pre-miRNA Information
pre-miRNA hsa-mir-4446   
Genomic Coordinates chr3: 113594876 - 113594942
Description Homo sapiens miR-4446 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4446-5p
Sequence 8| AUUUCCCUGCCAUUCCCUUGGC |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1356015605 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BTBD3   
Synonyms dJ742J24.1
Description BTB domain containing 3
Transcript NM_014962   
Other Transcripts NM_181443   
Expression
Putative miRNA Targets on BTBD3
3'UTR of BTBD3
(miRNA target sites are highlighted)
>BTBD3|NM_014962|3'UTR
   1 AAACTCACTTCCTGAAGCAGCTTGAGCTCCAAAGTGCACATCTGGTTCCAACTTGCCTGATGCTTAGCTCATCTGCAAAT
  81 ATGTGATCAGTGCCGGTAATTTGTAATGAATGAAGCGGTAGGCAGGTTCTAATTTCTTTTAACCTTTTAATTATGTACAG
 161 GCAAAAATGCAGCATTCCGCTTTTAACTATCTGCTTAAAAGAGCTAACGTTCTTATTAAGGCTTTGTGGTTTTTAGAGTT
 241 GCATCTATGAACCTGGGGAGATTATGTGCTTTCCCAAGCGTTCCACCACCCTCTCAGTTTTGTCCCTCTGAAGATAATTT
 321 TGGATCACCTTGAATTTCCTTTTGGACGTTATTTGATGAACAGAAATAAAGTGATAACAAGAGTTATTTTTAAACAGAAC
 401 TCCTCTTACCCCCCAAAACAGATAAACCTCAGTGTACAATTTTGAAAGAAGTTTTGCCTTGTAATGAGTAATAATTTAGA
 481 AAGTAGACAGTGGTTGTGTTTGGCTCTCGTTTTATTCCTTTTACATTTGTTGCTTCTGGGATTTAAAAAATTACTAAATT
 561 CATAAGATAGTTAGGTATTAAACACTTCAGAATATCAATGTAAAATTGGAAAATAAGGAACTGGGGGCATTTGTTTAGGC
 641 CATGACTTCTACAAGCAGATTTCTTTTCTTTTAGTTTAGAAGACAAAAAATTTCAATACAGATACTTCTTTTAGAAGTAA
 721 ATTTTTAGATTTTATTGTCAGTAGAAAAAAGTTAAACTCCTACTAATTTAAACTAAGACAGTTTAAAAAGGAAGCCTGAA
 801 AAAGACTCATACTACAAATAATTTAATTGATGGCATATAAGAATATGCAGTTTGAAAAAGCCAAACTCTTCTCTCCACTT
 881 AGCTTTTGATCCCCACTGTTTGCTTATTTGTATAAGTCATACTGTGTAGAATTTCTATTTTCTTTTTCCCCATTAAAAGA
 961 GGACCAAACAATTCTTTATACAAATGGAGTAGCAACTAGTTTTGTAGCACTACATTTAATGTAATGAGATACCTTTGTTC
1041 ATTTTTTTAAATTTGAAATATACTTTACCTGATCCACTTTGATTGTATACTATATTCTTTGTTAATTTTAATTTTGTCCT
1121 GTTCCTAGACTGCTAGAATCTGGCCCCTGGCCATCTTAAAGTGCCAACATATGCCTGCAGGGTTTATAAAAAATGGCCTG
1201 GAGTGACACATTTTATTATACCTAATATTCACTGCATCAGTATCACATCTAGCTCCCTTACTTGTCCACAGATAATGTAA
1281 ACAAAGGAGGGAAAAACTTATTAAATTCTCCTTCGCTGCTGGCTTGTGCTGGTTTAGTGCCTGTGTCCCTGGCAGTGTCC
1361 AGTGTGTTCACTTCCAGTTGAAGTATCCATGTGTTTCTGGGCAGCTTTTCTGCTCAGTGTGATCCTGAGATGGCTTCCCC
1441 GCCGCCACCCAGAGTGTGGTCCTTGGCCGCCTCCTGCTCCTGCTCTGCAAGCCTGAAACTGGCTTGTCTGGAGCCAGGAG
1521 TTAGTCCTGGGGTGTGTGTGTGCCTGCGCACCCATGCGCATGCAAGTGTGTTTGCCAGCTCAGGAGCTGTCTCCTCTCTA
1601 CCTGGCTAGTAAGAGGTGGGACAGTAATGGTCCTCCTGCTGGCCCCAGCAAGGCCCATGAGTGACTGCCCTGACGTATTC
1681 ACTGTGCCTCTGGGCCACTTCTTCCCCTGTAGATGTGGGCTTGTTGCCTTCAGCCGGCTTCCCTGAGGGAGGAGAACACT
1761 GGATTATTGGAAATGTTTTAATCACTCTTGCCATTACCTACATCTATTAGCATAGATGATGAAAAGCTGTTACTGGTGAT
1841 TATAGATGAGTATTTCCAGGACAACGTTCTAAAAGTACAATTATTTCTTATTGGGGAGATTACAGGTAGTTTGGCAAAGC
1921 ATTGAAGTACAAAGGTACATTTTCAATTAAAAAGCACACTTCTACAAAAGATTTGGTTTTTAAATTATGGTTACACATTT
2001 CAGTAACTCATAGCTGCTGTGCAAATTGGTAGACCTTATAAGAAGGCACTTGTTTGTAAGCCAGAGAAGAAACTTTAATT
2081 GCATCCTATCAGATTGTTGAGGTGGGTGTGATAGTCTTCAGGTGCAGTGCGTTCATTCACTAACGCTCACTGTCAGTGCC
2161 CATGTTTGCTAGCTGCCTCCATGTGACTAGTGAGCTGCTGGTGAAAGTCGTGTGAAATCCTGTACACTGTGTATAGAATA
2241 ATGTAATTTTATGTTAATTGTTATTACTTTAAAACATATCTACCATCTGATTGGCTGGTACCGAGAGCTGTGGGTAAAAT
2321 TTGAAAATTGTATTTAGAATAAGAAATTTTACATTTTAAACCCTATTGTCCTTTATGCATTTTCAATGAAATGGAATGAA
2401 GGCTAATATGCTTGCTTTATTTACTTTTGTAATCTTGGATTTTGTAGCTTTTAAAACTAGAAACCATTGTTCTAACAAAG
2481 CAGGCAACTTTATTCTATAAACACAACTTTATTAAGCAGAATACACTGTAGATGCTTTTCCCCAACGTATCTGGCTGGCA
2561 GTCTTTGTCGTTGTTCATTCTGGGGATAAAGGGGAACTAGGCTAGCAGTTCTAATGTGACATTCTTTAAGCATATCTTAA
2641 AATAGTATTTAAGTAAATGGTCTAATTTCTACATAATTATTGCACTGAACTTTTTTGTTTATTAAGGTGTTTAAATAAGC
2721 TCAGCTAATTCAAGACACTGTAGCCACTTGTGCATCAGTGTGCTTGAATTTAGTAGCTTACAGCATTATTTATGAAGGAA
2801 AAAATACATAAATATGAAGTACCTCATGTTGAATGTTATTGTACTGTATTTTTAATGTAACAGTGCAGATCTTGTTAGAC
2881 ACATGAATGTGTATAATCATGTTAAATGCAAATAAAACTAGTTCATAGAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgguucccUUACCGUCCCUUUa 5'
                  || || ||||||| 
Target 5' atgtaaacAAAGG-AGGGAAAa 3'
1275 - 1295 149.00 -10.60
2
miRNA  3' cgguuCCCUUACCGUCCCUUUa 5'
               |||:||   ||||:|| 
Target 5' attctGGGGAT-AAAGGGGAAc 3'
2577 - 2597 136.00 -15.30
3
miRNA  3' cgguucccuUAC-CGUCCCUUUa 5'
                   |||  |||| ||| 
Target 5' cttttaattATGTACAGGCAAAa 3'
144 - 166 117.00 -5.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30506562 17 COSMIC
COSN30502898 54 COSMIC
COSN30499705 64 COSMIC
COSN26968149 69 COSMIC
COSN30185678 84 COSMIC
COSN31587996 93 COSMIC
COSN30191254 95 COSMIC
COSN30493628 117 COSMIC
COSN26556092 127 COSMIC
COSN28890703 181 COSMIC
COSN32222329 346 COSMIC
COSN7996488 790 COSMIC
COSN30176210 975 COSMIC
COSN25263536 1053 COSMIC
COSN26570404 1329 COSMIC
COSN31592841 1455 COSMIC
COSN26509199 1466 COSMIC
COSN31536640 1558 COSMIC
COSN32056809 1564 COSMIC
COSN32056810 1565 COSMIC
COSN8610468 1612 COSMIC
COSN15450346 1696 COSMIC
COSN21639546 1744 COSMIC
COSN31540624 1787 COSMIC
COSN31517845 1971 COSMIC
COSN26786558 2026 COSMIC
COSN31529167 2067 COSMIC
COSN8610469 2091 COSMIC
COSN31523420 2128 COSMIC
COSN31544271 2163 COSMIC
COSN28201683 2207 COSMIC
COSN8610470 2498 COSMIC
COSN31515817 2516 COSMIC
COSN26549086 2548 COSMIC
COSN28808438 2654 COSMIC
COSN28708205 2745 COSMIC
COSN31513612 2923 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1285877592 5 dbSNP
rs1353718164 6 dbSNP
rs1207318633 9 dbSNP
rs753613291 10 dbSNP
rs754738694 15 dbSNP
rs778055011 19 dbSNP
rs751775370 25 dbSNP
rs1260709542 27 dbSNP
rs757375882 28 dbSNP
rs781378759 30 dbSNP
rs1234469714 31 dbSNP
rs1336248705 31 dbSNP
rs745963702 39 dbSNP
rs770365306 40 dbSNP
rs563583438 41 dbSNP
rs1163015517 45 dbSNP
rs1232241725 49 dbSNP
rs749658717 52 dbSNP
rs768958178 53 dbSNP
rs577174858 60 dbSNP
rs372478761 66 dbSNP
rs937856861 66 dbSNP
rs1380354672 71 dbSNP
rs1384135073 73 dbSNP
rs974155979 78 dbSNP
rs1260911722 88 dbSNP
rs1055785303 89 dbSNP
rs545439586 95 dbSNP
rs41280292 96 dbSNP
rs1041738160 107 dbSNP
rs930530994 117 dbSNP
rs183602481 118 dbSNP
rs1193231274 120 dbSNP
rs1270075299 127 dbSNP
rs983732730 132 dbSNP
rs907800725 134 dbSNP
rs537037507 136 dbSNP
rs1033692285 140 dbSNP
rs143062965 155 dbSNP
rs561389646 168 dbSNP
rs1018671808 170 dbSNP
rs1478181249 171 dbSNP
rs1169912677 172 dbSNP
rs1271619044 173 dbSNP
rs965819668 178 dbSNP
rs530243995 179 dbSNP
rs186941780 180 dbSNP
rs1323962876 188 dbSNP
rs1461021445 190 dbSNP
rs1397336229 193 dbSNP
rs1460415508 195 dbSNP
rs1295030253 198 dbSNP
rs1365931622 199 dbSNP
rs1404161424 202 dbSNP
rs1280960006 205 dbSNP
rs112568123 209 dbSNP
rs77304410 210 dbSNP
rs893256328 219 dbSNP
rs1194720633 224 dbSNP
rs1455965073 227 dbSNP
rs538926915 235 dbSNP
rs1294252122 241 dbSNP
rs1192442497 244 dbSNP
rs1010413319 248 dbSNP
rs775202030 253 dbSNP
rs1193648660 254 dbSNP
rs1338358523 255 dbSNP
rs1280760942 256 dbSNP
rs1224465296 257 dbSNP
rs561963900 264 dbSNP
rs907469901 265 dbSNP
rs1302638251 266 dbSNP
rs1442881405 274 dbSNP
rs917327388 278 dbSNP
rs1490281326 280 dbSNP
rs551790718 281 dbSNP
rs1034299800 284 dbSNP
rs867047037 289 dbSNP
rs1370262587 291 dbSNP
rs1265605334 313 dbSNP
rs1437024516 314 dbSNP
rs1310519226 316 dbSNP
rs958730824 324 dbSNP
rs6134402 340 dbSNP
rs974123562 344 dbSNP
rs16992793 348 dbSNP
rs951936061 349 dbSNP
rs534762195 351 dbSNP
rs1417499066 358 dbSNP
rs983324039 362 dbSNP
rs907725818 367 dbSNP
rs1425678918 370 dbSNP
rs6033261 372 dbSNP
rs1385851030 373 dbSNP
rs191415084 375 dbSNP
rs1054675140 379 dbSNP
rs1279353445 379 dbSNP
rs1224216219 383 dbSNP
rs889374289 384 dbSNP
rs1281347964 387 dbSNP
rs1007724908 392 dbSNP
rs557828476 400 dbSNP
rs901575624 404 dbSNP
rs1416886826 405 dbSNP
rs1362003924 406 dbSNP
rs993276884 412 dbSNP
rs1431045119 417 dbSNP
rs931639097 419 dbSNP
rs1287738653 423 dbSNP
rs1359211311 428 dbSNP
rs1472004459 429 dbSNP
rs1417974708 431 dbSNP
rs1054173293 434 dbSNP
rs368826666 449 dbSNP
rs1484496120 454 dbSNP
rs1256527360 462 dbSNP
rs1216321035 465 dbSNP
rs951724209 467 dbSNP
rs892900644 473 dbSNP
rs984868440 486 dbSNP
rs1316327696 497 dbSNP
rs1033590641 508 dbSNP
rs946182549 510 dbSNP
rs537258594 515 dbSNP
rs1359440511 529 dbSNP
rs1293987976 533 dbSNP
rs959319379 536 dbSNP
rs991933345 552 dbSNP
rs1041871065 555 dbSNP
rs917777095 557 dbSNP
rs756642148 562 dbSNP
rs1003071092 563 dbSNP
rs557163357 568 dbSNP
rs577845668 568 dbSNP
rs1034600474 571 dbSNP
rs1457183912 573 dbSNP
rs147299646 575 dbSNP
rs1166547665 577 dbSNP
rs376037202 599 dbSNP
rs1412672341 601 dbSNP
rs546102868 613 dbSNP
rs1476243029 616 dbSNP
rs41280294 620 dbSNP
rs951480402 627 dbSNP
rs1243612408 631 dbSNP
rs1054893228 637 dbSNP
rs1468869773 643 dbSNP
rs754164483 652 dbSNP
rs910788341 655 dbSNP
rs1004735686 657 dbSNP
rs1014754822 658 dbSNP
rs758231143 660 dbSNP
rs1401112024 673 dbSNP
rs966311582 681 dbSNP
rs1268804284 684 dbSNP
rs975957997 691 dbSNP
rs1395942630 692 dbSNP
rs1327298364 699 dbSNP
rs1459459500 700 dbSNP
rs1348819319 710 dbSNP
rs1170661694 711 dbSNP
rs1411305038 715 dbSNP
rs1417053740 721 dbSNP
rs1187759832 722 dbSNP
rs921854662 725 dbSNP
rs182539488 729 dbSNP
rs901976370 743 dbSNP
rs1449576854 745 dbSNP
rs993666494 746 dbSNP
rs541378456 747 dbSNP
rs1336824248 750 dbSNP
rs1205420887 755 dbSNP
rs1047447409 758 dbSNP
rs1451123971 760 dbSNP
rs887534274 760 dbSNP
rs1228186693 762 dbSNP
rs1372337486 776 dbSNP
rs1306210134 779 dbSNP
rs1312151131 780 dbSNP
rs1366209607 782 dbSNP
rs1351826288 795 dbSNP
rs1443904913 796 dbSNP
rs186536576 809 dbSNP
rs373983851 820 dbSNP
rs377445708 824 dbSNP
rs879129276 829 dbSNP
rs755300828 836 dbSNP
rs1432525404 841 dbSNP
rs530791651 842 dbSNP
rs1266748998 845 dbSNP
rs549992658 851 dbSNP
rs1204324909 858 dbSNP
rs1481725301 861 dbSNP
rs1249955951 869 dbSNP
rs1204733783 870 dbSNP
rs945803072 874 dbSNP
rs1349000473 882 dbSNP
rs6134403 883 dbSNP
rs1041892076 885 dbSNP
rs1033805086 890 dbSNP
rs928815126 896 dbSNP
rs1307078241 919 dbSNP
rs1370692323 923 dbSNP
rs1392665466 923 dbSNP
rs1460787955 928 dbSNP
rs1181642197 929 dbSNP
rs1415049834 932 dbSNP
rs563525682 937 dbSNP
rs938852788 938 dbSNP
rs1465483335 942 dbSNP
rs1364357256 948 dbSNP
rs1055936380 950 dbSNP
rs1420908102 953 dbSNP
rs894742318 957 dbSNP
rs370246204 961 dbSNP
rs995740298 975 dbSNP
rs1409890032 980 dbSNP
rs1181648698 981 dbSNP
rs1024851813 982 dbSNP
rs780013230 996 dbSNP
rs191362041 997 dbSNP
rs887143872 998 dbSNP
rs1199164819 1000 dbSNP
rs1483190945 1003 dbSNP
rs1261875425 1021 dbSNP
rs957709601 1028 dbSNP
rs1004300008 1038 dbSNP
rs990164303 1039 dbSNP
rs1287160694 1042 dbSNP
rs910588785 1049 dbSNP
rs943357434 1050 dbSNP
rs1020119991 1055 dbSNP
rs1176456831 1070 dbSNP
rs1357050391 1071 dbSNP
rs1360324176 1077 dbSNP
rs965835515 1078 dbSNP
rs1385435794 1081 dbSNP
rs563310165 1087 dbSNP
rs1404759127 1089 dbSNP
rs1290517970 1090 dbSNP
rs1040608753 1093 dbSNP
rs1386473449 1098 dbSNP
rs923533556 1105 dbSNP
rs1475655051 1119 dbSNP
rs1420343511 1124 dbSNP
rs1185838648 1125 dbSNP
rs997364918 1126 dbSNP
rs182290688 1128 dbSNP
rs1207338446 1137 dbSNP
rs929460531 1139 dbSNP
rs1266936835 1144 dbSNP
rs1048388386 1145 dbSNP
rs1336470298 1147 dbSNP
rs1028892039 1148 dbSNP
rs1006419639 1150 dbSNP
rs1054891500 1151 dbSNP
rs953256997 1158 dbSNP
rs1369945452 1164 dbSNP
rs1432792504 1166 dbSNP
rs768384629 1174 dbSNP
rs990500785 1176 dbSNP
rs779064242 1183 dbSNP
rs914234857 1189 dbSNP
rs188989720 1196 dbSNP
rs1457594453 1200 dbSNP
rs1321468489 1201 dbSNP
rs967487836 1222 dbSNP
rs1195848858 1236 dbSNP
rs1275017684 1241 dbSNP
rs977156955 1243 dbSNP
rs1248006179 1251 dbSNP
rs1194833510 1252 dbSNP
rs1469390266 1253 dbSNP
rs1287139101 1257 dbSNP
rs752943829 1265 dbSNP
rs1203485482 1275 dbSNP
rs1252851484 1288 dbSNP
rs374719287 1294 dbSNP
rs548133747 1300 dbSNP
rs916110474 1301 dbSNP
rs1032629006 1302 dbSNP
rs931559966 1304 dbSNP
rs1443053347 1314 dbSNP
rs568083261 1315 dbSNP
rs549921969 1316 dbSNP
rs1321681302 1318 dbSNP
rs957468926 1321 dbSNP
rs1049163505 1327 dbSNP
rs3177118 1329 dbSNP
rs1479169019 1343 dbSNP
rs372158571 1344 dbSNP
rs964682469 1345 dbSNP
rs1455979294 1353 dbSNP
rs1244463051 1355 dbSNP
rs1169148804 1364 dbSNP
rs1397767370 1370 dbSNP
rs1409922535 1373 dbSNP
rs754795073 1376 dbSNP
rs1327227812 1378 dbSNP
rs1482582697 1381 dbSNP
rs1280783040 1386 dbSNP
rs1236325546 1396 dbSNP
rs778031000 1403 dbSNP
rs747037118 1412 dbSNP
rs1041107767 1414 dbSNP
rs1232691798 1417 dbSNP
rs557224678 1419 dbSNP
rs771007315 1421 dbSNP
rs570648146 1431 dbSNP
rs1343940138 1435 dbSNP
rs539788490 1441 dbSNP
rs983632110 1442 dbSNP
rs909339259 1443 dbSNP
rs1213947096 1444 dbSNP
rs1416652143 1451 dbSNP
rs996955745 1452 dbSNP
rs1171457719 1454 dbSNP
rs1470153883 1455 dbSNP
rs1270843130 1469 dbSNP
rs193138723 1470 dbSNP
rs1179485814 1472 dbSNP
rs888985313 1473 dbSNP
rs1223036179 1475 dbSNP
rs1212837434 1477 dbSNP
rs1440609909 1478 dbSNP
rs1277773872 1481 dbSNP
rs781209931 1485 dbSNP
rs573060856 1498 dbSNP
rs73251144 1500 dbSNP
rs554929456 1504 dbSNP
rs1226783729 1508 dbSNP
rs1350176190 1517 dbSNP
rs1294260781 1519 dbSNP
rs1450690913 1524 dbSNP
rs1489728863 1529 dbSNP
rs967034047 1529 dbSNP
rs1194638935 1532 dbSNP
rs1401801000 1532 dbSNP
rs1373183097 1535 dbSNP
rs949044293 1536 dbSNP
rs1474820354 1546 dbSNP
rs977503338 1547 dbSNP
rs185260038 1548 dbSNP
rs1387692826 1549 dbSNP
rs189993070 1558 dbSNP
rs999883518 1559 dbSNP
rs1236688654 1563 dbSNP
rs959771152 1566 dbSNP
rs1363878440 1567 dbSNP
rs1270088575 1578 dbSNP
rs1206951373 1582 dbSNP
rs1328728162 1585 dbSNP
rs1273990960 1587 dbSNP
rs991234208 1588 dbSNP
rs143306736 1590 dbSNP
rs1377342859 1603 dbSNP
rs893590148 1629 dbSNP
rs1006741050 1631 dbSNP
rs931486587 1636 dbSNP
rs1456204879 1637 dbSNP
rs964817020 1652 dbSNP
rs1166393747 1656 dbSNP
rs1443009965 1658 dbSNP
rs1403262301 1668 dbSNP
rs984356114 1670 dbSNP
rs1186958558 1671 dbSNP
rs561848075 1675 dbSNP
rs192828827 1676 dbSNP
rs1295309267 1677 dbSNP
rs908801217 1687 dbSNP
rs1361511076 1690 dbSNP
rs1464466007 1691 dbSNP
rs1253708392 1693 dbSNP
rs768255108 1696 dbSNP
rs984071343 1697 dbSNP
rs1320199530 1699 dbSNP
rs1290792105 1706 dbSNP
rs115988629 1715 dbSNP
rs1344904856 1716 dbSNP
rs1206499866 1719 dbSNP
rs1262057594 1721 dbSNP
rs528754494 1724 dbSNP
rs1190478090 1728 dbSNP
rs1245434000 1736 dbSNP
rs990977235 1737 dbSNP
rs865997915 1738 dbSNP
rs1294836133 1744 dbSNP
rs1433852042 1752 dbSNP
rs1348987765 1757 dbSNP
rs901202484 1768 dbSNP
rs916313235 1771 dbSNP
rs949177299 1772 dbSNP
rs1046037763 1774 dbSNP
rs1425937840 1775 dbSNP
rs547904284 1781 dbSNP
rs1159343981 1782 dbSNP
rs1246393157 1784 dbSNP
rs902142184 1785 dbSNP
rs1484204234 1787 dbSNP
rs1272950769 1789 dbSNP
rs527825946 1790 dbSNP
rs1228295834 1792 dbSNP
rs1349326480 1795 dbSNP
rs1302731169 1802 dbSNP
rs568031453 1807 dbSNP
rs1366321329 1809 dbSNP
rs184241988 1812 dbSNP
rs1338799463 1813 dbSNP
rs1212529190 1819 dbSNP
rs1384845939 1829 dbSNP
rs550689399 1838 dbSNP
rs1307242001 1841 dbSNP
rs1006713693 1847 dbSNP
rs1379340043 1857 dbSNP
rs888911803 1862 dbSNP
rs1178297422 1864 dbSNP
rs1431459958 1865 dbSNP
rs1043926 1867 dbSNP
rs1183095559 1871 dbSNP
rs900582863 1872 dbSNP
rs766873180 1873 dbSNP
rs201771724 1879 dbSNP
rs754360078 1881 dbSNP
rs1030420320 1892 dbSNP
rs1258238283 1896 dbSNP
rs1208684708 1897 dbSNP
rs553106567 1899 dbSNP
rs1311032480 1900 dbSNP
rs564535993 1902 dbSNP
rs1229834352 1907 dbSNP
rs1348309202 1915 dbSNP
rs566683470 1919 dbSNP
rs535726674 1921 dbSNP
rs570003619 1926 dbSNP
rs983485908 1927 dbSNP
rs1016917016 1931 dbSNP
rs1300967480 1938 dbSNP
rs1183484962 1939 dbSNP
rs1465498878 1940 dbSNP
rs1241885253 1947 dbSNP
rs1421247466 1963 dbSNP
rs963686291 1968 dbSNP
rs990945981 1974 dbSNP
rs1035311964 1975 dbSNP
rs533434241 1979 dbSNP
rs1181761835 1982 dbSNP
rs550468612 1985 dbSNP
rs1424724647 1993 dbSNP
rs774532390 1996 dbSNP
rs1451927127 1998 dbSNP
rs1258704524 2007 dbSNP
rs1178631630 2013 dbSNP
rs1406884162 2021 dbSNP
rs970877253 2023 dbSNP
rs991160365 2025 dbSNP
rs1268198318 2040 dbSNP
rs981786518 2041 dbSNP
rs1326614502 2047 dbSNP
rs1267042978 2054 dbSNP
rs554708121 2066 dbSNP
rs11538873 2074 dbSNP
rs1341984005 2080 dbSNP
rs923731152 2084 dbSNP
rs934961142 2086 dbSNP
rs1469402936 2088 dbSNP
rs574490440 2097 dbSNP
rs1321279944 2102 dbSNP
rs1458846328 2103 dbSNP
rs1386588638 2107 dbSNP
rs1158623447 2108 dbSNP
rs150914246 2109 dbSNP
rs1370547127 2122 dbSNP
rs984716135 2131 dbSNP
rs908736102 2132 dbSNP
rs557044234 2145 dbSNP
rs1191079564 2146 dbSNP
rs1463130385 2150 dbSNP
rs1334751490 2153 dbSNP
rs1226221519 2158 dbSNP
rs576892803 2161 dbSNP
rs1284847189 2162 dbSNP
rs1323592688 2165 dbSNP
rs977034585 2176 dbSNP
rs546101519 2178 dbSNP
rs932640113 2183 dbSNP
rs1263424957 2209 dbSNP
rs1049806995 2210 dbSNP
rs1243860645 2210 dbSNP
rs1342641128 2211 dbSNP
rs1432820372 2221 dbSNP
rs1481914942 2222 dbSNP
rs1196701812 2227 dbSNP
rs915341258 2232 dbSNP
rs947216905 2234 dbSNP
rs1393192785 2239 dbSNP
rs6134404 2240 dbSNP
rs1457676237 2241 dbSNP
rs1391201335 2242 dbSNP
rs1417749149 2246 dbSNP
rs1448265612 2252 dbSNP
rs886555460 2258 dbSNP
rs758716655 2265 dbSNP
rs536061705 2273 dbSNP
rs139242556 2279 dbSNP
rs999176802 2280 dbSNP
rs1016307239 2281 dbSNP
rs1208906684 2282 dbSNP
rs1480150342 2286 dbSNP
rs1174372856 2290 dbSNP
rs963589728 2291 dbSNP
rs542498503 2296 dbSNP
rs188180690 2303 dbSNP
rs1298490829 2304 dbSNP
rs1395463674 2312 dbSNP
rs149989511 2313 dbSNP
rs1304566872 2319 dbSNP
rs1451276177 2329 dbSNP
rs776054550 2331 dbSNP
rs1404571559 2353 dbSNP
rs1371495358 2355 dbSNP
rs1022648767 2363 dbSNP
rs923671425 2366 dbSNP
rs956503441 2372 dbSNP
rs1173701058 2374 dbSNP
rs1478704482 2375 dbSNP
rs1375435032 2385 dbSNP
rs1197654404 2386 dbSNP
rs952552586 2387 dbSNP
rs1298589526 2393 dbSNP
rs1309740578 2394 dbSNP
rs1202806026 2395 dbSNP
rs1228758990 2408 dbSNP
rs74547344 2415 dbSNP
rs1202138532 2417 dbSNP
rs1482273046 2425 dbSNP
rs1225276722 2427 dbSNP
rs914881029 2434 dbSNP
rs942348665 2439 dbSNP
rs1223131715 2454 dbSNP
rs1351381225 2457 dbSNP
rs1290575636 2458 dbSNP
rs1408337383 2461 dbSNP
rs1335582930 2479 dbSNP
rs1335368292 2482 dbSNP
rs1416670578 2496 dbSNP
rs1399420716 2501 dbSNP
rs751696208 2511 dbSNP
rs757410198 2512 dbSNP
rs976961396 2513 dbSNP
rs1421777770 2514 dbSNP
rs1179592258 2522 dbSNP
rs761012649 2525 dbSNP
rs922528181 2526 dbSNP
rs180793564 2528 dbSNP
rs1440686041 2540 dbSNP
rs1276554110 2541 dbSNP
rs758251183 2546 dbSNP
rs533039839 2547 dbSNP
rs769516095 2548 dbSNP
rs946775940 2550 dbSNP
rs1304744180 2555 dbSNP
rs1350341379 2568 dbSNP
rs1005002357 2570 dbSNP
rs546514019 2570 dbSNP
rs1339264531 2571 dbSNP
rs1365760766 2573 dbSNP
rs1335460515 2580 dbSNP
rs566651782 2582 dbSNP
rs1038198064 2584 dbSNP
rs899132763 2586 dbSNP
rs1291472601 2591 dbSNP
rs1156415516 2599 dbSNP
rs1399765282 2600 dbSNP
rs1414235606 2605 dbSNP
rs1363428931 2623 dbSNP
rs1012219908 2633 dbSNP
rs1471758011 2646 dbSNP
rs1236781526 2648 dbSNP
rs550631023 2650 dbSNP
rs868855518 2653 dbSNP
rs1465352942 2665 dbSNP
rs1207047098 2669 dbSNP
rs1340671844 2682 dbSNP
rs144269543 2685 dbSNP
rs764453117 2687 dbSNP
rs1290993917 2691 dbSNP
rs1230432757 2698 dbSNP
rs1292983678 2702 dbSNP
rs924402041 2704 dbSNP
rs1354708318 2707 dbSNP
rs1358942208 2712 dbSNP
rs1229792844 2722 dbSNP
rs3171277 2738 dbSNP
rs1219606335 2739 dbSNP
rs6660 2745 dbSNP
rs1429584600 2749 dbSNP
rs1031205763 2757 dbSNP
rs1056951701 2758 dbSNP
rs1486226746 2766 dbSNP
rs568771951 2782 dbSNP
rs1186071890 2784 dbSNP
rs1247278886 2786 dbSNP
rs1403350499 2799 dbSNP
rs1447608907 2799 dbSNP
rs1169082982 2802 dbSNP
rs1451319910 2803 dbSNP
rs895758561 2808 dbSNP
rs1012811562 2817 dbSNP
rs1485651014 2820 dbSNP
rs537062822 2823 dbSNP
rs6104808 2824 dbSNP
rs1022073555 2827 dbSNP
rs1206477603 2828 dbSNP
rs879648507 2829 dbSNP
rs1294739998 2834 dbSNP
rs185458260 2840 dbSNP
rs1162247282 2844 dbSNP
rs1213426446 2849 dbSNP
rs1367734250 2860 dbSNP
rs963681353 2861 dbSNP
rs1346669588 2870 dbSNP
rs1005709700 2884 dbSNP
rs1015343538 2892 dbSNP
rs1433870792 2896 dbSNP
rs1453774995 2898 dbSNP
rs1364722909 2914 dbSNP
rs1308484142 2916 dbSNP
rs1431520282 2918 dbSNP
rs1368679972 2919 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgguucccUUACCGUCCCUUUa 5'
                  || || ||||||| 
Target 5' --------AAAGG-AGGGAAAa 3'
1 - 13
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_014962 | 3UTR | GCUCCCUUACUUGUCCACAGAUAAUGUAAACAAAGGAGGGAAAAACUUAUUAAAUUCUCCUUCGCUGCUGGCUUGUGCUGGUUUAGUGCCUGUGUCCCUGGCAGUGUCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_181443 | 3UTR | AGCUCCCUUACUUGUCCACAGAUAAUGUAAACAAAGGAGGGAAAAACUUAUUAAAUUCUCCUUCGCUGCUGGCUUGUGCUGGUUUAGUGCCUGUGUCCCUGGCAGUGUCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_181443 | 3UTR | AGGGAAAAACUUAUUAAAUUCUCCUUCGCUGCUGGCUUGUGCUGGUUUAGUGCCUGUGUCCCUGGCAGUGUCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_014962 | 3UTR | AGAUAAUGUAAACAAAGGAGGGAAAAACUUAUUAAAUUCUCCUUCGCUGCUGGCUUGUGCUGGUUUAGUGCCUGUGUCCCUGGCAGUGUCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_014962 | 3UTR | AAAGGAGGGAAAAACUUAUUAAAUUCUCCUUCGCUGCUGGCUUGUGCUGGUUUAGUGCCUGUGUCCCUGGCAGUGUCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_014962 | 3UTR | AACAAAGGAGGGAAAAACUUAUUAAAUUCUCCUUCGCUGCUGGCUUGUGCUGGUUUAGUGCCUGUGUCCCUGGCAGUGUCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000254977.3 | 3UTR | AAAGGAGGGAAAAACUUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
223 hsa-miR-4446-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT078060 PCTP phosphatidylcholine transfer protein 2 2
MIRT099072 FOXC1 forkhead box C1 2 2
MIRT130186 TXNIP thioredoxin interacting protein 2 2
MIRT148786 NARS asparaginyl-tRNA synthetase 2 2
MIRT261965 SEPHS1 selenophosphate synthetase 1 2 2
MIRT345867 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT409087 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT451883 SOD2 superoxide dismutase 2 2 4
MIRT469236 RHOB ras homolog family member B 2 2
MIRT469435 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT483055 FOXB1 forkhead box B1 2 8
MIRT484640 TBC1D5 TBC1 domain family member 5 2 6
MIRT493106 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT497307 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 2 2
MIRT497798 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT501273 SCARB2 scavenger receptor class B member 2 2 4
MIRT506756 KMT2D lysine methyltransferase 2D 2 2
MIRT511986 EEF2 eukaryotic translation elongation factor 2 2 4
MIRT513126 ZNF431 zinc finger protein 431 2 2
MIRT519733 ZNF394 zinc finger protein 394 2 4
MIRT520351 UBE2K ubiquitin conjugating enzyme E2 K 2 4
MIRT520542 TPPP tubulin polymerization promoting protein 2 8
MIRT530782 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 2
MIRT531112 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT532144 GALNT8 polypeptide N-acetylgalactosaminyltransferase 8 2 2
MIRT533208 WAPAL WAPL cohesin release factor 2 2
MIRT533419 TWF1 twinfilin actin binding protein 1 2 2
MIRT534063 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT534288 SLAIN2 SLAIN motif family member 2 2 2
MIRT537796 EFNB2 ephrin B2 2 2
MIRT538017 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT538058 DMD dystrophin 2 2
MIRT538132 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT538680 CCDC80 coiled-coil domain containing 80 2 2
MIRT538788 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT542762 PPAP2B phospholipid phosphatase 3 2 2
MIRT546861 RAB10 RAB10, member RAS oncogene family 2 4
MIRT547418 MED4 mediator complex subunit 4 2 4
MIRT551633 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT552329 ZNF704 zinc finger protein 704 2 2
MIRT556124 MFSD9 major facilitator superfamily domain containing 9 2 4
MIRT559290 ATXN1 ataxin 1 2 2
MIRT562125 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563777 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 2 2
MIRT564430 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT566102 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT567126 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 2
MIRT571213 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT571939 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT571967 KIF21A kinesin family member 21A 2 2
MIRT606792 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 8
MIRT607351 TNS1 tensin 1 2 4
MIRT609416 GJB7 gap junction protein beta 7 2 4
MIRT609522 AZI2 5-azacytidine induced 2 2 4
MIRT611218 FAM174B family with sequence similarity 174 member B 2 2
MIRT611385 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT612053 KLB klotho beta 2 4
MIRT612102 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT612146 SIX1 SIX homeobox 1 2 4
MIRT612488 SIX3 SIX homeobox 3 2 4
MIRT613685 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613763 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT613876 FGD1 FYVE, RhoGEF and PH domain containing 1 2 2
MIRT613965 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 4
MIRT614894 PAPOLG poly(A) polymerase gamma 2 2
MIRT614912 NFIA nuclear factor I A 2 2
MIRT615013 ERGIC2 ERGIC and golgi 2 2 2
MIRT615106 BCL7A BCL tumor suppressor 7A 2 2
MIRT615242 FAM227A family with sequence similarity 227 member A 2 4
MIRT615695 NEGR1 neuronal growth regulator 1 2 2
MIRT615956 ERBB3 erb-b2 receptor tyrosine kinase 3 2 4
MIRT615979 FSTL4 follistatin like 4 2 2
MIRT616053 PTPRE protein tyrosine phosphatase, receptor type E 2 4
MIRT616073 TBX2 T-box 2 2 4
MIRT616234 NPAS3 neuronal PAS domain protein 3 2 2
MIRT616306 CELF2 CUGBP Elav-like family member 2 2 2
MIRT616474 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT616662 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT616887 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 2 2
MIRT616902 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT617025 SYT6 synaptotagmin 6 2 2
MIRT617162 SLC16A5 solute carrier family 16 member 5 2 2
MIRT617318 DPF3 double PHD fingers 3 2 2
MIRT617792 CHRM2 cholinergic receptor muscarinic 2 2 2
MIRT618418 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 2 2
MIRT618663 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT620212 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620413 TFDP3 transcription factor Dp family member 3 2 2
MIRT620667 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620709 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT620956 SFT2D2 SFT2 domain containing 2 2 2
MIRT621225 LMAN1 lectin, mannose binding 1 2 2
MIRT621333 SLC11A1 solute carrier family 11 member 1 2 2
MIRT621696 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT623484 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623777 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT624215 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT624675 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT627369 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT628252 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT630790 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT635631 PRR15L proline rich 15 like 2 2
MIRT636425 MARCH1 membrane associated ring-CH-type finger 1 2 2
MIRT637295 ACTN2 actinin alpha 2 2 2
MIRT637345 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT637842 SLC2A9 solute carrier family 2 member 9 2 2
MIRT638327 RCAN1 regulator of calcineurin 1 2 2
MIRT638375 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638751 EPHA4 EPH receptor A4 2 2
MIRT638965 ARHGAP6 Rho GTPase activating protein 6 2 2
MIRT639094 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT639172 CEP70 centrosomal protein 70 2 2
MIRT639254 SLC38A1 solute carrier family 38 member 1 2 4
MIRT639368 ZCCHC24 zinc finger CCHC-type containing 24 2 4
MIRT639504 CACNA1G calcium voltage-gated channel subunit alpha1 G 2 2
MIRT639644 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT640486 EXOC5 exocyst complex component 5 2 2
MIRT641424 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT641550 LIPG lipase G, endothelial type 2 2
MIRT642180 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT642656 RGS6 regulator of G protein signaling 6 2 2
MIRT642873 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT643355 TRIM10 tripartite motif containing 10 2 2
MIRT643531 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT643998 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644105 PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 2 2
MIRT644421 VDR vitamin D receptor 2 2
MIRT644481 SLFN12 schlafen family member 12 2 2
MIRT644573 SPOP speckle type BTB/POZ protein 2 2
MIRT645354 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT645383 FBLIM1 filamin binding LIM protein 1 2 2
MIRT645758 SURF6 surfeit 6 2 2
MIRT646060 VANGL2 VANGL planar cell polarity protein 2 2 2
MIRT646194 DUSP10 dual specificity phosphatase 10 2 2
MIRT647915 RGS5 regulator of G protein signaling 5 2 2
MIRT649216 AMMECR1L AMMECR1 like 2 2
MIRT649265 C17orf64 chromosome 17 open reading frame 64 2 2
MIRT649522 GTF3C3 general transcription factor IIIC subunit 3 2 2
MIRT649605 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650392 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT650835 SEMA4G semaphorin 4G 2 2
MIRT651273 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT651674 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT651763 VASP vasodilator stimulated phosphoprotein 2 2
MIRT652250 TPD52L3 tumor protein D52 like 3 2 2
MIRT652277 TOM1L2 target of myb1 like 2 membrane trafficking protein 2 2
MIRT652316 TNFSF15 TNF superfamily member 15 2 2
MIRT652342 TMOD3 tropomodulin 3 2 2
MIRT652373 TMEM57 transmembrane protein 57 2 2
MIRT652438 TMEM236 transmembrane protein 236 2 2
MIRT652723 TGFB2 transforming growth factor beta 2 2 2
MIRT652752 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653310 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT653327 SMIM18 small integral membrane protein 18 2 2
MIRT653406 SLC7A2 solute carrier family 7 member 2 2 2
MIRT653512 SLC41A1 solute carrier family 41 member 1 2 2
MIRT653912 SERPINC1 serpin family C member 1 2 2
MIRT654111 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654153 RORB RAR related orphan receptor B 2 2
MIRT654548 RAB14 RAB14, member RAS oncogene family 2 2
MIRT654920 POLR3D RNA polymerase III subunit D 2 2
MIRT655169 PHF19 PHD finger protein 19 2 2
MIRT655412 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT655784 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT655836 NGDN neuroguidin 2 2
MIRT656079 MTA3 metastasis associated 1 family member 3 2 2
MIRT656404 MCTP1 multiple C2 and transmembrane domain containing 1 2 2
MIRT656720 LMLN leishmanolysin like peptidase 2 2
MIRT656774 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT656922 KIAA1462 junctional cadherin 5 associated 2 2
MIRT657004 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT657477 HCAR2 hydroxycarboxylic acid receptor 2 2 2
MIRT657539 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657911 GCC1 GRIP and coiled-coil domain containing 1 2 2
MIRT658478 EXOC8 exocyst complex component 8 2 2
MIRT658612 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT658823 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT658965 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT659706 CCDC93 coiled-coil domain containing 93 2 2
MIRT660034 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT660108 BTBD3 BTB domain containing 3 2 2
MIRT660697 AMOTL2 angiomotin like 2 2 2
MIRT660763 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660884 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT660956 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661217 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT661596 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661624 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662430 EID2 EP300 interacting inhibitor of differentiation 2 2 2
MIRT664816 NOX5 NADPH oxidase 5 2 2
MIRT665548 UCHL5 ubiquitin C-terminal hydrolase L5 2 2
MIRT665815 TMEM161B transmembrane protein 161B 2 2
MIRT666668 RBM23 RNA binding motif protein 23 2 2
MIRT667995 HCFC2 host cell factor C2 2 2
MIRT668064 GPR180 G protein-coupled receptor 180 2 2
MIRT669056 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT669637 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT699368 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699882 RUNX1 runt related transcription factor 1 2 2
MIRT703834 ETV3 ETS variant 3 2 2
MIRT708528 ZNF177 zinc finger protein 177 2 2
MIRT709696 DMWD DM1 locus, WD repeat containing 2 2
MIRT710381 PARD6G par-6 family cell polarity regulator gamma 2 2
MIRT710639 GLUL glutamate-ammonia ligase 2 2
MIRT711584 SETD1A SET domain containing 1A 2 2
MIRT713208 FAM13A family with sequence similarity 13 member A 2 2
MIRT714129 IL20RB interleukin 20 receptor subunit beta 2 2
MIRT714204 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT714733 CCNO cyclin O 2 2
MIRT714761 ZNF462 zinc finger protein 462 2 2
MIRT715624 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715755 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT716075 RNF150 ring finger protein 150 2 2
MIRT716179 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT717450 RWDD2A RWD domain containing 2A 2 2
MIRT717866 CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 2 2
MIRT720964 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT721564 SLC5A12 solute carrier family 5 member 12 2 2
MIRT722348 BAG2 BCL2 associated athanogene 2 2 2
MIRT723235 BTLA B and T lymphocyte associated 2 2
MIRT724018 LMBRD2 LMBR1 domain containing 2 2 2
MIRT724507 KLHL5 kelch like family member 5 2 2
MIRT725478 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4446 Aed Therapy sensitive High Epilepsy tissue
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-4446 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-4446 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-4446 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-4446-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4446-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4446-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4446-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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