pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GMEB1   
Synonyms P96PIF, PIF96
Description glucocorticoid modulatory element binding protein 1
Transcript NM_006582   
Other Transcripts NM_024482   
Expression
Putative miRNA Targets on GMEB1
3'UTR of GMEB1
(miRNA target sites are highlighted)
>GMEB1|NM_006582|3'UTR
   1 CTGGGGATCTCAGGGCCAGGAGTTATGTTTTGATTTGGAATTTTAATTATTTGTTTATTTTTATCATTGTCCCACTCATT
  81 TCCACATAGGACCCTTTTTTAAAAAAAAAAAAACAAAATCTTATTGTTGTAACTGAAAATGTTGGGTTCTTCCCACTCCC
 161 TCATTGAAAAATGGACAAAACAAGCTGCCCTTCCAGAAGTTGAGAGTAGGTCATTCAATGTCCTAATCATCTTACACCAA
 241 GAAAGTAATTTCTTTTAGGGGAAGTGTCAAGATAACAAGTAACCCTGTCCAGAAAGCCATTTCCAGGCTCGTCTGTGTGT
 321 GTAGGCATGTGGTTTTATTCTTGTAAAGATGCATTGACCAAACTCTGGAACACAGATCTGACACTGGAAGGCAACCCACT
 401 CGCATGTGGATGCTGAAGGGCACTTTATTTTGTATCCTGAAAAGGGCCTACAGAGGCCAGTACAAAACTCTCAAACAAAA
 481 GGAAGTTGACTCTGCTTTGAGGGGAAGGTGGCATGCCAGCACTAGCTTAAAAAGGGAAGTGCTAGCCGGGCGTGGTGGCT
 561 CACGCCTGCAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACA
 641 TGGTGAAACCCCGTATCTACTAAAAATACGAAAAAAAAATTAGCCGGGTGTGGTGGCGGGAGCCTGTAATCCCAGCTATT
 721 CAGGAGGCCAAGGCAGGAGAATCGCTTGAACCTGGGAAGGCAGAGGTTGCAGTGAGCCAAGATCGCACCACTGCACTCCA
 801 GCCTGGGCAACAAGAGCGAGACTCCATCTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCGUUCUGGGGC--AGA-GAUUu 5'
            :|::| ||||||  ||| |||| 
Target 5' atGGTGAAACCCCGTATCTACTAAa 3'
640 - 664 138.00 -15.70
2
miRNA  3' ucucGUUCUGGGGCAGAGAUUu 5'
              :|:|||||: |:|:||| 
Target 5' cacaTAGGACCCT-TTTTTAAa 3'
83 - 103 133.00 -16.00
3
miRNA  3' ucUCGUUCUGGGGCAGAGauuu 5'
            |||:||||:|| ||||    
Target 5' agAGCGAGACTCCATCTC---- 3'
813 - 830 124.00 -24.66
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26977568 21 COSMIC
COSN30494952 24 COSMIC
COSN31487522 66 COSMIC
COSN19652673 75 COSMIC
COSN31588347 90 COSMIC
COSN30119706 96 COSMIC
COSN15659541 101 COSMIC
COSN31518380 101 COSMIC
COSN18725958 102 COSMIC
COSN31530964 103 COSMIC
COSN15657506 112 COSMIC
COSN15657405 114 COSMIC
COSN27197780 114 COSMIC
COSN23014309 228 COSMIC
COSN1442623 428 COSMIC
COSN32061775 851 COSMIC
COSN25798104 968 COSMIC
COSN6033161 1047 COSMIC
COSN6452187 1321 COSMIC
COSN27377484 1980 COSMIC
COSN16337470 2069 COSMIC
COSN27380929 2265 COSMIC
COSN31650652 2672 COSMIC
COSN4902158 2684 COSMIC
COSN22040989 3686 COSMIC
COSN10046845 3724 COSMIC
COSN7470131 3871 COSMIC
COSN8455893 3932 COSMIC
COSN29146567 4374 COSMIC
COSN21485473 4485 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1484906836 2 dbSNP
rs781360608 3 dbSNP
rs1312662404 6 dbSNP
rs748224487 7 dbSNP
rs1479016791 10 dbSNP
rs16837669 19 dbSNP
rs1429019686 22 dbSNP
rs774124236 23 dbSNP
rs746275735 26 dbSNP
rs745721067 27 dbSNP
rs1460081336 28 dbSNP
rs771711337 38 dbSNP
rs1342946875 42 dbSNP
rs570437550 48 dbSNP
rs775152143 49 dbSNP
rs758917680 50 dbSNP
rs760251096 50 dbSNP
rs1258101527 62 dbSNP
rs539315668 64 dbSNP
rs574201988 71 dbSNP
rs979846386 72 dbSNP
rs1242925509 79 dbSNP
rs1207544796 86 dbSNP
rs1236149208 90 dbSNP
rs181521135 95 dbSNP
rs35942724 95 dbSNP
rs955963601 95 dbSNP
rs1182747141 100 dbSNP
rs372271712 101 dbSNP
rs559808019 101 dbSNP
rs912038667 101 dbSNP
rs528044464 102 dbSNP
rs1471872848 109 dbSNP
rs550986155 111 dbSNP
rs186305930 112 dbSNP
rs530505140 113 dbSNP
rs1258162969 114 dbSNP
rs550286736 114 dbSNP
rs897073583 115 dbSNP
rs1201227379 116 dbSNP
rs1174209036 121 dbSNP
rs1443477792 124 dbSNP
rs929923694 125 dbSNP
rs1048299945 126 dbSNP
rs920820125 130 dbSNP
rs1475215879 135 dbSNP
rs1466367712 156 dbSNP
rs1426044493 157 dbSNP
rs1479528353 170 dbSNP
rs1304332593 178 dbSNP
rs1175769572 181 dbSNP
rs1401455826 195 dbSNP
rs879032511 201 dbSNP
rs1409108526 207 dbSNP
rs12117693 208 dbSNP
rs1343160401 210 dbSNP
rs751126100 211 dbSNP
rs536098145 212 dbSNP
rs886467034 213 dbSNP
rs1277491120 219 dbSNP
rs900551794 220 dbSNP
rs1273701801 229 dbSNP
rs1312343303 232 dbSNP
rs754603263 234 dbSNP
rs1221377817 237 dbSNP
rs1030786240 239 dbSNP
rs1282602828 253 dbSNP
rs1488206489 260 dbSNP
rs956056577 261 dbSNP
rs1265673632 274 dbSNP
rs1056588063 277 dbSNP
rs1198825845 278 dbSNP
rs1010936232 289 dbSNP
rs777619908 296 dbSNP
rs1378227371 305 dbSNP
rs1021815350 311 dbSNP
rs1282887997 312 dbSNP
rs1298563095 314 dbSNP
rs895229973 314 dbSNP
rs768811793 316 dbSNP
rs1182084706 324 dbSNP
rs968879537 325 dbSNP
rs780861441 328 dbSNP
rs980212821 338 dbSNP
rs1331108299 345 dbSNP
rs904427123 354 dbSNP
rs1471210136 358 dbSNP
rs1353589008 364 dbSNP
rs1000137848 366 dbSNP
rs1481649772 369 dbSNP
rs752445547 374 dbSNP
rs1031749349 379 dbSNP
rs1424768102 381 dbSNP
rs546832307 385 dbSNP
rs927053520 390 dbSNP
rs955765576 391 dbSNP
rs755880312 392 dbSNP
rs777706121 394 dbSNP
rs1018655214 396 dbSNP
rs1438977567 397 dbSNP
rs140565035 401 dbSNP
rs992589404 402 dbSNP
rs1308543586 405 dbSNP
rs1372268830 407 dbSNP
rs1433679635 408 dbSNP
rs1162349606 415 dbSNP
rs1390981922 419 dbSNP
rs1273688046 422 dbSNP
rs1326242987 433 dbSNP
rs1376850320 435 dbSNP
rs1448101641 436 dbSNP
rs1311939163 437 dbSNP
rs1380954701 438 dbSNP
rs35225835 444 dbSNP
rs1367892440 458 dbSNP
rs918282660 462 dbSNP
rs1244513687 468 dbSNP
rs1266320021 468 dbSNP
rs566655741 473 dbSNP
rs974850411 481 dbSNP
rs1300110773 485 dbSNP
rs373591683 493 dbSNP
rs1048359706 504 dbSNP
rs1257464566 505 dbSNP
rs1220567822 514 dbSNP
rs920793869 515 dbSNP
rs1306179664 523 dbSNP
rs1340465372 535 dbSNP
rs558170124 536 dbSNP
rs1239928353 537 dbSNP
rs1421892651 538 dbSNP
rs952282771 547 dbSNP
rs909772160 548 dbSNP
rs578092272 549 dbSNP
rs1056871648 551 dbSNP
rs779154268 552 dbSNP
rs901001558 560 dbSNP
rs998041421 564 dbSNP
rs1219498108 565 dbSNP
rs1051842200 570 dbSNP
rs1395864867 572 dbSNP
rs537539726 576 dbSNP
rs748545984 577 dbSNP
rs1342522271 579 dbSNP
rs1225458090 581 dbSNP
rs1010215905 582 dbSNP
rs1488951384 583 dbSNP
rs1318775752 584 dbSNP
rs557214863 586 dbSNP
rs1200585942 587 dbSNP
rs1195723347 590 dbSNP
rs948132311 592 dbSNP
rs1448658562 597 dbSNP
rs1256532821 598 dbSNP
rs1044232887 603 dbSNP
rs1172165872 608 dbSNP
rs1421604029 608 dbSNP
rs536552253 609 dbSNP
rs542859104 613 dbSNP
rs1322352234 618 dbSNP
rs1303818166 626 dbSNP
rs1404732884 627 dbSNP
rs1349956323 628 dbSNP
rs1380879786 632 dbSNP
rs1297879587 636 dbSNP
rs1000511847 644 dbSNP
rs1220582824 653 dbSNP
rs559971430 654 dbSNP
rs1053006253 656 dbSNP
rs1318142918 658 dbSNP
rs968910746 667 dbSNP
rs573475879 670 dbSNP
rs1363930906 671 dbSNP
rs35312015 671 dbSNP
rs1488397798 673 dbSNP
rs1008538075 676 dbSNP
rs545326798 677 dbSNP
rs1433131267 678 dbSNP
rs575037579 678 dbSNP
rs1342149452 679 dbSNP
rs1379862388 681 dbSNP
rs564515026 686 dbSNP
rs530467573 687 dbSNP
rs1361446195 691 dbSNP
rs1289325759 694 dbSNP
rs1366914331 698 dbSNP
rs964414413 699 dbSNP
rs995908804 706 dbSNP
rs1237742418 716 dbSNP
rs952250102 722 dbSNP
rs984033722 728 dbSNP
rs908081072 735 dbSNP
rs1244484530 736 dbSNP
rs1246427107 744 dbSNP
rs960228056 745 dbSNP
rs1464581493 748 dbSNP
rs961267296 763 dbSNP
rs1188996884 785 dbSNP
rs1163028123 786 dbSNP
rs1243609526 786 dbSNP
rs373041701 795 dbSNP
rs1349504760 803 dbSNP
rs1162575174 809 dbSNP
rs1295331944 812 dbSNP
rs1414365222 817 dbSNP
rs1462567451 818 dbSNP
rs1156270829 819 dbSNP
rs1444423215 830 dbSNP
rs1191912990 831 dbSNP
rs1266644925 831 dbSNP
rs1320704625 831 dbSNP
rs1377282454 831 dbSNP
rs536160225 831 dbSNP
rs992143437 831 dbSNP
rs1387486423 832 dbSNP
rs1435338886 833 dbSNP
rs1321689828 841 dbSNP
rs1178493519 845 dbSNP
rs1239313872 848 dbSNP
rs1328558159 848 dbSNP
rs993016228 851 dbSNP
rs958177913 853 dbSNP
rs916608107 855 dbSNP
rs1180459057 858 dbSNP
rs1413394431 862 dbSNP
rs918317957 863 dbSNP
rs948114527 865 dbSNP
rs550249681 866 dbSNP
rs1235249101 871 dbSNP
rs951132412 872 dbSNP
rs1330675194 873 dbSNP
rs1400912696 883 dbSNP
rs983753189 884 dbSNP
rs760303203 888 dbSNP
rs1328804956 903 dbSNP
rs1378014236 907 dbSNP
rs1228479093 908 dbSNP
rs925365597 911 dbSNP
rs1315598639 915 dbSNP
rs935807667 918 dbSNP
rs560749989 920 dbSNP
rs1209593997 925 dbSNP
rs942631284 932 dbSNP
rs112393677 934 dbSNP
rs922455376 936 dbSNP
rs371375390 937 dbSNP
rs1459460437 951 dbSNP
rs1208505593 954 dbSNP
rs878908087 956 dbSNP
rs560829465 959 dbSNP
rs529849663 960 dbSNP
rs1238017717 970 dbSNP
rs1237217855 977 dbSNP
rs1473259018 978 dbSNP
rs1476121478 987 dbSNP
rs1179455351 1003 dbSNP
rs1421755821 1007 dbSNP
rs1052301719 1009 dbSNP
rs1171433840 1020 dbSNP
rs1424280629 1039 dbSNP
rs1053379362 1041 dbSNP
rs190411529 1042 dbSNP
rs566723511 1047 dbSNP
rs1448472191 1048 dbSNP
rs368259352 1055 dbSNP
rs1337933600 1059 dbSNP
rs181600347 1068 dbSNP
rs552552902 1085 dbSNP
rs367960731 1086 dbSNP
rs185923934 1089 dbSNP
rs557382301 1091 dbSNP
rs1278372993 1097 dbSNP
rs1443423447 1098 dbSNP
rs900217766 1100 dbSNP
rs995876305 1107 dbSNP
rs1488062276 1114 dbSNP
rs1194501573 1118 dbSNP
rs1476354137 1136 dbSNP
rs1027328379 1137 dbSNP
rs1286574068 1138 dbSNP
rs147569881 1141 dbSNP
rs759266185 1146 dbSNP
rs1005028434 1147 dbSNP
rs1015521994 1148 dbSNP
rs1262719381 1149 dbSNP
rs1298291220 1157 dbSNP
rs1327612955 1162 dbSNP
rs1343087596 1163 dbSNP
rs1274839472 1165 dbSNP
rs796353375 1165 dbSNP
rs960975864 1165 dbSNP
rs1217534693 1176 dbSNP
rs75760568 1177 dbSNP
rs61787562 1179 dbSNP
rs1449996818 1180 dbSNP
rs1199689551 1181 dbSNP
rs1023632070 1184 dbSNP
rs1279045015 1185 dbSNP
rs1014394610 1197 dbSNP
rs536823232 1198 dbSNP
rs951124114 1199 dbSNP
rs1158949555 1200 dbSNP
rs983866043 1204 dbSNP
rs553277110 1214 dbSNP
rs963692430 1221 dbSNP
rs573174408 1225 dbSNP
rs1332196789 1237 dbSNP
rs922522813 1240 dbSNP
rs1375602809 1241 dbSNP
rs1307535999 1245 dbSNP
rs191087928 1247 dbSNP
rs1376711988 1249 dbSNP
rs1477463335 1251 dbSNP
rs979429540 1254 dbSNP
rs933833672 1258 dbSNP
rs1209350891 1259 dbSNP
rs1290621989 1262 dbSNP
rs925332300 1286 dbSNP
rs545471536 1291 dbSNP
rs987960064 1293 dbSNP
rs913312841 1305 dbSNP
rs545291483 1306 dbSNP
rs1306734896 1318 dbSNP
rs1370415234 1320 dbSNP
rs77208577 1321 dbSNP
rs1040304725 1325 dbSNP
rs1390739213 1325 dbSNP
rs1462555751 1325 dbSNP
rs199862681 1325 dbSNP
rs900437934 1331 dbSNP
rs1448034155 1333 dbSNP
rs1329621377 1336 dbSNP
rs767696682 1337 dbSNP
rs1338948753 1340 dbSNP
rs1244265005 1346 dbSNP
rs1284860949 1351 dbSNP
rs931610810 1363 dbSNP
rs1216863912 1367 dbSNP
rs1048733843 1370 dbSNP
rs1256137964 1375 dbSNP
rs887507202 1381 dbSNP
rs574852215 1382 dbSNP
rs1005069982 1383 dbSNP
rs1196179635 1385 dbSNP
rs1015089773 1391 dbSNP
rs1440340696 1396 dbSNP
rs1186480613 1421 dbSNP
rs904562707 1425 dbSNP
rs1275295044 1427 dbSNP
rs1167880613 1428 dbSNP
rs1423581893 1434 dbSNP
rs937325411 1438 dbSNP
rs1300280150 1441 dbSNP
rs1056462809 1444 dbSNP
rs1349762973 1459 dbSNP
rs772396023 1479 dbSNP
rs1225826618 1481 dbSNP
rs1273829032 1483 dbSNP
rs1335175763 1490 dbSNP
rs750306078 1491 dbSNP
rs1014839724 1493 dbSNP
rs1025848300 1494 dbSNP
rs1317232485 1495 dbSNP
rs1227979189 1501 dbSNP
rs376133162 1503 dbSNP
rs887262756 1503 dbSNP
rs1450722340 1504 dbSNP
rs1005333097 1507 dbSNP
rs1199640792 1509 dbSNP
rs1016673465 1516 dbSNP
rs543807705 1517 dbSNP
rs1261763017 1520 dbSNP
rs963726471 1521 dbSNP
rs1429635935 1523 dbSNP
rs979396610 1528 dbSNP
rs1032370996 1529 dbSNP
rs775887892 1533 dbSNP
rs1377538800 1539 dbSNP
rs988672451 1553 dbSNP
rs1297659144 1561 dbSNP
rs1341276555 1564 dbSNP
rs1455859829 1567 dbSNP
rs1030002890 1568 dbSNP
rs1390127494 1569 dbSNP
rs1297697117 1575 dbSNP
rs1329242968 1578 dbSNP
rs955281040 1581 dbSNP
rs1449755697 1599 dbSNP
rs1232299658 1600 dbSNP
rs1280717337 1612 dbSNP
rs944506548 1617 dbSNP
rs975893483 1620 dbSNP
rs1213921729 1622 dbSNP
rs1372823356 1623 dbSNP
rs145253788 1623 dbSNP
rs988462066 1627 dbSNP
rs1300014293 1632 dbSNP
rs1284864584 1641 dbSNP
rs913769829 1643 dbSNP
rs1388667025 1653 dbSNP
rs1485943027 1657 dbSNP
rs946540493 1658 dbSNP
rs931913380 1659 dbSNP
rs1326840346 1668 dbSNP
rs1433077101 1668 dbSNP
rs1373381784 1671 dbSNP
rs1048700090 1674 dbSNP
rs561010259 1682 dbSNP
rs761072371 1693 dbSNP
rs1225938268 1696 dbSNP
rs926008908 1701 dbSNP
rs768917304 1702 dbSNP
rs1036486662 1705 dbSNP
rs1229477762 1707 dbSNP
rs529766790 1708 dbSNP
rs35419322 1711 dbSNP
rs12561973 1719 dbSNP
rs1291818370 1724 dbSNP
rs1055759112 1728 dbSNP
rs917236363 1737 dbSNP
rs1169280908 1743 dbSNP
rs1209844571 1745 dbSNP
rs1237673504 1748 dbSNP
rs1045268825 1754 dbSNP
rs905429371 1756 dbSNP
rs1317110984 1757 dbSNP
rs1001139901 1758 dbSNP
rs577900562 1761 dbSNP
rs956958489 1762 dbSNP
rs762783466 1766 dbSNP
rs1429701002 1773 dbSNP
rs887295363 1773 dbSNP
rs1255424238 1782 dbSNP
rs1438279002 1785 dbSNP
rs1178377085 1787 dbSNP
rs1005699038 1789 dbSNP
rs1038140632 1796 dbSNP
rs1421055195 1808 dbSNP
rs1162786379 1809 dbSNP
rs1020078954 1813 dbSNP
rs965452679 1815 dbSNP
rs975859411 1827 dbSNP
rs1367171506 1834 dbSNP
rs1457470957 1836 dbSNP
rs1396570376 1837 dbSNP
rs377116246 1846 dbSNP
rs560088033 1851 dbSNP
rs1444359100 1858 dbSNP
rs899551086 1867 dbSNP
rs1373640672 1869 dbSNP
rs953279242 1874 dbSNP
rs996922271 1879 dbSNP
rs1310125945 1881 dbSNP
rs1320649850 1884 dbSNP
rs1233337122 1885 dbSNP
rs1396984110 1892 dbSNP
rs141946704 1896 dbSNP
rs1275641532 1898 dbSNP
rs1456792628 1913 dbSNP
rs1433139668 1930 dbSNP
rs984705637 1940 dbSNP
rs909138213 1958 dbSNP
rs1180407444 1965 dbSNP
rs1319686734 1965 dbSNP
rs1475605993 1966 dbSNP
rs1029372095 1967 dbSNP
rs1354394022 1969 dbSNP
rs1491295101 1969 dbSNP
rs552459549 1969 dbSNP
rs56214028 1969 dbSNP
rs796265252 1969 dbSNP
rs796863149 1969 dbSNP
rs1294539439 1970 dbSNP
rs1491515386 1970 dbSNP
rs569178921 1971 dbSNP
rs1021273874 1972 dbSNP
rs1190183491 1973 dbSNP
rs967874787 1973 dbSNP
rs1261053865 1975 dbSNP
rs1310492777 1976 dbSNP
rs979199910 1977 dbSNP
rs530900574 1978 dbSNP
rs958821061 1979 dbSNP
rs1374496278 1980 dbSNP
rs1434888713 1980 dbSNP
rs763974820 1981 dbSNP
rs991975406 1982 dbSNP
rs914293839 1983 dbSNP
rs950072774 1988 dbSNP
rs1364662037 1999 dbSNP
rs1019626233 2005 dbSNP
rs1047327275 2010 dbSNP
rs1280003447 2016 dbSNP
rs751526679 2040 dbSNP
rs1213211218 2047 dbSNP
rs1284126212 2051 dbSNP
rs1488030246 2057 dbSNP
rs143101384 2064 dbSNP
rs908766293 2090 dbSNP
rs1188580934 2094 dbSNP
rs1476322508 2096 dbSNP
rs941519043 2097 dbSNP
rs1394179378 2098 dbSNP
rs148219207 2116 dbSNP
rs1028781516 2117 dbSNP
rs900001896 2125 dbSNP
rs1318364581 2128 dbSNP
rs1347489445 2129 dbSNP
rs114811458 2133 dbSNP
rs1051274839 2140 dbSNP
rs890821517 2141 dbSNP
rs1158688983 2148 dbSNP
rs1345942864 2157 dbSNP
rs1307393853 2158 dbSNP
rs1205813371 2168 dbSNP
rs1286359969 2186 dbSNP
rs909099102 2189 dbSNP
rs1211805411 2204 dbSNP
rs1252292996 2205 dbSNP
rs140146007 2213 dbSNP
rs1195240734 2215 dbSNP
rs1300815946 2218 dbSNP
rs777622271 2220 dbSNP
rs183277911 2224 dbSNP
rs1415293994 2230 dbSNP
rs1294668356 2238 dbSNP
rs1409457352 2244 dbSNP
rs1403079410 2246 dbSNP
rs1325878079 2250 dbSNP
rs1299632784 2253 dbSNP
rs1395833383 2253 dbSNP
rs917612308 2254 dbSNP
rs972125455 2254 dbSNP
rs949111946 2255 dbSNP
rs1348076836 2256 dbSNP
rs765819941 2266 dbSNP
rs563475435 2273 dbSNP
rs1272522414 2278 dbSNP
rs1318303742 2279 dbSNP
rs936784823 2280 dbSNP
rs1218407494 2283 dbSNP
rs1248069820 2284 dbSNP
rs1436873634 2287 dbSNP
rs1053979030 2288 dbSNP
rs1365174259 2304 dbSNP
rs1473969935 2311 dbSNP
rs967899179 2316 dbSNP
rs892682993 2317 dbSNP
rs1463415808 2318 dbSNP
rs759077587 2320 dbSNP
rs1041426568 2322 dbSNP
rs10157453 2331 dbSNP
rs901223166 2334 dbSNP
rs538854427 2336 dbSNP
rs1331174426 2352 dbSNP
rs186191927 2357 dbSNP
rs1028324856 2364 dbSNP
rs1293940874 2365 dbSNP
rs1234997788 2370 dbSNP
rs1212218292 2399 dbSNP
rs1033506420 2402 dbSNP
rs1338577437 2411 dbSNP
rs1323604064 2413 dbSNP
rs1491567990 2413 dbSNP
rs397979769 2413 dbSNP
rs71027293 2413 dbSNP
rs879224241 2413 dbSNP
rs1491548593 2414 dbSNP
rs1006437969 2415 dbSNP
rs1016125672 2416 dbSNP
rs959454713 2417 dbSNP
rs972043473 2417 dbSNP
rs1409015701 2418 dbSNP
rs1434264668 2418 dbSNP
rs1313570993 2419 dbSNP
rs377198041 2420 dbSNP
rs1293393669 2426 dbSNP
rs1421086280 2426 dbSNP
rs1173744352 2427 dbSNP
rs1227931014 2427 dbSNP
rs12731724 2430 dbSNP
rs970348602 2430 dbSNP
rs1209784583 2431 dbSNP
rs1435332722 2432 dbSNP
rs1314668196 2433 dbSNP
rs1423447636 2436 dbSNP
rs980437741 2449 dbSNP
rs1202832119 2455 dbSNP
rs1261667485 2456 dbSNP
rs926339529 2457 dbSNP
rs1408717992 2459 dbSNP
rs1298200138 2464 dbSNP
rs1393593702 2471 dbSNP
rs1375135451 2486 dbSNP
rs991611220 2491 dbSNP
rs1174567722 2496 dbSNP
rs1217084206 2503 dbSNP
rs190715835 2508 dbSNP
rs936450068 2509 dbSNP
rs1347593853 2510 dbSNP
rs529173958 2516 dbSNP
rs752355580 2520 dbSNP
rs945617160 2525 dbSNP
rs1297622856 2532 dbSNP
rs1368600322 2537 dbSNP
rs1233255631 2543 dbSNP
rs1303756461 2554 dbSNP
rs1349540186 2561 dbSNP
rs971434707 2566 dbSNP
rs554251003 2575 dbSNP
rs1265378057 2577 dbSNP
rs908797416 2578 dbSNP
rs1303434313 2597 dbSNP
rs1486486354 2599 dbSNP
rs941633304 2602 dbSNP
rs1041334116 2603 dbSNP
rs1251673778 2606 dbSNP
rs1468347708 2607 dbSNP
rs974313505 2615 dbSNP
rs1397156058 2618 dbSNP
rs1417490480 2619 dbSNP
rs574421907 2630 dbSNP
rs1364520620 2637 dbSNP
rs755868808 2643 dbSNP
rs183427147 2655 dbSNP
rs1322514914 2656 dbSNP
rs901434510 2657 dbSNP
rs542572933 2660 dbSNP
rs577065357 2661 dbSNP
rs1221658975 2664 dbSNP
rs1305832466 2665 dbSNP
rs150352409 2679 dbSNP
rs1240520375 2681 dbSNP
rs1271879191 2693 dbSNP
rs888518013 2698 dbSNP
rs1214716173 2707 dbSNP
rs562740665 2708 dbSNP
rs531623106 2709 dbSNP
rs1176910344 2723 dbSNP
rs1016505897 2726 dbSNP
rs1175234443 2729 dbSNP
rs1249084877 2729 dbSNP
rs945062913 2746 dbSNP
rs1415621955 2755 dbSNP
rs1042075136 2756 dbSNP
rs1165394573 2758 dbSNP
rs1351461496 2789 dbSNP
rs1439743331 2790 dbSNP
rs753728414 2793 dbSNP
rs1373574921 2797 dbSNP
rs897689383 2812 dbSNP
rs993743693 2813 dbSNP
rs1429000863 2817 dbSNP
rs548494837 2818 dbSNP
rs1234503615 2827 dbSNP
rs1275598393 2827 dbSNP
rs1306165966 2841 dbSNP
rs1024859727 2864 dbSNP
rs1252133219 2864 dbSNP
rs1000764797 2866 dbSNP
rs1481717327 2869 dbSNP
rs1185903928 2876 dbSNP
rs1256823340 2878 dbSNP
rs1475568200 2885 dbSNP
rs779182264 2887 dbSNP
rs757121885 2895 dbSNP
rs1415832826 2901 dbSNP
rs894996450 2908 dbSNP
rs1169417355 2912 dbSNP
rs1013807569 2915 dbSNP
rs1292595991 2918 dbSNP
rs1431196530 2920 dbSNP
rs958009711 2920 dbSNP
rs561120588 2926 dbSNP
rs559284921 2927 dbSNP
rs546735062 2928 dbSNP
rs982862609 2933 dbSNP
rs914049742 2934 dbSNP
rs1214383503 2944 dbSNP
rs1015637066 2945 dbSNP
rs1306055688 2946 dbSNP
rs1296653059 2963 dbSNP
rs745905952 2966 dbSNP
rs1209066931 2972 dbSNP
rs566628263 2973 dbSNP
rs1214494871 2974 dbSNP
rs974347654 2975 dbSNP
rs867348917 2980 dbSNP
rs1279873733 2986 dbSNP
rs976905678 2989 dbSNP
rs921494840 2995 dbSNP
rs1213080047 2998 dbSNP
rs1239151396 3015 dbSNP
rs932850856 3017 dbSNP
rs932933620 3025 dbSNP
rs1049696497 3053 dbSNP
rs538820113 3057 dbSNP
rs369434495 3063 dbSNP
rs941432973 3063 dbSNP
rs772301125 3064 dbSNP
rs1195316166 3065 dbSNP
rs187966851 3070 dbSNP
rs897235677 3078 dbSNP
rs1271271158 3079 dbSNP
rs1232507084 3081 dbSNP
rs993323542 3081 dbSNP
rs945151750 3082 dbSNP
rs1303009548 3085 dbSNP
rs1348804924 3088 dbSNP
rs1042106120 3089 dbSNP
rs903552338 3097 dbSNP
rs1446492871 3098 dbSNP
rs1215066898 3103 dbSNP
rs1046278881 3109 dbSNP
rs906438138 3113 dbSNP
rs780365233 3122 dbSNP
rs1394133360 3123 dbSNP
rs1033343174 3124 dbSNP
rs1163403782 3131 dbSNP
rs1399610390 3134 dbSNP
rs1405237958 3134 dbSNP
rs1319599710 3140 dbSNP
rs1391437660 3147 dbSNP
rs957762723 3148 dbSNP
rs1325597672 3149 dbSNP
rs747241368 3150 dbSNP
rs1010998384 3153 dbSNP
rs1438952150 3162 dbSNP
rs1394826710 3167 dbSNP
rs1462665512 3171 dbSNP
rs1350101098 3173 dbSNP
rs1224391108 3175 dbSNP
rs895020130 3176 dbSNP
rs966874711 3179 dbSNP
rs976874619 3184 dbSNP
rs1252084205 3190 dbSNP
rs1013423596 3194 dbSNP
rs1200638812 3195 dbSNP
rs1363455279 3200 dbSNP
rs1430389165 3203 dbSNP
rs1025268164 3204 dbSNP
rs1230785603 3206 dbSNP
rs768990379 3209 dbSNP
rs1158586234 3217 dbSNP
rs1004329055 3219 dbSNP
rs1364655349 3220 dbSNP
rs372622036 3227 dbSNP
rs575928518 3231 dbSNP
rs538155277 3238 dbSNP
rs1460273445 3256 dbSNP
rs1015671297 3264 dbSNP
rs1164820404 3265 dbSNP
rs1395765389 3266 dbSNP
rs1388860455 3268 dbSNP
rs1272598745 3272 dbSNP
rs985708731 3273 dbSNP
rs962725340 3283 dbSNP
rs1215780799 3287 dbSNP
rs1335348437 3296 dbSNP
rs1266074112 3302 dbSNP
rs974042549 3304 dbSNP
rs555285177 3305 dbSNP
rs56097836 3328 dbSNP
rs1231437571 3334 dbSNP
rs1471757114 3335 dbSNP
rs954479408 3342 dbSNP
rs1356834181 3344 dbSNP
rs1211389632 3348 dbSNP
rs1037459285 3364 dbSNP
rs1476017750 3375 dbSNP
rs1156527837 3376 dbSNP
rs918652229 3390 dbSNP
rs1383715955 3395 dbSNP
rs1473938696 3397 dbSNP
rs987060646 3405 dbSNP
rs1319340660 3407 dbSNP
rs764174870 3408 dbSNP
rs1419189735 3409 dbSNP
rs376885986 3413 dbSNP
rs762278515 3417 dbSNP
rs1166477694 3422 dbSNP
rs1347510784 3447 dbSNP
rs1396047382 3451 dbSNP
rs1410690963 3465 dbSNP
rs1446417435 3466 dbSNP
rs1292818248 3467 dbSNP
rs1046247085 3475 dbSNP
rs1414212968 3480 dbSNP
rs533786053 3482 dbSNP
rs1340936229 3486 dbSNP
rs1246753782 3496 dbSNP
rs1002114580 3498 dbSNP
rs1055016198 3506 dbSNP
rs966829437 3512 dbSNP
rs977828759 3513 dbSNP
rs1286687233 3521 dbSNP
rs553877130 3536 dbSNP
rs1276299881 3540 dbSNP
rs770159769 3543 dbSNP
rs544015913 3551 dbSNP
rs1010542374 3553 dbSNP
rs191490960 3554 dbSNP
rs925003957 3555 dbSNP
rs138015771 3557 dbSNP
rs1286050595 3558 dbSNP
rs1440696765 3565 dbSNP
rs773726761 3569 dbSNP
rs1054680840 3579 dbSNP
rs1434207032 3584 dbSNP
rs902241884 3587 dbSNP
rs1402824467 3588 dbSNP
rs1258071546 3596 dbSNP
rs916247103 3606 dbSNP
rs1316113666 3615 dbSNP
rs1325685756 3616 dbSNP
rs949364536 3617 dbSNP
rs758985554 3621 dbSNP
rs1299399033 3630 dbSNP
rs886297687 3631 dbSNP
rs1475907079 3634 dbSNP
rs1232936458 3636 dbSNP
rs1004696809 3640 dbSNP
rs1256015383 3642 dbSNP
rs1037132511 3644 dbSNP
rs1465668878 3654 dbSNP
rs1190854062 3655 dbSNP
rs1393531329 3658 dbSNP
rs936645 3662 dbSNP
rs1379501907 3663 dbSNP
rs1470293558 3670 dbSNP
rs576232495 3671 dbSNP
rs1451686946 3680 dbSNP
rs995586633 3691 dbSNP
rs954175467 3692 dbSNP
rs1028774521 3693 dbSNP
rs866448589 3697 dbSNP
rs1039617276 3698 dbSNP
rs899668940 3700 dbSNP
rs1322223814 3701 dbSNP
rs1312817257 3709 dbSNP
rs1439784228 3710 dbSNP
rs775832147 3713 dbSNP
rs1416734577 3723 dbSNP
rs1008916756 3746 dbSNP
rs1019841051 3750 dbSNP
rs966862248 3751 dbSNP
rs541746454 3756 dbSNP
rs562023576 3764 dbSNP
rs963304547 3765 dbSNP
rs1330376681 3766 dbSNP
rs182917086 3766 dbSNP
rs925035052 3767 dbSNP
rs1335440794 3768 dbSNP
rs957824046 3771 dbSNP
rs1240024051 3775 dbSNP
rs775044199 3785 dbSNP
rs1192060170 3789 dbSNP
rs1269714137 3791 dbSNP
rs1417430603 3797 dbSNP
rs918609400 3805 dbSNP
rs546993324 3806 dbSNP
rs1342631983 3808 dbSNP
rs571051910 3811 dbSNP
rs1457649810 3813 dbSNP
rs990578380 3817 dbSNP
rs1161268121 3819 dbSNP
rs1233212935 3824 dbSNP
rs760234195 3837 dbSNP
rs11578325 3839 dbSNP
rs1202480085 3845 dbSNP
rs1249169613 3855 dbSNP
rs927371060 3856 dbSNP
rs1230830961 3862 dbSNP
rs201244985 3862 dbSNP
rs546496835 3863 dbSNP
rs532453720 3864 dbSNP
rs753550100 3871 dbSNP
rs1183515368 3872 dbSNP
rs1244560434 3874 dbSNP
rs1452965955 3875 dbSNP
rs1173359117 3876 dbSNP
rs907766970 3880 dbSNP
rs567543201 3884 dbSNP
rs1437091264 3897 dbSNP
rs1267493152 3900 dbSNP
rs1166295128 3910 dbSNP
rs745358316 3911 dbSNP
rs1252705058 3918 dbSNP
rs142682192 3921 dbSNP
rs1184310626 3932 dbSNP
rs559829737 3935 dbSNP
rs1037502438 3938 dbSNP
rs1415551024 3951 dbSNP
rs1331139271 3956 dbSNP
rs750257396 3964 dbSNP
rs1052386664 3972 dbSNP
rs868614283 3972 dbSNP
rs757110740 3977 dbSNP
rs1351261769 3978 dbSNP
rs995617717 3992 dbSNP
rs765218764 3993 dbSNP
rs146023536 3997 dbSNP
rs1350007951 3999 dbSNP
rs1008200794 4001 dbSNP
rs997813435 4013 dbSNP
rs1379035666 4015 dbSNP
rs889549573 4018 dbSNP
rs1315210896 4021 dbSNP
rs1006985891 4023 dbSNP
rs536516541 4023 dbSNP
rs1250326197 4039 dbSNP
rs1484106725 4041 dbSNP
rs1339493569 4042 dbSNP
rs1020293891 4046 dbSNP
rs1255357381 4050 dbSNP
rs966893290 4051 dbSNP
rs962976283 4057 dbSNP
rs1415763323 4062 dbSNP
rs538443763 4065 dbSNP
rs999731056 4070 dbSNP
rs1264868269 4071 dbSNP
rs1167615458 4072 dbSNP
rs1032507818 4074 dbSNP
rs958187588 4081 dbSNP
rs1449478290 4084 dbSNP
rs990999839 4090 dbSNP
rs1305107849 4093 dbSNP
rs1025636918 4103 dbSNP
rs1023363315 4107 dbSNP
rs1228099342 4110 dbSNP
rs1298634966 4120 dbSNP
rs1232187112 4125 dbSNP
rs564182997 4125 dbSNP
rs1279625321 4142 dbSNP
rs1254015347 4143 dbSNP
rs1456009408 4145 dbSNP
rs970814434 4148 dbSNP
rs981767884 4152 dbSNP
rs907797875 4160 dbSNP
rs971355547 4185 dbSNP
rs750399500 4189 dbSNP
rs981445092 4194 dbSNP
rs1372940158 4195 dbSNP
rs927331986 4195 dbSNP
rs138830980 4197 dbSNP
rs1169671695 4199 dbSNP
rs553426807 4207 dbSNP
rs1461085716 4208 dbSNP
rs115276970 4209 dbSNP
rs931808113 4215 dbSNP
rs946647191 4218 dbSNP
rs1434863111 4237 dbSNP
rs1321557003 4253 dbSNP
rs1042663487 4262 dbSNP
rs902440885 4270 dbSNP
rs1380257734 4273 dbSNP
rs1345850785 4274 dbSNP
rs187260106 4279 dbSNP
rs747160762 4287 dbSNP
rs1326909540 4288 dbSNP
rs1326913885 4300 dbSNP
rs889843633 4301 dbSNP
rs1207894017 4303 dbSNP
rs1050732541 4304 dbSNP
rs889520280 4305 dbSNP
rs1007076524 4308 dbSNP
rs1038533788 4313 dbSNP
rs1270706705 4315 dbSNP
rs1478083495 4319 dbSNP
rs1333787162 4330 dbSNP
rs944038266 4334 dbSNP
rs576943197 4335 dbSNP
rs1457123137 4337 dbSNP
rs79782361 4339 dbSNP
rs556332693 4355 dbSNP
rs1470109244 4365 dbSNP
rs1460169739 4366 dbSNP
rs755122222 4370 dbSNP
rs781508105 4375 dbSNP
rs1331847698 4378 dbSNP
rs902515641 4383 dbSNP
rs1203712784 4386 dbSNP
rs999762248 4387 dbSNP
rs1349935795 4391 dbSNP
rs1227781672 4392 dbSNP
rs1032538451 4393 dbSNP
rs1429603036 4397 dbSNP
rs1331016250 4398 dbSNP
rs1195464677 4403 dbSNP
rs971659682 4404 dbSNP
rs745335761 4414 dbSNP
rs1475038869 4415 dbSNP
rs1165947439 4417 dbSNP
rs576114138 4419 dbSNP
rs777357210 4422 dbSNP
rs1223141999 4423 dbSNP
rs1249054569 4428 dbSNP
rs775173369 4433 dbSNP
rs1012390222 4434 dbSNP
rs1002860896 4438 dbSNP
rs1396882546 4440 dbSNP
rs1183585873 4442 dbSNP
rs141945773 4447 dbSNP
rs113344311 4452 dbSNP
rs1162970572 4453 dbSNP
rs1391741473 4462 dbSNP
rs572320503 4464 dbSNP
rs113278909 4466 dbSNP
rs1383819144 4473 dbSNP
rs192598057 4473 dbSNP
rs1290968630 4488 dbSNP
rs1288937836 4498 dbSNP
rs1354283166 4508 dbSNP
rs982268974 4509 dbSNP
rs1294777985 4513 dbSNP
rs1352216444 4515 dbSNP
rs1014625579 4516 dbSNP
rs1283320027 4517 dbSNP
rs773638582 4519 dbSNP
rs1260469153 4529 dbSNP
rs968246059 4530 dbSNP
rs868663095 4539 dbSNP
rs1219421763 4542 dbSNP
rs977968621 4543 dbSNP
rs1205188734 4546 dbSNP
rs1254632605 4568 dbSNP
rs538695116 4571 dbSNP
rs1187447403 4576 dbSNP
rs973333062 4578 dbSNP
rs1473961171 4581 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucucGUUCUGG--GGCAGAGAUUu 5'
              ::||:||  || |  | || 
Target 5' ----UGAGGCCAGCC-UGGCCAAc 3'
1 - 19
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000373816.1 | 3UTR | UGAGGCCAGCCUGGCCAACAUGGUGAAACCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.85 1.2e-4 0.824 2.7e-4 13 Click to see details
GSE28544 Breast cancer 0.614 7.1e-4 0.552 2.6e-3 24 Click to see details
GSE26953 Aortic valvular endothelial cells 0.394 2.8e-2 0.361 4.2e-2 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.284 8.4e-2 0.276 9.1e-2 25 Click to see details
GSE42095 Differentiated embryonic stem cells 0.274 1.0e-1 0.313 7.3e-2 23 Click to see details
GSE32688 Pancreatic cancer 0.092 3.1e-1 0.078 3.4e-1 32 Click to see details
GSE38226 Liver fibrosis -0.089 3.5e-1 -0.155 2.5e-1 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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