pre-miRNA Information
pre-miRNA hsa-mir-4446   
Genomic Coordinates chr3: 113594876 - 113594942
Description Homo sapiens miR-4446 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4446-5p
Sequence 8| AUUUCCCUGCCAUUCCCUUGGC |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1356015605 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GSTO2   
Synonyms GSTO 2-2, bA127L20.1
Description glutathione S-transferase omega 2
Transcript NM_183239   
Expression
Putative miRNA Targets on GSTO2
3'UTR of GSTO2
(miRNA target sites are highlighted)
>GSTO2|NM_183239|3'UTR
   1 GTCTCACTGTCCACCCCTTCGCTGTCCAGAATTCCCCAGCTTGTTGGGAGTCTACGTCACGGCTTGTCTTGGGAACCAAT
  81 CCGTCTCTCTTTCTTTTCTTTGAAGTTCCCAATAAAATGAAAACAGGAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
 161 AAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgGUUCCCUUAC---CGUCCCUUua 5'
            |||   ||||    |||| ||  
Target 5' ccCAATAAAATGAAAACAGGAAAtg 3'
108 - 132 104.00 -9.10
2
miRNA  3' cgguucccuuaccguCCCUUua 5'
                         |||||  
Target 5' gtcacggcttgtcttGGGAAcc 3'
56 - 77 100.00 -9.30
3
miRNA  3' cgguucccuuaccguCCCUUua 5'
                         ||||:  
Target 5' attccccagcttgttGGGAGtc 3'
31 - 52 84.00 -10.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26731056 6 COSMIC
COSN30465004 17 COSMIC
COSN26978240 21 COSMIC
COSN31561448 22 COSMIC
COSN31504851 37 COSMIC
COSN30448316 38 COSMIC
COSN30505917 39 COSMIC
COSN30116436 84 COSMIC
COSN31567297 106 COSMIC
COSN30149570 109 COSMIC
COSN30106010 119 COSMIC
COSN30486908 120 COSMIC
COSN30487157 121 COSMIC
COSN30508741 133 COSMIC
COSN31561360 134 COSMIC
COSN8526013 202 COSMIC
COSN28873884 212 COSMIC
COSN19451090 475 COSMIC
COSN1111639 561 COSMIC
COSN25530186 1003 COSMIC
COSN25819169 1034 COSMIC
COSN8917382 1680 COSMIC
COSN15191706 1718 COSMIC
COSN27393786 2231 COSMIC
COSN14626459 2313 COSMIC
COSN25584942 2458 COSMIC
COSN27704775 2615 COSMIC
COSN22899917 3463 COSMIC
COSN21093940 4706 COSMIC
COSN29630447 4831 COSMIC
COSN6053902 5208 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760954157 2 dbSNP
rs771043048 10 dbSNP
rs776819771 14 dbSNP
rs759500429 16 dbSNP
rs1161484098 17 dbSNP
rs765318521 18 dbSNP
rs201163607 21 dbSNP
rs763491953 22 dbSNP
rs578051135 23 dbSNP
rs1406057439 24 dbSNP
rs375543595 25 dbSNP
rs755856293 30 dbSNP
rs1348960695 37 dbSNP
rs1225843283 43 dbSNP
rs1308610151 44 dbSNP
rs779553594 52 dbSNP
rs1348460091 54 dbSNP
rs1279049398 55 dbSNP
rs1019810633 56 dbSNP
rs543547421 61 dbSNP
rs889958671 63 dbSNP
rs1244842232 67 dbSNP
rs1252061732 75 dbSNP
rs1213571425 80 dbSNP
rs530371346 80 dbSNP
rs557170796 83 dbSNP
rs139792812 84 dbSNP
rs1417207328 84 dbSNP
rs376999695 84 dbSNP
rs997018038 86 dbSNP
rs901500821 88 dbSNP
rs997167811 88 dbSNP
rs1374807137 90 dbSNP
rs757015249 90 dbSNP
rs1428096929 94 dbSNP
rs1028875998 98 dbSNP
rs952832031 104 dbSNP
rs984589777 105 dbSNP
rs1189770481 110 dbSNP
rs908558865 116 dbSNP
rs1377821240 117 dbSNP
rs1466852682 118 dbSNP
rs891524108 120 dbSNP
rs544116859 126 dbSNP
rs879354005 131 dbSNP
rs772394007 146 dbSNP
rs778825394 148 dbSNP
rs1377240788 154 dbSNP
rs779040041 156 dbSNP
rs928537032 163 dbSNP
rs746145864 164 dbSNP
rs1298620014 165 dbSNP
rs970299859 170 dbSNP
rs1226312421 171 dbSNP
rs1055636967 178 dbSNP
rs1036052689 191 dbSNP
rs980043326 191 dbSNP
rs1235512434 199 dbSNP
rs1463644975 201 dbSNP
rs960007905 201 dbSNP
rs1348555115 202 dbSNP
rs1413422331 206 dbSNP
rs1298783802 207 dbSNP
rs1209164283 213 dbSNP
rs1352964469 214 dbSNP
rs1166911441 222 dbSNP
rs972702709 227 dbSNP
rs915689228 228 dbSNP
rs542786942 230 dbSNP
rs1205284990 231 dbSNP
rs756618259 235 dbSNP
rs1447079893 241 dbSNP
rs559638464 242 dbSNP
rs1479488657 251 dbSNP
rs780328657 261 dbSNP
rs1213862590 262 dbSNP
rs528741319 265 dbSNP
rs541027172 266 dbSNP
rs1043169364 267 dbSNP
rs902885068 269 dbSNP
rs1041285496 273 dbSNP
rs934309807 274 dbSNP
rs901457329 292 dbSNP
rs1390884739 294 dbSNP
rs1371194172 296 dbSNP
rs182632454 304 dbSNP
rs901441034 305 dbSNP
rs12219470 307 dbSNP
rs1011243454 318 dbSNP
rs777281748 323 dbSNP
rs888585970 325 dbSNP
rs1357724349 347 dbSNP
rs45579835 349 dbSNP
rs770404925 350 dbSNP
rs1254279992 351 dbSNP
rs1193910278 353 dbSNP
rs140671382 354 dbSNP
rs982099264 358 dbSNP
rs187778360 365 dbSNP
rs959985859 366 dbSNP
rs1368203618 371 dbSNP
rs959914272 371 dbSNP
rs549164542 375 dbSNP
rs1299110989 379 dbSNP
rs1321411360 381 dbSNP
rs1383703808 383 dbSNP
rs1025610433 385 dbSNP
rs1318464654 386 dbSNP
rs1157950292 387 dbSNP
rs952727293 388 dbSNP
rs1396403133 392 dbSNP
rs1173686709 393 dbSNP
rs1453476676 394 dbSNP
rs984213875 395 dbSNP
rs1449113336 396 dbSNP
rs1262812692 397 dbSNP
rs911325461 402 dbSNP
rs373369992 408 dbSNP
rs1463298953 413 dbSNP
rs192899092 415 dbSNP
rs534566721 420 dbSNP
rs1235099183 421 dbSNP
rs915759063 425 dbSNP
rs1215013725 426 dbSNP
rs947194677 427 dbSNP
rs978558295 433 dbSNP
rs1317333772 440 dbSNP
rs1398124806 446 dbSNP
rs935552696 460 dbSNP
rs1313024173 465 dbSNP
rs145768674 474 dbSNP
rs912898365 480 dbSNP
rs1423719208 484 dbSNP
rs947078213 495 dbSNP
rs1042802000 510 dbSNP
rs45468393 512 dbSNP
rs746141475 512 dbSNP
rs1212145273 517 dbSNP
rs537583698 524 dbSNP
rs184903140 526 dbSNP
rs1485395084 540 dbSNP
rs187440981 541 dbSNP
rs1197814826 561 dbSNP
rs760467842 572 dbSNP
rs900824526 584 dbSNP
rs536459174 599 dbSNP
rs1269438539 602 dbSNP
rs895652815 607 dbSNP
rs17116848 612 dbSNP
rs888647335 617 dbSNP
rs1435889973 620 dbSNP
rs1006133416 622 dbSNP
rs753835236 624 dbSNP
rs1015723645 633 dbSNP
rs1410232575 636 dbSNP
rs952677195 645 dbSNP
rs573528576 649 dbSNP
rs138234928 653 dbSNP
rs761809015 657 dbSNP
rs897249537 665 dbSNP
rs1005989608 669 dbSNP
rs1420405481 671 dbSNP
rs1018294607 677 dbSNP
rs964446786 693 dbSNP
rs976871932 698 dbSNP
rs1287560290 704 dbSNP
rs1184057767 710 dbSNP
rs1438676065 712 dbSNP
rs1326625003 714 dbSNP
rs149585275 719 dbSNP
rs922735767 725 dbSNP
rs1003587812 729 dbSNP
rs988346818 735 dbSNP
rs577545709 739 dbSNP
rs915524866 741 dbSNP
rs1245460905 743 dbSNP
rs1481947689 772 dbSNP
rs1035035341 774 dbSNP
rs959605899 775 dbSNP
rs765275348 783 dbSNP
rs1023284606 784 dbSNP
rs968619637 789 dbSNP
rs937044994 800 dbSNP
rs1471818063 802 dbSNP
rs1167320264 803 dbSNP
rs750491163 819 dbSNP
rs895643072 821 dbSNP
rs1162816956 825 dbSNP
rs924408092 829 dbSNP
rs994030288 837 dbSNP
rs543414149 838 dbSNP
rs1212824004 840 dbSNP
rs1356202115 842 dbSNP
rs144256507 847 dbSNP
rs1286272002 849 dbSNP
rs1224216269 858 dbSNP
rs1349362774 865 dbSNP
rs560167801 867 dbSNP
rs976443166 881 dbSNP
rs45505298 884 dbSNP
rs549201354 885 dbSNP
rs932292342 889 dbSNP
rs79418809 894 dbSNP
rs1371257129 900 dbSNP
rs1018659433 908 dbSNP
rs559277368 909 dbSNP
rs1284372360 912 dbSNP
rs1320876969 917 dbSNP
rs45549740 918 dbSNP
rs780450951 920 dbSNP
rs1029737651 927 dbSNP
rs1037203892 929 dbSNP
rs1226114793 942 dbSNP
rs1395915858 949 dbSNP
rs956858055 950 dbSNP
rs1487392497 952 dbSNP
rs1342277103 955 dbSNP
rs988294583 961 dbSNP
rs369898483 966 dbSNP
rs968669314 967 dbSNP
rs1235840716 973 dbSNP
rs372411705 977 dbSNP
rs981047127 987 dbSNP
rs45526940 993 dbSNP
rs1250483400 1001 dbSNP
rs1302251920 1004 dbSNP
rs192030612 1007 dbSNP
rs376192180 1008 dbSNP
rs1190111448 1016 dbSNP
rs1290969468 1025 dbSNP
rs895171311 1026 dbSNP
rs551367918 1027 dbSNP
rs992564079 1029 dbSNP
rs1296497874 1032 dbSNP
rs1436670024 1035 dbSNP
rs1376089387 1037 dbSNP
rs774394004 1038 dbSNP
rs781679168 1039 dbSNP
rs1430491953 1044 dbSNP
rs1000046388 1048 dbSNP
rs34361770 1048 dbSNP
rs1046901903 1049 dbSNP
rs1031480294 1054 dbSNP
rs1212862126 1067 dbSNP
rs1440213047 1071 dbSNP
rs1254862280 1076 dbSNP
rs1334613563 1080 dbSNP
rs888294945 1092 dbSNP
rs571640398 1094 dbSNP
rs955860958 1099 dbSNP
rs1445288062 1102 dbSNP
rs117527269 1114 dbSNP
rs899824758 1139 dbSNP
rs1356212018 1142 dbSNP
rs1302308669 1144 dbSNP
rs550524051 1151 dbSNP
rs1365238358 1152 dbSNP
rs1464781876 1155 dbSNP
rs184583222 1157 dbSNP
rs922343924 1158 dbSNP
rs1171312000 1167 dbSNP
rs1421144710 1168 dbSNP
rs7085725 1168 dbSNP
rs1190017055 1169 dbSNP
rs189303831 1170 dbSNP
rs1340717416 1171 dbSNP
rs892529683 1172 dbSNP
rs553572445 1177 dbSNP
rs985540100 1190 dbSNP
rs1179597538 1191 dbSNP
rs1481449974 1193 dbSNP
rs182136555 1194 dbSNP
rs560740503 1195 dbSNP
rs1250164773 1197 dbSNP
rs968282275 1210 dbSNP
rs981421717 1226 dbSNP
rs1341577915 1230 dbSNP
rs958596701 1233 dbSNP
rs941610355 1234 dbSNP
rs992470745 1236 dbSNP
rs1298983333 1242 dbSNP
rs7067832 1245 dbSNP
rs548590241 1257 dbSNP
rs918786450 1258 dbSNP
rs559009901 1265 dbSNP
rs545433695 1267 dbSNP
rs895213013 1268 dbSNP
rs1250561161 1270 dbSNP
rs941238814 1274 dbSNP
rs1012298883 1287 dbSNP
rs1040015526 1294 dbSNP
rs1044135549 1299 dbSNP
rs1357413553 1303 dbSNP
rs1265380014 1306 dbSNP
rs1424128044 1307 dbSNP
rs575859646 1316 dbSNP
rs543451066 1317 dbSNP
rs1031532875 1326 dbSNP
rs955913797 1333 dbSNP
rs563227525 1334 dbSNP
rs766247118 1337 dbSNP
rs1327751928 1349 dbSNP
rs1043849707 1351 dbSNP
rs148298301 1355 dbSNP
rs1318035817 1356 dbSNP
rs542733026 1358 dbSNP
rs559530662 1367 dbSNP
rs1455251683 1375 dbSNP
rs7067878 1376 dbSNP
rs1235993318 1377 dbSNP
rs1157508113 1386 dbSNP
rs34008821 1395 dbSNP
rs764966754 1400 dbSNP
rs1396509288 1403 dbSNP
rs1193809414 1405 dbSNP
rs960919614 1407 dbSNP
rs985201030 1409 dbSNP
rs1013853689 1410 dbSNP
rs1023938170 1411 dbSNP
rs909550342 1413 dbSNP
rs982524553 1415 dbSNP
rs1275964651 1422 dbSNP
rs866632556 1423 dbSNP
rs1351517790 1431 dbSNP
rs1305916942 1436 dbSNP
rs909654146 1441 dbSNP
rs545156330 1446 dbSNP
rs975241914 1448 dbSNP
rs1383903875 1454 dbSNP
rs1270222397 1456 dbSNP
rs1361077589 1457 dbSNP
rs921112288 1458 dbSNP
rs1417332268 1459 dbSNP
rs77618441 1464 dbSNP
rs1208178722 1470 dbSNP
rs1050999883 1471 dbSNP
rs1477473517 1476 dbSNP
rs1453409448 1482 dbSNP
rs918839065 1488 dbSNP
rs1197181263 1489 dbSNP
rs939534201 1492 dbSNP
rs992744728 1498 dbSNP
rs1476906550 1499 dbSNP
rs1264540582 1502 dbSNP
rs1161153446 1511 dbSNP
rs184454004 1512 dbSNP
rs903908578 1513 dbSNP
rs1002717926 1521 dbSNP
rs1055260803 1525 dbSNP
rs1344555394 1531 dbSNP
rs1254090009 1536 dbSNP
rs1340832365 1550 dbSNP
rs1277510162 1553 dbSNP
rs1398024317 1561 dbSNP
rs1164912009 1564 dbSNP
rs550610108 1567 dbSNP
rs866417840 1570 dbSNP
rs948149494 1575 dbSNP
rs1013837339 1576 dbSNP
rs768507946 1584 dbSNP
rs1324723675 1591 dbSNP
rs1399602406 1603 dbSNP
rs1169222062 1606 dbSNP
rs1467523705 1625 dbSNP
rs1424728789 1630 dbSNP
rs1193615849 1647 dbSNP
rs1477112178 1651 dbSNP
rs1259762728 1656 dbSNP
rs903889051 1657 dbSNP
rs1188322604 1669 dbSNP
rs1442131557 1679 dbSNP
rs1331080929 1685 dbSNP
rs1026605300 1687 dbSNP
rs1318370087 1690 dbSNP
rs1434721619 1705 dbSNP
rs951008050 1711 dbSNP
rs1003910428 1712 dbSNP
rs935333448 1713 dbSNP
rs758445676 1719 dbSNP
rs1338133495 1723 dbSNP
rs962465841 1733 dbSNP
rs189330404 1734 dbSNP
rs1401537456 1735 dbSNP
rs1170386319 1739 dbSNP
rs530169116 1744 dbSNP
rs776380992 1747 dbSNP
rs1164281562 1748 dbSNP
rs761703188 1750 dbSNP
rs1472520217 1754 dbSNP
rs1235764944 1759 dbSNP
rs955249024 1774 dbSNP
rs1458364531 1785 dbSNP
rs1358503999 1786 dbSNP
rs998021494 1787 dbSNP
rs1210562912 1794 dbSNP
rs531450627 1797 dbSNP
rs1290526394 1803 dbSNP
rs1029925553 1806 dbSNP
rs1227625918 1808 dbSNP
rs1353686664 1808 dbSNP
rs1449863033 1809 dbSNP
rs1184067379 1817 dbSNP
rs889597347 1821 dbSNP
rs1007079734 1825 dbSNP
rs1016664806 1828 dbSNP
rs546756967 1829 dbSNP
rs538875299 1847 dbSNP
rs945309151 1851 dbSNP
rs1369860210 1854 dbSNP
rs1043709770 1857 dbSNP
rs1405255808 1858 dbSNP
rs925278983 1859 dbSNP
rs938075401 1862 dbSNP
rs1440619578 1863 dbSNP
rs972383011 1867 dbSNP
rs1162168093 1874 dbSNP
rs1025279397 1879 dbSNP
rs1404154164 1880 dbSNP
rs537540062 1894 dbSNP
rs992394722 1896 dbSNP
rs1047993559 1905 dbSNP
rs753717792 1906 dbSNP
rs886660477 1906 dbSNP
rs1216704103 1921 dbSNP
rs916764116 1929 dbSNP
rs765239071 1933 dbSNP
rs1235985472 1934 dbSNP
rs1245608071 1947 dbSNP
rs1264999664 1968 dbSNP
rs1370228034 1969 dbSNP
rs979964912 1982 dbSNP
rs1275785235 1983 dbSNP
rs1016558439 1987 dbSNP
rs925364591 1994 dbSNP
rs898191194 1996 dbSNP
rs750284037 2001 dbSNP
rs1052391184 2008 dbSNP
rs901830363 2010 dbSNP
rs933916838 2011 dbSNP
rs955197050 2035 dbSNP
rs1482577599 2037 dbSNP
rs1425671143 2040 dbSNP
rs1190399875 2045 dbSNP
rs368015685 2048 dbSNP
rs1051010909 2056 dbSNP
rs1265257046 2074 dbSNP
rs1179804779 2075 dbSNP
rs1487692420 2091 dbSNP
rs566929088 2100 dbSNP
rs1212635736 2103 dbSNP
rs1312393702 2108 dbSNP
rs1279863012 2127 dbSNP
rs3740466 2128 dbSNP
rs1006722975 2132 dbSNP
rs1280675867 2136 dbSNP
rs979765756 2137 dbSNP
rs1339993672 2148 dbSNP
rs1296399092 2152 dbSNP
rs758026050 2162 dbSNP
rs571399225 2163 dbSNP
rs1359962904 2168 dbSNP
rs925299922 2169 dbSNP
rs898256221 2172 dbSNP
rs993878378 2180 dbSNP
rs990900664 2182 dbSNP
rs1025327194 2186 dbSNP
rs1450831222 2190 dbSNP
rs949458953 2194 dbSNP
rs559067607 2195 dbSNP
rs1371773139 2202 dbSNP
rs1183089372 2205 dbSNP
rs1483251249 2212 dbSNP
rs886606625 2216 dbSNP
rs942292170 2217 dbSNP
rs1321894020 2218 dbSNP
rs1260361947 2225 dbSNP
rs1219837217 2228 dbSNP
rs1296878409 2229 dbSNP
rs147434049 2237 dbSNP
rs1397867697 2240 dbSNP
rs1404604776 2248 dbSNP
rs1038400906 2254 dbSNP
rs898144132 2260 dbSNP
rs992842763 2263 dbSNP
rs1396765532 2264 dbSNP
rs1312282854 2275 dbSNP
rs1421392349 2278 dbSNP
rs1023885410 2292 dbSNP
rs1423911966 2294 dbSNP
rs1412393763 2295 dbSNP
rs1179796064 2300 dbSNP
rs11191993 2313 dbSNP
rs538492838 2319 dbSNP
rs571484848 2322 dbSNP
rs979631022 2345 dbSNP
rs538535080 2349 dbSNP
rs1199660419 2359 dbSNP
rs139731927 2362 dbSNP
rs890853512 2374 dbSNP
rs112435374 2388 dbSNP
rs57617657 2393 dbSNP
rs766508764 2397 dbSNP
rs988158807 2398 dbSNP
rs923304968 2399 dbSNP
rs1341416931 2404 dbSNP
rs76508192 2409 dbSNP
rs1244126789 2412 dbSNP
rs1379388336 2413 dbSNP
rs755245187 2427 dbSNP
rs542769753 2430 dbSNP
rs1257602435 2431 dbSNP
rs751021677 2441 dbSNP
rs1051493360 2443 dbSNP
rs911133616 2444 dbSNP
rs1199489271 2445 dbSNP
rs781718244 2446 dbSNP
rs942578730 2447 dbSNP
rs979369504 2450 dbSNP
rs1032697034 2451 dbSNP
rs1348844923 2451 dbSNP
rs1038213470 2458 dbSNP
rs1177561694 2458 dbSNP
rs1380536157 2458 dbSNP
rs1391326492 2458 dbSNP
rs1439499816 2459 dbSNP
rs1449456029 2462 dbSNP
rs1168971940 2467 dbSNP
rs552812928 2474 dbSNP
rs959387902 2477 dbSNP
rs753129617 2484 dbSNP
rs276205 2492 dbSNP
rs1302429374 2493 dbSNP
rs1220352596 2496 dbSNP
rs1355869688 2501 dbSNP
rs1404243924 2503 dbSNP
rs1310291559 2504 dbSNP
rs917940113 2526 dbSNP
rs1333806128 2537 dbSNP
rs1437328615 2540 dbSNP
rs547496434 2547 dbSNP
rs1046828999 2551 dbSNP
rs896178810 2558 dbSNP
rs949408315 2562 dbSNP
rs1421004979 2566 dbSNP
rs1360554771 2572 dbSNP
rs1157713711 2587 dbSNP
rs565088297 2589 dbSNP
rs1362476126 2606 dbSNP
rs530757525 2615 dbSNP
rs1434056191 2623 dbSNP
rs1013242776 2640 dbSNP
rs942218728 2645 dbSNP
rs749700933 2656 dbSNP
rs1023686896 2658 dbSNP
rs1169135953 2659 dbSNP
rs1037946306 2664 dbSNP
rs771631241 2666 dbSNP
rs1348795028 2670 dbSNP
rs1257614796 2672 dbSNP
rs1233714245 2707 dbSNP
rs932271454 2713 dbSNP
rs1330242412 2714 dbSNP
rs1001499087 2730 dbSNP
rs1281325922 2735 dbSNP
rs1032488237 2737 dbSNP
rs1401728146 2740 dbSNP
rs1340644656 2744 dbSNP
rs1297022701 2755 dbSNP
rs1380232733 2762 dbSNP
rs956858088 2777 dbSNP
rs1403906816 2780 dbSNP
rs1172739361 2784 dbSNP
rs1303361503 2789 dbSNP
rs779539602 2790 dbSNP
rs1466894449 2794 dbSNP
rs1377383885 2797 dbSNP
rs1174956033 2798 dbSNP
rs1312507739 2801 dbSNP
rs988210976 2803 dbSNP
rs1193037774 2810 dbSNP
rs923357132 2836 dbSNP
rs145259883 2839 dbSNP
rs890800732 2845 dbSNP
rs181220030 2850 dbSNP
rs1201204684 2851 dbSNP
rs1253853317 2853 dbSNP
rs1260993887 2865 dbSNP
rs1220453106 2866 dbSNP
rs1318504316 2872 dbSNP
rs1277407945 2884 dbSNP
rs1224626402 2891 dbSNP
rs186245394 2894 dbSNP
rs768277973 2901 dbSNP
rs1007924731 2923 dbSNP
rs546938802 2924 dbSNP
rs986157285 2936 dbSNP
rs1394978362 2948 dbSNP
rs910504850 2949 dbSNP
rs1208800225 2951 dbSNP
rs1246817606 2953 dbSNP
rs1463165909 2954 dbSNP
rs1185245520 2959 dbSNP
rs12572327 2967 dbSNP
rs1467449117 2992 dbSNP
rs150557810 2993 dbSNP
rs1167755201 2999 dbSNP
rs1175840895 3002 dbSNP
rs1370457350 3005 dbSNP
rs1038280572 3018 dbSNP
rs1441935606 3022 dbSNP
rs1459073146 3044 dbSNP
rs748004281 3048 dbSNP
rs902325149 3051 dbSNP
rs1001134046 3057 dbSNP
rs1257169544 3065 dbSNP
rs1428752842 3079 dbSNP
rs919780970 3082 dbSNP
rs552540403 3085 dbSNP
rs1357977827 3086 dbSNP
rs866107259 3096 dbSNP
rs769403765 3098 dbSNP
rs1368267284 3100 dbSNP
rs569463885 3103 dbSNP
rs1032187524 3104 dbSNP
rs1281212529 3105 dbSNP
rs929791966 3108 dbSNP
rs959526553 3109 dbSNP
rs190167091 3115 dbSNP
rs1310898196 3116 dbSNP
rs1449633282 3120 dbSNP
rs1401721290 3124 dbSNP
rs1046880392 3135 dbSNP
rs1408601447 3136 dbSNP
rs1393081214 3137 dbSNP
rs77029826 3147 dbSNP
rs1444314350 3151 dbSNP
rs1383450811 3154 dbSNP
rs1267133510 3162 dbSNP
rs117913158 3177 dbSNP
rs1440204965 3184 dbSNP
rs1237526780 3190 dbSNP
rs1202121908 3198 dbSNP
rs970759203 3204 dbSNP
rs1170792787 3205 dbSNP
rs983518445 3207 dbSNP
rs1356900653 3217 dbSNP
rs1287509148 3223 dbSNP
rs1044751777 3224 dbSNP
rs1378243919 3227 dbSNP
rs904825496 3230 dbSNP
rs1489131618 3232 dbSNP
rs907982258 3234 dbSNP
rs1333189997 3235 dbSNP
rs886983108 3240 dbSNP
rs749691326 3241 dbSNP
rs1267139480 3242 dbSNP
rs973957865 3243 dbSNP
rs1001103412 3251 dbSNP
rs1032540205 3255 dbSNP
rs922126901 3256 dbSNP
rs1473777761 3259 dbSNP
rs755246887 3264 dbSNP
rs956911135 3265 dbSNP
rs1479005900 3268 dbSNP
rs1247052666 3273 dbSNP
rs1052000928 3280 dbSNP
rs1489701144 3283 dbSNP
rs181397641 3284 dbSNP
rs943730568 3289 dbSNP
rs1352345608 3295 dbSNP
rs1281612460 3296 dbSNP
rs1009684861 3310 dbSNP
rs1030883086 3317 dbSNP
rs1350388767 3322 dbSNP
rs369484389 3323 dbSNP
rs1275781901 3324 dbSNP
rs1457297109 3325 dbSNP
rs773210647 3335 dbSNP
rs1301223615 3342 dbSNP
rs1343821069 3347 dbSNP
rs986598321 3352 dbSNP
rs1017617554 3353 dbSNP
rs902230861 3362 dbSNP
rs1344681761 3366 dbSNP
rs1400450052 3368 dbSNP
rs779243304 3370 dbSNP
rs552889679 3373 dbSNP
rs1425834638 3374 dbSNP
rs1175390709 3378 dbSNP
rs963690333 3382 dbSNP
rs974024641 3384 dbSNP
rs1287295859 3389 dbSNP
rs374840712 3392 dbSNP
rs1193934669 3398 dbSNP
rs1485376061 3398 dbSNP
rs919833174 3403 dbSNP
rs1053988322 3415 dbSNP
rs1312882918 3427 dbSNP
rs929842917 3429 dbSNP
rs1279982225 3436 dbSNP
rs1222309888 3442 dbSNP
rs572900844 3443 dbSNP
rs894984754 3446 dbSNP
rs1280566291 3455 dbSNP
rs917716489 3455 dbSNP
rs748340008 3464 dbSNP
rs1290256475 3465 dbSNP
rs139538195 3470 dbSNP
rs555804077 3471 dbSNP
rs1287156782 3475 dbSNP
rs1045205112 3481 dbSNP
rs149691679 3491 dbSNP
rs1251355111 3492 dbSNP
rs1336013162 3497 dbSNP
rs185889232 3505 dbSNP
rs1425495244 3508 dbSNP
rs1171191507 3517 dbSNP
rs1427528180 3518 dbSNP
rs543974866 3520 dbSNP
rs560865653 3521 dbSNP
rs1483300182 3522 dbSNP
rs1244217111 3523 dbSNP
rs879263388 3526 dbSNP
rs369082879 3528 dbSNP
rs1161541231 3538 dbSNP
rs1260371124 3545 dbSNP
rs190890960 3547 dbSNP
rs377743498 3548 dbSNP
rs1293727746 3549 dbSNP
rs1007667082 3560 dbSNP
rs1018101837 3585 dbSNP
rs1379984653 3593 dbSNP
rs114875311 3595 dbSNP
rs1450333874 3595 dbSNP
rs973408251 3597 dbSNP
rs1331745541 3599 dbSNP
rs1461316946 3630 dbSNP
rs1352348096 3641 dbSNP
rs1026278397 3649 dbSNP
rs1284428270 3650 dbSNP
rs1377757925 3652 dbSNP
rs1424098518 3659 dbSNP
rs946314678 3664 dbSNP
rs184074293 3668 dbSNP
rs754439830 3669 dbSNP
rs923632767 3669 dbSNP
rs936382117 3672 dbSNP
rs1345022393 3680 dbSNP
rs1229581569 3684 dbSNP
rs552622159 3687 dbSNP
rs1480517061 3688 dbSNP
rs917784289 3689 dbSNP
rs1272674746 3691 dbSNP
rs1224037107 3692 dbSNP
rs757733295 3693 dbSNP
rs949226761 3694 dbSNP
rs563101176 3695 dbSNP
rs1243912020 3699 dbSNP
rs1291098045 3699 dbSNP
rs187815179 3701 dbSNP
rs894964212 3702 dbSNP
rs1390539663 3710 dbSNP
rs559261988 3713 dbSNP
rs548763731 3714 dbSNP
rs1046278739 3715 dbSNP
rs906426685 3719 dbSNP
rs1161086011 3723 dbSNP
rs372049332 3732 dbSNP
rs770930974 3733 dbSNP
rs899199206 3736 dbSNP
rs936391823 3737 dbSNP
rs1029102432 3746 dbSNP
rs776381747 3748 dbSNP
rs1490564589 3752 dbSNP
rs987570207 3762 dbSNP
rs568776493 3779 dbSNP
rs1167897640 3794 dbSNP
rs1355954534 3794 dbSNP
rs1261458655 3803 dbSNP
rs1238226894 3807 dbSNP
rs1315108258 3809 dbSNP
rs1019088229 3811 dbSNP
rs1303095287 3811 dbSNP
rs1417044194 3813 dbSNP
rs1053388206 3818 dbSNP
rs892109501 3829 dbSNP
rs79118890 3830 dbSNP
rs779591089 3832 dbSNP
rs1360597306 3834 dbSNP
rs1052434979 3840 dbSNP
rs746541545 3846 dbSNP
rs374167469 3850 dbSNP
rs534505398 3852 dbSNP
rs1008133039 3857 dbSNP
rs563955977 3860 dbSNP
rs1178630493 3865 dbSNP
rs34884134 3872 dbSNP
rs989623584 3878 dbSNP
rs754441724 3879 dbSNP
rs1365311859 3880 dbSNP
rs1480977939 3884 dbSNP
rs1436381722 3886 dbSNP
rs1197534729 3892 dbSNP
rs1039168709 3894 dbSNP
rs1262492006 3895 dbSNP
rs570603198 3901 dbSNP
rs1204670678 3903 dbSNP
rs899249586 3904 dbSNP
rs1223834515 3908 dbSNP
rs1322561267 3916 dbSNP
rs916306598 3920 dbSNP
rs780897629 3925 dbSNP
rs1337802199 3930 dbSNP
rs947804884 3945 dbSNP
rs1046226137 3949 dbSNP
rs1026330552 3955 dbSNP
rs906372798 3962 dbSNP
rs940596321 3977 dbSNP
rs1429015961 3978 dbSNP
rs1174786342 3982 dbSNP
rs1478907898 3996 dbSNP
rs950680577 3998 dbSNP
rs1192499678 3999 dbSNP
rs1221346107 3999 dbSNP
rs1004159170 4001 dbSNP
rs1258100479 4002 dbSNP
rs1204212965 4005 dbSNP
rs1279559447 4006 dbSNP
rs1323173524 4012 dbSNP
rs1201835667 4013 dbSNP
rs1249915642 4014 dbSNP
rs1260995019 4018 dbSNP
rs1200347275 4019 dbSNP
rs1465405319 4021 dbSNP
rs899143978 4034 dbSNP
rs1025311818 4042 dbSNP
rs970622921 4043 dbSNP
rs1341739117 4046 dbSNP
rs1028962922 4053 dbSNP
rs577491196 4061 dbSNP
rs1453968687 4071 dbSNP
rs1406045541 4075 dbSNP
rs1335093530 4085 dbSNP
rs1240305215 4091 dbSNP
rs889174599 4094 dbSNP
rs747694294 4116 dbSNP
rs1370251046 4117 dbSNP
rs1424014784 4123 dbSNP
rs1019035672 4125 dbSNP
rs1443893678 4128 dbSNP
rs967550596 4135 dbSNP
rs1467851860 4139 dbSNP
rs978072402 4158 dbSNP
rs1160936953 4167 dbSNP
rs117075279 4171 dbSNP
rs201622402 4171 dbSNP
rs957873018 4187 dbSNP
rs1244644713 4193 dbSNP
rs1382626357 4194 dbSNP
rs190881061 4209 dbSNP
rs374068186 4211 dbSNP
rs538384310 4212 dbSNP
rs182926623 4214 dbSNP
rs574960874 4235 dbSNP
rs537660286 4254 dbSNP
rs187035718 4256 dbSNP
rs112927816 4260 dbSNP
rs370198130 4263 dbSNP
rs1164247845 4269 dbSNP
rs1325237650 4271 dbSNP
rs1439043476 4278 dbSNP
rs574688067 4279 dbSNP
rs981893169 4286 dbSNP
rs1160224961 4287 dbSNP
rs540512032 4288 dbSNP
rs75147857 4300 dbSNP
rs912136495 4301 dbSNP
rs116006674 4304 dbSNP
rs780113641 4307 dbSNP
rs1036674746 4309 dbSNP
rs1356648559 4314 dbSNP
rs1039627607 4320 dbSNP
rs536215739 4330 dbSNP
rs749275856 4330 dbSNP
rs1050346673 4336 dbSNP
rs191805722 4339 dbSNP
rs1453315594 4340 dbSNP
rs562984089 4343 dbSNP
rs889122131 4345 dbSNP
rs145486160 4349 dbSNP
rs276206 4352 dbSNP
rs1014665341 4353 dbSNP
rs1404642757 4354 dbSNP
rs1363779072 4358 dbSNP
rs140238572 4372 dbSNP
rs1452396161 4374 dbSNP
rs999006000 4377 dbSNP
rs1407210861 4380 dbSNP
rs971054986 4385 dbSNP
rs368081134 4392 dbSNP
rs113752663 4396 dbSNP
rs957854125 4404 dbSNP
rs1243320266 4406 dbSNP
rs957606513 4410 dbSNP
rs989214288 4411 dbSNP
rs1013595988 4412 dbSNP
rs1365298555 4413 dbSNP
rs1403512583 4419 dbSNP
rs1023299868 4423 dbSNP
rs1434453367 4425 dbSNP
rs1290420328 4427 dbSNP
rs759695447 4432 dbSNP
rs1238407986 4434 dbSNP
rs913646204 4439 dbSNP
rs1358567769 4441 dbSNP
rs1210321709 4444 dbSNP
rs1223111647 4448 dbSNP
rs1343917295 4449 dbSNP
rs966452191 4452 dbSNP
rs987544707 4461 dbSNP
rs981839404 4466 dbSNP
rs548049279 4471 dbSNP
rs927728440 4480 dbSNP
rs140706378 4503 dbSNP
rs1175497563 4511 dbSNP
rs920424425 4511 dbSNP
rs930541075 4514 dbSNP
rs1179235309 4515 dbSNP
rs1050335652 4518 dbSNP
rs910548379 4556 dbSNP
rs767648091 4563 dbSNP
rs775840150 4575 dbSNP
rs1039288414 4577 dbSNP
rs1040367751 4584 dbSNP
rs920783599 4592 dbSNP
rs1207378256 4594 dbSNP
rs1463090583 4597 dbSNP
rs1264111725 4599 dbSNP
rs1203466983 4600 dbSNP
rs1321613754 4601 dbSNP
rs1298016647 4604 dbSNP
rs867308783 4606 dbSNP
rs1215167007 4611 dbSNP
rs930798267 4618 dbSNP
rs1365559901 4619 dbSNP
rs903246931 4623 dbSNP
rs538645593 4628 dbSNP
rs1054597489 4632 dbSNP
rs1371574162 4635 dbSNP
rs1355859280 4636 dbSNP
rs1390972699 4636 dbSNP
rs886532864 4637 dbSNP
rs893329905 4638 dbSNP
rs950125877 4640 dbSNP
rs1327142219 4643 dbSNP
rs1446931915 4644 dbSNP
rs1342297659 4648 dbSNP
rs1245682283 4659 dbSNP
rs1314258165 4666 dbSNP
rs1046167499 4668 dbSNP
rs1023246124 4672 dbSNP
rs549579598 4676 dbSNP
rs1002560698 4678 dbSNP
rs551716773 4681 dbSNP
rs1248297618 4682 dbSNP
rs1360001687 4685 dbSNP
rs893674737 4687 dbSNP
rs1010702092 4692 dbSNP
rs1440992218 4695 dbSNP
rs961781241 4695 dbSNP
rs1352434049 4715 dbSNP
rs972231841 4721 dbSNP
rs1020703813 4722 dbSNP
rs754132036 4723 dbSNP
rs1386333269 4728 dbSNP
rs1163498612 4731 dbSNP
rs952008940 4747 dbSNP
rs568613602 4767 dbSNP
rs1178180826 4770 dbSNP
rs1480404916 4771 dbSNP
rs1257862166 4773 dbSNP
rs985991479 4814 dbSNP
rs184353969 4828 dbSNP
rs987207839 4839 dbSNP
rs1019054147 4840 dbSNP
rs1291208648 4842 dbSNP
rs1242494080 4844 dbSNP
rs964389143 4847 dbSNP
rs554384240 4855 dbSNP
rs574559156 4856 dbSNP
rs1307397047 4861 dbSNP
rs1223024661 4873 dbSNP
rs1370653235 4875 dbSNP
rs1304588411 4881 dbSNP
rs1405248572 4883 dbSNP
rs765938138 4883 dbSNP
rs768239282 4883 dbSNP
rs1364391866 4884 dbSNP
rs975028398 4888 dbSNP
rs1456812817 4892 dbSNP
rs934757095 4900 dbSNP
rs1054987949 4904 dbSNP
rs920840816 4907 dbSNP
rs1418873847 4910 dbSNP
rs1409943224 4913 dbSNP
rs1201845274 4916 dbSNP
rs1490589745 4920 dbSNP
rs148138343 4921 dbSNP
rs554053798 4923 dbSNP
rs1486778835 4932 dbSNP
rs1261253818 4934 dbSNP
rs1214728417 4942 dbSNP
rs765761588 4943 dbSNP
rs950192608 4948 dbSNP
rs866294698 4950 dbSNP
rs905883357 4951 dbSNP
rs907429811 4953 dbSNP
rs937355778 4954 dbSNP
rs375300665 4959 dbSNP
rs1380687982 4965 dbSNP
rs1289968085 4966 dbSNP
rs1453757069 4979 dbSNP
rs893727116 4980 dbSNP
rs1437102571 4984 dbSNP
rs1010754204 4998 dbSNP
rs1386886167 4999 dbSNP
rs750859959 5000 dbSNP
rs1003127897 5002 dbSNP
rs1298277921 5004 dbSNP
rs1020756176 5008 dbSNP
rs532306850 5009 dbSNP
rs1430388187 5011 dbSNP
rs1257363762 5012 dbSNP
rs1262601051 5015 dbSNP
rs1204464884 5017 dbSNP
rs1463525985 5019 dbSNP
rs1264736711 5023 dbSNP
rs897516502 5038 dbSNP
rs546227145 5040 dbSNP
rs187669561 5043 dbSNP
rs1009085337 5044 dbSNP
rs1018691214 5045 dbSNP
rs1027840571 5048 dbSNP
rs1228883682 5053 dbSNP
rs964764719 5055 dbSNP
rs576034073 5063 dbSNP
rs1465888741 5069 dbSNP
rs149927111 5071 dbSNP
rs985904498 5071 dbSNP
rs1191006785 5072 dbSNP
rs1401686325 5079 dbSNP
rs1171033533 5085 dbSNP
rs1463776004 5086 dbSNP
rs1373693353 5088 dbSNP
rs1017396015 5089 dbSNP
rs1263112462 5090 dbSNP
rs1027286179 5101 dbSNP
rs769321742 5107 dbSNP
rs1460706115 5108 dbSNP
rs976440684 5111 dbSNP
rs1339709486 5112 dbSNP
rs1250227655 5113 dbSNP
rs1225574179 5114 dbSNP
rs75818220 5115 dbSNP
rs934682635 5122 dbSNP
rs1379580423 5128 dbSNP
rs983676024 5143 dbSNP
rs908065530 5144 dbSNP
rs950228014 5148 dbSNP
rs1393327579 5152 dbSNP
rs948799995 5163 dbSNP
rs981972817 5164 dbSNP
rs562175435 5167 dbSNP
rs527908058 5173 dbSNP
rs1427918863 5189 dbSNP
rs747901467 5196 dbSNP
rs541232168 5197 dbSNP
rs1443993771 5198 dbSNP
rs564812301 5202 dbSNP
rs1289352568 5212 dbSNP
rs914544906 5213 dbSNP
rs946663100 5216 dbSNP
rs541122312 5217 dbSNP
rs1303064174 5235 dbSNP
rs897468775 5237 dbSNP
rs1490697037 5239 dbSNP
rs1291949634 5241 dbSNP
rs755690602 5258 dbSNP
rs1331478361 5268 dbSNP
rs533413819 5271 dbSNP
rs72825851 5272 dbSNP
rs1008721343 5281 dbSNP
rs1040579238 5284 dbSNP
rs542849021 5290 dbSNP
rs1330580431 5291 dbSNP
rs1307660855 5293 dbSNP
rs193243878 5294 dbSNP
rs1027338507 5296 dbSNP
rs887491823 5297 dbSNP
rs1007273599 5310 dbSNP
rs1303885027 5314 dbSNP
rs1404658579 5315 dbSNP
rs185687028 5320 dbSNP
rs1485862625 5323 dbSNP
rs547858850 5327 dbSNP
rs965891689 5329 dbSNP
rs116365132 5332 dbSNP
rs1480985227 5345 dbSNP
rs534004537 5362 dbSNP
rs1179557172 5364 dbSNP
rs115072522 5365 dbSNP
rs955997696 5369 dbSNP
rs11191994 5374 dbSNP
rs972007671 5375 dbSNP
rs1451486468 5380 dbSNP
rs1288360521 5391 dbSNP
rs1207195370 5394 dbSNP
rs1351844886 5400 dbSNP
rs981635349 5404 dbSNP
rs377462287 5418 dbSNP
rs1160008286 5420 dbSNP
rs1347656373 5426 dbSNP
rs1283951100 5445 dbSNP
rs958793877 5453 dbSNP
rs1347980228 5454 dbSNP
rs1451455397 5456 dbSNP
rs1320206821 5457 dbSNP
rs1401277444 5459 dbSNP
rs1295253824 5460 dbSNP
rs561567996 5461 dbSNP
rs990180040 5462 dbSNP
rs914595815 5481 dbSNP
rs970095027 5484 dbSNP
rs1365913426 5486 dbSNP
rs980217045 5491 dbSNP
rs576486177 5503 dbSNP
rs1404162591 5504 dbSNP
rs946046331 5511 dbSNP
rs77617415 5519 dbSNP
rs1465784382 5523 dbSNP
rs1280941597 5524 dbSNP
rs1207250271 5542 dbSNP
rs1042729749 5544 dbSNP
rs528686213 5547 dbSNP
rs923886238 5555 dbSNP
rs928785403 5559 dbSNP
rs944583432 5560 dbSNP
rs369701569 5561 dbSNP
rs555845828 5562 dbSNP
rs1272052648 5565 dbSNP
rs1431353109 5567 dbSNP
rs572409575 5570 dbSNP
rs1314613659 5574 dbSNP
rs918804146 5576 dbSNP
rs779007766 5580 dbSNP
rs1388653717 5582 dbSNP
rs752974889 5585 dbSNP
rs931587223 5591 dbSNP
rs995955991 5600 dbSNP
rs1174909573 5606 dbSNP
rs1412458968 5614 dbSNP
rs796394565 5622 dbSNP
rs1168031289 5628 dbSNP
rs1048824544 5631 dbSNP
rs1049173195 5639 dbSNP
rs1186992465 5640 dbSNP
rs1462932274 5646 dbSNP
rs1490608393 5664 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgguucccUUACCGUCCCUUUa 5'
                  |||   :|||||| 
Target 5' -------aAAU---GGGGAAAa 3'
1 - 12
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000369707.2 | 3UTR | AAAUGGGGAAAAGGCCUUGAAGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
223 hsa-miR-4446-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT078060 PCTP phosphatidylcholine transfer protein 2 2
MIRT099072 FOXC1 forkhead box C1 2 2
MIRT130186 TXNIP thioredoxin interacting protein 2 2
MIRT148786 NARS asparaginyl-tRNA synthetase 2 2
MIRT261965 SEPHS1 selenophosphate synthetase 1 2 2
MIRT345867 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT409087 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT451883 SOD2 superoxide dismutase 2 2 4
MIRT469236 RHOB ras homolog family member B 2 2
MIRT469435 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT483055 FOXB1 forkhead box B1 2 8
MIRT484640 TBC1D5 TBC1 domain family member 5 2 6
MIRT493106 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT497307 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 2 2
MIRT497798 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT501273 SCARB2 scavenger receptor class B member 2 2 4
MIRT506756 KMT2D lysine methyltransferase 2D 2 2
MIRT511986 EEF2 eukaryotic translation elongation factor 2 2 4
MIRT513126 ZNF431 zinc finger protein 431 2 2
MIRT519733 ZNF394 zinc finger protein 394 2 4
MIRT520351 UBE2K ubiquitin conjugating enzyme E2 K 2 4
MIRT520542 TPPP tubulin polymerization promoting protein 2 8
MIRT530782 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 2
MIRT531112 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT532144 GALNT8 polypeptide N-acetylgalactosaminyltransferase 8 2 2
MIRT533208 WAPAL WAPL cohesin release factor 2 2
MIRT533419 TWF1 twinfilin actin binding protein 1 2 2
MIRT534063 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT534288 SLAIN2 SLAIN motif family member 2 2 2
MIRT537796 EFNB2 ephrin B2 2 2
MIRT538017 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT538058 DMD dystrophin 2 2
MIRT538132 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT538680 CCDC80 coiled-coil domain containing 80 2 2
MIRT538788 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT542762 PPAP2B phospholipid phosphatase 3 2 2
MIRT546861 RAB10 RAB10, member RAS oncogene family 2 4
MIRT547418 MED4 mediator complex subunit 4 2 4
MIRT551633 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT552329 ZNF704 zinc finger protein 704 2 2
MIRT556124 MFSD9 major facilitator superfamily domain containing 9 2 4
MIRT559290 ATXN1 ataxin 1 2 2
MIRT562125 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563777 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 2 2
MIRT564430 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT566102 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT567126 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 2
MIRT571213 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT571939 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT571967 KIF21A kinesin family member 21A 2 2
MIRT606792 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 8
MIRT607351 TNS1 tensin 1 2 4
MIRT609416 GJB7 gap junction protein beta 7 2 4
MIRT609522 AZI2 5-azacytidine induced 2 2 4
MIRT611218 FAM174B family with sequence similarity 174 member B 2 2
MIRT611385 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT612053 KLB klotho beta 2 4
MIRT612102 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT612146 SIX1 SIX homeobox 1 2 4
MIRT612488 SIX3 SIX homeobox 3 2 4
MIRT613685 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613763 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT613876 FGD1 FYVE, RhoGEF and PH domain containing 1 2 2
MIRT613965 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 4
MIRT614894 PAPOLG poly(A) polymerase gamma 2 2
MIRT614912 NFIA nuclear factor I A 2 2
MIRT615013 ERGIC2 ERGIC and golgi 2 2 2
MIRT615106 BCL7A BCL tumor suppressor 7A 2 2
MIRT615242 FAM227A family with sequence similarity 227 member A 2 4
MIRT615695 NEGR1 neuronal growth regulator 1 2 2
MIRT615956 ERBB3 erb-b2 receptor tyrosine kinase 3 2 4
MIRT615979 FSTL4 follistatin like 4 2 2
MIRT616053 PTPRE protein tyrosine phosphatase, receptor type E 2 4
MIRT616073 TBX2 T-box 2 2 4
MIRT616234 NPAS3 neuronal PAS domain protein 3 2 2
MIRT616306 CELF2 CUGBP Elav-like family member 2 2 2
MIRT616474 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT616662 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT616887 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 2 2
MIRT616902 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT617025 SYT6 synaptotagmin 6 2 2
MIRT617162 SLC16A5 solute carrier family 16 member 5 2 2
MIRT617318 DPF3 double PHD fingers 3 2 2
MIRT617792 CHRM2 cholinergic receptor muscarinic 2 2 2
MIRT618418 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 2 2
MIRT618663 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT620212 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620413 TFDP3 transcription factor Dp family member 3 2 2
MIRT620667 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620709 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT620956 SFT2D2 SFT2 domain containing 2 2 2
MIRT621225 LMAN1 lectin, mannose binding 1 2 2
MIRT621333 SLC11A1 solute carrier family 11 member 1 2 2
MIRT621696 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT623484 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623777 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT624215 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT624675 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT627369 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT628252 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT630790 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT635631 PRR15L proline rich 15 like 2 2
MIRT636425 MARCH1 membrane associated ring-CH-type finger 1 2 2
MIRT637295 ACTN2 actinin alpha 2 2 2
MIRT637345 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT637842 SLC2A9 solute carrier family 2 member 9 2 2
MIRT638327 RCAN1 regulator of calcineurin 1 2 2
MIRT638375 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638751 EPHA4 EPH receptor A4 2 2
MIRT638965 ARHGAP6 Rho GTPase activating protein 6 2 2
MIRT639094 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT639172 CEP70 centrosomal protein 70 2 2
MIRT639254 SLC38A1 solute carrier family 38 member 1 2 4
MIRT639368 ZCCHC24 zinc finger CCHC-type containing 24 2 4
MIRT639504 CACNA1G calcium voltage-gated channel subunit alpha1 G 2 2
MIRT639644 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT640486 EXOC5 exocyst complex component 5 2 2
MIRT641424 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT641550 LIPG lipase G, endothelial type 2 2
MIRT642180 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT642656 RGS6 regulator of G protein signaling 6 2 2
MIRT642873 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT643355 TRIM10 tripartite motif containing 10 2 2
MIRT643531 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT643998 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644105 PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 2 2
MIRT644421 VDR vitamin D receptor 2 2
MIRT644481 SLFN12 schlafen family member 12 2 2
MIRT644573 SPOP speckle type BTB/POZ protein 2 2
MIRT645354 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT645383 FBLIM1 filamin binding LIM protein 1 2 2
MIRT645758 SURF6 surfeit 6 2 2
MIRT646060 VANGL2 VANGL planar cell polarity protein 2 2 2
MIRT646194 DUSP10 dual specificity phosphatase 10 2 2
MIRT647915 RGS5 regulator of G protein signaling 5 2 2
MIRT649216 AMMECR1L AMMECR1 like 2 2
MIRT649265 C17orf64 chromosome 17 open reading frame 64 2 2
MIRT649522 GTF3C3 general transcription factor IIIC subunit 3 2 2
MIRT649605 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650392 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT650835 SEMA4G semaphorin 4G 2 2
MIRT651273 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT651674 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT651763 VASP vasodilator stimulated phosphoprotein 2 2
MIRT652250 TPD52L3 tumor protein D52 like 3 2 2
MIRT652277 TOM1L2 target of myb1 like 2 membrane trafficking protein 2 2
MIRT652316 TNFSF15 TNF superfamily member 15 2 2
MIRT652342 TMOD3 tropomodulin 3 2 2
MIRT652373 TMEM57 transmembrane protein 57 2 2
MIRT652438 TMEM236 transmembrane protein 236 2 2
MIRT652723 TGFB2 transforming growth factor beta 2 2 2
MIRT652752 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653310 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT653327 SMIM18 small integral membrane protein 18 2 2
MIRT653406 SLC7A2 solute carrier family 7 member 2 2 2
MIRT653512 SLC41A1 solute carrier family 41 member 1 2 2
MIRT653912 SERPINC1 serpin family C member 1 2 2
MIRT654111 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654153 RORB RAR related orphan receptor B 2 2
MIRT654548 RAB14 RAB14, member RAS oncogene family 2 2
MIRT654920 POLR3D RNA polymerase III subunit D 2 2
MIRT655169 PHF19 PHD finger protein 19 2 2
MIRT655412 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT655784 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT655836 NGDN neuroguidin 2 2
MIRT656079 MTA3 metastasis associated 1 family member 3 2 2
MIRT656404 MCTP1 multiple C2 and transmembrane domain containing 1 2 2
MIRT656720 LMLN leishmanolysin like peptidase 2 2
MIRT656774 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT656922 KIAA1462 junctional cadherin 5 associated 2 2
MIRT657004 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT657477 HCAR2 hydroxycarboxylic acid receptor 2 2 2
MIRT657539 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657911 GCC1 GRIP and coiled-coil domain containing 1 2 2
MIRT658478 EXOC8 exocyst complex component 8 2 2
MIRT658612 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT658823 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT658965 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT659706 CCDC93 coiled-coil domain containing 93 2 2
MIRT660034 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT660108 BTBD3 BTB domain containing 3 2 2
MIRT660697 AMOTL2 angiomotin like 2 2 2
MIRT660763 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660884 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT660956 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661217 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT661596 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661624 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662430 EID2 EP300 interacting inhibitor of differentiation 2 2 2
MIRT664816 NOX5 NADPH oxidase 5 2 2
MIRT665548 UCHL5 ubiquitin C-terminal hydrolase L5 2 2
MIRT665815 TMEM161B transmembrane protein 161B 2 2
MIRT666668 RBM23 RNA binding motif protein 23 2 2
MIRT667995 HCFC2 host cell factor C2 2 2
MIRT668064 GPR180 G protein-coupled receptor 180 2 2
MIRT669056 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT669637 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT699368 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699882 RUNX1 runt related transcription factor 1 2 2
MIRT703834 ETV3 ETS variant 3 2 2
MIRT708528 ZNF177 zinc finger protein 177 2 2
MIRT709696 DMWD DM1 locus, WD repeat containing 2 2
MIRT710381 PARD6G par-6 family cell polarity regulator gamma 2 2
MIRT710639 GLUL glutamate-ammonia ligase 2 2
MIRT711584 SETD1A SET domain containing 1A 2 2
MIRT713208 FAM13A family with sequence similarity 13 member A 2 2
MIRT714129 IL20RB interleukin 20 receptor subunit beta 2 2
MIRT714204 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT714733 CCNO cyclin O 2 2
MIRT714761 ZNF462 zinc finger protein 462 2 2
MIRT715624 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715755 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT716075 RNF150 ring finger protein 150 2 2
MIRT716179 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT717450 RWDD2A RWD domain containing 2A 2 2
MIRT717866 CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 2 2
MIRT720964 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT721564 SLC5A12 solute carrier family 5 member 12 2 2
MIRT722348 BAG2 BCL2 associated athanogene 2 2 2
MIRT723235 BTLA B and T lymphocyte associated 2 2
MIRT724018 LMBRD2 LMBR1 domain containing 2 2 2
MIRT724507 KLHL5 kelch like family member 5 2 2
MIRT725478 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4446 Aed Therapy sensitive High Epilepsy tissue
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-4446 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-4446 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-4446 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-4446-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4446-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4446-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4446-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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