pre-miRNA Information
pre-miRNA hsa-mir-3152   
Genomic Coordinates chr9: 18573306 - 18573379
Description Homo sapiens miR-3152 stem-loop
Comment Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3152-5p
Sequence 11| AUUGCCUCUGUUCUAACACAAG |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1019691326 2 dbSNP
rs1282676806 8 dbSNP
rs762305650 11 dbSNP
rs1364318615 12 dbSNP
rs556364307 18 dbSNP
rs1002755159 19 dbSNP
rs1238555909 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C1orf115   
Synonyms -
Description chromosome 1 open reading frame 115
Transcript NM_024709   
Expression
Putative miRNA Targets on C1orf115
3'UTR of C1orf115
(miRNA target sites are highlighted)
>C1orf115|NM_024709|3'UTR
   1 TGGGAGCTGCTGTGGCAGGTGCCCCCAGAGTGAACGGGAGCCCCTGCTGTGGGAACTTTGTGAATCCTGGAGCATCTCAG
  81 ACTTGAACACACAGCATATTTGGAAGAGAAAACATGCCTTTCTTTGTTGAATCACATTAGTATGATGAGTGAGTCATCCC
 161 TGCCCATCTGCTGAGCTTCTCACATCTCTCAGTCACACGTGGACCCAGTGGTCAATCCTGCAGAGAATTCGGCGGAGGTT
 241 AGGTTTGGGAGTGGAGCTAGCGTGCTAAAGCCAGAGCCTTCACGTGAAGGTGGCAGGCACTGGGGCGGAAGCCAACACTC
 321 AACAGATGCAAGCAGTGTGGGTGTGCAGCAGAACAGTGATCTTGGGGGAGGAAGAGGATGTTACTAGAGTCAGATGATTT
 401 GCTGTATTCTCCTGAAAGGTCGTAGGCTGACAGGCGCTCACATTCCTTGGCTGCCTCGGTTCTGAGGGCAGCTAAGGAGC
 481 TGTTTATTCCTCAAGTCATGCTCCCCGATCTCCTTCCTCTACCACTCTGTCACCAGGAGTTTAATTACAGGCTTGAGGAG
 561 AAGAAAGGAAGAAAAGATATCTTGATGCTTTGAAAACTGTGTTGGCAGTGTGGCATGACTGTTTAAAGTAGATAAAACCT
 641 TGTCATTTTACCCCATCCCTGCATGACTGTGAAGCTGGCGAGGAAGGAGGAAGAAGGGCAAGTTCAGATGCAGGCTGGGT
 721 GGCTGGGACAGGTTGGCTAAGGGACTACTCTGGAGGGCTCTTCTGCCTGGCATTGCCCACTTCGGCCCAGCCACGTGTTT
 801 GCAGCGACCAGAGTCCCTGCAAAGGTGTGGCTGGCTGTGGTCAGGGTGCTACTAGCACCATCAGCGCACTCCCGCCATTG
 881 GCTCAGCTCCTCTCTGCCAGTCCAACTAAGAGTGCTTTGTCCTGGGTGGGACATAGGGGCTGAGAGAGATGGGGGGAGAC
 961 ATAACACCCAGGAATGAAAATACAGATTTAGAGAAGGAACCAGTAAGTAGGAGACAGATGTGAAGGAAATGGAAATGAGG
1041 CAAGAGGACATTGGAAGAGAGAAGTTTGCTGTCCAGGAGCCAGGTCTGGAGCATCAGTGTGAGGGAGTTCAGGTAGGCTG
1121 GGCCTGTGCCTCTAGGTAGGGACAAGGGAGGCTGGGTAGCCAGGGCTGGTGCTTAAAACCCCTGAGGCCATGAGCTCATT
1201 GGCTGCCTTTGTAGCATCCTGTCTTCTTCTGTGCTGCCTGGTTTGATCTCATCTCACCTGGATTCAAAGGGTAAGGTGGG
1281 CATGGGTCTTGGGCCTGACACCCACCAAGGATGACCTGTGGACTGCCATCGGATGCTGAACAGGGAGATGAAAGGAGGTC
1361 CTCTTACCATACCCCTCTGCCAACCCCCCAGTAGGCCACTGTTCTGACTTTGTTTCCAGAATATCCAGAAATCCAAAGGG
1441 GCTGTTGCTGAACAGTCTGCAGGACCAGTGACAGCACCTACCTGTTGTCCCAAGGCATACAAAGGAGGCCTCAACGCTCA
1521 TGCTTCTCTAATCAAGCCCTACCAAGACAGACAGAAAGACAGACAGAAAAAAGGAAGGGGTAGAGGAGAAGGTTGAAGCT
1601 GTGGAGCTAGACTCTGCTTCACTTCCTGAAGCTTCAACTTCATGTCGAAGATTCACTGGGACCCAATTCCTGCATTGTTA
1681 ATATTTGTGAGGAAAAGTGAAACAAGTGATCTGGTTTTAGCCCAGATGATGAAAGTGGATATGGCACATTTTCACACACG
1761 TGAGATAATTACAGCTTGCCCCACAACACTGGGTGTTGGAGAAAGGGAGAGATAGTCATAAGTGGAAGAAAAAGCCAAGC
1841 ATAGTGAGTGGGAAAGAGAGTGAGAGCCTGTGCAGGCTGCTGACGAGCCCCAGGCAGCCCACAAGTTTCTCGTGGGGAGA
1921 TGGAGGCAGAGCCCAGGGTAGGGGACAGAGCTGCTGGGGCCTTTCCTTGCCTGGGAATCTGTCCCAGGAAGAGCTTCCCC
2001 ACTCCCATCCCCCAAATTGGAAAAACCGTACATTCAAGCCTGTTTGGCCCTGAAATTCTTAAGAATCTGGTTAAGAATTA
2081 ACTCACTAATGTCAAAAGTCAAAACCTCCTAGGGGTTGTCCTGGGAGTCAGGTTCACGGGTACAGAAGATGAATCTCAGA
2161 TGTCACTCAACCTGAGCCGTCATTCTCTGTGGCAGGGCTGCCCTGGGTTTCTCTTACTCAATCCCTGGAGTGTAAGCATT
2241 TGGATTGTGTCACAGATTACCTTTTTACCTTTTCTTTCTTTTTTTTTCTTTTTTTCAATATCAGTGCCCACACCTTACTG
2321 AGTATTGAGTTTTAGAGCTTTCGCTTGATGTGCTTGACCAAGAGACTTCTTTTGTATCCTTTTCTTGTCCTATGATGTAA
2401 ATAAAAGCCTCGATTTATGTAATGTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaacacaAUCUUGUCUCCGUUa 5'
                 |:|||  ||||||| 
Target 5' aaggaaaTGGAAATGAGGCAAg 3'
1023 - 1044 155.00 -12.00
2
miRNA  3' gaaCACAAUCUUGUCUCCGUUa 5'
             |||  : :|::||||||: 
Target 5' ctcGTGGGGAGATGGAGGCAGa 3'
1909 - 1930 139.00 -15.50
3
miRNA  3' gaacacaaucUUGUCUCCGUUa 5'
                    |||||| |||| 
Target 5' gccaacactcAACAGATGCAAg 3'
311 - 332 128.00 -8.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM6541787 1 COSMIC
COSN30451863 3 COSMIC
COSN31508022 5 COSMIC
COSN30449752 7 COSMIC
COSN30521178 16 COSMIC
COSN1098286 21 COSMIC
COSN30476545 25 COSMIC
COSN32064397 29 COSMIC
COSN30530702 40 COSMIC
COSN28201200 52 COSMIC
COSN30182640 54 COSMIC
COSN18714521 62 COSMIC
COSN31503800 70 COSMIC
COSN30148705 79 COSMIC
COSN30544814 95 COSMIC
COSN30171865 103 COSMIC
COSN30494755 107 COSMIC
COSN31494726 121 COSMIC
COSN6024207 143 COSMIC
COSN24821374 208 COSMIC
COSN21943290 271 COSMIC
COSN26826975 329 COSMIC
COSN31960412 825 COSMIC
COSN21775148 889 COSMIC
COSN5798222 984 COSMIC
COSN21616713 1351 COSMIC
COSN20255007 1516 COSMIC
COSN1432688 1541 COSMIC
COSN22512963 2281 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1353529895 2 dbSNP
rs367801580 5 dbSNP
rs980609475 7 dbSNP
rs1369720683 10 dbSNP
rs1184986544 11 dbSNP
rs760664010 15 dbSNP
rs926479482 17 dbSNP
rs147081514 18 dbSNP
rs766336373 19 dbSNP
rs201665116 21 dbSNP
rs759107073 23 dbSNP
rs764610908 24 dbSNP
rs752400954 26 dbSNP
rs1017610067 27 dbSNP
rs758064725 32 dbSNP
rs1308586141 33 dbSNP
rs768049381 35 dbSNP
rs200566159 36 dbSNP
rs35466237 36 dbSNP
rs561183042 37 dbSNP
rs780592720 41 dbSNP
rs749713044 42 dbSNP
rs1251567354 47 dbSNP
rs755119141 47 dbSNP
rs1179866423 49 dbSNP
rs972892555 50 dbSNP
rs529886139 51 dbSNP
rs1333947049 61 dbSNP
rs546844271 62 dbSNP
rs970480014 74 dbSNP
rs981807894 83 dbSNP
rs1041259204 94 dbSNP
rs146983237 97 dbSNP
rs1221306563 107 dbSNP
rs1183605757 119 dbSNP
rs1254845149 127 dbSNP
rs932938420 136 dbSNP
rs538780046 138 dbSNP
rs1277583459 143 dbSNP
rs937666923 150 dbSNP
rs1443880562 158 dbSNP
rs1336031721 175 dbSNP
rs1322288772 185 dbSNP
rs1049881386 197 dbSNP
rs75557296 199 dbSNP
rs1167663374 204 dbSNP
rs1202659036 214 dbSNP
rs1000608540 231 dbSNP
rs1483049707 232 dbSNP
rs568789671 235 dbSNP
rs537455085 237 dbSNP
rs1254424868 241 dbSNP
rs112177573 243 dbSNP
rs1032520898 246 dbSNP
rs1467146592 250 dbSNP
rs73092761 254 dbSNP
rs1378236848 255 dbSNP
rs1328435824 258 dbSNP
rs1009651027 262 dbSNP
rs1350935350 263 dbSNP
rs1467624023 267 dbSNP
rs1273814037 270 dbSNP
rs1438281161 272 dbSNP
rs561577885 284 dbSNP
rs970626750 285 dbSNP
rs1002163575 295 dbSNP
rs1033496850 300 dbSNP
rs1402877865 306 dbSNP
rs1409190124 307 dbSNP
rs945254532 317 dbSNP
rs952534740 320 dbSNP
rs1394229276 323 dbSNP
rs1042259771 324 dbSNP
rs536429830 330 dbSNP
rs1464374249 338 dbSNP
rs1240351218 342 dbSNP
rs1217871896 355 dbSNP
rs984196093 364 dbSNP
rs908621371 367 dbSNP
rs6673306 368 dbSNP
rs778374183 377 dbSNP
rs572995165 379 dbSNP
rs1303475023 383 dbSNP
rs545436633 386 dbSNP
rs11553965 387 dbSNP
rs1287570510 390 dbSNP
rs1005966801 392 dbSNP
rs1402660413 395 dbSNP
rs575560538 399 dbSNP
rs932886027 408 dbSNP
rs1312695359 410 dbSNP
rs1016911708 420 dbSNP
rs1433063847 422 dbSNP
rs544301713 423 dbSNP
rs1427925026 426 dbSNP
rs143715831 436 dbSNP
rs779107556 437 dbSNP
rs1315609806 438 dbSNP
rs926095321 441 dbSNP
rs1236654337 442 dbSNP
rs1208525159 446 dbSNP
rs796468769 447 dbSNP
rs936185886 455 dbSNP
rs370159352 457 dbSNP
rs371084727 459 dbSNP
rs1277157469 470 dbSNP
rs569530010 471 dbSNP
rs1489971603 491 dbSNP
rs1216800527 495 dbSNP
rs1033855779 496 dbSNP
rs1293043335 498 dbSNP
rs906224649 503 dbSNP
rs1377654518 505 dbSNP
rs1313655854 506 dbSNP
rs73092762 507 dbSNP
rs1435188178 508 dbSNP
rs532212155 510 dbSNP
rs1410443429 518 dbSNP
rs914885913 520 dbSNP
rs552211099 523 dbSNP
rs147251098 528 dbSNP
rs531311159 536 dbSNP
rs1448733891 538 dbSNP
rs1180954136 552 dbSNP
rs1169166399 555 dbSNP
rs547908571 557 dbSNP
rs1308592728 558 dbSNP
rs1273028659 564 dbSNP
rs1232009424 571 dbSNP
rs567607062 577 dbSNP
rs1049548028 578 dbSNP
rs1372132397 580 dbSNP
rs1422479863 581 dbSNP
rs745941036 583 dbSNP
rs1371514271 593 dbSNP
rs1292788682 596 dbSNP
rs1005804592 600 dbSNP
rs1162635401 606 dbSNP
rs1462974590 611 dbSNP
rs1391000569 616 dbSNP
rs1418262486 622 dbSNP
rs536593915 644 dbSNP
rs114891890 656 dbSNP
rs113891662 658 dbSNP
rs1038800931 664 dbSNP
rs922591982 666 dbSNP
rs538873572 669 dbSNP
rs1212324466 671 dbSNP
rs1357992079 673 dbSNP
rs1274174814 680 dbSNP
rs1238861883 689 dbSNP
rs558981035 691 dbSNP
rs188550519 693 dbSNP
rs1392198971 709 dbSNP
rs1024509824 715 dbSNP
rs1370284843 722 dbSNP
rs936150982 725 dbSNP
rs1489547818 729 dbSNP
rs1395198106 731 dbSNP
rs1288067864 739 dbSNP
rs907425303 743 dbSNP
rs1451271417 746 dbSNP
rs1365336781 749 dbSNP
rs1203623854 751 dbSNP
rs1159315522 752 dbSNP
rs1453454647 761 dbSNP
rs1392690315 765 dbSNP
rs544578812 768 dbSNP
rs1470209568 769 dbSNP
rs1268750356 784 dbSNP
rs1053689318 785 dbSNP
rs776369586 795 dbSNP
rs1034493527 796 dbSNP
rs57487362 801 dbSNP
rs1347487893 802 dbSNP
rs1301319502 803 dbSNP
rs1010635647 806 dbSNP
rs559921321 807 dbSNP
rs1294695973 809 dbSNP
rs879774051 820 dbSNP
rs1163727878 825 dbSNP
rs1380478401 831 dbSNP
rs1386822000 834 dbSNP
rs531945023 836 dbSNP
rs116041055 841 dbSNP
rs1433692366 853 dbSNP
rs1373301495 855 dbSNP
rs1454283729 857 dbSNP
rs906172330 857 dbSNP
rs1001870893 861 dbSNP
rs1193042328 864 dbSNP
rs1459080290 866 dbSNP
rs1286792543 867 dbSNP
rs977221317 869 dbSNP
rs924446326 871 dbSNP
rs1387507372 874 dbSNP
rs977716489 875 dbSNP
rs1278380584 876 dbSNP
rs1322036329 879 dbSNP
rs888352425 885 dbSNP
rs1269702499 891 dbSNP
rs1225118065 893 dbSNP
rs1328180952 903 dbSNP
rs922523212 905 dbSNP
rs955247739 909 dbSNP
rs1381218581 923 dbSNP
rs761819322 925 dbSNP
rs769170386 927 dbSNP
rs758473682 940 dbSNP
rs1434976138 942 dbSNP
rs1313806121 951 dbSNP
rs998195656 953 dbSNP
rs1323900552 957 dbSNP
rs1165698527 961 dbSNP
rs141472851 966 dbSNP
rs954008729 975 dbSNP
rs1267708146 981 dbSNP
rs941472111 985 dbSNP
rs1330136829 1000 dbSNP
rs1190277000 1008 dbSNP
rs1038446556 1013 dbSNP
rs985435567 1018 dbSNP
rs1272350386 1026 dbSNP
rs918626621 1050 dbSNP
rs337154 1051 dbSNP
rs1045673951 1052 dbSNP
rs1232619314 1056 dbSNP
rs1332350057 1063 dbSNP
rs1294939860 1073 dbSNP
rs907477617 1078 dbSNP
rs545704504 1080 dbSNP
rs1001768438 1091 dbSNP
rs562586184 1094 dbSNP
rs1448268889 1098 dbSNP
rs1334860753 1100 dbSNP
rs1326270656 1101 dbSNP
rs1392554312 1122 dbSNP
rs893289866 1124 dbSNP
rs371457824 1130 dbSNP
rs565588604 1131 dbSNP
rs193241546 1132 dbSNP
rs879062727 1134 dbSNP
rs1167614798 1137 dbSNP
rs1425304922 1138 dbSNP
rs913380063 1143 dbSNP
rs150838453 1155 dbSNP
rs1156749493 1156 dbSNP
rs966417649 1161 dbSNP
rs1457502313 1170 dbSNP
rs1212950169 1184 dbSNP
rs1160646184 1187 dbSNP
rs999205638 1191 dbSNP
rs1274794764 1195 dbSNP
rs1029310929 1208 dbSNP
rs1228737213 1215 dbSNP
rs1349685787 1222 dbSNP
rs955299630 1237 dbSNP
rs1277345908 1239 dbSNP
rs337153 1248 dbSNP
rs546853948 1249 dbSNP
rs1324678607 1255 dbSNP
rs774168060 1259 dbSNP
rs981816350 1271 dbSNP
rs1392993195 1273 dbSNP
rs761080353 1276 dbSNP
rs1382017539 1281 dbSNP
rs1328341826 1283 dbSNP
rs1406251625 1284 dbSNP
rs927704123 1288 dbSNP
rs1157001113 1294 dbSNP
rs911080662 1295 dbSNP
rs543126174 1299 dbSNP
rs1351269938 1300 dbSNP
rs962571824 1303 dbSNP
rs1193148251 1311 dbSNP
rs1230479778 1312 dbSNP
rs868209976 1327 dbSNP
rs764524313 1331 dbSNP
rs139303801 1332 dbSNP
rs776828709 1357 dbSNP
rs748593195 1361 dbSNP
rs1036963261 1373 dbSNP
rs867336113 1374 dbSNP
rs1210965969 1376 dbSNP
rs997977266 1387 dbSNP
rs1256498859 1390 dbSNP
rs754287197 1397 dbSNP
rs539200668 1412 dbSNP
rs1437838745 1416 dbSNP
rs558919728 1432 dbSNP
rs1250799751 1437 dbSNP
rs1421732121 1438 dbSNP
rs889853357 1453 dbSNP
rs1173252120 1463 dbSNP
rs1452591133 1464 dbSNP
rs144442301 1466 dbSNP
rs538001905 1479 dbSNP
rs957425018 1491 dbSNP
rs79758674 1502 dbSNP
rs1056040109 1503 dbSNP
rs1195136106 1513 dbSNP
rs146117059 1516 dbSNP
rs1279082744 1523 dbSNP
rs1011757131 1532 dbSNP
rs1349360927 1538 dbSNP
rs1278754597 1544 dbSNP
rs981595686 1552 dbSNP
rs534201644 1556 dbSNP
rs927470857 1557 dbSNP
rs554082904 1568 dbSNP
rs1402161228 1575 dbSNP
rs1341531078 1578 dbSNP
rs577094112 1581 dbSNP
rs1433127227 1583 dbSNP
rs140194598 1593 dbSNP
rs909505909 1598 dbSNP
rs941039219 1599 dbSNP
rs902283523 1612 dbSNP
rs1417377964 1613 dbSNP
rs1188212265 1614 dbSNP
rs1477992705 1622 dbSNP
rs1256571629 1625 dbSNP
rs1185300697 1626 dbSNP
rs1486473922 1627 dbSNP
rs184813132 1628 dbSNP
rs1037332813 1642 dbSNP
rs999259286 1647 dbSNP
rs186575018 1648 dbSNP
rs890790392 1661 dbSNP
rs1007258274 1673 dbSNP
rs1018193941 1675 dbSNP
rs1221023664 1676 dbSNP
rs933936943 1679 dbSNP
rs750553554 1692 dbSNP
rs962912431 1694 dbSNP
rs576186377 1703 dbSNP
rs1381690997 1704 dbSNP
rs1303497488 1714 dbSNP
rs1025407220 1722 dbSNP
rs1352850482 1727 dbSNP
rs1172671691 1728 dbSNP
rs1466109507 1733 dbSNP
rs1006920224 1734 dbSNP
rs951487453 1738 dbSNP
rs981477018 1739 dbSNP
rs1303586398 1749 dbSNP
rs893084728 1754 dbSNP
rs1176277767 1760 dbSNP
rs1479341369 1761 dbSNP
rs75023424 1766 dbSNP
rs1202948085 1772 dbSNP
rs1201038713 1776 dbSNP
rs1273587907 1783 dbSNP
rs937352549 1787 dbSNP
rs1207081618 1789 dbSNP
rs775522467 1800 dbSNP
rs367621013 1804 dbSNP
rs1272931245 1807 dbSNP
rs1244597880 1810 dbSNP
rs991867554 1814 dbSNP
rs561461497 1818 dbSNP
rs747240063 1819 dbSNP
rs1041933649 1822 dbSNP
rs1426682358 1823 dbSNP
rs1448152821 1839 dbSNP
rs903340296 1842 dbSNP
rs1003167019 1843 dbSNP
rs1168546734 1860 dbSNP
rs1393722775 1861 dbSNP
rs1391372415 1868 dbSNP
rs935103311 1871 dbSNP
rs1431995464 1885 dbSNP
rs116117776 1886 dbSNP
rs1157860245 1893 dbSNP
rs958868810 1897 dbSNP
rs1416978059 1902 dbSNP
rs12030411 1903 dbSNP
rs560824290 1905 dbSNP
rs909650824 1912 dbSNP
rs143875364 1913 dbSNP
rs1208593327 1914 dbSNP
rs1295302749 1932 dbSNP
rs1018328654 1942 dbSNP
rs754713961 1944 dbSNP
rs1363140581 1954 dbSNP
rs1266438130 1955 dbSNP
rs552734562 1970 dbSNP
rs898430154 1981 dbSNP
rs368005225 1987 dbSNP
rs534980915 1990 dbSNP
rs1296739021 2002 dbSNP
rs1342841706 2008 dbSNP
rs918275083 2011 dbSNP
rs569306329 2016 dbSNP
rs1050996920 2019 dbSNP
rs1391139000 2028 dbSNP
rs781095556 2029 dbSNP
rs911018296 2036 dbSNP
rs1362139080 2046 dbSNP
rs1221879661 2048 dbSNP
rs951207732 2052 dbSNP
rs1392748537 2059 dbSNP
rs1247908342 2068 dbSNP
rs942548901 2069 dbSNP
rs538452763 2071 dbSNP
rs1268471226 2074 dbSNP
rs1054922919 2090 dbSNP
rs374676097 2091 dbSNP
rs1463137831 2116 dbSNP
rs748027854 2118 dbSNP
rs1288350194 2124 dbSNP
rs769806898 2128 dbSNP
rs1249178380 2137 dbSNP
rs981527837 2138 dbSNP
rs1035747159 2140 dbSNP
rs1235292517 2144 dbSNP
rs1161760506 2145 dbSNP
rs1294576673 2150 dbSNP
rs1380245255 2160 dbSNP
rs1342156416 2168 dbSNP
rs959015741 2171 dbSNP
rs1433750168 2173 dbSNP
rs1373065885 2175 dbSNP
rs568592434 2180 dbSNP
rs914541197 2183 dbSNP
rs1468019811 2186 dbSNP
rs1167209872 2196 dbSNP
rs1386773827 2201 dbSNP
rs1477015825 2204 dbSNP
rs1265829181 2208 dbSNP
rs1194613802 2216 dbSNP
rs111282191 2219 dbSNP
rs1434432756 2220 dbSNP
rs764134274 2222 dbSNP
rs1003093464 2232 dbSNP
rs183677892 2233 dbSNP
rs1309861939 2244 dbSNP
rs1345812900 2245 dbSNP
rs1365833782 2248 dbSNP
rs1317892855 2249 dbSNP
rs1250632491 2254 dbSNP
rs188395816 2266 dbSNP
rs958837486 2267 dbSNP
rs1282164014 2269 dbSNP
rs1355420181 2270 dbSNP
rs1006402865 2275 dbSNP
rs1016872880 2279 dbSNP
rs1413766602 2279 dbSNP
rs1326712057 2281 dbSNP
rs772572669 2283 dbSNP
rs748756279 2288 dbSNP
rs3170629 2289 dbSNP
rs80128325 2290 dbSNP
rs770594397 2298 dbSNP
rs774080163 2299 dbSNP
rs1426200264 2303 dbSNP
rs1232909754 2310 dbSNP
rs972932255 2311 dbSNP
rs1186072630 2314 dbSNP
rs1237220592 2317 dbSNP
rs554246279 2319 dbSNP
rs1473311327 2334 dbSNP
rs890892063 2340 dbSNP
rs14850 2343 dbSNP
rs1443025499 2344 dbSNP
rs11553966 2357 dbSNP
rs986639176 2359 dbSNP
rs1459075678 2360 dbSNP
rs898140376 2370 dbSNP
rs911153873 2373 dbSNP
rs76573932 2374 dbSNP
rs1046961097 2375 dbSNP
rs576120490 2377 dbSNP
rs1159918125 2378 dbSNP
rs75257712 2380 dbSNP
rs1035910921 2386 dbSNP
rs1332079635 2393 dbSNP
rs75110474 2397 dbSNP
rs1445192127 2398 dbSNP
rs1403168449 2401 dbSNP
rs1013406491 2413 dbSNP
rs1021663076 2419 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaacacaaucUUGUCUCCGUUa 5'
                    ||  ||||||| 
Target 5' ----------AAAUGAGGCAAg 3'
1 - 12
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaacacaaucuugUCUCC-GUua 5'
                       ||||| ||  
Target 5' ------------aAGAGGACAuu 3'
1 - 11
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000294889.5 | 3UTR | AAAUGAGGCAAGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000294889.5 | 3UTR | AAGAGGACAUUGGAAGAGAGAAGUUUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-3152-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092535 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT461731 NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 2 2
MIRT468456 SET SET nuclear proto-oncogene 2 2
MIRT482192 AHR aryl hydrocarbon receptor 2 2
MIRT507923 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT512208 C18orf25 chromosome 18 open reading frame 25 2 6
MIRT526238 STARD4 StAR related lipid transfer domain containing 4 2 2
MIRT536131 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT536280 LIMA1 LIM domain and actin binding 1 2 2
MIRT544251 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT548054 GOLGA7 golgin A7 2 2
MIRT563443 ISCA1 iron-sulfur cluster assembly 1 2 2
MIRT565643 SIX4 SIX homeobox 4 2 2
MIRT614870 PDE12 phosphodiesterase 12 2 2
MIRT614923 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT615793 FAM124A family with sequence similarity 124 member A 2 2
MIRT618557 VLDLR very low density lipoprotein receptor 2 2
MIRT622147 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT622390 RSBN1 round spermatid basic protein 1 2 2
MIRT624185 DDX19B DEAD-box helicase 19B 2 2
MIRT624448 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625340 TAPBP TAP binding protein 2 2
MIRT625370 IRGQ immunity related GTPase Q 2 2
MIRT627276 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT627746 RAD54L2 RAD54 like 2 2 2
MIRT629578 RFC2 replication factor C subunit 2 2 4
MIRT630537 LGALS8 galectin 8 2 4
MIRT630559 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT630568 SOWAHA sosondowah ankyrin repeat domain family member A 2 4
MIRT630763 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT635424 LRP10 LDL receptor related protein 10 2 2
MIRT636011 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636337 PHAX phosphorylated adaptor for RNA export 2 2
MIRT638413 POU3F2 POU class 3 homeobox 2 2 2
MIRT639358 INIP INTS3 and NABP interacting protein 2 2
MIRT642124 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A 2 4
MIRT642828 KIAA0319 KIAA0319 2 2
MIRT644017 NUCB1 nucleobindin 1 2 2
MIRT644038 WWC2 WW and C2 domain containing 2 2 2
MIRT644153 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644649 SNX9 sorting nexin 9 2 2
MIRT645798 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT647633 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT648528 KIAA1143 KIAA1143 2 2
MIRT648851 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648880 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT650777 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT654200 RNF19B ring finger protein 19B 2 2
MIRT654508 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT655249 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656089 MTA3 metastasis associated 1 family member 3 2 2
MIRT656599 LRRC55 leucine rich repeat containing 55 2 2
MIRT659194 CYBB cytochrome b-245 beta chain 2 2
MIRT660000 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT661715 KLF8 Kruppel like factor 8 2 2
MIRT661813 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT668360 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT679734 CABP4 calcium binding protein 4 2 2
MIRT708616 NUDT18 nudix hydrolase 18 2 2
MIRT709034 TROVE2 TROVE domain family member 2 2 2
MIRT709573 DMGDH dimethylglycine dehydrogenase 2 2
MIRT709665 AJAP1 adherens junctions associated protein 1 2 2
MIRT709874 TRAF1 TNF receptor associated factor 1 2 2
MIRT710821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT710883 PARL presenilin associated rhomboid like 2 2
MIRT711547 LCAT lecithin-cholesterol acyltransferase 2 2
MIRT712017 STX1B syntaxin 1B 2 2
MIRT713058 BLVRA biliverdin reductase A 2 2
MIRT713129 THRB thyroid hormone receptor beta 2 2
MIRT713878 MOB3A MOB kinase activator 3A 2 2
MIRT714154 NXPH3 neurexophilin 3 2 2
MIRT719755 FLYWCH1 FLYWCH-type zinc finger 1 2 2
MIRT720213 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT722728 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT725652 ABI2 abl interactor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)

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