pre-miRNA Information
pre-miRNA hsa-mir-497   
Genomic Coordinates chr17: 7017911 - 7018022
Synonyms MIRN497, hsa-mir-497, MIR497
Description Homo sapiens miR-497 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-497-3p
Sequence 64| CAAACCACACUGUGGUGUUAGA |85
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 17 - 7017957 29233923 MiREDiBase
A-to-I 4 17 - 7017956 29233923 MiREDiBase
A-to-I 20 17 - 7017940 24964909, 25521855, 27229138, 29165639, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1413601274 5 dbSNP
rs1028648384 6 dbSNP
rs1479092960 9 dbSNP
rs1261056598 10 dbSNP
rs997278260 11 dbSNP
rs1324708562 13 dbSNP
rs755634302 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CAPRIN1   
Synonyms GPIAP1, GPIP137, GRIP137, M11S1, RNG105, p137GPI
Description cell cycle associated protein 1
Transcript NM_005898   
Other Transcripts NM_203364   
Expression
Putative miRNA Targets on CAPRIN1
3'UTR of CAPRIN1
(miRNA target sites are highlighted)
>CAPRIN1|NM_005898|3'UTR
   1 TCTGATTCACAGGATTATGTTTAATCGCCAAAAACACACTGGCCAGTGTACCATAATATGTTACCAGAAGAGTTATTATC
  81 TATTTGTTCTCCCTTTCAGGAAACTTATTGTAAAGGGACTGTTTTCATCCCATAAAGACAGGACTACAATTGTCAGCTTT
 161 CTATTACCTGGATATGGAAGGAAACTATTTTTACTCTGCATGTTCTGTCCTAAGCGTCATCTTGAGCCTTGCACATGATA
 241 CTCAGATTCCTCACCCTTGCTTAGGAGTAAAACAATATACTTTACAGGGTGATAATAATCTCCATAGTTATTTGAAGTGG
 321 CTTGAAAAAGGCAAGATTGACTTTTATGACATTGGATAAAATCTACAAATCAGCCCTCGAGTTATTCAATGATAACTGAC
 401 AAACTAAATTATTTCCCTAGAAAGGAAGATGAAAGGAGTGGAGTGTGGTTTGGCAGAACAACTGCATTTCACAGCTTTTC
 481 CAGTTAAATTGGAGCACTGAACGTTCAGATGCATACCAAATTATGCATGGGTCCTAATCACACATATAAGGCTGGCTACC
 561 AGCTTTGACACAGCACTGTTCATCTGGCCAAACAACTGTGGTTAAAAACACATGTAAAATGCTTTTTAACAGCTGATACT
 641 GTATAAGACAAAGCCAAGATGCAAAATTAGGCTTTGATTGGCACTTTTTGAAAAATATGCAACAAATATGGGATGTAATC
 721 CGGATGGCCGCTTCTGTACTTAATGTGAAATATTTAGATACCTTTTTGAACACTTAACAGTTTCTTTGAGACAATGACTT
 801 TTGTAAGGATTGGTACTATCTATCATTCCTTATGACATGTACATTGTCTGTCACTAATCCTTGGATTTTGCTGTATTGTC
 881 ACCTAAATTGGTACAGGTACTGATGAAAATCTCTAGTGGATAATCATAACACTCTCGGTCACATGTTTTTCCTTCAGCTT
 961 GAAAGCTTTTTTTTAAAAGGAAAAGATACCAAATGCCTGCTGCTACCACCCTTTTCAATTGCTATCTTTTGAAAGGCACC
1041 AGTATGTGTTTTAGATTGATTTCCCTGTTTCAGGGAAATCACGGACAGTAGTTTCAGTTCTGATGGTATAAGCAAAACAA
1121 ATAAAACGTTTATAAAAGTTGTATCTTGAAACACTGGTGTTCAACAGCTAGCAGCTTATGTGATTCACCCCATGCCACGT
1201 TAGTGTCACAAATTTTATGGTTTATCTCCAGCAACATTTCTCTAGTACTTGCACTTATTATCTTTTGTCTAATTTAACCT
1281 TAACTGAATTCTCCGTTTCTCCTGGAGGCATTTATATTCAGTGATAATTCCTTCCCTTAGATGCATAGGGAGAGTCTCTA
1361 AATTTGATGGAAATGGACACTTGAGTAGTGACTTAGCCTTATGTACTCTGTTGGAATTTGTGCTAGCAGTTTGAGCACTA
1441 GTTCTGTGTGCCTAGGAAGTTAATGCTGCTTATTGTCTCATTCTGACTTCATGGAGAATTAATCCCACCTTTAAGCAAAG
1521 GCTACTAAGTTAATGGTATTTTCTGTGCAGAAATTAAATTTTATTTTCAGCATTTAGCCCAGGAATTCTTCCAGTAGGTG
1601 CTCAGCTATTTAAAAACAAAACTATTCTCAAACATTCATCATTAGACAACTGGAGTTTTTGCTGGTTTTGTAACCTACCA
1681 AAATGGATAGGCTGTTGAACATTCCACATTCAAAAGTTTTGTAGGGTGGTGGGAAATGGGGGATCTTCAATGTTTATTTT
1761 AAAATAAAATAAAATAAGTTCTTGACTTTTCTCATGTGTGGTTGTGGTACATCATATTGGAAGGGTTAACCTGTTACTTT
1841 GGCAAATGAGTATTTTTTTGCTAGCACCTCCCCTTGCGTGCTTTAAATGACATCTGCCTGGGATGTACCACAACCATATG
1921 TTACCTGTATCTTAGGGGAATGGATAAAATATTTGTGGTTTACTGGGTAATCCCTAGATGATGTATGCTTGCAGTCCTAT
2001 ATAAAACTAAATTTGCTATCTGTGTAGAAAATAATTTCATGACATTTACAATCAGGACTGAAGTAAGTTCTTCACACAGT
2081 GACCTCTGAATCAGTTTCAGAGAAGGGATGGGGGAGAAAATGCCTTCTAGGTTTTGAACTTCTATGCATTAGTGCAGATG
2161 TTGTGAATGTGTAAAGGTGTTCATAGTTTGACTGTTTCTATGTATGTTTTTTCAAAGAATTGTTCCTTTTTTTGAACTAT
2241 AATTTTTCTTTTTTTGGTTATTTTACCATCACAGTTTAAATGTATATCTTTTATGTCTCTACTCAGACCATATTTTTAAA
2321 GGGGTGCCTCATTATGGGGCAGAGAACTTTTCAATAAGTCTCATTAAGATCTGAATCTTGGTTCTAAGCATTCTGTATAA
2401 TATGTGATTGCTTGTCCTAGCTGCAGAAGGCCTTTTGTTTGGTCAAATGCATATTTTAGCAGAGTTTCAAGGAAATGATT
2481 GTCACACATGTCACTGTAGCCTCTTGGTGTAGCAAGCTCACATACAAAATACTTTTGTATATGCATAATATAAATCATCT
2561 CATGTGGATATGAAACTTCTTTTTTAAAACTTAAAAAGGTAGAATGTTATTGATTACCTTGATTAGGGCAGTTTTATTTC
2641 CAGATCCTAATAATTCCTAAAAAATATGGAAAAGTTTTTTTTCAATCATTGTACCTTGATATTAAAACAAATATCCTTTA
2721 AGTATTTCTAATCAGTTAGCTTCTACAGTTCTTTTGTCTCCTTTTATATGCAGCTCTTACGTGGGAGACTTTTCCACTTA
2801 AAGGAGACATAGAATGTGTGCTTATTCTCAGAAGGTTCATTAACTGAGGTGATGAGTTAACAACTAGTTGAGCAGTCAGC
2881 TTCCTAAGTGTTTTAGGACATTTGTTCATTATATTTTCCGTCATATAACTAGAGGAAGTGGAATGCAGATAAGTGCCGAA
2961 TTCAAACCCTTCATTTTATGTTTAAGCTCCTGAATCTGCATTCCACTTGGGTTGTTTTTAAGCATTCTAAATTTTAGTTG
3041 ATTATAAGTTAGATTTCACAGAATCAGTATTGCCCTTGATCTTGTCCTTTTTATGGAGTTAACGGGGAGGAAGACCCCTC
3121 AGGAAAACGAAAGTAAATTGTTAAGGCTCATCTTCATACCTTTTTCCATTTTGAATCCTACAAAAATACTGCAAAAGACT
3201 AGTGAATGTTTAAAATTACACTAGATTAAATAATATGAAAGTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agaUUGUGGUGUCACACCAAAc 5'
             |: | :: |||||||||| 
Target 5' gaaAGGAGTGGAGTGTGGTTTg 3'
431 - 452 159.00 -18.10
2
miRNA  3' agaUUGUGGUGU-CACACCAAAc 5'
             :|:|  |:|  |||||||| 
Target 5' atgGATAAAATATTTGTGGTTTa 3'
1940 - 1962 151.00 -9.20
3
miRNA  3' agAUUG--UGGUGU-CACACCAAac 5'
            |:||   :| || ||||||||  
Target 5' ctTGACTTTTCTCATGTGTGGTTgt 3'
1781 - 1805 138.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30473409 27 COSMIC
COSN30528727 87 COSMIC
COSN30103667 92 COSMIC
COSN32062661 98 COSMIC
COSN30456370 103 COSMIC
COSN31599464 118 COSMIC
COSN31558623 182 COSMIC
COSN30120460 204 COSMIC
COSN24303838 277 COSMIC
COSN1529680 296 COSMIC
COSN15755419 547 COSMIC
COSN5795205 596 COSMIC
COSN31527950 620 COSMIC
COSN28202063 844 COSMIC
COSN29229666 870 COSMIC
COSN30426197 1349 COSMIC
COSN31529076 1363 COSMIC
COSN26576081 1414 COSMIC
COSN28897002 1437 COSMIC
COSN5907889 1450 COSMIC
COSN30177205 1569 COSMIC
COSN15709951 1772 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs746096055 6 dbSNP
rs1054879366 7 dbSNP
rs755558777 8 dbSNP
rs895005767 13 dbSNP
rs1159136176 16 dbSNP
rs780786162 18 dbSNP
rs1027709539 19 dbSNP
rs747694951 22 dbSNP
rs756207402 26 dbSNP
rs886540036 27 dbSNP
rs1190518310 28 dbSNP
rs1369356325 35 dbSNP
rs1167647005 36 dbSNP
rs1472771278 42 dbSNP
rs1004852783 46 dbSNP
rs1473335254 58 dbSNP
rs1369829406 59 dbSNP
rs1019398304 60 dbSNP
rs375220671 61 dbSNP
rs966280974 63 dbSNP
rs975016585 65 dbSNP
rs947896641 73 dbSNP
rs1485044721 77 dbSNP
rs1029154237 83 dbSNP
rs957499794 90 dbSNP
rs1206719186 103 dbSNP
rs1482003919 106 dbSNP
rs536545376 109 dbSNP
rs1228670574 118 dbSNP
rs1358274248 121 dbSNP
rs191894780 125 dbSNP
rs1242935758 130 dbSNP
rs914959473 133 dbSNP
rs555176882 139 dbSNP
rs977776060 143 dbSNP
rs906449703 149 dbSNP
rs575973278 150 dbSNP
rs1296496390 151 dbSNP
rs771230403 154 dbSNP
rs1161060498 155 dbSNP
rs892531711 160 dbSNP
rs1283887833 164 dbSNP
rs538268171 169 dbSNP
rs895079479 184 dbSNP
rs1222279903 186 dbSNP
rs1221479041 189 dbSNP
rs1453085469 192 dbSNP
rs1287423907 193 dbSNP
rs1212865164 197 dbSNP
rs1334371907 201 dbSNP
rs1277727783 203 dbSNP
rs930468917 211 dbSNP
rs1438042757 215 dbSNP
rs1206241211 216 dbSNP
rs975556275 217 dbSNP
rs1437853213 228 dbSNP
rs1482459350 235 dbSNP
rs1049370602 236 dbSNP
rs558594668 245 dbSNP
rs1005418421 246 dbSNP
rs907589566 251 dbSNP
rs1321932492 255 dbSNP
rs1461260809 268 dbSNP
rs145563168 276 dbSNP
rs182538694 279 dbSNP
rs1455167720 282 dbSNP
rs1406661572 286 dbSNP
rs996195126 293 dbSNP
rs765279390 295 dbSNP
rs973150018 306 dbSNP
rs765788364 311 dbSNP
rs1353972758 312 dbSNP
rs868783857 318 dbSNP
rs940534292 325 dbSNP
rs561139192 326 dbSNP
rs1037509773 331 dbSNP
rs1303630811 335 dbSNP
rs773228659 339 dbSNP
rs1347308939 342 dbSNP
rs1020904242 345 dbSNP
rs1283603114 346 dbSNP
rs966481957 347 dbSNP
rs978266987 348 dbSNP
rs1219912167 359 dbSNP
rs1347685757 365 dbSNP
rs947829166 369 dbSNP
rs1274005489 375 dbSNP
rs1432388509 376 dbSNP
rs1344260162 377 dbSNP
rs534481064 379 dbSNP
rs960334055 386 dbSNP
rs574739461 390 dbSNP
rs916459044 409 dbSNP
rs1449826665 411 dbSNP
rs939276062 418 dbSNP
rs1249707720 419 dbSNP
rs1186480417 430 dbSNP
rs61880386 436 dbSNP
rs563672893 439 dbSNP
rs368694695 445 dbSNP
rs1210826522 455 dbSNP
rs368964713 456 dbSNP
rs532504128 457 dbSNP
rs1222563606 461 dbSNP
rs1278785833 463 dbSNP
rs930591110 467 dbSNP
rs1048883953 469 dbSNP
rs1270490491 473 dbSNP
rs1489992910 483 dbSNP
rs1343537012 484 dbSNP
rs1300209566 488 dbSNP
rs1213191827 494 dbSNP
rs552291734 497 dbSNP
rs1198841662 503 dbSNP
rs761719703 504 dbSNP
rs767548151 505 dbSNP
rs1356983693 507 dbSNP
rs1312170501 509 dbSNP
rs1430290386 511 dbSNP
rs762333006 517 dbSNP
rs1166422811 521 dbSNP
rs940773722 525 dbSNP
rs1427710364 527 dbSNP
rs1419069109 533 dbSNP
rs1022344216 540 dbSNP
rs1484259293 544 dbSNP
rs1040454831 545 dbSNP
rs1210284339 546 dbSNP
rs1483633386 547 dbSNP
rs114947458 548 dbSNP
rs996963052 549 dbSNP
rs141360049 550 dbSNP
rs1363835550 559 dbSNP
rs1312954908 560 dbSNP
rs1229720098 563 dbSNP
rs1353216032 569 dbSNP
rs955603368 572 dbSNP
rs1422613233 574 dbSNP
rs1372260940 577 dbSNP
rs1296449822 580 dbSNP
rs1322847355 602 dbSNP
rs1326735707 604 dbSNP
rs1050427371 610 dbSNP
rs76454700 613 dbSNP
rs1425729033 614 dbSNP
rs559005721 617 dbSNP
rs761367805 622 dbSNP
rs1415971994 624 dbSNP
rs1363999869 628 dbSNP
rs189744866 631 dbSNP
rs769205217 634 dbSNP
rs1230259668 637 dbSNP
rs1194633364 641 dbSNP
rs1480495755 645 dbSNP
rs961703340 649 dbSNP
rs1266365476 655 dbSNP
rs973483041 658 dbSNP
rs1293298738 662 dbSNP
rs920353440 663 dbSNP
rs1272157154 669 dbSNP
rs1228469466 674 dbSNP
rs1351863833 679 dbSNP
rs1304756652 680 dbSNP
rs1390709245 682 dbSNP
rs1020431738 696 dbSNP
rs182204264 698 dbSNP
rs1459681133 699 dbSNP
rs1392546713 701 dbSNP
rs550063339 704 dbSNP
rs1164550232 708 dbSNP
rs1457812538 709 dbSNP
rs569876318 710 dbSNP
rs538584419 711 dbSNP
rs145287074 722 dbSNP
rs939185802 723 dbSNP
rs1467468554 727 dbSNP
rs1251975759 730 dbSNP
rs960445903 731 dbSNP
rs1449042867 734 dbSNP
rs1191472140 740 dbSNP
rs572050111 744 dbSNP
rs1247867964 751 dbSNP
rs1258382247 754 dbSNP
rs1237720132 755 dbSNP
rs913815328 757 dbSNP
rs990411690 759 dbSNP
rs946736270 761 dbSNP
rs1185680492 763 dbSNP
rs534410812 773 dbSNP
rs1436041910 776 dbSNP
rs1387449749 777 dbSNP
rs916287363 779 dbSNP
rs114425809 780 dbSNP
rs1162522936 781 dbSNP
rs574676795 791 dbSNP
rs1385559664 794 dbSNP
rs75292625 795 dbSNP
rs899914880 803 dbSNP
rs996910642 804 dbSNP
rs1258355367 814 dbSNP
rs113052175 816 dbSNP
rs1259236974 816 dbSNP
rs151202936 816 dbSNP
rs552033793 816 dbSNP
rs71644540 816 dbSNP
rs1387691300 818 dbSNP
rs1257665040 821 dbSNP
rs1232036472 822 dbSNP
rs34013993 822 dbSNP
rs985140939 823 dbSNP
rs907799247 824 dbSNP
rs5790976 825 dbSNP
rs1298003177 832 dbSNP
rs1316759796 834 dbSNP
rs1328358603 838 dbSNP
rs940497820 844 dbSNP
rs752814868 845 dbSNP
rs1403064553 846 dbSNP
rs1051145963 847 dbSNP
rs1433347297 860 dbSNP
rs866493356 867 dbSNP
rs1395022495 869 dbSNP
rs767947125 871 dbSNP
rs1476631059 874 dbSNP
rs1353466767 876 dbSNP
rs1203936508 879 dbSNP
rs1040236544 890 dbSNP
rs1423855209 895 dbSNP
rs891268603 897 dbSNP
rs1004348073 910 dbSNP
rs1485273579 910 dbSNP
rs1275272376 911 dbSNP
rs1015809654 919 dbSNP
rs923319131 926 dbSNP
rs1268618121 932 dbSNP
rs932090641 933 dbSNP
rs1205734545 934 dbSNP
rs1295140824 935 dbSNP
rs557584886 937 dbSNP
rs544622286 938 dbSNP
rs980493194 940 dbSNP
rs1394829090 943 dbSNP
rs1167725103 944 dbSNP
rs1423514669 951 dbSNP
rs147631806 953 dbSNP
rs1042331397 959 dbSNP
rs547734992 967 dbSNP
rs1183965871 974 dbSNP
rs903453074 975 dbSNP
rs1271974434 976 dbSNP
rs1210226626 980 dbSNP
rs1357239047 988 dbSNP
rs1275355334 989 dbSNP
rs1231513526 996 dbSNP
rs1002956964 999 dbSNP
rs1289486973 1001 dbSNP
rs1043713809 1012 dbSNP
rs1444937943 1012 dbSNP
rs188015956 1019 dbSNP
rs1035828372 1025 dbSNP
rs896238091 1037 dbSNP
rs932670101 1041 dbSNP
rs1460447366 1045 dbSNP
rs1156890546 1067 dbSNP
rs1410907812 1075 dbSNP
rs1159828455 1081 dbSNP
rs1011974566 1083 dbSNP
rs754637522 1084 dbSNP
rs1199299021 1089 dbSNP
rs1469694786 1113 dbSNP
rs1023288264 1114 dbSNP
rs951773450 1115 dbSNP
rs764315785 1119 dbSNP
rs575028176 1121 dbSNP
rs1004383491 1123 dbSNP
rs1037638658 1123 dbSNP
rs1395162889 1126 dbSNP
rs984494032 1128 dbSNP
rs1337067704 1129 dbSNP
rs996181724 1142 dbSNP
rs11032512 1144 dbSNP
rs142294812 1153 dbSNP
rs1225718219 1162 dbSNP
rs1001877317 1163 dbSNP
rs975908624 1164 dbSNP
rs1261729853 1170 dbSNP
rs1319640971 1171 dbSNP
rs560265618 1178 dbSNP
rs754360788 1180 dbSNP
rs1173138109 1184 dbSNP
rs923137414 1187 dbSNP
rs1196648286 1188 dbSNP
rs1455393932 1198 dbSNP
rs1192795878 1199 dbSNP
rs932033385 1199 dbSNP
rs987979684 1200 dbSNP
rs1468156059 1210 dbSNP
rs752250829 1210 dbSNP
rs758965193 1212 dbSNP
rs1445414014 1216 dbSNP
rs757294888 1217 dbSNP
rs1284159761 1218 dbSNP
rs947351093 1219 dbSNP
rs1350721171 1225 dbSNP
rs1179846473 1229 dbSNP
rs1301646736 1234 dbSNP
rs1234040283 1238 dbSNP
rs1365466700 1241 dbSNP
rs1290323651 1242 dbSNP
rs1041719967 1245 dbSNP
rs1344131229 1257 dbSNP
rs527508553 1259 dbSNP
rs1480758125 1260 dbSNP
rs1436449225 1261 dbSNP
rs1178318677 1262 dbSNP
rs903399910 1262 dbSNP
rs542325773 1263 dbSNP
rs1465213901 1266 dbSNP
rs1057211761 1267 dbSNP
rs912636705 1268 dbSNP
rs747452776 1270 dbSNP
rs940127182 1274 dbSNP
rs556661866 1279 dbSNP
rs575063258 1280 dbSNP
rs1241554245 1285 dbSNP
rs894676782 1286 dbSNP
rs1037181784 1295 dbSNP
rs1013053020 1296 dbSNP
rs898633958 1300 dbSNP
rs1023783322 1302 dbSNP
rs887539705 1303 dbSNP
rs931511848 1322 dbSNP
rs1306933624 1334 dbSNP
rs1044634546 1335 dbSNP
rs200651546 1337 dbSNP
rs377218505 1339 dbSNP
rs146518610 1340 dbSNP
rs867733996 1340 dbSNP
rs193091520 1345 dbSNP
rs1416091416 1346 dbSNP
rs1311993324 1356 dbSNP
rs1312263423 1359 dbSNP
rs546036803 1360 dbSNP
rs1253305861 1367 dbSNP
rs961955618 1370 dbSNP
rs1337467950 1374 dbSNP
rs1356107915 1389 dbSNP
rs1168098012 1399 dbSNP
rs529884094 1412 dbSNP
rs1408378070 1425 dbSNP
rs1419094004 1427 dbSNP
rs1188668235 1440 dbSNP
rs976018381 1445 dbSNP
rs550006215 1447 dbSNP
rs1204510971 1452 dbSNP
rs1030154524 1453 dbSNP
rs1481263567 1454 dbSNP
rs953161798 1455 dbSNP
rs2982590 1456 dbSNP
rs184055544 1457 dbSNP
rs947500650 1464 dbSNP
rs1273496737 1475 dbSNP
rs1020716400 1476 dbSNP
rs560779189 1486 dbSNP
rs1374418803 1496 dbSNP
rs746115010 1505 dbSNP
rs1391860915 1512 dbSNP
rs148089990 1521 dbSNP
rs1028195712 1522 dbSNP
rs770048479 1523 dbSNP
rs953999087 1523 dbSNP
rs1057288346 1524 dbSNP
rs916182688 1534 dbSNP
rs948852121 1538 dbSNP
rs1415715234 1545 dbSNP
rs1164326454 1554 dbSNP
rs1048565500 1556 dbSNP
rs887517857 1559 dbSNP
rs761124130 1563 dbSNP
rs1420138284 1573 dbSNP
rs564224779 1581 dbSNP
rs1253217563 1585 dbSNP
rs188208561 1599 dbSNP
rs1332268970 1602 dbSNP
rs1271934877 1604 dbSNP
rs1239155112 1615 dbSNP
rs1367265542 1634 dbSNP
rs878995277 1639 dbSNP
rs565517770 1643 dbSNP
rs1298268244 1644 dbSNP
rs1222971908 1660 dbSNP
rs1363285285 1679 dbSNP
rs1327704380 1701 dbSNP
rs1227996680 1702 dbSNP
rs1030228106 1705 dbSNP
rs1292942231 1712 dbSNP
rs1366042511 1713 dbSNP
rs534352437 1714 dbSNP
rs1007769982 1720 dbSNP
rs554210479 1721 dbSNP
rs920029712 1722 dbSNP
rs750607652 1727 dbSNP
rs1021493299 1737 dbSNP
rs1044623146 1738 dbSNP
rs1466817398 1744 dbSNP
rs1251997230 1750 dbSNP
rs1449141102 1751 dbSNP
rs969204271 1758 dbSNP
rs1486596092 1759 dbSNP
rs1258859793 1760 dbSNP
rs906101934 1760 dbSNP
rs977563062 1765 dbSNP
rs781102657 1775 dbSNP
rs1231809572 1779 dbSNP
rs1369042569 1785 dbSNP
rs1205498211 1794 dbSNP
rs1165748855 1795 dbSNP
rs1382829661 1797 dbSNP
rs1387290914 1807 dbSNP
rs924712497 1815 dbSNP
rs1287226721 1826 dbSNP
rs573087263 1831 dbSNP
rs960008210 1838 dbSNP
rs938940019 1843 dbSNP
rs992792323 1849 dbSNP
rs561049776 1853 dbSNP
rs916131753 1861 dbSNP
rs1385266988 1868 dbSNP
rs1429961429 1876 dbSNP
rs116805892 1878 dbSNP
rs1204049408 1879 dbSNP
rs1485917287 1881 dbSNP
rs1282466037 1882 dbSNP
rs775489069 1898 dbSNP
rs1346940516 1899 dbSNP
rs1049039252 1905 dbSNP
rs903642849 1919 dbSNP
rs531201531 1925 dbSNP
rs1293457360 1928 dbSNP
rs557263663 1934 dbSNP
rs549403853 1941 dbSNP
rs1290968412 1945 dbSNP
rs953944144 1961 dbSNP
rs897595384 1978 dbSNP
rs758595165 1979 dbSNP
rs1401891560 1981 dbSNP
rs577412193 1985 dbSNP
rs1463146476 1992 dbSNP
rs961640285 1994 dbSNP
rs1192291157 2000 dbSNP
rs972760681 2002 dbSNP
rs1385008131 2004 dbSNP
rs1185769206 2007 dbSNP
rs1051434932 2009 dbSNP
rs920002247 2014 dbSNP
rs952860097 2019 dbSNP
rs1312185418 2021 dbSNP
rs756109350 2027 dbSNP
rs140986595 2038 dbSNP
rs1216466632 2039 dbSNP
rs927421930 2048 dbSNP
rs1262216592 2061 dbSNP
rs1413421430 2061 dbSNP
rs1340411561 2062 dbSNP
rs938845308 2067 dbSNP
rs1393564271 2069 dbSNP
rs760642304 2072 dbSNP
rs913489899 2084 dbSNP
rs1461477492 2087 dbSNP
rs945035829 2089 dbSNP
rs192159279 2094 dbSNP
rs1243393265 2095 dbSNP
rs1472395142 2096 dbSNP
rs1233397025 2102 dbSNP
rs116974530 2103 dbSNP
rs1179607526 2110 dbSNP
rs1435924028 2110 dbSNP
rs1000591731 2112 dbSNP
rs1198300225 2124 dbSNP
rs1412501486 2128 dbSNP
rs999114561 2130 dbSNP
rs1275067053 2143 dbSNP
rs542262598 2144 dbSNP
rs183878322 2145 dbSNP
rs759179053 2157 dbSNP
rs531038545 2162 dbSNP
rs1457050046 2164 dbSNP
rs961357733 2175 dbSNP
rs1331138122 2177 dbSNP
rs1337867199 2178 dbSNP
rs1396244508 2184 dbSNP
rs1323233106 2185 dbSNP
rs1404315595 2187 dbSNP
rs994567040 2189 dbSNP
rs1160279610 2191 dbSNP
rs764932005 2192 dbSNP
rs567797147 2193 dbSNP
rs1302313388 2197 dbSNP
rs1027011572 2198 dbSNP
rs1224228013 2201 dbSNP
rs1255200635 2202 dbSNP
rs1219442802 2205 dbSNP
rs980155052 2207 dbSNP
rs1285534345 2220 dbSNP
rs1352182356 2221 dbSNP
rs927371058 2223 dbSNP
rs1290138813 2227 dbSNP
rs1235491449 2237 dbSNP
rs1372725134 2240 dbSNP
rs970699868 2241 dbSNP
rs780208991 2245 dbSNP
rs984416717 2248 dbSNP
rs960158433 2249 dbSNP
rs993036911 2249 dbSNP
rs1263606441 2257 dbSNP
rs1313560843 2258 dbSNP
rs1207648697 2261 dbSNP
rs1236333307 2266 dbSNP
rs910137134 2275 dbSNP
rs1174021771 2277 dbSNP
rs1480692512 2281 dbSNP
rs1179397605 2283 dbSNP
rs544759382 2285 dbSNP
rs972898378 2287 dbSNP
rs1189734580 2289 dbSNP
rs1477839568 2289 dbSNP
rs563336753 2294 dbSNP
rs752235928 2295 dbSNP
rs879333171 2305 dbSNP
rs1286012809 2308 dbSNP
rs781130550 2309 dbSNP
rs532365482 2310 dbSNP
rs1431962646 2311 dbSNP
rs936352469 2324 dbSNP
rs1212031838 2331 dbSNP
rs1412931232 2334 dbSNP
rs1350569465 2339 dbSNP
rs552173384 2345 dbSNP
rs76757174 2355 dbSNP
rs1271360296 2365 dbSNP
rs1428119128 2369 dbSNP
rs1355117689 2370 dbSNP
rs1339737080 2371 dbSNP
rs1313459662 2372 dbSNP
rs1436319884 2377 dbSNP
rs1373349037 2387 dbSNP
rs1444473456 2396 dbSNP
rs547201086 2400 dbSNP
rs1414065935 2403 dbSNP
rs1420501709 2404 dbSNP
rs752106119 2418 dbSNP
rs889534851 2424 dbSNP
rs888811057 2431 dbSNP
rs943870282 2433 dbSNP
rs1040917378 2441 dbSNP
rs1486960155 2447 dbSNP
rs1236040380 2449 dbSNP
rs10436 2453 dbSNP
rs1409183504 2457 dbSNP
rs757725355 2459 dbSNP
rs897049632 2477 dbSNP
rs994076419 2480 dbSNP
rs1472261138 2496 dbSNP
rs1346889568 2501 dbSNP
rs1217076100 2502 dbSNP
rs1316798464 2504 dbSNP
rs1027329661 2505 dbSNP
rs1416488791 2507 dbSNP
rs888415198 2509 dbSNP
rs1301977259 2514 dbSNP
rs528049951 2516 dbSNP
rs1277485701 2518 dbSNP
rs1034433101 2521 dbSNP
rs1042955832 2524 dbSNP
rs904442413 2532 dbSNP
rs1172876050 2533 dbSNP
rs1464105623 2537 dbSNP
rs1422964172 2543 dbSNP
rs960147044 2545 dbSNP
rs993394458 2546 dbSNP
rs1412346802 2551 dbSNP
rs998667054 2557 dbSNP
rs1181622030 2560 dbSNP
rs573873017 2562 dbSNP
rs1234225606 2568 dbSNP
rs1196321603 2571 dbSNP
rs1031501716 2573 dbSNP
rs1271909060 2576 dbSNP
rs967966782 2579 dbSNP
rs1234601367 2580 dbSNP
rs1483002401 2581 dbSNP
rs979005142 2582 dbSNP
rs1311994144 2583 dbSNP
rs1224108980 2584 dbSNP
rs1200807704 2591 dbSNP
rs1271442964 2593 dbSNP
rs1375314464 2593 dbSNP
rs895904139 2596 dbSNP
rs926214138 2597 dbSNP
rs1399857575 2606 dbSNP
rs1326655799 2609 dbSNP
rs772622010 2611 dbSNP
rs547790621 2620 dbSNP
rs1022910678 2625 dbSNP
rs1164736291 2628 dbSNP
rs1420480231 2629 dbSNP
rs1410558062 2630 dbSNP
rs567757938 2635 dbSNP
rs746228004 2648 dbSNP
rs769993859 2651 dbSNP
rs1411932824 2657 dbSNP
rs936300069 2658 dbSNP
rs780325369 2659 dbSNP
rs910962441 2668 dbSNP
rs943819298 2674 dbSNP
rs1370086690 2675 dbSNP
rs1239239221 2691 dbSNP
rs536744697 2692 dbSNP
rs1304504088 2693 dbSNP
rs970053407 2694 dbSNP
rs1388619883 2704 dbSNP
rs896958955 2704 dbSNP
rs1303721042 2706 dbSNP
rs984544191 2707 dbSNP
rs929807652 2708 dbSNP
rs1017145824 2713 dbSNP
rs961936577 2715 dbSNP
rs972887225 2718 dbSNP
rs922804182 2721 dbSNP
rs1395287942 2722 dbSNP
rs1195154688 2729 dbSNP
rs150232328 2731 dbSNP
rs895886829 2732 dbSNP
rs138879847 2734 dbSNP
rs749480789 2740 dbSNP
rs142181293 2746 dbSNP
rs1215595945 2747 dbSNP
rs188462784 2748 dbSNP
rs910312217 2749 dbSNP
rs535811008 2752 dbSNP
rs1043124382 2754 dbSNP
rs979339913 2756 dbSNP
rs904433846 2760 dbSNP
rs1300594572 2762 dbSNP
rs1382912489 2763 dbSNP
rs1342927783 2765 dbSNP
rs1296941379 2766 dbSNP
rs1340876631 2770 dbSNP
rs934620203 2774 dbSNP
rs1223783491 2777 dbSNP
rs1292654694 2779 dbSNP
rs1033220792 2781 dbSNP
rs774550958 2782 dbSNP
rs191828416 2786 dbSNP
rs985078268 2789 dbSNP
rs1260890368 2790 dbSNP
rs1192796834 2794 dbSNP
rs1221292870 2798 dbSNP
rs910911569 2801 dbSNP
rs1343130779 2802 dbSNP
rs895684282 2816 dbSNP
rs1243098952 2819 dbSNP
rs1228220757 2823 dbSNP
rs943716668 2826 dbSNP
rs1218514589 2831 dbSNP
rs1014053432 2833 dbSNP
rs976495578 2839 dbSNP
rs1336485667 2843 dbSNP
rs114951072 2845 dbSNP
rs1401021856 2850 dbSNP
rs1389588941 2853 dbSNP
rs544359228 2865 dbSNP
rs1298429616 2866 dbSNP
rs75745430 2873 dbSNP
rs770677956 2888 dbSNP
rs905944044 2889 dbSNP
rs1169356739 2892 dbSNP
rs1475456179 2893 dbSNP
rs373249608 2894 dbSNP
rs16925167 2901 dbSNP
rs1017382349 2908 dbSNP
rs1255696236 2910 dbSNP
rs879296421 2911 dbSNP
rs1196564234 2912 dbSNP
rs909788815 2919 dbSNP
rs531060852 2920 dbSNP
rs770990471 2921 dbSNP
rs1336106587 2924 dbSNP
rs1286513427 2926 dbSNP
rs1243027016 2927 dbSNP
rs559176843 2930 dbSNP
rs1340200647 2932 dbSNP
rs528359391 2942 dbSNP
rs895789015 2946 dbSNP
rs60854277 2947 dbSNP
rs567804281 2950 dbSNP
rs1363748372 2957 dbSNP
rs370809214 2958 dbSNP
rs903304991 2959 dbSNP
rs1161434953 2965 dbSNP
rs1000360840 2966 dbSNP
rs530457229 2970 dbSNP
rs1285338708 2987 dbSNP
rs964853252 2991 dbSNP
rs1441709317 2995 dbSNP
rs1236653367 3011 dbSNP
rs531866141 3011 dbSNP
rs978449974 3013 dbSNP
rs925635692 3014 dbSNP
rs1208521677 3020 dbSNP
rs763630180 3030 dbSNP
rs373714701 3039 dbSNP
rs1461981444 3044 dbSNP
rs1052941413 3059 dbSNP
rs202172542 3062 dbSNP
rs1308141665 3067 dbSNP
rs1366843307 3069 dbSNP
rs949846008 3073 dbSNP
rs1321036386 3082 dbSNP
rs1404642399 3086 dbSNP
rs1385590610 3087 dbSNP
rs35063541 3088 dbSNP
rs1160234342 3097 dbSNP
rs1471741509 3098 dbSNP
rs1044626948 3104 dbSNP
rs1378661297 3107 dbSNP
rs1019163151 3108 dbSNP
rs905937956 3108 dbSNP
rs1478489917 3119 dbSNP
rs570547678 3121 dbSNP
rs1412346184 3129 dbSNP
rs1287432929 3130 dbSNP
rs78126719 3130 dbSNP
rs61880387 3134 dbSNP
rs1352015176 3138 dbSNP
rs1387445404 3141 dbSNP
rs775242807 3148 dbSNP
rs1346700870 3154 dbSNP
rs976864125 3158 dbSNP
rs918337388 3159 dbSNP
rs1452971138 3160 dbSNP
rs1398100324 3161 dbSNP
rs34277839 3161 dbSNP
rs1359601796 3166 dbSNP
rs1174041491 3167 dbSNP
rs951235604 3176 dbSNP
rs1427607283 3185 dbSNP
rs1335598383 3186 dbSNP
rs1170879071 3187 dbSNP
rs983939435 3189 dbSNP
rs1038353671 3192 dbSNP
rs897188891 3193 dbSNP
rs994183977 3202 dbSNP
rs535285160 3205 dbSNP
rs559160957 3208 dbSNP
rs1029881477 3211 dbSNP
rs1338219104 3222 dbSNP
rs1487607169 3232 dbSNP
rs909695481 3237 dbSNP
rs937168741 3239 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agaUUGUGGUGU-CACACCaaac 5'
             || |: | | | ||||    
Target 5' aggAAGAUGAAAGGAGUGGagug 3'
3 - 25
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000341394.4 | 3UTR | AAAGGAAGAUGAAAGGAGUGGAGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.911 7.5e-6 0.779 8.5e-4 13 Click to see details
GSE28544 Breast cancer -0.687 1.0e-4 -0.642 3.6e-4 24 Click to see details
GSE19350 CNS germ cell tumors -0.654 1.1e-2 -0.189 2.8e-1 12 Click to see details
GSE32688 Pancreatic cancer 0.291 5.3e-2 0.175 1.7e-1 32 Click to see details
GSE42095 Differentiated embryonic stem cells -0.342 5.5e-2 -0.264 1.1e-1 23 Click to see details
GSE26953 Aortic valvular endothelial cells 0.168 2.2e-1 0.282 9.1e-2 24 Click to see details
GSE21687 Ependynoma primary tumors -0.087 2.5e-1 -0.089 2.4e-1 64 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.105 3.1e-1 -0.211 1.6e-1 25 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.083 3.6e-1 -0.409 3.7e-2 20 Click to see details
GSE38226 Liver fibrosis 0.025 4.6e-1 0.093 3.4e-1 21 Click to see details
GSE17498 Multiple myeloma -0.009 4.8e-1 -0.071 3.3e-1 40 Click to see details
GSE17498 Multiple myeloma -0.009 4.8e-1 -0.071 3.3e-1 40 Click to see details
GSE17498 Multiple myeloma -0.009 4.8e-1 -0.071 3.3e-1 40 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.694 0 0.397 0.05 18 Click to see details
CHOL 0.931 0 0.943 0 6 Click to see details
BRCA 0.164 0.15 0.226 0.08 42 Click to see details
THCA -0.118 0.22 -0.109 0.24 45 Click to see details
LIHC -0.142 0.23 0.057 0.38 30 Click to see details
KIRP -0.17 0.23 -0.223 0.17 21 Click to see details
LUSC 0.127 0.25 0.091 0.32 30 Click to see details
KICH 0.183 0.26 0.279 0.16 15 Click to see details
PRAD 0.079 0.3 0.124 0.21 46 Click to see details
UCEC -0.141 0.3 0.000 0.5 16 Click to see details
STAD -0.091 0.35 -0.105 0.33 21 Click to see details
KIRC -0.044 0.39 0.002 0.49 43 Click to see details
LUAD 0.184 0.41 0.400 0.3 4 Click to see details
PAAD -0.181 0.41 0.000 0.5 4 Click to see details
BLCA 0.073 0.46 0.800 0.1 4 Click to see details
ESCA -0.02 0.48 -0.103 0.39 10 Click to see details
ESCA -0.02 0.48 -0.103 0.39 10 Click to see details
ESCA -0.02 0.48 -0.103 0.39 10 Click to see details
ESCA -0.02 0.48 -0.103 0.39 10 Click to see details
95 hsa-miR-497-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092955 CYP2U1 cytochrome P450 family 2 subfamily U member 1 2 4
MIRT124568 PRRC2B proline rich coiled-coil 2B 2 2
MIRT125196 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT147296 KPNA2 karyopherin subunit alpha 2 2 8
MIRT163999 KIAA1109 KIAA1109 2 4
MIRT252495 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT357969 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT443007 TRIOBP TRIO and F-actin binding protein 2 2
MIRT443524 NETO1 neuropilin and tolloid like 1 2 2
MIRT443573 EVX2 even-skipped homeobox 2 2 2
MIRT443656 BACH1 BTB domain and CNC homolog 1 2 2
MIRT460670 KRT10 keratin 10 2 8
MIRT464761 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT465032 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT465040 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT468667 SEC62 SEC62 homolog, preprotein translocation factor 2 2
MIRT473694 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT477618 EFNA3 ephrin A3 2 2
MIRT480506 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT480592 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT486915 ZNF398 zinc finger protein 398 2 6
MIRT487770 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT493265 MDFIC MyoD family inhibitor domain containing 2 2
MIRT495271 SLC1A2 solute carrier family 1 member 2 2 4
MIRT495309 CHST12 carbohydrate sulfotransferase 12 2 2
MIRT496681 DPP6 dipeptidyl peptidase like 6 2 4
MIRT496891 FOXP1 forkhead box P1 2 2
MIRT497330 IRF4 interferon regulatory factor 4 2 2
MIRT498272 KIAA1644 KIAA1644 2 2
MIRT498634 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT500581 USP53 ubiquitin specific peptidase 53 2 2
MIRT500751 TMPPE transmembrane protein with metallophosphoesterase domain 2 6
MIRT509668 ZNF354B zinc finger protein 354B 2 10
MIRT510919 PSMA2 proteasome subunit alpha 2 2 4
MIRT519118 CEP76 centrosomal protein 76 2 2
MIRT526193 ABCG2 ATP binding cassette subfamily G member 2 (Junior blood group) 2 2
MIRT526746 HLA-DOB major histocompatibility complex, class II, DO beta 2 2
MIRT527270 FBLN2 fibulin 2 2 2
MIRT528198 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT528330 TBC1D22B TBC1 domain family member 22B 2 2
MIRT530346 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT533627 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT533738 TMEM200C transmembrane protein 200C 2 2
MIRT533779 TMEM133 transmembrane protein 133 2 2
MIRT534317 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT538438 COG5 component of oligomeric golgi complex 5 2 2
MIRT539156 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT539474 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT539620 SHISA9 shisa family member 9 2 2
MIRT539650 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540346 OPHN1 oligophrenin 1 2 2
MIRT540412 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541200 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT541395 CDC27 cell division cycle 27 2 2
MIRT546443 SNX5 sorting nexin 5 2 2
MIRT547369 MSI2 musashi RNA binding protein 2 2 2
MIRT553288 TSPAN3 tetraspanin 3 2 2
MIRT554402 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT557822 FOXN2 forkhead box N2 2 2
MIRT568530 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT569508 THYN1 thymocyte nuclear protein 1 2 2
MIRT570707 FAM69A family with sequence similarity 69 member A 2 2
MIRT608376 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608483 NKTR natural killer cell triggering receptor 2 6
MIRT613533 TRA2B transformer 2 beta homolog 2 2
MIRT616601 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT618166 DUSP18 dual specificity phosphatase 18 2 2
MIRT632059 CEP135 centrosomal protein 135 2 2
MIRT647379 ZDHHC23 zinc finger DHHC-type containing 23 2 2
MIRT648366 POTED POTE ankyrin domain family member D 2 2
MIRT651075 ZNF518B zinc finger protein 518B 2 4
MIRT653618 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653636 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654895 POU2F1 POU class 2 homeobox 1 2 2
MIRT656232 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT659880 CAPRIN1 cell cycle associated protein 1 2 2
MIRT660526 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT666286 SLC30A3 solute carrier family 30 member 3 2 2
MIRT686808 SNX2 sorting nexin 2 2 4
MIRT695302 TK1 thymidine kinase 1 2 2
MIRT699737 SERINC3 serine incorporator 3 2 2
MIRT700794 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT712270 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT712617 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT714264 RPL10A ribosomal protein L10a 2 2
MIRT715072 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715386 TADA3 transcriptional adaptor 3 2 2
MIRT716397 NPAS1 neuronal PAS domain protein 1 2 2
MIRT725328 NFASC neurofascin 2 2
MIRT725503 GANAB glucosidase II alpha subunit 2 2
MIRT732913 IRAK2 interleukin 1 receptor associated kinase 2 3 0
MIRT734890 SMAD3 SMAD family member 3 3 0
MIRT737328 LINC02476 long intergenic non-protein coding RNA 2476 3 0
MIRT737544 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 4 0
MIRT755545 PAK1 p21 (RAC1) activated kinase 1 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-497 Bufalin NULL 9547215 Quantitative real-time PCR colorectal cancer HCT116 cells 24375248 2014 up-regulated
miR-497 Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 up-regulated
miR-497 Ethanol NULL 702 Quantitative real-time PCR CIE10 22141737 2012 up-regulated
miR-497 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 up-regulated
miR-497 Reversine NULL 210332 Microarray C2C12 myoblast cells 24513286 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-497 Tamoxifen 2733525 NSC180973 approved sensitive Low Breast Cancer cell line (MCF-7, T47D)
hsa-mir-497 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-497 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-497 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-497 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-497-3p Mitoxantrone 4212 NSC279836 approved sensitive High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-497-3p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231, MCF-7)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, PC-9)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant Low Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-497-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-497-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant tissue
hsa-miR-497-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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