pre-miRNA Information
pre-miRNA hsa-mir-190b   
Genomic Coordinates chr1: 154193665 - 154193743
Description Homo sapiens miR-190b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-190b
Sequence 11| UGAUAUGUUUGAUAUUGGGUU |31
Evidence Not_experimental
Experiments
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KCNMB4   
Synonyms -
Description potassium calcium-activated channel subfamily M regulatory beta subunit 4
Transcript NM_014505   
Expression
Putative miRNA Targets on KCNMB4
3'UTR of KCNMB4
(miRNA target sites are highlighted)
>KCNMB4|NM_014505|3'UTR
   1 AGGGGAAGGAGGCTTGTAGAAAGCAAAGTACAGAAGCTGTACTCATCGGCACGCGTCCACCTGCGGAACCTGTGTTTCCT
  81 GGCGCAGGAGATGGACAGGGCCACGACAGGGCTCTGAGAGGCTCATCCCTCAGTGGCAACAGAAACAGGCACAACTGGAA
 161 GACTTGGAACCTCAAAGCTTGTATTCCATCTGCTGTAGCAATGGCTAAAGGGTCAAGATCTTAGCTGTATGGAGTAACTA
 241 TTTCAGAAAACCCTATAAGAAGTTCATTTTCTTTCAAAAGTAACAGTATATTATTTGTACAGTGTAGTATACAAACCATT
 321 ATGATTTATGCTACTTAAAAATATTAAAATAGAGTGGTCTGTGTTATTTTCTATTTCCTTTTTTATGCTTAGAACACCAG
 401 GGTTTAAAAAAAAAAAAAAGGTGAGGACATCTGGGTCTCATTTGCTTCTGCTAGGTTAAACTTTTACTTGACAACAAGGA
 481 TTCCTGCTGAAGTCTGAACCTTACTGTGTAACCCTCAGTTTCCACTATTAAAGAGTATCTTTTGACGTCTGCTTGGAAAA
 561 TGAATAGTATACTGGTAACTCAGTCTCCAGTCACCTCTGTGTCTCTTAAGCAAGAGATTCTAAAAGATTGGGAAAACATA
 641 TCCTCCAACACCTGCCTTTGCCTAACCATTATTTTTCACCAGATTACTTCTTAAGAGAGGGAGGTGATTCTGAAGAAGGC
 721 TTCTATCTCAAAAAGCACTGGGCTTCCTTATTCATCTGTTCTTGTTGTTTTTGACGGAGTTAAAAAAGTTTGTGTGCAAT
 801 ACAATATACATGATGTGAAGGACACTCTTCAGCTTAGTGAAACGCTGTTTTCATTTTTTTTTTTTTTTGTAGGTCAGAAA
 881 AAAACAACAAAATCAGTTCAAGCATTTTTTTTTCTTTGTCCTTGCCTTGATGTTATGAGTATTAAAACCAGGAGGATTGC
 961 TGCCATTGTGCAGTTTGCTTAGACAAACCTGGAGATGCAACCCAGCTCACATCATTGCTACTGATGAGCTTTCTGTGCCT
1041 TTATCAAAAGTTGATTGAGAAGACCATATTTCTTTGTATCTTTTTATAAACTCAAATTCCAAGTATCAAATCGCAGGTCT
1121 CAGTGAACATCAAACCTATTTACTACATAGAATCAAACCTTTGTTTAGGTGAGATGTACATCGTTAGTGGAGGAAAAACT
1201 GACAACCTAATTTCATTTGTTTTCTTCTGATACTCTTCAGACATGCCTCTATTAGAATAAAGGTAAACTGGAATTTAAAG
1281 ACAAGTTCCCCTCAGTTATTTCCATGGAGCTGTAATATGTATATATGGAGTGATGGTTTCCTGACCTTTAGTCCACATAC
1361 CAATGTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTGAGATGGTGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGCACG
1441 ATCTCGGCTCACTACAGTCTCCACCTCCTGGGTTCAAGTCATTCCTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG
1521 CACGCACCACCACGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAA
1601 TCTCCTGACCTTGTGATCTGCCCACTTCACCTCCCAAAGTGCTGGGATTACAGGCCAATGTTTTCTTAATCTTAGAATGT
1681 GAATAACTGAAAATCATAGTCTGTGGAAAGGTGTTGAATTGAGTATAATCTTCTTCTGTTTATTTTTGTGTTTTGTTTTT
1761 TAACAGATGGGTATCTTGCTATGTTGCCCAGGATGGAGTGCAGTAGCTATTCACAGGTATGATCATAGCACACTGCAGCC
1841 TCAAGCTCCTGGGCTCAAGCGATCCCCCTCCCTCAGCCTCCCAAGTATCTGGGGTTACTGGTGTGCACCACCGTGCTTGG
1921 CTCCAATAATTTTTTTTCTAATTCAAAAGTTACAGTTTCACTGTGAAAAAGGCCTTGAACACACTATTTATGACATCTTT
2001 TGAGGCAGCTCCAGTGCCTTGACTTCAATCCCAGTTTCCGGTTGCAGCATCCTTGTTGTCTTAGCAACACAGTGAACTAT
2081 TCTGAAGCATAGAGTAACACGAAACTGGGAGTCCGAGAAATAATCATCTCTGCATCACATTATGGGAGACGAAGTCTGCT
2161 TTATCCATTTTATCTTTATTCAGTTGTCTATGATTAATTGATTACAGAGTAGTAGATTAGAATAGTGCATGGATATACAT
2241 TTGTGTTGAAAAAAGGGGAAGTTGATATATATCAATCTTAGTTTTCATTTATCAGTTTGATATTCATGCATTTACACTAA
2321 ACGCTTCCATTTATCCCGAAAAAGTATATGCAACTGTATTCTGTAGGTTGATTTTTGGAAAAGGGGAGAAGCACACTGAA
2401 TTCATAAGGTCACATGTAGTCTTAAGGTCTTACTTGCTTACAGCCAATTAAATTTGAAGCACCTTATTTATACTTGTTAA
2481 AGGTAAAACCCAAAAGAACAAGCAGAGGACATTTTAAGGTCATAAAAGGTAAATAAGCTTACCTTCTTAATGTTTTCATT
2561 CTCTTTTTGTATAAATCAGAAAATGATCTAAACTGCTGTAACAAAGAGACCCCAAAATATGATGGCTCATGTAAGATAAT
2641 TTATTTTTTTCTCACATAGCAATCCAGAAGTGGCTTCATTTCACAAGGTATTCAAGGGATATAGGAGTCATCTACCTTGT
2721 TAGTTCTCTTAATACCCAAGGGTATTGTTCTTTCCATGGTCAAAGCTGGCTCAAGACTTCCTAGCCTGTGAAAAAAGAAG
2801 AAGGTGGAGCAAGCCATTTCCTTTTTAGGAAATTACAGCCATCACTTCTGCCCACCGTCCATTCATGAATACTTACTATA
2881 TAGCTATACCTAGCTTCAAGAAAGCCTGGGACGTGTCTCTAACTAGATGGACATGTGCCCTACTAAAACTCCAGGGAAAG
2961 GGTTCTATTACTAAAGCTAAAAAGAGGGGAATGAATACTAGAGTTAAAGACAAAAATGATAGCAGCCAATGGCCCATGCC
3041 GTGATAATCTGCTGAGCAGGCATGATGGAGATCCCTTGCCCAGCAGAAAGTGTTCCTTGGTGAAATCATGAATCTGCTAT
3121 CTAGGAGAAACTCCCTTGTCCATTGTCTTCTGTGGCCACTAGTTTGACCTCTAGGAAAGTCTTGCTCGTCAGCTTCTGTG
3201 GCCCCGTCTGAAACTTTTGAGGGACATCGCAGCTTTTGCAGCCCCTGCTTGCTGGTGCAGACTTTTAGACCTAGATTGCC
3281 TTAGAGACTGAAAAATATACGCTTTTATAGGCCGGGGTTTTAGTTCATTTGACTGTAATAAAGACGTCAATGCCGTTTTT
3361 AATGTTTGACTGCTGACATCTTTCAAGACTCACCTTTCCCTTCTCCCTTATGCTGCACATCTGGGCAAGCTGATGGAAGC
3441 ATGGGTGCCTCCTCCTTTGGCCCCAGCAGGAAGTTCAAATCACGCAAGCCCTGGCATGCATGCAGGAAGCTTCACCCCAG
3521 CCTCACACTCTAAGACGGATAAAAGCCAAACCAATTAAGCCGTTTCTCGACCCTCCTGGGAGCCTGCCCTATCTCCCTGG
3601 AAAGTCTCAGTATGTGAGTAATAAACCTTTTTATACCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uugggUUAUAG----UUUGUAUAGu 5'
               || ||:    ||||||||| 
Target 5' tctaaAAGATTGGGAAAACATATCc 3'
619 - 643 154.00 -7.30
2
miRNA  3' uugggUUAUAGUUUGUAUAGu 5'
               ||  | | |:||||| 
Target 5' aggggAAGTTGATATATATCa 3'
2254 - 2274 132.00 -5.50
3
miRNA  3' uuGGGUUA----UAGUUUGUAUAGu 5'
            |:||:|    ||||||| |||: 
Target 5' gtCTCAGTGAACATCAAACCTATTt 3'
1117 - 1141 125.00 -10.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30106603 14 COSMIC
COSN31507384 20 COSMIC
COSN31501670 45 COSMIC
COSN30150757 48 COSMIC
COSN30518692 48 COSMIC
COSN13416050 49 COSMIC
COSN30507978 50 COSMIC
COSN30498193 55 COSMIC
COSN30171993 63 COSMIC
COSN30489369 79 COSMIC
COSN31543498 84 COSMIC
COSN30518764 95 COSMIC
COSN30539512 99 COSMIC
COSN5718739 102 COSMIC
COSN13416051 105 COSMIC
COSN30174278 117 COSMIC
COSN30126838 120 COSMIC
COSN31489883 132 COSMIC
COSN31588110 184 COSMIC
COSN31568024 372 COSMIC
COSN27206656 420 COSMIC
COSN18723783 810 COSMIC
COSN27267547 869 COSMIC
COSN16385380 994 COSMIC
COSN32088344 1027 COSMIC
COSN23185461 1326 COSMIC
COSN32064496 1378 COSMIC
COSN22983210 1402 COSMIC
COSN21657698 2276 COSMIC
COSN7379190 2323 COSMIC
COSN15838598 2415 COSMIC
COSN25794959 3182 COSMIC
COSN5951395 3200 COSMIC
COSN19490893 3229 COSMIC
COSN6409234 3337 COSMIC
COSN22824834 3532 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1002469382 5 dbSNP
rs866509936 6 dbSNP
rs1444474797 10 dbSNP
rs1054941964 11 dbSNP
rs779511764 12 dbSNP
rs747205444 13 dbSNP
rs755144100 14 dbSNP
rs746256743 15 dbSNP
rs781280691 15 dbSNP
rs928963168 18 dbSNP
rs748158214 19 dbSNP
rs770214880 26 dbSNP
rs1450092698 29 dbSNP
rs1301088847 31 dbSNP
rs1381753300 32 dbSNP
rs552178808 33 dbSNP
rs749656064 43 dbSNP
rs771305151 45 dbSNP
rs909101248 46 dbSNP
rs774808257 47 dbSNP
rs760439951 48 dbSNP
rs1212838621 49 dbSNP
rs966385998 51 dbSNP
rs1426270996 54 dbSNP
rs1212509256 56 dbSNP
rs17108148 61 dbSNP
rs1258913738 64 dbSNP
rs1202691908 65 dbSNP
rs1018675625 66 dbSNP
rs1469422114 73 dbSNP
rs1255461887 79 dbSNP
rs964470857 84 dbSNP
rs765821544 85 dbSNP
rs901662558 105 dbSNP
rs763374987 106 dbSNP
rs1222887055 109 dbSNP
rs998698926 112 dbSNP
rs1339586839 114 dbSNP
rs1293890480 116 dbSNP
rs1051162026 120 dbSNP
rs1399485410 122 dbSNP
rs1387786356 124 dbSNP
rs1168823009 129 dbSNP
rs953079826 130 dbSNP
rs984412288 134 dbSNP
rs1401951066 145 dbSNP
rs1168090072 154 dbSNP
rs1465487937 157 dbSNP
rs1419001774 158 dbSNP
rs892473532 173 dbSNP
rs908787303 174 dbSNP
rs368825274 180 dbSNP
rs940032471 181 dbSNP
rs189681190 182 dbSNP
rs371330300 196 dbSNP
rs766166268 200 dbSNP
rs1046412669 201 dbSNP
rs1009537115 202 dbSNP
rs1459261176 205 dbSNP
rs1256473150 213 dbSNP
rs1198231547 221 dbSNP
rs1317118396 235 dbSNP
rs1273546728 246 dbSNP
rs928056894 250 dbSNP
rs1022556784 253 dbSNP
rs1311404370 254 dbSNP
rs1462737131 254 dbSNP
rs1391535562 256 dbSNP
rs8498 266 dbSNP
rs1378457895 267 dbSNP
rs1164488944 268 dbSNP
rs968328347 270 dbSNP
rs1002448293 278 dbSNP
rs549762714 283 dbSNP
rs1395718930 285 dbSNP
rs1165318079 289 dbSNP
rs374822822 296 dbSNP
rs1392309110 312 dbSNP
rs1456855108 317 dbSNP
rs879864180 318 dbSNP
rs938080219 322 dbSNP
rs1441684630 323 dbSNP
rs1326456164 337 dbSNP
rs1055373030 338 dbSNP
rs568122292 343 dbSNP
rs534163160 355 dbSNP
rs1010690459 356 dbSNP
rs992336697 357 dbSNP
rs1354169493 360 dbSNP
rs1264855823 368 dbSNP
rs1240759512 380 dbSNP
rs1042317380 386 dbSNP
rs1445615330 403 dbSNP
rs902422937 403 dbSNP
rs1008538242 406 dbSNP
rs1290016691 406 dbSNP
rs1371209139 406 dbSNP
rs1390445941 406 dbSNP
rs758534772 406 dbSNP
rs918984936 407 dbSNP
rs1378578557 422 dbSNP
rs939119813 423 dbSNP
rs1158072565 428 dbSNP
rs1454878852 435 dbSNP
rs1379519272 444 dbSNP
rs950445282 450 dbSNP
rs1449705741 462 dbSNP
rs1266373620 466 dbSNP
rs1217287408 477 dbSNP
rs1270898281 480 dbSNP
rs1336232043 487 dbSNP
rs1213800193 494 dbSNP
rs900258228 495 dbSNP
rs1266511930 500 dbSNP
rs1345108393 511 dbSNP
rs1485853578 512 dbSNP
rs77554622 517 dbSNP
rs908881269 519 dbSNP
rs759502142 523 dbSNP
rs867684615 528 dbSNP
rs943325004 529 dbSNP
rs1359122711 531 dbSNP
rs1297661630 537 dbSNP
rs984275036 540 dbSNP
rs974611781 544 dbSNP
rs923114137 547 dbSNP
rs553901878 548 dbSNP
rs1416002486 561 dbSNP
rs1051623322 564 dbSNP
rs1215789637 569 dbSNP
rs59784668 569 dbSNP
rs1442541951 574 dbSNP
rs945439673 576 dbSNP
rs915301647 580 dbSNP
rs1043781696 590 dbSNP
rs946578243 594 dbSNP
rs1220773516 597 dbSNP
rs1042182621 608 dbSNP
rs902453919 618 dbSNP
rs1290563979 625 dbSNP
rs903843807 631 dbSNP
rs1002481090 637 dbSNP
rs561736629 638 dbSNP
rs1414137532 643 dbSNP
rs396096 648 dbSNP
rs936580341 651 dbSNP
rs1467045771 655 dbSNP
rs1421175338 659 dbSNP
rs1192902491 661 dbSNP
rs1473060162 662 dbSNP
rs1233336837 667 dbSNP
rs1238721138 679 dbSNP
rs574003863 695 dbSNP
rs1013722640 702 dbSNP
rs1258378990 720 dbSNP
rs1316488387 724 dbSNP
rs1257781791 732 dbSNP
rs1026488110 738 dbSNP
rs1229417478 744 dbSNP
rs1359011152 752 dbSNP
rs752808991 753 dbSNP
rs984499382 758 dbSNP
rs1447482129 762 dbSNP
rs887504746 765 dbSNP
rs1015904961 774 dbSNP
rs140065118 775 dbSNP
rs1397881260 776 dbSNP
rs576974097 776 dbSNP
rs2853 777 dbSNP
rs777658312 779 dbSNP
rs1415790628 782 dbSNP
rs1161385637 783 dbSNP
rs556723744 786 dbSNP
rs959432285 795 dbSNP
rs991212431 800 dbSNP
rs913048338 805 dbSNP
rs1237969429 809 dbSNP
rs2852 810 dbSNP
rs1288423360 812 dbSNP
rs765534870 816 dbSNP
rs1043815514 817 dbSNP
rs1385746606 821 dbSNP
rs1161138012 828 dbSNP
rs1311501265 833 dbSNP
rs1238271445 834 dbSNP
rs903874903 844 dbSNP
rs1433829512 845 dbSNP
rs1437013677 846 dbSNP
rs1348167274 854 dbSNP
rs199834057 854 dbSNP
rs373048901 854 dbSNP
rs397968247 854 dbSNP
rs1310893382 855 dbSNP
rs1159873625 856 dbSNP
rs1406883077 869 dbSNP
rs1437439146 869 dbSNP
rs76088734 870 dbSNP
rs923737365 871 dbSNP
rs1415086814 872 dbSNP
rs1297267964 873 dbSNP
rs1370479333 874 dbSNP
rs1225000649 876 dbSNP
rs1288263934 878 dbSNP
rs1488873259 878 dbSNP
rs1214458775 881 dbSNP
rs944541414 883 dbSNP
rs1355112028 886 dbSNP
rs542530966 889 dbSNP
rs1234009176 899 dbSNP
rs1040326188 905 dbSNP
rs1369503323 905 dbSNP
rs1041997414 915 dbSNP
rs1486862223 919 dbSNP
rs1211013863 921 dbSNP
rs1232540758 922 dbSNP
rs1361018405 924 dbSNP
rs1479673502 925 dbSNP
rs900405625 927 dbSNP
rs1179062253 929 dbSNP
rs1344071759 931 dbSNP
rs149780948 937 dbSNP
rs1055794093 938 dbSNP
rs1049181605 939 dbSNP
rs527973278 940 dbSNP
rs1478435566 943 dbSNP
rs1266056561 952 dbSNP
rs1014253820 953 dbSNP
rs1215068231 968 dbSNP
rs1026519005 972 dbSNP
rs886597561 973 dbSNP
rs770876643 975 dbSNP
rs1212540703 977 dbSNP
rs186782801 980 dbSNP
rs190306436 981 dbSNP
rs182869311 982 dbSNP
rs1340885817 983 dbSNP
rs1280075374 1002 dbSNP
rs1015935618 1003 dbSNP
rs186420785 1007 dbSNP
rs1035305773 1015 dbSNP
rs1440731017 1019 dbSNP
rs1301895293 1025 dbSNP
rs974395610 1035 dbSNP
rs1030407022 1036 dbSNP
rs1220204719 1039 dbSNP
rs954682283 1051 dbSNP
rs989120273 1054 dbSNP
rs115279597 1055 dbSNP
rs968108729 1057 dbSNP
rs1306032905 1060 dbSNP
rs1192175690 1063 dbSNP
rs978186717 1064 dbSNP
rs1238939661 1065 dbSNP
rs924020817 1067 dbSNP
rs1482315555 1072 dbSNP
rs190827510 1087 dbSNP
rs1199485003 1094 dbSNP
rs976303104 1104 dbSNP
rs1259709974 1112 dbSNP
rs778710742 1113 dbSNP
rs931862398 1114 dbSNP
rs1185765364 1118 dbSNP
rs1397334070 1120 dbSNP
rs572839686 1121 dbSNP
rs1411376211 1130 dbSNP
rs908838246 1131 dbSNP
rs1402945718 1137 dbSNP
rs940334720 1141 dbSNP
rs937999678 1144 dbSNP
rs1036145572 1161 dbSNP
rs1167512587 1164 dbSNP
rs1170957216 1170 dbSNP
rs1055172738 1171 dbSNP
rs745655202 1179 dbSNP
rs1324417813 1180 dbSNP
rs1333369084 1181 dbSNP
rs565878136 1183 dbSNP
rs1266021144 1185 dbSNP
rs949692970 1191 dbSNP
rs1319445275 1199 dbSNP
rs1048419790 1204 dbSNP
rs1270040522 1205 dbSNP
rs1328868793 1207 dbSNP
rs1378571692 1207 dbSNP
rs886620517 1214 dbSNP
rs1006308914 1220 dbSNP
rs1295845984 1223 dbSNP
rs370222788 1225 dbSNP
rs1384714891 1244 dbSNP
rs1159263903 1250 dbSNP
rs1216478943 1262 dbSNP
rs1181340921 1274 dbSNP
rs900299081 1274 dbSNP
rs1418333551 1290 dbSNP
rs1267747956 1292 dbSNP
rs1012875940 1296 dbSNP
rs996321168 1305 dbSNP
rs1258962320 1308 dbSNP
rs539346367 1311 dbSNP
rs1216788917 1316 dbSNP
rs771750668 1317 dbSNP
rs17108166 1322 dbSNP
rs1274949853 1326 dbSNP
rs954507741 1331 dbSNP
rs1010173255 1338 dbSNP
rs1452167392 1339 dbSNP
rs968056752 1341 dbSNP
rs1385609912 1347 dbSNP
rs1365424909 1359 dbSNP
rs1299336001 1363 dbSNP
rs570474372 1364 dbSNP
rs1240079742 1366 dbSNP
rs375323936 1371 dbSNP
rs1476279974 1372 dbSNP
rs1020185922 1373 dbSNP
rs1193868515 1375 dbSNP
rs968548317 1376 dbSNP
rs978552312 1377 dbSNP
rs1204213139 1378 dbSNP
rs1258134363 1378 dbSNP
rs1281478221 1378 dbSNP
rs1345219797 1378 dbSNP
rs1489009876 1378 dbSNP
rs369964562 1378 dbSNP
rs376288820 1378 dbSNP
rs1416753679 1379 dbSNP
rs1031069331 1381 dbSNP
rs148496184 1382 dbSNP
rs975953766 1382 dbSNP
rs200063058 1383 dbSNP
rs112721027 1384 dbSNP
rs1415268713 1384 dbSNP
rs991300661 1385 dbSNP
rs1171023375 1391 dbSNP
rs1318252146 1396 dbSNP
rs1311560059 1397 dbSNP
rs1402279093 1398 dbSNP
rs1428302509 1401 dbSNP
rs1279042985 1402 dbSNP
rs953322774 1403 dbSNP
rs1478736006 1405 dbSNP
rs1239878825 1407 dbSNP
rs1191769820 1409 dbSNP
rs985150384 1410 dbSNP
rs909119616 1423 dbSNP
rs1231515182 1433 dbSNP
rs1259061636 1436 dbSNP
rs556352052 1440 dbSNP
rs574852505 1441 dbSNP
rs1047981737 1446 dbSNP
rs1448924036 1447 dbSNP
rs1342321840 1448 dbSNP
rs940365292 1455 dbSNP
rs182678800 1460 dbSNP
rs1282095727 1462 dbSNP
rs554333635 1463 dbSNP
rs1405114966 1465 dbSNP
rs1331726584 1468 dbSNP
rs942284425 1469 dbSNP
rs1037868152 1473 dbSNP
rs1417370999 1474 dbSNP
rs900664432 1479 dbSNP
rs1217115833 1481 dbSNP
rs750623135 1484 dbSNP
rs1181400868 1488 dbSNP
rs1421154332 1489 dbSNP
rs1484516771 1490 dbSNP
rs928383536 1493 dbSNP
rs1200839141 1501 dbSNP
rs187758472 1502 dbSNP
rs1272985844 1503 dbSNP
rs1051928937 1517 dbSNP
rs546472503 1524 dbSNP
rs1358604032 1525 dbSNP
rs1312955255 1529 dbSNP
rs1245540779 1533 dbSNP
rs112304184 1534 dbSNP
rs1010283617 1535 dbSNP
rs1020216558 1540 dbSNP
rs1352519392 1544 dbSNP
rs543927574 1544 dbSNP
rs1405838333 1545 dbSNP
rs1469193385 1548 dbSNP
rs895344546 1554 dbSNP
rs200194457 1559 dbSNP
rs968664285 1561 dbSNP
rs140856952 1564 dbSNP
rs1380591048 1567 dbSNP
rs142980232 1568 dbSNP
rs1421885439 1569 dbSNP
rs1034215246 1571 dbSNP
rs1222979437 1572 dbSNP
rs1453778142 1577 dbSNP
rs1289694968 1579 dbSNP
rs531304716 1580 dbSNP
rs1354483391 1587 dbSNP
rs958768434 1592 dbSNP
rs1222244035 1610 dbSNP
rs1370944668 1611 dbSNP
rs990931756 1614 dbSNP
rs543385963 1622 dbSNP
rs1336420111 1623 dbSNP
rs1301212003 1625 dbSNP
rs1423507060 1626 dbSNP
rs1341094606 1631 dbSNP
rs544975430 1638 dbSNP
rs901934219 1645 dbSNP
rs1277666625 1647 dbSNP
rs1025444449 1654 dbSNP
rs1192074337 1656 dbSNP
rs970753414 1658 dbSNP
rs1240581401 1659 dbSNP
rs1279426233 1660 dbSNP
rs1267457670 1661 dbSNP
rs983453853 1667 dbSNP
rs907872537 1672 dbSNP
rs953366078 1676 dbSNP
rs942315549 1685 dbSNP
rs1316496416 1698 dbSNP
rs1256447850 1712 dbSNP
rs1283298663 1720 dbSNP
rs561667959 1723 dbSNP
rs1179114426 1724 dbSNP
rs1219657026 1728 dbSNP
rs1347137500 1729 dbSNP
rs922121248 1732 dbSNP
rs565016565 1736 dbSNP
rs1016211474 1737 dbSNP
rs932114401 1746 dbSNP
rs1051531895 1751 dbSNP
rs1290059322 1751 dbSNP
rs768319266 1761 dbSNP
rs1428223963 1763 dbSNP
rs1159793576 1772 dbSNP
rs1176322985 1782 dbSNP
rs192729425 1792 dbSNP
rs1427597644 1798 dbSNP
rs147736586 1799 dbSNP
rs938360598 1801 dbSNP
rs1263960651 1808 dbSNP
rs780466330 1810 dbSNP
rs1041439798 1820 dbSNP
rs1238326053 1825 dbSNP
rs991681641 1829 dbSNP
rs915651088 1830 dbSNP
rs1260969181 1835 dbSNP
rs1222836760 1837 dbSNP
rs776309540 1853 dbSNP
rs1043851756 1854 dbSNP
rs1000139521 1861 dbSNP
rs572171603 1862 dbSNP
rs894315672 1868 dbSNP
rs541227220 1869 dbSNP
rs767000375 1875 dbSNP
rs1454214525 1881 dbSNP
rs751953014 1886 dbSNP
rs1368452589 1889 dbSNP
rs183078078 1891 dbSNP
rs1014901187 1908 dbSNP
rs1256203143 1911 dbSNP
rs901880426 1913 dbSNP
rs369835081 1914 dbSNP
rs570530969 1920 dbSNP
rs1274418407 1927 dbSNP
rs537875027 1928 dbSNP
rs922144664 1941 dbSNP
rs1185679499 1945 dbSNP
rs1241042783 1945 dbSNP
rs1202869055 1946 dbSNP
rs550131604 1947 dbSNP
rs1253053286 1952 dbSNP
rs1179763374 1960 dbSNP
rs988084493 1967 dbSNP
rs912058506 1973 dbSNP
rs1306449615 1974 dbSNP
rs1312752928 1983 dbSNP
rs1252959143 1984 dbSNP
rs1452929993 1985 dbSNP
rs142559826 1987 dbSNP
rs187170696 1991 dbSNP
rs1016072345 1999 dbSNP
rs961960498 2009 dbSNP
rs1041470792 2015 dbSNP
rs1461729745 2023 dbSNP
rs1165475160 2027 dbSNP
rs754362983 2028 dbSNP
rs1384906993 2040 dbSNP
rs1179467787 2041 dbSNP
rs935617362 2046 dbSNP
rs972016499 2053 dbSNP
rs1035607094 2055 dbSNP
rs1166374875 2057 dbSNP
rs1402478857 2063 dbSNP
rs1055721408 2065 dbSNP
rs960004157 2072 dbSNP
rs775145925 2075 dbSNP
rs866853294 2075 dbSNP
rs1291878837 2080 dbSNP
rs1356626807 2085 dbSNP
rs894419413 2102 dbSNP
rs1240383534 2112 dbSNP
rs1337923338 2115 dbSNP
rs144804233 2116 dbSNP
rs1024587930 2118 dbSNP
rs572631488 2125 dbSNP
rs1388284654 2126 dbSNP
rs569266020 2131 dbSNP
rs1014932387 2134 dbSNP
rs1364999175 2142 dbSNP
rs192321164 2143 dbSNP
rs117232819 2151 dbSNP
rs1028992725 2152 dbSNP
rs543092315 2156 dbSNP
rs1418281100 2158 dbSNP
rs1279726676 2168 dbSNP
rs1201474212 2173 dbSNP
rs953793593 2182 dbSNP
rs925414571 2184 dbSNP
rs561724175 2185 dbSNP
rs987730385 2189 dbSNP
rs1212570509 2192 dbSNP
rs1418558406 2203 dbSNP
rs1258577272 2206 dbSNP
rs1238854730 2215 dbSNP
rs1324686850 2220 dbSNP
rs764110148 2229 dbSNP
rs1285793496 2234 dbSNP
rs1403590150 2249 dbSNP
rs912072607 2250 dbSNP
rs1344996812 2253 dbSNP
rs746601119 2254 dbSNP
rs549776872 2262 dbSNP
rs1384141994 2263 dbSNP
rs1211994102 2265 dbSNP
rs573658957 2269 dbSNP
rs1452853535 2275 dbSNP
rs1429696594 2278 dbSNP
rs1178538191 2280 dbSNP
rs867449031 2287 dbSNP
rs73328308 2295 dbSNP
rs1191241266 2307 dbSNP
rs75807588 2309 dbSNP
rs1259288074 2318 dbSNP
rs1050424818 2320 dbSNP
rs184481855 2323 dbSNP
rs1006273177 2324 dbSNP
rs915564593 2329 dbSNP
rs1271283627 2330 dbSNP
rs551137274 2338 dbSNP
rs114690720 2339 dbSNP
rs35967822 2339 dbSNP
rs1317954217 2342 dbSNP
rs1252983260 2345 dbSNP
rs757119893 2347 dbSNP
rs1456965808 2348 dbSNP
rs1338381594 2351 dbSNP
rs1380350035 2351 dbSNP
rs1299621933 2355 dbSNP
rs959961556 2365 dbSNP
rs771681768 2367 dbSNP
rs1340801313 2368 dbSNP
rs1232134784 2405 dbSNP
rs1003968439 2407 dbSNP
rs377184911 2414 dbSNP
rs899295044 2422 dbSNP
rs1370797933 2434 dbSNP
rs189584620 2438 dbSNP
rs994873931 2439 dbSNP
rs1444808365 2447 dbSNP
rs370815721 2448 dbSNP
rs1245363231 2451 dbSNP
rs1322999658 2455 dbSNP
rs1029439407 2461 dbSNP
rs1461137826 2472 dbSNP
rs1274385191 2478 dbSNP
rs968440632 2503 dbSNP
rs563575826 2504 dbSNP
rs978520047 2513 dbSNP
rs1009583910 2516 dbSNP
rs1266568947 2518 dbSNP
rs1019166792 2519 dbSNP
rs924355985 2525 dbSNP
rs1485722202 2528 dbSNP
rs1313170366 2529 dbSNP
rs1450241212 2530 dbSNP
rs531642421 2535 dbSNP
rs1329489363 2539 dbSNP
rs777608502 2547 dbSNP
rs192438359 2562 dbSNP
rs988306404 2570 dbSNP
rs568394087 2578 dbSNP
rs535586558 2587 dbSNP
rs1181347444 2589 dbSNP
rs1444449824 2596 dbSNP
rs1233772515 2599 dbSNP
rs1184630111 2601 dbSNP
rs1411647724 2603 dbSNP
rs1436509993 2603 dbSNP
rs1223392689 2604 dbSNP
rs1361651557 2611 dbSNP
rs926100764 2629 dbSNP
rs1050861737 2630 dbSNP
rs1363199326 2632 dbSNP
rs1279856517 2647 dbSNP
rs1444302070 2654 dbSNP
rs942005429 2660 dbSNP
rs957135058 2661 dbSNP
rs1333980410 2672 dbSNP
rs1307325984 2675 dbSNP
rs373184836 2678 dbSNP
rs1366862323 2679 dbSNP
rs535196288 2680 dbSNP
rs1161318578 2685 dbSNP
rs746654910 2688 dbSNP
rs897894509 2696 dbSNP
rs1160719742 2699 dbSNP
rs1468911318 2702 dbSNP
rs1232858135 2706 dbSNP
rs1200741609 2716 dbSNP
rs1490869226 2719 dbSNP
rs1266797038 2724 dbSNP
rs1222037719 2725 dbSNP
rs1317677527 2727 dbSNP
rs1286610504 2734 dbSNP
rs147807622 2736 dbSNP
rs949717860 2741 dbSNP
rs1413710951 2743 dbSNP
rs865817579 2754 dbSNP
rs566156825 2755 dbSNP
rs1300681674 2760 dbSNP
rs1396137689 2775 dbSNP
rs779723204 2777 dbSNP
rs1391560402 2789 dbSNP
rs1012796121 2791 dbSNP
rs540073957 2792 dbSNP
rs551742220 2795 dbSNP
rs184420709 2797 dbSNP
rs1399359973 2801 dbSNP
rs1411634306 2803 dbSNP
rs1177812093 2821 dbSNP
rs1481669935 2827 dbSNP
rs939938409 2855 dbSNP
rs1038202260 2856 dbSNP
rs898321254 2857 dbSNP
rs746616259 2858 dbSNP
rs576856714 2861 dbSNP
rs1224063296 2863 dbSNP
rs1031405123 2866 dbSNP
rs955763803 2869 dbSNP
rs1030463018 2870 dbSNP
rs955044539 2871 dbSNP
rs986435127 2876 dbSNP
rs910796498 2879 dbSNP
rs768439688 2885 dbSNP
rs1235981025 2887 dbSNP
rs1471160198 2888 dbSNP
rs1175952072 2890 dbSNP
rs1404614797 2890 dbSNP
rs1429241094 2899 dbSNP
rs1421691788 2911 dbSNP
rs889131011 2913 dbSNP
rs1182571750 2914 dbSNP
rs1204125269 2916 dbSNP
rs146449972 2916 dbSNP
rs1261224187 2921 dbSNP
rs973378775 2933 dbSNP
rs1307590426 2934 dbSNP
rs770687280 2940 dbSNP
rs113457443 2966 dbSNP
rs1380614265 2972 dbSNP
rs1364093486 2974 dbSNP
rs1057366575 2980 dbSNP
rs1454963572 2986 dbSNP
rs776427812 2993 dbSNP
rs1302812202 2999 dbSNP
rs1226961400 3000 dbSNP
rs1462902031 3001 dbSNP
rs1356368854 3010 dbSNP
rs999094452 3011 dbSNP
rs1168332913 3020 dbSNP
rs1429183931 3023 dbSNP
rs1033200014 3030 dbSNP
rs1171315921 3033 dbSNP
rs948552765 3037 dbSNP
rs555080399 3041 dbSNP
rs759398115 3042 dbSNP
rs1480877230 3049 dbSNP
rs1044348327 3058 dbSNP
rs1202490478 3064 dbSNP
rs1340819038 3074 dbSNP
rs140188985 3077 dbSNP
rs1022678068 3081 dbSNP
rs1247670430 3092 dbSNP
rs971474374 3095 dbSNP
rs1312382880 3096 dbSNP
rs189283927 3097 dbSNP
rs981170266 3117 dbSNP
rs571410601 3118 dbSNP
rs1297170050 3120 dbSNP
rs559048075 3121 dbSNP
rs908210789 3124 dbSNP
rs939971020 3131 dbSNP
rs1296932408 3133 dbSNP
rs1370546451 3144 dbSNP
rs973945102 3148 dbSNP
rs1366229115 3151 dbSNP
rs577301633 3156 dbSNP
rs1445141932 3159 dbSNP
rs1422909289 3160 dbSNP
rs1366496337 3161 dbSNP
rs1031267722 3185 dbSNP
rs1378063619 3188 dbSNP
rs544841600 3189 dbSNP
rs1179889150 3198 dbSNP
rs1482462786 3200 dbSNP
rs1268921351 3202 dbSNP
rs1276748106 3202 dbSNP
rs932475857 3203 dbSNP
rs1314227041 3206 dbSNP
rs1050952229 3207 dbSNP
rs1264490574 3224 dbSNP
rs1029820578 3230 dbSNP
rs1319073137 3237 dbSNP
rs1305530941 3243 dbSNP
rs1409699851 3246 dbSNP
rs769733147 3251 dbSNP
rs944776682 3256 dbSNP
rs774437348 3267 dbSNP
rs1040425413 3268 dbSNP
rs1390359477 3295 dbSNP
rs903164245 3299 dbSNP
rs747731536 3301 dbSNP
rs150309964 3302 dbSNP
rs893302237 3307 dbSNP
rs533989764 3314 dbSNP
rs1023552753 3315 dbSNP
rs1449366478 3316 dbSNP
rs1266279573 3319 dbSNP
rs1426813511 3331 dbSNP
rs1205310802 3333 dbSNP
rs1487066904 3335 dbSNP
rs137906326 3338 dbSNP
rs971205565 3345 dbSNP
rs1324965076 3346 dbSNP
rs398702 3347 dbSNP
rs1015238151 3356 dbSNP
rs73328309 3380 dbSNP
rs1466761701 3390 dbSNP
rs1044182540 3394 dbSNP
rs567493470 3396 dbSNP
rs775946550 3401 dbSNP
rs1440618623 3406 dbSNP
rs1386890428 3407 dbSNP
rs547797856 3412 dbSNP
rs561403338 3413 dbSNP
rs1273513396 3418 dbSNP
rs1370181859 3425 dbSNP
rs919811348 3435 dbSNP
rs1178474612 3437 dbSNP
rs1476773111 3452 dbSNP
rs1376525027 3458 dbSNP
rs144897083 3461 dbSNP
rs1219971208 3462 dbSNP
rs1429856915 3467 dbSNP
rs138742128 3469 dbSNP
rs533462703 3484 dbSNP
rs1052720609 3485 dbSNP
rs1462027433 3489 dbSNP
rs1316099670 3492 dbSNP
rs1200643185 3496 dbSNP
rs1265582000 3502 dbSNP
rs552009211 3511 dbSNP
rs764302938 3514 dbSNP
rs891496416 3515 dbSNP
rs998249051 3516 dbSNP
rs754188369 3518 dbSNP
rs944832148 3520 dbSNP
rs181280815 3523 dbSNP
rs755459544 3526 dbSNP
rs903196840 3527 dbSNP
rs934612650 3534 dbSNP
rs1054715243 3537 dbSNP
rs1383201962 3538 dbSNP
rs1338646050 3546 dbSNP
rs570193176 3552 dbSNP
rs893428942 3562 dbSNP
rs1007739356 3563 dbSNP
rs1463055720 3569 dbSNP
rs1387987385 3570 dbSNP
rs1187506318 3571 dbSNP
rs1017753407 3573 dbSNP
rs1013578036 3590 dbSNP
rs537362179 3592 dbSNP
rs1044598474 3593 dbSNP
rs1442286193 3594 dbSNP
rs868383438 3595 dbSNP
rs963626285 3610 dbSNP
rs867170083 3611 dbSNP
rs907347219 3622 dbSNP
rs1170847985 3626 dbSNP
rs1424969712 3629 dbSNP
rs1340114083 3636 dbSNP
rs1274243816 3637 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000258111.4 | 3UTR | AAAAGAUUGGGAAAACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells -0.853 1.2e-7 -0.604 1.1e-3 23 Click to see details
GSE28544 Breast cancer -0.662 2.1e-4 -0.658 2.4e-4 24 Click to see details
GSE19783 ER+ ER+ breast cancer -0.452 2.3e-2 -0.268 1.3e-1 20 Click to see details
GSE19536 Breast cancer -0.171 4.4e-2 -0.189 3.0e-2 100 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.302 7.1e-2 -0.206 1.6e-1 25 Click to see details
GSE19783 ER- ER- breast cancer -0.138 1.1e-1 -0.165 7.3e-2 79 Click to see details
GSE26953 Aortic valvular endothelial cells 0.233 1.4e-1 0.267 1.0e-1 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.173 2.3e-1 -0.238 1.6e-1 20 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.322 2.4e-1 0.179 3.5e-1 7 Click to see details
GSE19350 CNS germ cell tumors -0.165 3.0e-1 0.180 2.9e-1 12 Click to see details
GSE17498 Multiple myeloma -0.075 3.2e-1 -0.171 1.5e-1 40 Click to see details
GSE38226 Liver fibrosis -0.105 3.3e-1 0.036 4.4e-1 21 Click to see details
GSE32688 Pancreatic cancer 0.077 3.4e-1 0.287 5.6e-2 32 Click to see details
GSE21687 Ependynoma primary tumors -0.042 3.7e-1 -0.098 2.2e-1 64 Click to see details
GSE28260 Renal cortex and medulla -0.038 4.5e-1 -0.143 3.2e-1 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.014 4.7e-1 -0.045 4.2e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
CHOL -0.85 0.08 -1.000 0.5 4 Click to see details
PRAD 0.299 0.08 0.322 0.07 23 Click to see details
UCEC -0.361 0.09 -0.218 0.22 15 Click to see details
KIRC 0.324 0.14 0.571 0.02 13 Click to see details
KIRP -0.371 0.21 -0.429 0.17 7 Click to see details
KICH -0.414 0.24 -0.400 0.25 5 Click to see details
BRCA -0.064 0.3 -0.101 0.2 72 Click to see details
STAD -0.321 0.3 -0.300 0.31 5 Click to see details
LIHC 0.092 0.36 0.055 0.41 18 Click to see details
THCA 0.063 0.38 0.050 0.41 24 Click to see details
LUAD -0.103 0.4 -0.262 0.27 8 Click to see details
LUSC -0.013 0.48 0.109 0.33 19 Click to see details
ESCA -0.038 0.48 -0.800 0.1 4 Click to see details
HNSC 0.008 0.49 0.053 0.41 23 Click to see details
HNSC 0.008 0.49 0.053 0.41 23 Click to see details
HNSC 0.008 0.49 0.053 0.41 23 Click to see details
HNSC 0.008 0.49 0.053 0.41 23 Click to see details
HNSC 0.008 0.49 0.053 0.41 23 Click to see details
HNSC 0.008 0.49 0.053 0.41 23 Click to see details
60 hsa-miR-190b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT054581 IGF1 insulin like growth factor 1 4 1
MIRT066966 ATXN7L3B ataxin 7 like 3B 2 2
MIRT192449 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT250414 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT306294 KLHL24 kelch like family member 24 2 2
MIRT355845 SGMS2 sphingomyelin synthase 2 2 4
MIRT437770 MTMR6 myotubularin related protein 6 1 1
MIRT437771 MTMR6 myotubularin related protein 6 1 1
MIRT437772 Mtmr6 myotubularin related protein 6 1 1
MIRT444672 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446389 PCDHB11 protocadherin beta 11 2 2
MIRT446634 SDC3 syndecan 3 2 2
MIRT449410 TRIM5 tripartite motif containing 5 2 2
MIRT449560 GPC5 glypican 5 2 2
MIRT469928 PTPRJ protein tyrosine phosphatase, receptor type J 2 6
MIRT473736 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT474210 LDHA lactate dehydrogenase A 2 2
MIRT474583 KLF6 Kruppel like factor 6 2 2
MIRT476732 FOXN2 forkhead box N2 2 2
MIRT478455 DAB2 DAB2, clathrin adaptor protein 2 2
MIRT495327 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 4
MIRT498615 MTRNR2L10 MT-RNR2-like 10 2 12
MIRT501734 OVOL1 ovo like transcriptional repressor 1 2 2
MIRT501849 MTRNR2L8 MT-RNR2-like 8 2 14
MIRT504678 CYGB cytoglobin 2 4
MIRT506517 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT507984 BCL2L13 BCL2 like 13 2 4
MIRT508444 ZNF608 zinc finger protein 608 2 4
MIRT511366 IL6ST interleukin 6 signal transducer 2 4
MIRT520515 TRA2B transformer 2 beta homolog 2 2
MIRT524571 CALML4 calmodulin like 4 2 4
MIRT531896 INVS inversin 2 4
MIRT533916 TATDN2 TatD DNase domain containing 2 2 2
MIRT537503 FAM13B family with sequence similarity 13 member B 2 2
MIRT541689 CCDC160 coiled-coil domain containing 160 2 8
MIRT544419 ZNF460 zinc finger protein 460 2 4
MIRT544615 CSDE1 cold shock domain containing E1 2 2
MIRT545076 IL7R interleukin 7 receptor 2 2
MIRT545849 ZNF264 zinc finger protein 264 2 4
MIRT547436 MED4 mediator complex subunit 4 2 2
MIRT550157 ZNF223 zinc finger protein 223 2 4
MIRT553948 STAMBP STAM binding protein 2 2
MIRT554395 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT555667 PGAM4 phosphoglycerate mutase family member 4 2 4
MIRT564193 PM20D2 peptidase M20 domain containing 2 2 2
MIRT566792 MKL2 MKL1/myocardin like 2 2 2
MIRT566843 LRRC58 leucine rich repeat containing 58 2 2
MIRT572516 KIAA0232 KIAA0232 2 2
MIRT607428 NOTCH2NL notch 2 N-terminal like 2 10
MIRT627779 RAB30 RAB30, member RAS oncogene family 2 2
MIRT635159 ENO4 enolase family member 4 2 2
MIRT642159 ADCYAP1R1 ADCYAP receptor type I 3 2
MIRT646205 DUSP10 dual specificity phosphatase 10 2 2
MIRT657007 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT665817 TMEM161B transmembrane protein 161B 2 2
MIRT667488 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT707098 ZNF850 zinc finger protein 850 2 2
MIRT708719 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT735521 HUS1 HUS1 checkpoint clamp component 3 0
MIRT736644 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miR-190b Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-190b Atorvastatin approved 60823 Microarray PC3 prostate cancer cells 23936432 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-190b Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)

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