pre-miRNA Information
pre-miRNA hsa-mir-4446   
Genomic Coordinates chr3: 113594876 - 113594942
Description Homo sapiens miR-4446 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4446-5p
Sequence 8| AUUUCCCUGCCAUUCCCUUGGC |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1356015605 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LARP1   
Synonyms LARP
Description La ribonucleoprotein domain family member 1
Transcript NM_015315   
Expression
Putative miRNA Targets on LARP1
3'UTR of LARP1
(miRNA target sites are highlighted)
>LARP1|NM_015315|3'UTR
   1 AAAGCTCCTTAGCCCTGGGGCTTGAGGGGGGAAAGGGGTAGGGTGGGTAAGAGTCCATGGGGGTGCCCAGTCCCAGGAGA
  81 GGGGACAATGAAGGGACAGGCCTGGAGTTACTAGGACAGGCCTTTGTGCTGAGTAGCAATGTATACACCATTTGGGCTAT
 161 CAGAGGTACCCCTGGGCAGGAGCCTCTACATCCCCTTCCCCCTCCTCTCTCCATGACTCTTGACATCCTAGCTTCTTCTA
 241 AGGGGGGAGGGAAAGGGGGGAGATTTTTATATATATATACATATATATATATCAAGTTTTAAATTATTGATAGTTCATCT
 321 GGATTACCAAAATCACTCTGCAGCCCTGCCCGAGGCTAGTAGGCTGCAACCCTGGTCCCCACCCCTAACCTCCTGCTCCC
 401 CCTCAAGCCAACTATGCAGCCCACAAGAAGGCCCTGCGGGCCCCCCCATTGCCCAGCACTGTCTCATAGAAGGCTCTGGT
 481 GGTACCTCTGGGCCCCAGGAGCATCAGCCCCTTGATCATCTGGGGTTTGTCATCACCATATTTTCTCCCTGCTGTTCCCA
 561 CCATGCCCTTCTGCCATCTTCTGGGAGAAGGAAACCAAAGGATCTAAAACTGGGGTTTGGGGGAAGGTTTCAGCCTCTCC
 641 CCACTCCCCTTGCCCCACACCCTTTACTCCCCAGCCCAGAGAGACGCTGCTTTTACCAGGAAAGACTATTGAAAGATGTT
 721 TTATTTTATTTTTCTCTGACCTTTCCATCCTTGAAAAAATGGGGAAAAAAGAAGAAAAAAGACAAAATCGACCATAAAAG
 801 ACCAAAAAAAAAAAAAAAATCAGAAAACCCCCACCTAATCCACAGAAAGTAATGTCTTTCCCCTCCCCTTGGAATTTTTG
 881 TTTTGTTTTTGGAAATAATATTTTTTTAAAAGTTGCCTTATTGTGGAGCGGGAATCTGAAATACCCAAATGCCTGTTTTC
 961 CTCGGTGGAGTCAACCCGAAGAGCTCCCACCTTCTCTGGATGTGCCTGGGCTTGGACTGGCTAGAATCTTTCTCTGGACT
1041 GTTGCATGTACAGTGCCTCCATCCTGGAGGCAAGAGAGTTGGGAGTGGCTCGAATCAGAGCCGTGCCCAAGATATCCCTG
1121 CTGTTGCATCGTTTGAAGCTGACGTCCTGTGTCTGTACACTGCTGCCACTGTTGTGTCCTCGCTCTGCTTGCTGTTGCCT
1201 CACGCCAGGCCCCGTCCTGCCGTGACACCCTTCATCCTACCCTTGGAACCCCAAGGCCAAGTTGGTTCAAACTGTTGGAG
1281 AACAGAGTTGGCCTGCATCTGGAACACACTTGTCCTCAGCTTACCATCTCCTCACACCCCAGAGTGGAAAGGTGAACACC
1361 TGCAGCTGAGGCTTGGAAACGTTTCTTGTGTTGCCCTGAAAAATCTTTGAGACCTCAGGGAGGCTCTGTCTCTCTTAAAA
1441 GGTGGAGAAAGATGCCATTCTCTCCCTAAGGTCTGGTGGAGTCTCCCCATCTTGCATACCCTTCTGCAAGCCATCTATCT
1521 CTGCTCACTCTCCAATTGACCCGCCTGGGAACAAGGGATGAGGAGGAGTTGGGGGCTGGGGGGAATCCTGCCAGTTGGTG
1601 AAGCCCTGTGGCAGGAAGGTATATGTGGACATAGAGTATACCTGATTCTCTTTCTTCAGCCACTGACTGCTTGGGTTGGG
1681 CTGTGAATGATAATGGAATGGCTGGAGTCTGCTGTTGTCAGAAGGCAGGGAGGGTGATGAAGGACTGACCCACATGGACT
1761 GGGATGTGTGTCGGTTATGGGCATGACTGCACGTTCACTCTCAGTGGGATCTGGGCAACATGGAGTTCATTGTCCTGTTG
1841 CTTACTTACTGCAATGTCTTTGGCCCTCCTTTTCAACTGGTTCCTCTGTTGGGCCCAAAGGTTGGGAGTAGGAGACAGTA
1921 TCCCAGGCTGACAAGGGCTTGCCCTTTACCTTGGGCACCTTGTTAATTTTTAGCCTGTGCCCTTCCCCACCTTTGCCCTC
2001 CCAGTGGTTGGTATGTGGGAAGCCCATCTCAGTTCCTGTGACTTCATGTCTCAAACCAAGGATGAGCGTCTGGTCTCTGC
2081 TATGATGGTGGTATCCGAGGCCTTTCCCTGCCCAGTCTGGTGCCTGCCCCACATTGTACCGGACACTGGATTCCTGGACC
2161 CCCTTCTCCTTTCCTTTCTTTCCTTCAGGTCACGCAGCCCTGTACTGTATCCAGCACCACAGAAACCTCAGTGTTTTTCC
2241 TCTGCTGGTTTGGGGCACAAGGAAGCCTTAGGGTATGGGGAAAGGCTGTTATTACCTAGAGTTTACTCCCAGGCCAGGGG
2321 GCTGCCATCTTCTTCACAGACATCCCTGAAAGGAAGCCCCTTTGGGGCAGGGAGGTGAGGACTTCATCTCAACATCGGCT
2401 GGTGGTTGGTAGGGGAGCTTTTTCTTTTCTTTCCTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGGTAACATGTTAG
2481 GAGTTAATGTTGCAAAGAGTAGTTTACATCTTCACTTTCTGAAGACACTTGAATTTAGGACCGATGTATCTGTGACAAGC
2561 ATGCCAGAAGTGGCAGGGGCCATCAGGGCTAACCACTTCACACCTACCATCGTCCCATGGGGATCCAAGACCTGAGATAA
2641 AGCAACAGCCTGCCCAGATCCCTCTGTTCATCCTATCCCTTCCAAGGTTGGTCCATGCCAACATAACCTCTGGGCATCAG
2721 ACATCAGCAGGTCTGTGTGCCTCAGCCCTGTTAAGGGGCAGGTTTCTCTTTAGCCCTCTTCCTGCACTTGGGAGCAAAGG
2801 CACTACCAGTAGAGAAGGGCCATCCAGCCGTGCCCCAGCCTGGACCCCTGGGGCTCAGATAGAGGTGCTGAGCCCCTGTG
2881 TCAAAGTTGTTAAATGTTTTTGTTTTGTTCCATTGTAGCTCTTTTTTTTTTTTTTTCCCCTTTCCTGGTGATTGATTTTA
2961 CAAAAGAAAGTAAGCTGCTTAGAAGGCCCTGGAAGGGAAGTGAGGAGGAGGGACAAGGAAGATGACTAGTTACGGAGGGT
3041 GAGGGTTGTTTTTTGCCAAAAAGCCTGGGTAGAGTGATCTGAATTATCTGGCACCCTCCTGAATGGAACCCCAGAGTACC
3121 TCCTGTGTGGAAGGGTCCCTGGATTTTCCCTAACACCCACCCTCTCCCCCTTCAGCCATGCTGATGGCAGAGAAGATAAG
3201 AACTTGGAGCCCATTTCTCACTGGAGAGGAAAACTTGTCATCTGGCTTTGCGGAGAAGGTTCCACCTTACGCTCGTAGTA
3281 CATTATCTTTACTATGTGCTAGGATATCATATTTAAAAGGACAAAAAAATGTAAAATACTTGAATGAGCTTGTATTATAA
3361 CATTAATATTATTGAGAGTATCTGCTTTCCAGGCTGAAGTGATTCATTCATTATTCTAGTCCTGCTTTAGTCCTTTGTAA
3441 TTTGTGGTAATTATGCTTTTCTTTTTAATACAAAAAAATGTATAAAAATAAACACTTGAAAAGGCAAAATAAAAAAAAAA
3521 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgGUUCCCUUACCGUCCCUUUa 5'
            :|||||   || ||||||| 
Target 5' tcTAAGGG---GGGAGGGAAAg 3'
237 - 255 161.00 -22.50
2
miRNA  3' cggUUCCCUUACCGUCCCUUUa 5'
             ||||   ||| ||||||: 
Target 5' tagAAGGCCCTGGAAGGGAAGt 3'
2980 - 3001 147.00 -17.40
3
miRNA  3' cgGUUCCCUUAC-CGUCCCUUUa 5'
            | :|||  || | :|||||| 
Target 5' ccCTGGGGCTTGAGGGGGGAAAg 3'
13 - 35 140.00 -19.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30115541 7 COSMIC
COSN31563894 18 COSMIC
COSN27866671 20 COSMIC
COSN25699685 37 COSMIC
COSN31526512 64 COSMIC
COSN24925038 116 COSMIC
COSN31562906 143 COSMIC
COSN31544323 263 COSMIC
COSN31518111 280 COSMIC
COSN19432232 385 COSMIC
COSN16134045 462 COSMIC
COSN6868876 678 COSMIC
COSN8205839 680 COSMIC
COSN26496574 693 COSMIC
COSN31479970 712 COSMIC
COSN23972302 772 COSMIC
COSN20091291 796 COSMIC
COSN31547038 846 COSMIC
COSN9011784 874 COSMIC
COSN26648457 881 COSMIC
COSN26647381 886 COSMIC
COSN31571160 929 COSMIC
COSN32056773 997 COSMIC
COSN2078449 1053 COSMIC
COSN26632785 1093 COSMIC
COSN17183418 1116 COSMIC
COSN31594046 1167 COSMIC
COSN16272120 1697 COSMIC
COSN2490033 1870 COSMIC
COSN32057734 2023 COSMIC
COSN31481712 2069 COSMIC
COSN19057732 2130 COSMIC
COSN31531283 2204 COSMIC
COSN17245093 2240 COSMIC
COSN8205840 2241 COSMIC
COSN24300948 2325 COSMIC
COSN27881900 2425 COSMIC
COSN28657780 2436 COSMIC
COSN31594748 2444 COSMIC
COSN6584242 2576 COSMIC
COSN8492129 2637 COSMIC
COSN27242719 2937 COSMIC
COSN28969651 2937 COSMIC
COSN20102110 2941 COSMIC
COSN31962504 2955 COSMIC
COSN31523039 3217 COSMIC
COSN28688892 3224 COSMIC
COSN31531257 3356 COSMIC
COSN21333071 3383 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1204901369 3 dbSNP
rs779491639 5 dbSNP
rs1469976366 15 dbSNP
rs763370671 16 dbSNP
rs1167278632 19 dbSNP
rs531581939 22 dbSNP
rs772634440 23 dbSNP
rs548301464 24 dbSNP
rs766737574 26 dbSNP
rs201424219 27 dbSNP
rs372762868 28 dbSNP
rs1451632010 30 dbSNP
rs1157752862 33 dbSNP
rs774409374 35 dbSNP
rs759453932 42 dbSNP
rs1323425197 43 dbSNP
rs1369789295 44 dbSNP
rs1450052696 46 dbSNP
rs1446803792 47 dbSNP
rs754062977 49 dbSNP
rs375884763 51 dbSNP
rs1355155486 55 dbSNP
rs34443110 55 dbSNP
rs993165428 64 dbSNP
rs1398277308 66 dbSNP
rs1255011987 67 dbSNP
rs929500683 76 dbSNP
rs863649 80 dbSNP
rs952246201 84 dbSNP
rs1263720343 94 dbSNP
rs992999303 103 dbSNP
rs1409323453 104 dbSNP
rs1160857681 106 dbSNP
rs1201875522 120 dbSNP
rs1472648419 140 dbSNP
rs1236351432 143 dbSNP
rs572716720 144 dbSNP
rs554029908 151 dbSNP
rs1006826220 156 dbSNP
rs1017844382 161 dbSNP
rs145895099 166 dbSNP
rs1256676702 171 dbSNP
rs976350812 177 dbSNP
rs948964255 183 dbSNP
rs923229160 185 dbSNP
rs1270276874 190 dbSNP
rs539719325 202 dbSNP
rs191774363 203 dbSNP
rs775074274 204 dbSNP
rs1247703762 205 dbSNP
rs1341591341 206 dbSNP
rs935739069 211 dbSNP
rs1052909738 214 dbSNP
rs925397042 215 dbSNP
rs935830406 234 dbSNP
rs1054723166 235 dbSNP
rs1160944485 240 dbSNP
rs1174066486 240 dbSNP
rs1412517608 240 dbSNP
rs1377184419 242 dbSNP
rs61080465 243 dbSNP
rs915757734 244 dbSNP
rs138736921 255 dbSNP
rs35367991 255 dbSNP
rs948613117 256 dbSNP
rs889677145 257 dbSNP
rs1209654946 260 dbSNP
rs1451243353 265 dbSNP
rs1006784818 268 dbSNP
rs1211722236 268 dbSNP
rs1357079197 270 dbSNP
rs1045625135 272 dbSNP
rs1397829498 274 dbSNP
rs568661494 277 dbSNP
rs1298780873 279 dbSNP
rs906872523 279 dbSNP
rs536123310 280 dbSNP
rs148093941 281 dbSNP
rs1445787560 285 dbSNP
rs1331878031 286 dbSNP
rs1253181332 290 dbSNP
rs1321109738 292 dbSNP
rs375125389 295 dbSNP
rs993165309 298 dbSNP
rs1379066224 304 dbSNP
rs1167928953 321 dbSNP
rs1438215201 328 dbSNP
rs963444713 338 dbSNP
rs764844107 344 dbSNP
rs544206105 346 dbSNP
rs1245221461 349 dbSNP
rs1223996790 352 dbSNP
rs1452290628 360 dbSNP
rs950788072 361 dbSNP
rs1203705883 370 dbSNP
rs1331224028 371 dbSNP
rs1344929716 372 dbSNP
rs1275890102 375 dbSNP
rs1234962121 376 dbSNP
rs561476587 379 dbSNP
rs1365871039 381 dbSNP
rs1005984050 382 dbSNP
rs1438130810 394 dbSNP
rs1345650310 396 dbSNP
rs574576917 402 dbSNP
rs964909980 403 dbSNP
rs1481891490 420 dbSNP
rs997734285 426 dbSNP
rs368500851 427 dbSNP
rs1422759942 428 dbSNP
rs970281535 438 dbSNP
rs966697470 439 dbSNP
rs1433901454 440 dbSNP
rs1178338170 441 dbSNP
rs1484043245 441 dbSNP
rs540430458 442 dbSNP
rs935639904 443 dbSNP
rs925376653 444 dbSNP
rs1287249819 446 dbSNP
rs1171153767 447 dbSNP
rs1298717101 455 dbSNP
rs958332169 457 dbSNP
rs1357269002 460 dbSNP
rs1177961859 466 dbSNP
rs554514374 467 dbSNP
rs915687724 471 dbSNP
rs183556292 474 dbSNP
rs1251301039 477 dbSNP
rs1181839068 486 dbSNP
rs1482555826 489 dbSNP
rs1292942009 495 dbSNP
rs1239651244 507 dbSNP
rs1390812122 508 dbSNP
rs1204720369 510 dbSNP
rs188603327 512 dbSNP
rs1226153566 516 dbSNP
rs749838824 519 dbSNP
rs759000543 521 dbSNP
rs1047821751 525 dbSNP
rs887470976 530 dbSNP
rs1376891418 551 dbSNP
rs941736938 555 dbSNP
rs545812817 559 dbSNP
rs1387585730 564 dbSNP
rs994815526 572 dbSNP
rs1038790549 578 dbSNP
rs778154372 583 dbSNP
rs1458998481 588 dbSNP
rs1364518357 611 dbSNP
rs1164171072 614 dbSNP
rs1422068234 625 dbSNP
rs747450234 628 dbSNP
rs900659139 632 dbSNP
rs1184703632 636 dbSNP
rs997722937 642 dbSNP
rs757649376 645 dbSNP
rs1265382336 649 dbSNP
rs371765717 653 dbSNP
rs902795906 655 dbSNP
rs999790486 657 dbSNP
rs1032733107 659 dbSNP
rs1348761608 669 dbSNP
rs958064529 669 dbSNP
rs991275990 674 dbSNP
rs774129157 675 dbSNP
rs969848374 686 dbSNP
rs981270592 687 dbSNP
rs1246585877 689 dbSNP
rs1364256747 690 dbSNP
rs1801452 696 dbSNP
rs539842150 696 dbSNP
rs928485754 697 dbSNP
rs112581556 699 dbSNP
rs929201932 709 dbSNP
rs1293103977 710 dbSNP
rs1456479706 715 dbSNP
rs983391214 716 dbSNP
rs1163921441 717 dbSNP
rs1350407665 719 dbSNP
rs908837235 724 dbSNP
rs13165875 735 dbSNP
rs13185950 736 dbSNP
rs988471126 737 dbSNP
rs13185956 745 dbSNP
rs1262019367 746 dbSNP
rs1190231877 754 dbSNP
rs1359386183 759 dbSNP
rs1293295779 765 dbSNP
rs919290154 772 dbSNP
rs912922906 773 dbSNP
rs933562099 775 dbSNP
rs987782893 782 dbSNP
rs1326761098 784 dbSNP
rs1299717260 788 dbSNP
rs1364453728 791 dbSNP
rs1226968749 794 dbSNP
rs1385282082 795 dbSNP
rs910674814 796 dbSNP
rs1303831224 797 dbSNP
rs1322877429 798 dbSNP
rs1369257488 799 dbSNP
rs1248863715 801 dbSNP
rs1462842514 802 dbSNP
rs1174974728 804 dbSNP
rs1377393417 804 dbSNP
rs1482411070 804 dbSNP
rs759947747 804 dbSNP
rs1249560750 805 dbSNP
rs1197447288 811 dbSNP
rs1283933690 818 dbSNP
rs1488044511 822 dbSNP
rs943559165 824 dbSNP
rs941740399 825 dbSNP
rs1039191058 827 dbSNP
rs1325930088 829 dbSNP
rs900276846 830 dbSNP
rs1050836199 833 dbSNP
rs1409308924 836 dbSNP
rs762128384 850 dbSNP
rs1348665945 864 dbSNP
rs1331506805 866 dbSNP
rs1244073764 867 dbSNP
rs911052463 868 dbSNP
rs1402016254 876 dbSNP
rs1482116963 877 dbSNP
rs933461848 888 dbSNP
rs1051903594 892 dbSNP
rs1181085279 901 dbSNP
rs1467842921 901 dbSNP
rs1038620008 902 dbSNP
rs1471998781 908 dbSNP
rs879413608 909 dbSNP
rs994511394 923 dbSNP
rs1438316486 924 dbSNP
rs562777206 930 dbSNP
rs1419790200 931 dbSNP
rs1445792595 935 dbSNP
rs1198525986 940 dbSNP
rs1462447680 951 dbSNP
rs1000145322 956 dbSNP
rs1032600422 964 dbSNP
rs193115619 965 dbSNP
rs1240469830 972 dbSNP
rs1357099152 976 dbSNP
rs185584929 978 dbSNP
rs558175972 992 dbSNP
rs1407252675 1000 dbSNP
rs1337032064 1001 dbSNP
rs1456361908 1002 dbSNP
rs1385885096 1006 dbSNP
rs1159795931 1007 dbSNP
rs867386315 1011 dbSNP
rs755016690 1012 dbSNP
rs1024354660 1013 dbSNP
rs1185276279 1014 dbSNP
rs1024129719 1016 dbSNP
rs1446263945 1017 dbSNP
rs1302613380 1023 dbSNP
rs1463709581 1030 dbSNP
rs905953122 1033 dbSNP
rs1205807265 1039 dbSNP
rs970759432 1043 dbSNP
rs1282978518 1046 dbSNP
rs1248771220 1051 dbSNP
rs1455050775 1056 dbSNP
rs1307792249 1057 dbSNP
rs1297310603 1059 dbSNP
rs1433257456 1065 dbSNP
rs1353009378 1070 dbSNP
rs1324333208 1072 dbSNP
rs1319824798 1077 dbSNP
rs1400811839 1080 dbSNP
rs1240976521 1085 dbSNP
rs1033612334 1092 dbSNP
rs1161646939 1097 dbSNP
rs1310637260 1099 dbSNP
rs568223126 1104 dbSNP
rs375073844 1115 dbSNP
rs1035448756 1118 dbSNP
rs989496285 1124 dbSNP
rs950562653 1127 dbSNP
rs1451152531 1128 dbSNP
rs527734797 1131 dbSNP
rs1019898957 1132 dbSNP
rs1439731370 1137 dbSNP
rs955081643 1144 dbSNP
rs986433066 1148 dbSNP
rs749196667 1150 dbSNP
rs983765438 1154 dbSNP
rs1271609067 1156 dbSNP
rs1413527097 1163 dbSNP
rs1430978999 1165 dbSNP
rs1176426098 1167 dbSNP
rs1300742129 1169 dbSNP
rs1406175469 1172 dbSNP
rs1366130914 1179 dbSNP
rs547992954 1180 dbSNP
rs1167833807 1182 dbSNP
rs1408033995 1183 dbSNP
rs1421354975 1184 dbSNP
rs909170859 1186 dbSNP
rs1477817402 1194 dbSNP
rs1266953068 1195 dbSNP
rs1201697853 1203 dbSNP
rs570925556 1204 dbSNP
rs974462646 1205 dbSNP
rs188175610 1208 dbSNP
rs1203590625 1214 dbSNP
rs550236847 1215 dbSNP
rs1315417379 1221 dbSNP
rs570360476 1222 dbSNP
rs1051509759 1223 dbSNP
rs576445807 1238 dbSNP
rs896404802 1253 dbSNP
rs1443618182 1264 dbSNP
rs949995328 1277 dbSNP
rs191135796 1278 dbSNP
rs1365661466 1284 dbSNP
rs905921639 1284 dbSNP
rs1307387606 1286 dbSNP
rs554565342 1293 dbSNP
rs1279618037 1298 dbSNP
rs138426275 1313 dbSNP
rs894088253 1317 dbSNP
rs1427483629 1327 dbSNP
rs1178800257 1329 dbSNP
rs1480826116 1330 dbSNP
rs1411298245 1332 dbSNP
rs1176043174 1338 dbSNP
rs1196561664 1339 dbSNP
rs1233897178 1340 dbSNP
rs1209873540 1345 dbSNP
rs1441002303 1350 dbSNP
rs1002048689 1351 dbSNP
rs1033167520 1353 dbSNP
rs1323690960 1354 dbSNP
rs183601268 1358 dbSNP
rs1222074677 1360 dbSNP
rs1375455295 1362 dbSNP
rs1458141815 1366 dbSNP
rs1280013513 1374 dbSNP
rs1447050898 1389 dbSNP
rs1183954307 1395 dbSNP
rs1244472662 1405 dbSNP
rs769872845 1408 dbSNP
rs1338997399 1414 dbSNP
rs1470417186 1417 dbSNP
rs893328303 1418 dbSNP
rs1157018498 1425 dbSNP
rs749109471 1427 dbSNP
rs1010485439 1429 dbSNP
rs1205244736 1429 dbSNP
rs1245336084 1429 dbSNP
rs1020454911 1432 dbSNP
rs955630886 1434 dbSNP
rs1213057606 1441 dbSNP
rs553815169 1445 dbSNP
rs1430984776 1457 dbSNP
rs1284914998 1459 dbSNP
rs986402062 1463 dbSNP
rs1045023619 1472 dbSNP
rs1017916242 1477 dbSNP
rs1316883795 1480 dbSNP
rs112007170 1485 dbSNP
rs1169018382 1487 dbSNP
rs906546586 1489 dbSNP
rs1287282820 1490 dbSNP
rs963811980 1492 dbSNP
rs974260226 1500 dbSNP
rs368071294 1518 dbSNP
rs982617611 1518 dbSNP
rs1184602492 1522 dbSNP
rs1331527756 1526 dbSNP
rs188720675 1536 dbSNP
rs1226509766 1543 dbSNP
rs950551713 1544 dbSNP
rs72797599 1550 dbSNP
rs778869070 1555 dbSNP
rs937434103 1556 dbSNP
rs1293390049 1560 dbSNP
rs1016581084 1567 dbSNP
rs1341070191 1569 dbSNP
rs1321186969 1571 dbSNP
rs149299467 1575 dbSNP
rs1277299390 1579 dbSNP
rs1363197212 1584 dbSNP
rs1010327236 1586 dbSNP
rs1318418453 1595 dbSNP
rs975083131 1599 dbSNP
rs921557617 1614 dbSNP
rs1197471101 1622 dbSNP
rs1041883231 1631 dbSNP
rs954366118 1636 dbSNP
rs1371580911 1642 dbSNP
rs1221706852 1643 dbSNP
rs1008459689 1645 dbSNP
rs1262249949 1649 dbSNP
rs1489853337 1654 dbSNP
rs987209867 1654 dbSNP
rs923723297 1658 dbSNP
rs1222624739 1670 dbSNP
rs1476616108 1675 dbSNP
rs935486857 1677 dbSNP
rs1192566230 1680 dbSNP
rs995267810 1684 dbSNP
rs1229984298 1689 dbSNP
rs1308438780 1693 dbSNP
rs376674339 1695 dbSNP
rs748100423 1696 dbSNP
rs1222193294 1702 dbSNP
rs1347974587 1706 dbSNP
rs768718501 1713 dbSNP
rs915416079 1726 dbSNP
rs1027113625 1727 dbSNP
rs1394521398 1733 dbSNP
rs575889543 1734 dbSNP
rs368814622 1735 dbSNP
rs1462741041 1741 dbSNP
rs1045298475 1747 dbSNP
rs982586687 1748 dbSNP
rs906536534 1764 dbSNP
rs144521512 1773 dbSNP
rs1047118782 1774 dbSNP
rs770981571 1775 dbSNP
rs1303813341 1782 dbSNP
rs980717410 1783 dbSNP
rs530218894 1793 dbSNP
rs574589195 1794 dbSNP
rs1367572157 1798 dbSNP
rs532262929 1803 dbSNP
rs868848183 1805 dbSNP
rs898994082 1808 dbSNP
rs541678073 1810 dbSNP
rs1284491863 1811 dbSNP
rs1028947466 1812 dbSNP
rs1239046832 1814 dbSNP
rs1054470556 1815 dbSNP
rs914612877 1818 dbSNP
rs745878081 1820 dbSNP
rs1405667301 1822 dbSNP
rs946154627 1829 dbSNP
rs1326748339 1831 dbSNP
rs1408120063 1831 dbSNP
rs561720920 1836 dbSNP
rs1469612951 1840 dbSNP
rs891324472 1841 dbSNP
rs1183401292 1844 dbSNP
rs527797605 1845 dbSNP
rs1282320500 1850 dbSNP
rs560017442 1854 dbSNP
rs1182063342 1855 dbSNP
rs1462933546 1857 dbSNP
rs1205037817 1859 dbSNP
rs1264208489 1859 dbSNP
rs527626334 1864 dbSNP
rs1262527720 1869 dbSNP
rs1239888218 1877 dbSNP
rs547612494 1884 dbSNP
rs1313191266 1894 dbSNP
rs1454843401 1895 dbSNP
rs1293310817 1903 dbSNP
rs1487053377 1908 dbSNP
rs1384704697 1922 dbSNP
rs1334624088 1928 dbSNP
rs900087654 1931 dbSNP
rs1382732676 1935 dbSNP
rs1159740630 1936 dbSNP
rs1453864251 1937 dbSNP
rs564582986 1938 dbSNP
rs1030687793 1946 dbSNP
rs1215364555 1948 dbSNP
rs1244096517 1949 dbSNP
rs1192958920 1950 dbSNP
rs1445727889 1959 dbSNP
rs770162721 1960 dbSNP
rs1205720985 1961 dbSNP
rs533406501 1962 dbSNP
rs1447898766 1964 dbSNP
rs1289752111 1965 dbSNP
rs550341373 1967 dbSNP
rs1195807174 1969 dbSNP
rs1236136686 1975 dbSNP
rs951091160 1978 dbSNP
rs775824795 1979 dbSNP
rs1024805474 1982 dbSNP
rs1400603011 1984 dbSNP
rs970588795 1986 dbSNP
rs115484593 1992 dbSNP
rs926498036 2019 dbSNP
rs1387150941 2020 dbSNP
rs78052838 2023 dbSNP
rs1375208671 2024 dbSNP
rs148493697 2037 dbSNP
rs928244613 2046 dbSNP
rs1266819297 2047 dbSNP
rs181193493 2049 dbSNP
rs1490559411 2052 dbSNP
rs1047020812 2057 dbSNP
rs1213103091 2065 dbSNP
rs1337191562 2065 dbSNP
rs1041820630 2068 dbSNP
rs912729718 2069 dbSNP
rs887125995 2071 dbSNP
rs1039883145 2072 dbSNP
rs941413954 2075 dbSNP
rs931603506 2078 dbSNP
rs1453264487 2079 dbSNP
rs1317089277 2081 dbSNP
rs1038866751 2097 dbSNP
rs898987836 2098 dbSNP
rs1260897215 2099 dbSNP
rs996049061 2110 dbSNP
rs1028895075 2112 dbSNP
rs1232434420 2115 dbSNP
rs1198412787 2118 dbSNP
rs1003960997 2128 dbSNP
rs1439820915 2130 dbSNP
rs890350627 2131 dbSNP
rs1199063863 2134 dbSNP
rs1184689184 2141 dbSNP
rs774789294 2142 dbSNP
rs906289559 2148 dbSNP
rs762389256 2149 dbSNP
rs1178129714 2151 dbSNP
rs1002418490 2162 dbSNP
rs1455516835 2167 dbSNP
rs112950502 2169 dbSNP
rs1171092447 2170 dbSNP
rs1008838650 2183 dbSNP
rs1332401170 2187 dbSNP
rs533760256 2194 dbSNP
rs376735356 2195 dbSNP
rs1179196363 2197 dbSNP
rs1030629747 2201 dbSNP
rs1470126034 2207 dbSNP
rs553630279 2208 dbSNP
rs1338575673 2212 dbSNP
rs1471253464 2215 dbSNP
rs1239033779 2240 dbSNP
rs958178104 2249 dbSNP
rs1178947870 2252 dbSNP
rs956583274 2261 dbSNP
rs1460701608 2266 dbSNP
rs142653236 2276 dbSNP
rs35360321 2286 dbSNP
rs1022503064 2289 dbSNP
rs555891341 2290 dbSNP
rs575955616 2293 dbSNP
rs1221595113 2298 dbSNP
rs980935175 2302 dbSNP
rs1309530748 2307 dbSNP
rs759301565 2309 dbSNP
rs1307047532 2314 dbSNP
rs749976607 2317 dbSNP
rs541687763 2322 dbSNP
rs1230593345 2330 dbSNP
rs939581198 2338 dbSNP
rs1449348322 2341 dbSNP
rs1255064416 2349 dbSNP
rs1323194896 2354 dbSNP
rs1063410 2357 dbSNP
rs1156940301 2358 dbSNP
rs561635962 2360 dbSNP
rs186906505 2371 dbSNP
rs975966503 2376 dbSNP
rs921469455 2378 dbSNP
rs1265493079 2385 dbSNP
rs931548346 2391 dbSNP
rs1213640692 2397 dbSNP
rs764782217 2398 dbSNP
rs532309743 2402 dbSNP
rs1195775498 2404 dbSNP
rs1048678859 2406 dbSNP
rs1244754859 2415 dbSNP
rs887359101 2416 dbSNP
rs1251314594 2420 dbSNP
rs1361791618 2430 dbSNP
rs941390483 2433 dbSNP
rs1287626398 2434 dbSNP
rs1046110301 2435 dbSNP
rs1387336514 2435 dbSNP
rs1422929335 2435 dbSNP
rs531283238 2435 dbSNP
rs1033918208 2439 dbSNP
rs1166573754 2439 dbSNP
rs548295428 2439 dbSNP
rs878916083 2439 dbSNP
rs1420966519 2451 dbSNP
rs1038449505 2462 dbSNP
rs893675792 2463 dbSNP
rs903624572 2465 dbSNP
rs1266851062 2467 dbSNP
rs1245150000 2476 dbSNP
rs1307267873 2490 dbSNP
rs1293939854 2494 dbSNP
rs1011239502 2498 dbSNP
rs1480611931 2509 dbSNP
rs1282664327 2519 dbSNP
rs752334623 2543 dbSNP
rs932737012 2544 dbSNP
rs1461719002 2548 dbSNP
rs1353680336 2560 dbSNP
rs1050230323 2561 dbSNP
rs1168099914 2562 dbSNP
rs890298354 2568 dbSNP
rs1424265361 2569 dbSNP
rs1197986493 2571 dbSNP
rs753463692 2580 dbSNP
rs549865030 2583 dbSNP
rs1008787793 2589 dbSNP
rs541413218 2591 dbSNP
rs1052815625 2599 dbSNP
rs549156456 2600 dbSNP
rs1011013256 2612 dbSNP
rs1249934703 2613 dbSNP
rs1200935991 2620 dbSNP
rs1319135912 2623 dbSNP
rs1022033243 2628 dbSNP
rs977367226 2630 dbSNP
rs533425442 2632 dbSNP
rs1345778941 2633 dbSNP
rs1225023089 2634 dbSNP
rs1019594881 2637 dbSNP
rs1285553007 2638 dbSNP
rs969081208 2647 dbSNP
rs559602336 2661 dbSNP
rs1296180651 2662 dbSNP
rs1316519020 2665 dbSNP
rs754823997 2676 dbSNP
rs975556716 2687 dbSNP
rs1252406566 2691 dbSNP
rs960867889 2694 dbSNP
rs1378829834 2695 dbSNP
rs1198991632 2696 dbSNP
rs921429442 2702 dbSNP
rs1180827389 2711 dbSNP
rs1458489675 2716 dbSNP
rs1268329029 2727 dbSNP
rs1262968174 2732 dbSNP
rs550401605 2734 dbSNP
rs1202300020 2748 dbSNP
rs1347793223 2755 dbSNP
rs1490565708 2761 dbSNP
rs1238439642 2762 dbSNP
rs983044660 2772 dbSNP
rs1311738699 2775 dbSNP
rs1377333929 2776 dbSNP
rs1335884542 2777 dbSNP
rs1201948554 2782 dbSNP
rs1404295892 2783 dbSNP
rs550354313 2787 dbSNP
rs908824234 2791 dbSNP
rs115701858 2792 dbSNP
rs974507303 2794 dbSNP
rs1170979714 2825 dbSNP
rs190101439 2826 dbSNP
rs1046080086 2829 dbSNP
rs932685986 2830 dbSNP
rs1051191431 2831 dbSNP
rs568520289 2834 dbSNP
rs1365706941 2835 dbSNP
rs893551067 2839 dbSNP
rs1484927396 2840 dbSNP
rs146312419 2845 dbSNP
rs1338809837 2846 dbSNP
rs944562883 2847 dbSNP
rs1214379013 2857 dbSNP
rs1314046807 2861 dbSNP
rs1052344356 2869 dbSNP
rs1342117576 2872 dbSNP
rs375198745 2875 dbSNP
rs1296857172 2876 dbSNP
rs1334735384 2876 dbSNP
rs1358042491 2877 dbSNP
rs1042218028 2879 dbSNP
rs1299535850 2892 dbSNP
rs1419881233 2899 dbSNP
rs902418074 2901 dbSNP
rs936428505 2903 dbSNP
rs1161986096 2907 dbSNP
rs1473976674 2908 dbSNP
rs1243301500 2910 dbSNP
rs1193076853 2911 dbSNP
rs1291126796 2917 dbSNP
rs1360332167 2918 dbSNP
rs1224933712 2921 dbSNP
rs1224324977 2922 dbSNP
rs1226556049 2922 dbSNP
rs1338367187 2922 dbSNP
rs1358182288 2922 dbSNP
rs879086520 2922 dbSNP
rs1279481202 2923 dbSNP
rs566372952 2925 dbSNP
rs1008796825 2929 dbSNP
rs1261311325 2935 dbSNP
rs1491583687 2936 dbSNP
rs1406787766 2937 dbSNP
rs1491405268 2937 dbSNP
rs200933898 2937 dbSNP
rs32427 2938 dbSNP
rs1263648603 2939 dbSNP
rs1421958259 2940 dbSNP
rs1162931094 2945 dbSNP
rs1480146217 2946 dbSNP
rs1385303231 2952 dbSNP
rs1201248821 2956 dbSNP
rs1452442248 2959 dbSNP
rs547326797 2962 dbSNP
rs1019563869 2964 dbSNP
rs1156412825 2968 dbSNP
rs965446459 2975 dbSNP
rs1359518930 2982 dbSNP
rs1344298057 3001 dbSNP
rs1431071947 3002 dbSNP
rs1438116571 3002 dbSNP
rs763554573 3006 dbSNP
rs758368644 3009 dbSNP
rs952920435 3013 dbSNP
rs1402986780 3014 dbSNP
rs1171989736 3027 dbSNP
rs1469780824 3028 dbSNP
rs984265208 3034 dbSNP
rs1043761900 3035 dbSNP
rs904869359 3036 dbSNP
rs529514491 3044 dbSNP
rs1180012070 3045 dbSNP
rs1001875122 3048 dbSNP
rs1199163156 3049 dbSNP
rs961635173 3049 dbSNP
rs1284089021 3050 dbSNP
rs1322770511 3052 dbSNP
rs182207664 3058 dbSNP
rs777521841 3060 dbSNP
rs960856713 3063 dbSNP
rs555956897 3079 dbSNP
rs1004810731 3086 dbSNP
rs1220465978 3088 dbSNP
rs1216833672 3093 dbSNP
rs1262254103 3110 dbSNP
rs1482189527 3112 dbSNP
rs1015832528 3119 dbSNP
rs1278581065 3121 dbSNP
rs766447417 3121 dbSNP
rs746000754 3123 dbSNP
rs186290335 3124 dbSNP
rs1243702671 3126 dbSNP
rs974356361 3131 dbSNP
rs1055190056 3134 dbSNP
rs1357945733 3136 dbSNP
rs1178247861 3139 dbSNP
rs1415110453 3154 dbSNP
rs921234367 3158 dbSNP
rs1157060054 3163 dbSNP
rs946437228 3179 dbSNP
rs1381895034 3180 dbSNP
rs1179045199 3181 dbSNP
rs1400918938 3189 dbSNP
rs1235668076 3197 dbSNP
rs1212234773 3198 dbSNP
rs1442479616 3201 dbSNP
rs1042217878 3221 dbSNP
rs954063027 3222 dbSNP
rs1355445101 3223 dbSNP
rs1310379446 3230 dbSNP
rs535252852 3235 dbSNP
rs986880173 3241 dbSNP
rs555288569 3252 dbSNP
rs1336591162 3253 dbSNP
rs1305102173 3256 dbSNP
rs1384222052 3257 dbSNP
rs1344656304 3269 dbSNP
rs1008772557 3271 dbSNP
rs1158954345 3272 dbSNP
rs572295977 3275 dbSNP
rs769971949 3276 dbSNP
rs1052670401 3281 dbSNP
rs775914636 3283 dbSNP
rs900410548 3286 dbSNP
rs996887500 3291 dbSNP
rs913751998 3293 dbSNP
rs1408007279 3295 dbSNP
rs1372764915 3306 dbSNP
rs1224532536 3308 dbSNP
rs1286284488 3323 dbSNP
rs1309423831 3323 dbSNP
rs1320268932 3323 dbSNP
rs749519448 3327 dbSNP
rs946585943 3331 dbSNP
rs139490868 3349 dbSNP
rs1276319831 3353 dbSNP
rs1401925892 3358 dbSNP
rs1361323832 3362 dbSNP
rs752079644 3367 dbSNP
rs144187786 3373 dbSNP
rs1462580591 3383 dbSNP
rs1456624567 3387 dbSNP
rs1347867970 3394 dbSNP
rs1166688443 3403 dbSNP
rs1196736590 3406 dbSNP
rs1231811866 3410 dbSNP
rs1470203776 3414 dbSNP
rs1178518139 3416 dbSNP
rs1005610627 3422 dbSNP
rs1015777616 3423 dbSNP
rs753870218 3429 dbSNP
rs1263334089 3444 dbSNP
rs1479637784 3456 dbSNP
rs1487321230 3456 dbSNP
rs1176122115 3459 dbSNP
rs578045217 3461 dbSNP
rs3204466 3462 dbSNP
rs1256706531 3472 dbSNP
rs1317772372 3472 dbSNP
rs1407358617 3472 dbSNP
rs1341185855 3477 dbSNP
rs1471233684 3497 dbSNP
rs1327508673 3508 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgguuccCUUACCGUCCCUUUa 5'
                 ||| || :||||:| 
Target 5' -------GAAAGG-GGGGAGAu 3'
1 - 14
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000336314.4 | 3UTR | GAAAGGGGGGAGAUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000336314.4 | 3UTR | GAAAGGGGGGAGAUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
223 hsa-miR-4446-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT078060 PCTP phosphatidylcholine transfer protein 2 2
MIRT099072 FOXC1 forkhead box C1 2 2
MIRT130186 TXNIP thioredoxin interacting protein 2 2
MIRT148786 NARS asparaginyl-tRNA synthetase 2 2
MIRT261965 SEPHS1 selenophosphate synthetase 1 2 2
MIRT345867 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT409087 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT451883 SOD2 superoxide dismutase 2 2 4
MIRT469236 RHOB ras homolog family member B 2 2
MIRT469435 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT483055 FOXB1 forkhead box B1 2 8
MIRT484640 TBC1D5 TBC1 domain family member 5 2 6
MIRT493106 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT497307 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 2 2
MIRT497798 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT501273 SCARB2 scavenger receptor class B member 2 2 4
MIRT506756 KMT2D lysine methyltransferase 2D 2 2
MIRT511986 EEF2 eukaryotic translation elongation factor 2 2 4
MIRT513126 ZNF431 zinc finger protein 431 2 2
MIRT519733 ZNF394 zinc finger protein 394 2 4
MIRT520351 UBE2K ubiquitin conjugating enzyme E2 K 2 4
MIRT520542 TPPP tubulin polymerization promoting protein 2 8
MIRT530782 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 2
MIRT531112 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT532144 GALNT8 polypeptide N-acetylgalactosaminyltransferase 8 2 2
MIRT533208 WAPAL WAPL cohesin release factor 2 2
MIRT533419 TWF1 twinfilin actin binding protein 1 2 2
MIRT534063 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT534288 SLAIN2 SLAIN motif family member 2 2 2
MIRT537796 EFNB2 ephrin B2 2 2
MIRT538017 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT538058 DMD dystrophin 2 2
MIRT538132 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT538680 CCDC80 coiled-coil domain containing 80 2 2
MIRT538788 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT542762 PPAP2B phospholipid phosphatase 3 2 2
MIRT546861 RAB10 RAB10, member RAS oncogene family 2 4
MIRT547418 MED4 mediator complex subunit 4 2 4
MIRT551633 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT552329 ZNF704 zinc finger protein 704 2 2
MIRT556124 MFSD9 major facilitator superfamily domain containing 9 2 4
MIRT559290 ATXN1 ataxin 1 2 2
MIRT562125 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563777 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 2 2
MIRT564430 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT566102 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT567126 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 2
MIRT571213 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT571939 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT571967 KIF21A kinesin family member 21A 2 2
MIRT606792 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 8
MIRT607351 TNS1 tensin 1 2 4
MIRT609416 GJB7 gap junction protein beta 7 2 4
MIRT609522 AZI2 5-azacytidine induced 2 2 4
MIRT611218 FAM174B family with sequence similarity 174 member B 2 2
MIRT611385 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT612053 KLB klotho beta 2 4
MIRT612102 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT612146 SIX1 SIX homeobox 1 2 4
MIRT612488 SIX3 SIX homeobox 3 2 4
MIRT613685 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613763 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT613876 FGD1 FYVE, RhoGEF and PH domain containing 1 2 2
MIRT613965 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 4
MIRT614894 PAPOLG poly(A) polymerase gamma 2 2
MIRT614912 NFIA nuclear factor I A 2 2
MIRT615013 ERGIC2 ERGIC and golgi 2 2 2
MIRT615106 BCL7A BCL tumor suppressor 7A 2 2
MIRT615242 FAM227A family with sequence similarity 227 member A 2 4
MIRT615695 NEGR1 neuronal growth regulator 1 2 2
MIRT615956 ERBB3 erb-b2 receptor tyrosine kinase 3 2 4
MIRT615979 FSTL4 follistatin like 4 2 2
MIRT616053 PTPRE protein tyrosine phosphatase, receptor type E 2 4
MIRT616073 TBX2 T-box 2 2 4
MIRT616234 NPAS3 neuronal PAS domain protein 3 2 2
MIRT616306 CELF2 CUGBP Elav-like family member 2 2 2
MIRT616474 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT616662 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT616887 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 2 2
MIRT616902 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT617025 SYT6 synaptotagmin 6 2 2
MIRT617162 SLC16A5 solute carrier family 16 member 5 2 2
MIRT617318 DPF3 double PHD fingers 3 2 2
MIRT617792 CHRM2 cholinergic receptor muscarinic 2 2 2
MIRT618418 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 2 2
MIRT618663 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT620212 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620413 TFDP3 transcription factor Dp family member 3 2 2
MIRT620667 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620709 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT620956 SFT2D2 SFT2 domain containing 2 2 2
MIRT621225 LMAN1 lectin, mannose binding 1 2 2
MIRT621333 SLC11A1 solute carrier family 11 member 1 2 2
MIRT621696 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT623484 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623777 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT624215 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT624675 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT627369 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT628252 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT630790 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT635631 PRR15L proline rich 15 like 2 2
MIRT636425 MARCH1 membrane associated ring-CH-type finger 1 2 2
MIRT637295 ACTN2 actinin alpha 2 2 2
MIRT637345 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT637842 SLC2A9 solute carrier family 2 member 9 2 2
MIRT638327 RCAN1 regulator of calcineurin 1 2 2
MIRT638375 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638751 EPHA4 EPH receptor A4 2 2
MIRT638965 ARHGAP6 Rho GTPase activating protein 6 2 2
MIRT639094 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT639172 CEP70 centrosomal protein 70 2 2
MIRT639254 SLC38A1 solute carrier family 38 member 1 2 4
MIRT639368 ZCCHC24 zinc finger CCHC-type containing 24 2 4
MIRT639504 CACNA1G calcium voltage-gated channel subunit alpha1 G 2 2
MIRT639644 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT640486 EXOC5 exocyst complex component 5 2 2
MIRT641424 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT641550 LIPG lipase G, endothelial type 2 2
MIRT642180 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT642656 RGS6 regulator of G protein signaling 6 2 2
MIRT642873 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT643355 TRIM10 tripartite motif containing 10 2 2
MIRT643531 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT643998 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644105 PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 2 2
MIRT644421 VDR vitamin D receptor 2 2
MIRT644481 SLFN12 schlafen family member 12 2 2
MIRT644573 SPOP speckle type BTB/POZ protein 2 2
MIRT645354 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT645383 FBLIM1 filamin binding LIM protein 1 2 2
MIRT645758 SURF6 surfeit 6 2 2
MIRT646060 VANGL2 VANGL planar cell polarity protein 2 2 2
MIRT646194 DUSP10 dual specificity phosphatase 10 2 2
MIRT647915 RGS5 regulator of G protein signaling 5 2 2
MIRT649216 AMMECR1L AMMECR1 like 2 2
MIRT649265 C17orf64 chromosome 17 open reading frame 64 2 2
MIRT649522 GTF3C3 general transcription factor IIIC subunit 3 2 2
MIRT649605 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650392 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT650835 SEMA4G semaphorin 4G 2 2
MIRT651273 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT651674 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT651763 VASP vasodilator stimulated phosphoprotein 2 2
MIRT652250 TPD52L3 tumor protein D52 like 3 2 2
MIRT652277 TOM1L2 target of myb1 like 2 membrane trafficking protein 2 2
MIRT652316 TNFSF15 TNF superfamily member 15 2 2
MIRT652342 TMOD3 tropomodulin 3 2 2
MIRT652373 TMEM57 transmembrane protein 57 2 2
MIRT652438 TMEM236 transmembrane protein 236 2 2
MIRT652723 TGFB2 transforming growth factor beta 2 2 2
MIRT652752 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653310 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT653327 SMIM18 small integral membrane protein 18 2 2
MIRT653406 SLC7A2 solute carrier family 7 member 2 2 2
MIRT653512 SLC41A1 solute carrier family 41 member 1 2 2
MIRT653912 SERPINC1 serpin family C member 1 2 2
MIRT654111 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654153 RORB RAR related orphan receptor B 2 2
MIRT654548 RAB14 RAB14, member RAS oncogene family 2 2
MIRT654920 POLR3D RNA polymerase III subunit D 2 2
MIRT655169 PHF19 PHD finger protein 19 2 2
MIRT655412 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT655784 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT655836 NGDN neuroguidin 2 2
MIRT656079 MTA3 metastasis associated 1 family member 3 2 2
MIRT656404 MCTP1 multiple C2 and transmembrane domain containing 1 2 2
MIRT656720 LMLN leishmanolysin like peptidase 2 2
MIRT656774 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT656922 KIAA1462 junctional cadherin 5 associated 2 2
MIRT657004 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT657477 HCAR2 hydroxycarboxylic acid receptor 2 2 2
MIRT657539 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657911 GCC1 GRIP and coiled-coil domain containing 1 2 2
MIRT658478 EXOC8 exocyst complex component 8 2 2
MIRT658612 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT658823 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT658965 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT659706 CCDC93 coiled-coil domain containing 93 2 2
MIRT660034 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT660108 BTBD3 BTB domain containing 3 2 2
MIRT660697 AMOTL2 angiomotin like 2 2 2
MIRT660763 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660884 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT660956 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661217 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT661596 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661624 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662430 EID2 EP300 interacting inhibitor of differentiation 2 2 2
MIRT664816 NOX5 NADPH oxidase 5 2 2
MIRT665548 UCHL5 ubiquitin C-terminal hydrolase L5 2 2
MIRT665815 TMEM161B transmembrane protein 161B 2 2
MIRT666668 RBM23 RNA binding motif protein 23 2 2
MIRT667995 HCFC2 host cell factor C2 2 2
MIRT668064 GPR180 G protein-coupled receptor 180 2 2
MIRT669056 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT669637 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT699368 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699882 RUNX1 runt related transcription factor 1 2 2
MIRT703834 ETV3 ETS variant 3 2 2
MIRT708528 ZNF177 zinc finger protein 177 2 2
MIRT709696 DMWD DM1 locus, WD repeat containing 2 2
MIRT710381 PARD6G par-6 family cell polarity regulator gamma 2 2
MIRT710639 GLUL glutamate-ammonia ligase 2 2
MIRT711584 SETD1A SET domain containing 1A 2 2
MIRT713208 FAM13A family with sequence similarity 13 member A 2 2
MIRT714129 IL20RB interleukin 20 receptor subunit beta 2 2
MIRT714204 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT714733 CCNO cyclin O 2 2
MIRT714761 ZNF462 zinc finger protein 462 2 2
MIRT715624 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715755 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT716075 RNF150 ring finger protein 150 2 2
MIRT716179 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT717450 RWDD2A RWD domain containing 2A 2 2
MIRT717866 CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 2 2
MIRT720964 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT721564 SLC5A12 solute carrier family 5 member 12 2 2
MIRT722348 BAG2 BCL2 associated athanogene 2 2 2
MIRT723235 BTLA B and T lymphocyte associated 2 2
MIRT724018 LMBRD2 LMBR1 domain containing 2 2 2
MIRT724507 KLHL5 kelch like family member 5 2 2
MIRT725478 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4446 Aed Therapy sensitive High Epilepsy tissue
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-4446 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-4446 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-4446 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-4446-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4446-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4446-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4446-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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