbSNP
rs1240562995 2346 dbSNP
rs1196224252 2363 dbSNP
rs1234098874 2382 dbSNP
rs1456882191 2388 dbSNP
rs930029369 2394 dbSNP
rs1315492896 2402 dbSNP
rs1224920365 2405 dbSNP
rs892534376 2408 dbSNP
rs1047293129 2411 dbSNP
rs1224124378 2420 dbSNP
rs888616407 2425 dbSNP
rs144350109 2432 dbSNP
rs1444655968 2432 dbSNP
rs1399584976 2434 dbSNP
rs1261683672 2442 dbSNP
rs1467813458 2445 dbSNP
rs1357644437 2450 dbSNP
rs1175872061 2460 dbSNP
rs1056016076 2483 dbSNP
rs1209378689 2485 dbSNP
rs572614701 2489 dbSNP
rs1177271272 2512 dbSNP
rs1438567228 2517 dbSNP
rs1258953862 2541 dbSNP
rs1201640331 2543 dbSNP
rs1482109145 2544 dbSNP
rs554581238 2545 dbSNP
rs1157303464 2548 dbSNP
rs1216253846 2549 dbSNP
rs1028233699 2554 dbSNP
rs952778039 2557 dbSNP
rs1005365411 2561 dbSNP
rs1015465103 2562 dbSNP
rs894815698 2569 dbSNP
rs1397848341 2571 dbSNP
rs1400358127 2584 dbSNP
rs185282225 2584 dbSNP
rs1454662075 2585 dbSNP
rs1362793167 2601 dbSNP
rs1157210346 2614 dbSNP
rs1419663852 2624 dbSNP
rs763990664 2633 dbSNP
rs906326897 2635 dbSNP
rs1189087254 2639 dbSNP
rs543377956 2659 dbSNP
rs1420649582 2662 dbSNP
rs1255053715 2664 dbSNP
rs419292 2674 dbSNP
rs1283679164 2676 dbSNP
rs1376868316 2683 dbSNP
rs1031255100 2692 dbSNP
rs1360148577 2707 dbSNP
rs957864253 2709 dbSNP
rs980211583 2715 dbSNP
rs1247091473 2722 dbSNP
rs989818916 2723 dbSNP
rs1175485325 2724 dbSNP
rs1018169884 2731 dbSNP
rs1377331248 2734 dbSNP
rs532389997 2735 dbSNP
rs1053947269 2741 dbSNP
rs1371381266 2747 dbSNP
rs1399766678 2752 dbSNP
rs1366745599 2755 dbSNP
rs914088137 2757 dbSNP
rs1455961266 2760 dbSNP
rs976776093 2761 dbSNP
rs546068272 2774 dbSNP
rs780800309 2782 dbSNP
rs1478638423 2800 dbSNP
rs922588017 2802 dbSNP
rs745431549 2812 dbSNP
rs1347646651 2815 dbSNP
rs559578969 2816 dbSNP
rs368669 2819 dbSNP
rs189814738 2820 dbSNP
rs779821265 2826 dbSNP
rs181576250 2827 dbSNP
rs530828290 2829 dbSNP
rs1177447707 2850 dbSNP
rs550913706 2855 dbSNP
rs1219319310 2856 dbSNP
rs1005894512 2859 dbSNP
rs746092793 2861 dbSNP
rs950297029 2864 dbSNP
rs571057818 2869 dbSNP
rs906170007 2877 dbSNP
rs999240015 2878 dbSNP
rs1332001056 2882 dbSNP
rs796820841 2897 dbSNP
rs372178329 2901 dbSNP
rs893650832 2906 dbSNP
rs1298313101 2919 dbSNP
rs1466681715 2921 dbSNP
rs1421029705 2922 dbSNP
rs1169466286 2924 dbSNP
rs1480655552 2925 dbSNP
rs1429036609 2941 dbSNP
rs776751951 2943 dbSNP
rs773598011 2946 dbSNP
rs963988296 2947 dbSNP
rs998097460 2951 dbSNP
rs970253829 2953 dbSNP
rs1199360950 2958 dbSNP
rs1029669471 2970 dbSNP
rs951326898 2975 dbSNP
rs1256428423 2982 dbSNP
rs925640564 2983 dbSNP
rs437027 2990 dbSNP
rs909944309 2995 dbSNP
rs1277013510 3005 dbSNP
rs1463682001 3007 dbSNP
rs1298998997 3011 dbSNP
rs989692500 3016 dbSNP
rs566705282 3017 dbSNP
rs1310551067 3018 dbSNP
rs1370682720 3021 dbSNP
rs534439089 3023 dbSNP
rs369747433 3024 dbSNP
rs771479919 3026 dbSNP
rs1330068799 3031 dbSNP
rs1414725939 3039 dbSNP
rs1403903351 3043 dbSNP
rs1170652657 3048 dbSNP
rs1477539409 3053 dbSNP
rs945538214 3063 dbSNP
rs976926935 3067 dbSNP
rs922692126 3075 dbSNP
rs1306262982 3078 dbSNP
rs554389820 3085 dbSNP
rs1441648531 3086 dbSNP
rs991707200 3102 dbSNP
rs879799701 3104 dbSNP
rs1198053524 3105 dbSNP
rs148792617 3110 dbSNP
rs548621487 3111 dbSNP
rs1308791630 3112 dbSNP
rs1204751694 3116 dbSNP
rs62328104 3125 dbSNP
rs1049720500 3130 dbSNP
rs1375293114 3130 dbSNP
rs888464822 3131 dbSNP
rs1448109195 3132 dbSNP
rs1341904014 3136 dbSNP
rs574438152 3142 dbSNP
rs184578242 3154 dbSNP
rs1360872711 3155 dbSNP
rs927649122 3159 dbSNP
rs556913964 3161 dbSNP
rs934991362 3162 dbSNP
rs1178169617 3173 dbSNP
rs1379609886 3173 dbSNP
rs1052515569 3189 dbSNP
rs577252898 3191 dbSNP
rs1185629337 3200 dbSNP
rs560196794 3204 dbSNP
rs1287242510 3210 dbSNP
rs775485926 3211 dbSNP
rs1011062809 3212 dbSNP
rs1352228922 3215 dbSNP
rs1430425886 3224 dbSNP
rs1228396606 3237 dbSNP
rs366656 3238 dbSNP
rs769891228 3239 dbSNP
rs998108738 3254 dbSNP
rs559616018 3258 dbSNP
rs1299877359 3264 dbSNP
rs1397897747 3268 dbSNP
rs1032637936 3273 dbSNP
rs1165348857 3281 dbSNP
rs1029556484 3282 dbSNP
rs1460076380 3283 dbSNP
rs957268350 3300 dbSNP
rs1416115079 3301 dbSNP
rs1328275005 3314 dbSNP
rs1395698277 3319 dbSNP
rs988468672 3325 dbSNP
rs951378918 3327 dbSNP
rs1004239498 3328 dbSNP
rs1487472785 3336 dbSNP
rs1017335062 3337 dbSNP
rs1363440018 3345 dbSNP
rs962867755 3350 dbSNP
rs10016306 3351 dbSNP
rs1453806906 3362 dbSNP
rs1287179137 3369 dbSNP
rs1227239629 3376 dbSNP
rs1318226100 3377 dbSNP
rs1332144906 3383 dbSNP
rs904069186 3384 dbSNP
rs1279634798 3388 dbSNP
rs916087624 3388 dbSNP
rs971509670 3395 dbSNP
rs763464825 3400 dbSNP
rs1339545668 3408 dbSNP
rs145438363 3417 dbSNP
rs932727786 3418 dbSNP
rs201041250 3419 dbSNP
rs142478013 3423 dbSNP
rs1446251129 3424 dbSNP
rs1321736249 3431 dbSNP
rs1460935789 3431 dbSNP
rs796981165 3434 dbSNP
rs934896958 3443 dbSNP
rs1213526755 3449 dbSNP
rs1477056658 3453 dbSNP
rs562053908 3462 dbSNP
rs530990278 3464 dbSNP
rs550742499 3473 dbSNP
rs1037075088 3474 dbSNP
rs751422000 3476 dbSNP
rs949979488 3478 dbSNP
rs1220201643 3483 dbSNP
rs1457790775 3483 dbSNP
rs946487078 3495 dbSNP
rs1045563456 3502 dbSNP
rs1259618637 3509 dbSNP
rs1196426166 3517 dbSNP
rs1486885042 3519 dbSNP
rs1039435696 3524 dbSNP
rs1220729282 3528 dbSNP
rs1365426233 3529 dbSNP
rs1417265246 3532 dbSNP
rs1001255771 3543 dbSNP
rs1401057774 3550 dbSNP
rs1033164868 3553 dbSNP
rs564493882 3558 dbSNP
rs761818420 3565 dbSNP
rs1177322491 3566 dbSNP
rs899680259 3566 dbSNP
rs933788755 3568 dbSNP
rs774811666 3571 dbSNP
rs1400553363 3573 dbSNP
rs1423690765 3573 dbSNP
rs1193508858 3575 dbSNP
rs966903150 3576 dbSNP
rs976989171 3582 dbSNP
rs1176240750 3584 dbSNP
rs533477846 3594 dbSNP
rs1029792516 3605 dbSNP
rs1432131005 3612 dbSNP
rs1311696800 3613 dbSNP
rs1353057430 3623 dbSNP
rs954364030 3648 dbSNP
rs546865921 3654 dbSNP
rs1277854688 3655 dbSNP
rs1240844149 3664 dbSNP
rs1378980041 3672 dbSNP
rs1311641293 3673 dbSNP
rs1416213835 3675 dbSNP
rs1293578144 3682 dbSNP
rs1372886097 3689 dbSNP
rs1303573009 3695 dbSNP
rs189413544 3707 dbSNP
rs1221926901 3710 dbSNP
rs909954762 3728 dbSNP
rs1286087365 3736 dbSNP
rs887052562 3744 dbSNP
rs767601301 3751 dbSNP
rs962812993 3753 dbSNP
rs1256847749 3754 dbSNP
rs762447299 3764 dbSNP
rs545333439 3765 dbSNP
rs1484754449 3769 dbSNP
rs1355838280 3787 dbSNP
rs1190315692 3790 dbSNP
rs898457568 3791 dbSNP
rs1013017204 3803 dbSNP
rs1236976986 3804 dbSNP
rs372668845 3807 dbSNP
rs535666533 3813 dbSNP
rs368458317 3823 dbSNP
rs1022984285 3826 dbSNP
rs1313505376 3828 dbSNP
rs1398050132 3829 dbSNP
rs1377242407 3831 dbSNP
rs1312717132 3839 dbSNP
rs749894253 3841 dbSNP
rs971439124 3843 dbSNP
rs1363014047 3862 dbSNP
rs1157343524 3864 dbSNP
rs981606234 3868 dbSNP
rs1452452848 3872 dbSNP
rs927265862 3876 dbSNP
rs1286346197 3877 dbSNP
rs1166247840 3879 dbSNP
rs180777887 3885 dbSNP
rs937166286 3891 dbSNP
rs956353461 3900 dbSNP
rs1054317382 3901 dbSNP
rs1260979357 3904 dbSNP
rs1204537937 3911 dbSNP
rs1410653552 3921 dbSNP
rs990767397 3927 dbSNP
rs1488748851 3935 dbSNP
rs1266185183 3940 dbSNP
rs914918563 3941 dbSNP
rs946343987 3942 dbSNP
rs1332983793 3946 dbSNP
rs1292832302 3948 dbSNP
rs1420801725 3955 dbSNP
rs975177640 3956 dbSNP
rs1342720336 3957 dbSNP
rs892873327 3964 dbSNP
rs1382192042 3967 dbSNP
rs1009953791 3969 dbSNP
rs1294831079 3971 dbSNP
rs921038256 3973 dbSNP
rs186112810 3974 dbSNP
rs901519411 3976 dbSNP
rs1478692644 3978 dbSNP
rs150823207 3979 dbSNP
rs1192195748 3980 dbSNP
rs1030320025 3981 dbSNP
rs1433761569 3988 dbSNP
rs954359868 3990 dbSNP
rs1211722277 3994 dbSNP
rs537140392 3995 dbSNP
rs1467165201 4002 dbSNP
rs1007452750 4003 dbSNP
rs1199556161 4008 dbSNP
rs1017133765 4012 dbSNP
rs1268855579 4014 dbSNP
rs556718465 4015 dbSNP
rs564998939 4016 dbSNP
rs962760959 4036 dbSNP
rs1438118970 4037 dbSNP
rs1393034607 4043 dbSNP
rs1331399176 4052 dbSNP
rs1449950557 4061 dbSNP
rs116091383 4062 dbSNP
rs1397660294 4073 dbSNP
rs1167123001 4079 dbSNP
rs1466303891 4086 dbSNP
rs918554304 4088 dbSNP
rs547307505 4089 dbSNP
rs898515259 4106 dbSNP
rs1233434086 4107 dbSNP
rs142228813 4111 dbSNP
rs981502588 4112 dbSNP
rs1179326618 4132 dbSNP
rs927182308 4133 dbSNP
rs1345811404 4134 dbSNP
rs937301823 4135 dbSNP
rs1195591224 4137 dbSNP
rs1213033470 4142 dbSNP
rs1258310598 4142 dbSNP
rs1054666653 4144 dbSNP
rs553320719 4148 dbSNP
rs914424445 4156 dbSNP
rs1309426653 4157 dbSNP
rs1448278026 4157 dbSNP
rs191407124 4158 dbSNP
rs751846887 4159 dbSNP
rs1041456822 4166 dbSNP
rs7681126 4170 dbSNP
rs1404149330 4172 dbSNP
rs907333648 4183 dbSNP
rs530178104 4198 dbSNP
rs997590413 4200 dbSNP
rs34400761 4224 dbSNP
rs1380824492 4238 dbSNP
rs1159338693 4242 dbSNP
rs1050121883 4243 dbSNP
rs1231423745 4258 dbSNP
rs1181298333 4260 dbSNP
rs1179969224 4261 dbSNP
rs1258782678 4266 dbSNP
rs1234934798 4269 dbSNP
rs1002912551 4271 dbSNP
rs1209161344 4280 dbSNP
rs1347809264 4281 dbSNP
rs139818867 4283 dbSNP
rs956365984 4287 dbSNP
rs1347864187 4292 dbSNP
rs755374949 4295 dbSNP
rs1341885869 4307 dbSNP
rs117249119 4310 dbSNP
rs376112255 4311 dbSNP
rs1413875376 4316 dbSNP
rs1437126131 4320 dbSNP
rs1361091190 4327 dbSNP
rs1172591128 4354 dbSNP
rs964972122 4368 dbSNP
rs1395170871 4369 dbSNP
rs975103531 4371 dbSNP
rs920922188 4372 dbSNP
rs1400730694 4374 dbSNP
rs1017499142 4376 dbSNP
rs955112207 4382 dbSNP
rs747417841 4388 dbSNP
rs1300988768 4402 dbSNP
rs544676667 4406 dbSNP
rs1186264576 4407 dbSNP
rs1373021133 4426 dbSNP
rs1234959516 4436 dbSNP
rs908384255 4437 dbSNP
rs962876657 4442 dbSNP
rs1219499939 4444 dbSNP
rs868261608 4447 dbSNP
rs994369510 4450 dbSNP
rs939826743 4456 dbSNP
rs1445748991 4463 dbSNP
rs1275474669 4474 dbSNP
rs1025729717 4476 dbSNP
rs771426693 4477 dbSNP
rs1338871998 4512 dbSNP
rs1290985003 4514 dbSNP
rs1232487318 4518 dbSNP
rs1340843062 4527 dbSNP
rs1279833737 4531 dbSNP
rs1428599749 4541 dbSNP
rs1344520028 4546 dbSNP
rs971494300 4547 dbSNP
rs569722098 4549 dbSNP
rs1194280117 4554 dbSNP
rs564165895 4565 dbSNP
rs948632727 4566 dbSNP
rs1034367039 4573 dbSNP
rs1474992440 4574 dbSNP
rs1044416604 4577 dbSNP
rs298974 4578 dbSNP
rs990085954 4579 dbSNP
rs546553908 4583 dbSNP
rs181100545 4586 dbSNP
rs145355238 4588 dbSNP
rs1270906599 4593 dbSNP
rs1212733747 4621 dbSNP
rs977264340 4625 dbSNP
rs1279931730 4626 dbSNP
rs923007039 4651 dbSNP
rs933114315 4652 dbSNP
rs756623721 4653 dbSNP
rs1050486842 4657 dbSNP
rs888807659 4660 dbSNP
rs942909161 4662 dbSNP
rs1012181864 4663 dbSNP
rs1021781858 4666 dbSNP
rs1408504088 4669 dbSNP
rs147684395 4671 dbSNP
rs1038642549 4679 dbSNP
rs569418440 4682 dbSNP
rs994316643 4684 dbSNP
rs1192460785 4707 dbSNP
rs1457945276 4714 dbSNP
rs1259516678 4720 dbSNP
rs777644369 4727 dbSNP
rs1025844616 4734 dbSNP
rs1306656830 4735 dbSNP
rs1279045114 4736 dbSNP
rs907252317 4737 dbSNP
rs867536063 4748 dbSNP
rs1002976061 4754 dbSNP
rs1396454779 4755 dbSNP
rs1034724313 4756 dbSNP
rs536776238 4761 dbSNP
rs1300070340 4771 dbSNP
rs550674368 4772 dbSNP
rs1325920391 4774 dbSNP
rs1380106374 4776 dbSNP
rs954998102 4782 dbSNP
rs1177202531 4784 dbSNP
rs570530366 4785 dbSNP
rs1393793363 4786 dbSNP
rs1272001288 4791 dbSNP
rs986566624 4803 dbSNP
rs60947885 4808 dbSNP
rs866269891 4809 dbSNP
rs967291994 4816 dbSNP
rs974349963 4825 dbSNP
rs1480090749 4826 dbSNP
rs1237912278 4832 dbSNP
rs1212743026 4833 dbSNP
rs919770134 4835 dbSNP
rs749420411 4837 dbSNP
rs763215236 4860 dbSNP
rs1044255709 4862 dbSNP
rs1233695919 4863 dbSNP
rs1354440080 4864 dbSNP
rs928651689 4866 dbSNP
rs1222320088 4867 dbSNP
rs1372867909 4868 dbSNP
rs1210933320 4871 dbSNP
rs1303851030 4872 dbSNP
rs1416937670 4881 dbSNP
rs938659861 4890 dbSNP
rs985903545 4891 dbSNP
rs1445780636 4898 dbSNP
rs1053107374 4900 dbSNP
rs1420820254 4901 dbSNP
rs149924960 4902 dbSNP
rs1423749910 4908 dbSNP
rs1011653984 4911 dbSNP
rs1418209764 4914 dbSNP
rs1414004304 4919 dbSNP
rs186580738 4920 dbSNP
rs1419737131 4925 dbSNP
rs900638574 4933 dbSNP
rs386678904 4936 dbSNP
rs535728597 4936 dbSNP
rs145024459 4937 dbSNP
rs298975 4939 dbSNP
rs1213715310 4948 dbSNP
rs1047237962 4949 dbSNP
rs1294091814 4960 dbSNP
rs907370574 4965 dbSNP
rs1003335907 4966 dbSNP
rs1383861131 4967 dbSNP
rs1034430878 4973 dbSNP
rs1387766731 4975 dbSNP
rs1286621554 4999 dbSNP
rs1452345439 5000 dbSNP
rs954924956 5014 dbSNP
rs1300059388 5018 dbSNP
rs1350145889 5034 dbSNP
rs1166590960 5035 dbSNP
rs572083067 5038 dbSNP
rs894591213 5041 dbSNP
rs771940690 5047 dbSNP
rs1194112999 5053 dbSNP
rs1341242878 5056 dbSNP
rs1430298304 5069 dbSNP
rs1414364367 5071 dbSNP
rs1291717188 5073 dbSNP
rs1203501177 5076 dbSNP
rs1323864256 5080 dbSNP
rs1008338940 5084 dbSNP
rs1015253425 5085 dbSNP
rs566269247 5090 dbSNP
rs1207443329 5092 dbSNP
rs1273009593 5095 dbSNP
rs1228534350 5101 dbSNP
rs1263242470 5103 dbSNP
rs1485088275 5106 dbSNP
rs1185334099 5110 dbSNP
rs1367758440 5111 dbSNP
rs1327296486 5113 dbSNP
rs1259268386 5117 dbSNP
rs1459610052 5125 dbSNP
rs1021611085 5126 dbSNP
rs1180748893 5128 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCCGUCCAAGGACCUAGUa 5'
            | |::||    ||||||| 
Target 5' --AUGUGGG----UGGAUCAc 3'
1 - 15
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000388822.5 | 3UTR | UGUGGGUGGAUCACUUGAGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000388822.5 | 3UTR | AUGUGGGUGGAUCACUUGAGGUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.462 1.2e-2 -0.264 1.1e-1 24 Click to see details
GSE27834 Pluripotent stem cells 0.5 2.4e-2 0.394 6.6e-2 16 Click to see details
GSE42095 Differentiated embryonic stem cells 0.367 4.2e-2 0.000 5.0e-1 23 Click to see details
GSE28260 Renal cortex and medulla 0.475 5.0e-2 0.438 6.7e-2 13 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.3 7.3e-2 -0.277 9.0e-2 25 Click to see details
GSE38226 Liver fibrosis 0.276 1.1e-1 0.217 1.7e-1 21 Click to see details
GSE19350 CNS germ cell tumors -0.309 1.6e-1 0.056 4.3e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells 0.204 1.7e-1 0.114 3.0e-1 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.19 2.1e-1 -0.319 8.5e-2 20 Click to see details
GSE21849 B cell lymphoma 0.153 2.1e-1 0.041 4.2e-1 29 Click to see details
GSE17306 Multiple myeloma -0.104 2.4e-1 -0.041 3.9e-1 49 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.14 2.5e-1 -0.235 1.3e-1 25 Click to see details
GSE19783 ER+ ER+ breast cancer 0.144 2.7e-1 0.095 3.5e-1 20 Click to see details
GSE19783 ER- ER- breast cancer -0.065 2.8e-1 -0.072 2.6e-1 79 Click to see details
GSE32688 Pancreatic cancer -0.078 3.4e-1 -0.041 4.1e-1 32 Click to see details
GSE19536 Breast cancer -0.033 3.7e-1 -0.003 4.9e-1 100 Click to see details
GSE14794 Lymphoblastoid cells -0.018 4.3e-1 -0.035 3.7e-1 90 Click to see details
GSE21687 Ependynoma primary tumors -0.002 4.9e-1 -0.073 2.8e-1 64 Click to see details
GSE21687 Ependynoma primary tumors -0.002 4.9e-1 -0.073 2.8e-1 64 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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