pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BMPR1A   
Synonyms 10q23del, ACVRLK3, ALK3, CD292, SKR5
Description bone morphogenetic protein receptor type 1A
Transcript NM_004329   
Expression
Putative miRNA Targets on BMPR1A
3'UTR of BMPR1A
(miRNA target sites are highlighted)
>BMPR1A|NM_004329|3'UTR
   1 TGGTTAAACCATCGGAGGAGAAACTCTAGACTGCAAGAACTGTTTTTACCCATGGCATGGGTGGAATTAGAGTGGAATAA
  81 GGATGTTAACTTGGTTCTCAGACTCTTTCTTCACTACGTGTTCACAGGCTGCTAATATTAAACCTTTCAGTACTCTTATT
 161 AGGATACAAGCTGGGAACTTCTAAACACTTCATTCTTTATATATGGACAGCTTTATTTTAAATGTGGTTTTTGATGCCTT
 241 TTTTTAAGTGGGTTTTTATGAACTGCATCAAGACTTCAATCCTGATTAGTGTCTCCAGTCAAGCTCTGGGTACTGAATTG
 321 CCTGTTCATAAAACGGTGCTTTCTGTGAAAGCCTTAAGAAGATAAATGAGCGCAGCAGAGATGGAGAAATAGACTTTGCC
 401 TTTTACCTGAGACATTCAGTTCGTTTGTATTCTACCTTTGTAAAACAGCCTATAGATGATGATGTGTTTGGGATACTGCT
 481 TATTTTATGATAGTTTGTCCTGTGTCCTTAGTGATGTGTGTGTGTCTCCATGCACATGCACGCCGGGATTCCTCTGCTGC
 561 CATTTGAATTAGAAGAAAATAATTTATATGCATGCACAGGAAGATATTGGTGGCCGGTGGTTTTGTGCTTTAAAAATGCA
 641 ATATCTGACCAAGATTCGCCAATCTCATACAAGCCATTTACTTTGCAAGTGAGATAGCTTCCCCACCAGCTTTATTTTTT
 721 AACATGAAAGCTGATGCCAAGGCCAAAAGAAGTTTAAAGCATCTGTAAATTTGGACTGTTTTCCTTCAACCACCATTTTT
 801 TTTGTGGTTATTATTTTTGTCACGGAAAGCATCCTCTCCAAAGTTGGAGCTTCTATTGCCATGAACCATGCTTACAAAGA
 881 AAGCACTTCTTATTGAAGTGAATTCCTGCATTTGATAGCAATGTAAGTGCCTATAACCATGTTCTATATTCTTTATTCTC
 961 AGTAACTTTTAAAAGGGAAGTTATTTATATTTTGTGTATAATGTGCTTTATTTGCAAATCACCCACTCCTTTACAACCAT
1041 ACTTTATATATGTACATACATTCATACTGTAGAAACCAGCTCATGTGTACCTCATATCCCATCCTTAAGAGAAGAAATGT
1121 TATAAAGTAGAACTAAATATAAATTTTCAGAATTAATGCATTCAAAGTAATATATCAAATCCAGGACTTTGTTAACTTCA
1201 GGTAAAAACTTCATTAGGGTAATATCATCTCAATTTTTTCAAATGAAAGGATTCTCTAATTAGAAATTTATATGTCAGAG
1281 CTGTTATAAATTTATCAACTGTCAAATATGTTCTGGACAGCTAAATCATTTGAGATTTTTGGTTTTTTGATTTCTATTCC
1361 CTAACTTGTGAAGACAATGAAAAATCAGGCAGAAATATTTAGTATCTAGTCAGTATCTGTAGCTACACTGTATAACTGTT
1441 CTTCAATAAAATGGTTCATATTTTATAGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuAGGGUAGGGGUCCUUGGgg 5'
             |:|:||: ||| |||||  
Target 5' agcTTCTATTGCCATGAACCat 3'
848 - 869 123.00 -16.90
2
miRNA  3' uuUAGGGUAGGGGUCCUUGGGg 5'
            || | |   |::|||||:: 
Target 5' ggATACAA--GCTGGGAACTTc 3'
162 - 181 116.00 -13.80
3
miRNA  3' uuUA-GGGUA---GGGGUCCUUGGGg 5'
            || | |||   | ||:||| :|| 
Target 5' ccATGCACATGCACGCCGGGATTCCt 3'
528 - 553 112.00 -16.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
925636 2 ClinVar
233754 3 ClinVar
630429 8 ClinVar
490974 12 ClinVar
490975 14 ClinVar
921301 15 ClinVar
379803 18 ClinVar
301354 43 ClinVar
301355 48 ClinVar
301356 68 ClinVar
1206482 84 ClinVar
301357 86 ClinVar
301358 322 ClinVar
877547 336 ClinVar
301359 423 ClinVar
301360 488 ClinVar
301361 543 ClinVar
878572 546 ClinVar
878573 642 ClinVar
878574 655 ClinVar
879167 663 ClinVar
301362 665 ClinVar
301363 747 ClinVar
301364 765 ClinVar
879168 870 ClinVar
301365 887 ClinVar
301366 894 ClinVar
301367 947 ClinVar
880367 1057 ClinVar
880368 1195 ClinVar
301368 1225 ClinVar
301369 1343 ClinVar
301370 1350 ClinVar
301371 1427 ClinVar
COSN31530984 9 COSMIC
COSN30462854 14 COSMIC
COSN26967930 15 COSMIC
COSN31559253 38 COSMIC
COSN31592856 240 COSMIC
COSN31559527 254 COSMIC
COSN25587804 317 COSMIC
COSN26562698 367 COSMIC
COSN31483088 372 COSMIC
COSN21300994 503 COSMIC
COSN31608413 585 COSMIC
COSN20092157 747 COSMIC
COSN1505379 908 COSMIC
COSN20092158 947 COSMIC
COSN31991166 1608 COSMIC
COSN17336049 1626 COSMIC
COSN23906465 2021 COSMIC
COSN25404663 2283 COSMIC
COSN8724652 2342 COSMIC
COSN21164349 2452 COSMIC
COSN1505380 2494 COSMIC
COSN7073672 2509 COSMIC
COSN22285037 2935 COSMIC
COSN21165002 3135 COSMIC
COSN5254808 3657 COSMIC
COSN5864752 3768 COSMIC
COSN16550956 3788 COSMIC
COSN21806705 3874 COSMIC
rs188512985 2200 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs876660618 3 dbSNP
rs892267131 10 dbSNP
rs770781608 12 dbSNP
rs773995160 14 dbSNP
rs760997608 15 dbSNP
rs1318358297 16 dbSNP
rs574861235 18 dbSNP
rs370244873 31 dbSNP
rs1213852775 36 dbSNP
rs1377459606 42 dbSNP
rs530912809 43 dbSNP
rs753218854 43 dbSNP
rs886047361 43 dbSNP
rs762000074 44 dbSNP
rs1481051555 45 dbSNP
rs1007165718 47 dbSNP
rs765343731 47 dbSNP
rs542274831 48 dbSNP
rs759017830 49 dbSNP
rs763323289 50 dbSNP
rs1445358551 52 dbSNP
rs1282064916 58 dbSNP
rs1348292702 59 dbSNP
rs1302457446 63 dbSNP
rs560698193 68 dbSNP
rs1366853034 71 dbSNP
rs963454000 77 dbSNP
rs973137037 82 dbSNP
rs563960199 84 dbSNP
rs531153431 86 dbSNP
rs1435929437 92 dbSNP
rs1175466338 94 dbSNP
rs532701420 98 dbSNP
rs1433630918 107 dbSNP
rs982972333 114 dbSNP
rs564532488 118 dbSNP
rs1474462505 119 dbSNP
rs528153826 121 dbSNP
rs1189935425 133 dbSNP
rs1485932766 154 dbSNP
rs546310624 160 dbSNP
rs1208381978 165 dbSNP
rs867645246 196 dbSNP
rs1384239609 200 dbSNP
rs926607175 252 dbSNP
rs1316625725 266 dbSNP
rs1294551521 268 dbSNP
rs1355319694 278 dbSNP
rs567850101 288 dbSNP
rs1311600227 299 dbSNP
rs1364948196 301 dbSNP
rs1355543663 307 dbSNP
rs1169986234 308 dbSNP
rs936677665 310 dbSNP
rs1306278648 319 dbSNP
rs546449017 322 dbSNP
rs1165681364 324 dbSNP
rs1232706182 325 dbSNP
rs1261512108 328 dbSNP
rs182970149 335 dbSNP
rs1185798745 336 dbSNP
rs1203644052 357 dbSNP
rs1481485205 364 dbSNP
rs550209042 372 dbSNP
rs945191268 373 dbSNP
rs1051573791 374 dbSNP
rs1195418597 376 dbSNP
rs1251125495 385 dbSNP
rs1233294430 401 dbSNP
rs890364652 414 dbSNP
rs7078571 415 dbSNP
rs1374478757 418 dbSNP
rs186843872 423 dbSNP
rs1440490806 424 dbSNP
rs557901682 430 dbSNP
rs1326828678 433 dbSNP
rs1460980565 441 dbSNP
rs572977334 448 dbSNP
rs1415845205 453 dbSNP
rs1451109414 455 dbSNP
rs534009025 456 dbSNP
rs994930468 468 dbSNP
rs1388283125 473 dbSNP
rs1462357842 480 dbSNP
rs886047362 488 dbSNP
rs1176355749 489 dbSNP
rs1479539258 491 dbSNP
rs1254491257 502 dbSNP
rs1369496765 507 dbSNP
rs1467625486 515 dbSNP
rs1198107201 521 dbSNP
rs1386252437 522 dbSNP
rs779581065 522 dbSNP
rs1307744801 525 dbSNP
rs1337635414 526 dbSNP
rs1237084280 528 dbSNP
rs950550961 531 dbSNP
rs1317991973 532 dbSNP
rs1306928608 536 dbSNP
rs553485620 542 dbSNP
rs575024211 543 dbSNP
rs1440506479 545 dbSNP
rs12773754 546 dbSNP
rs1290658304 553 dbSNP
rs1345647631 576 dbSNP
rs1158384836 579 dbSNP
rs1417070714 585 dbSNP
rs1396714687 586 dbSNP
rs1193850676 590 dbSNP
rs1453386211 593 dbSNP
rs1250771860 594 dbSNP
rs542239856 597 dbSNP
rs1335220886 600 dbSNP
rs563533465 608 dbSNP
rs1271161368 616 dbSNP
rs1485909508 617 dbSNP
rs1260643060 618 dbSNP
rs1350474736 626 dbSNP
rs1304679508 629 dbSNP
rs1234049470 642 dbSNP
rs1488092061 652 dbSNP
rs575853350 655 dbSNP
rs1382845664 657 dbSNP
rs970889878 658 dbSNP
rs1288197063 663 dbSNP
rs886047363 665 dbSNP
rs1377239367 670 dbSNP
rs1416792738 671 dbSNP
rs1433880525 672 dbSNP
rs1375498862 683 dbSNP
rs1180642789 690 dbSNP
rs1418201862 697 dbSNP
rs1428578509 698 dbSNP
rs1475729252 713 dbSNP
rs1167606879 725 dbSNP
rs1392780691 731 dbSNP
rs546195510 738 dbSNP
rs1457802732 740 dbSNP
rs61856965 747 dbSNP
rs980987938 760 dbSNP
rs1398645773 762 dbSNP
rs564673436 764 dbSNP
rs150762162 765 dbSNP
rs546831287 770 dbSNP
rs1235404755 775 dbSNP
rs1306965014 777 dbSNP
rs113275265 778 dbSNP
rs1293477780 779 dbSNP
rs1313410346 796 dbSNP
rs71477621 796 dbSNP
rs1413934165 802 dbSNP
rs1291153659 817 dbSNP
rs1169261382 820 dbSNP
rs1320900641 824 dbSNP
rs1372177648 825 dbSNP
rs1167857922 831 dbSNP
rs1205047992 833 dbSNP
rs1475905719 835 dbSNP
rs867899400 848 dbSNP
rs1258823877 850 dbSNP
rs1187946796 856 dbSNP
rs561446290 862 dbSNP
rs1196780325 863 dbSNP
rs1203877111 869 dbSNP
rs913973227 870 dbSNP
rs1475963659 871 dbSNP
rs1335624664 875 dbSNP
rs1293814324 876 dbSNP
rs1185380412 877 dbSNP
rs149499991 887 dbSNP
rs1405985216 893 dbSNP
rs200051592 894 dbSNP
rs550122995 904 dbSNP
rs1330592836 907 dbSNP
rs1171715562 912 dbSNP
rs1395236851 919 dbSNP
rs945497014 935 dbSNP
rs1051542866 941 dbSNP
rs890246657 944 dbSNP
rs61856966 947 dbSNP
rs568777714 950 dbSNP
rs184126826 957 dbSNP
rs1307450591 970 dbSNP
rs551367714 973 dbSNP
rs1416791070 988 dbSNP
rs1311294715 990 dbSNP
rs899101829 997 dbSNP
rs1378161955 1005 dbSNP
rs1468947572 1015 dbSNP
rs566789983 1023 dbSNP
rs994501040 1027 dbSNP
rs1354109117 1029 dbSNP
rs1281226253 1037 dbSNP
rs1239498716 1039 dbSNP
rs1335011795 1047 dbSNP
rs1026434417 1049 dbSNP
rs886187795 1056 dbSNP
rs1013976124 1057 dbSNP
rs1280363195 1060 dbSNP
rs1486376508 1084 dbSNP
rs533962494 1085 dbSNP
rs1324583086 1100 dbSNP
rs1403114738 1107 dbSNP
rs71473287 1111 dbSNP
rs1236608593 1124 dbSNP
rs1024070259 1134 dbSNP
rs376257308 1140 dbSNP
rs1483114515 1150 dbSNP
rs1454841935 1160 dbSNP
rs555645183 1165 dbSNP
rs529954660 1177 dbSNP
rs970859027 1191 dbSNP
rs546825674 1195 dbSNP
rs371136967 1204 dbSNP
rs1264332223 1205 dbSNP
rs1286246224 1206 dbSNP
rs1448146089 1207 dbSNP
rs535962114 1213 dbSNP
rs1352670901 1215 dbSNP
rs1168522735 1224 dbSNP
rs557287047 1225 dbSNP
rs958558581 1232 dbSNP
rs1302237698 1243 dbSNP
rs989487585 1251 dbSNP
rs1327745140 1256 dbSNP
rs55777217 1258 dbSNP
rs1319533413 1260 dbSNP
rs1400681790 1269 dbSNP
rs913929800 1271 dbSNP
rs1175869457 1280 dbSNP
rs1397173356 1287 dbSNP
rs1285554702 1288 dbSNP
rs1394634690 1306 dbSNP
rs1189753425 1314 dbSNP
rs1358855976 1315 dbSNP
rs1431156491 1317 dbSNP
rs945381002 1320 dbSNP
rs1290372407 1323 dbSNP
rs1192597735 1326 dbSNP
rs1487892170 1328 dbSNP
rs1359639229 1338 dbSNP
rs1260950127 1339 dbSNP
rs189436139 1343 dbSNP
rs1304076521 1349 dbSNP
rs886047364 1350 dbSNP
rs911989234 1357 dbSNP
rs943189082 1358 dbSNP
rs1317095058 1360 dbSNP
rs1039308557 1361 dbSNP
rs1339019778 1362 dbSNP
rs1217518933 1369 dbSNP
rs920515576 1370 dbSNP
rs930596188 1374 dbSNP
rs1463826646 1378 dbSNP
rs772705971 1378 dbSNP
rs1174179558 1381 dbSNP
rs1047644275 1402 dbSNP
rs1420517918 1403 dbSNP
rs1167344372 1411 dbSNP
rs886047365 1427 dbSNP
rs1260925909 1433 dbSNP
rs1254240912 1434 dbSNP
rs1485865641 1447 dbSNP
rs1236725778 1454 dbSNP
rs1207796259 1459 dbSNP
rs1439146421 1466 dbSNP
rs779657789 1474 dbSNP
rs1217416531 1477 dbSNP
rs1040032982 1480 dbSNP
rs1295626195 1481 dbSNP
rs1234483313 1484 dbSNP
rs1379120060 1485 dbSNP
rs1301409171 1490 dbSNP
rs1444827704 1492 dbSNP
rs17335915 1498 dbSNP
rs993726577 1501 dbSNP
rs1401455120 1505 dbSNP
rs905632331 1509 dbSNP
rs1166973705 1510 dbSNP
rs1161576683 1511 dbSNP
rs1413011813 1518 dbSNP
rs1002360647 1523 dbSNP
rs1471042628 1524 dbSNP
rs747020756 1531 dbSNP
rs1197676803 1534 dbSNP
rs558159076 1543 dbSNP
rs1456045841 1544 dbSNP
rs1026918707 1546 dbSNP
rs1326486643 1549 dbSNP
rs1373147306 1551 dbSNP
rs887919482 1555 dbSNP
rs1006333593 1562 dbSNP
rs573249227 1563 dbSNP
rs1033751594 1564 dbSNP
rs1374575417 1566 dbSNP
rs1308780929 1576 dbSNP
rs10559113 1577 dbSNP
rs150276085 1577 dbSNP
rs779413084 1577 dbSNP
rs201111739 1579 dbSNP
rs200968467 1580 dbSNP
rs77901007 1581 dbSNP
rs1011535404 1593 dbSNP
rs1349165492 1593 dbSNP
rs1397003277 1593 dbSNP
rs1281788235 1596 dbSNP
rs540382426 1605 dbSNP
rs992125021 1611 dbSNP
rs1024933895 1614 dbSNP
rs1021213780 1616 dbSNP
rs1408490463 1616 dbSNP
rs1437383641 1620 dbSNP
rs1254505693 1621 dbSNP
rs1470190375 1631 dbSNP
rs192424201 1660 dbSNP
rs1487909148 1663 dbSNP
rs1264184950 1664 dbSNP
rs1218625492 1666 dbSNP
rs1317868139 1670 dbSNP
rs987450897 1672 dbSNP
rs1238461757 1673 dbSNP
rs1373400263 1681 dbSNP
rs1470558308 1687 dbSNP
rs977335316 1689 dbSNP
rs1410110474 1690 dbSNP
rs1472123143 1694 dbSNP
rs924508733 1706 dbSNP
rs1365655011 1710 dbSNP
rs1291681232 1711 dbSNP
rs144044369 1719 dbSNP
rs1361113341 1721 dbSNP
rs1157765507 1725 dbSNP
rs964800291 1729 dbSNP
rs989980265 1736 dbSNP
rs910336474 1741 dbSNP
rs943066184 1744 dbSNP
rs78310908 1751 dbSNP
rs1403474836 1754 dbSNP
rs562634722 1758 dbSNP
rs1264708485 1764 dbSNP
rs1187799763 1774 dbSNP
rs901487480 1785 dbSNP
rs929561084 1796 dbSNP
rs1263123193 1801 dbSNP
rs930503218 1813 dbSNP
rs1350589502 1822 dbSNP
rs1048079775 1824 dbSNP
rs371857311 1827 dbSNP
rs1048006178 1841 dbSNP
rs1232872551 1843 dbSNP
rs1310696433 1848 dbSNP
rs1297752637 1850 dbSNP
rs1382857715 1869 dbSNP
rs1277384260 1878 dbSNP
rs185614255 1880 dbSNP
rs907814216 1881 dbSNP
rs1397892484 1888 dbSNP
rs888012719 1890 dbSNP
rs1233558606 1892 dbSNP
rs1377091515 1893 dbSNP
rs1006387384 1898 dbSNP
rs568792060 1906 dbSNP
rs537424421 1907 dbSNP
rs372445350 1912 dbSNP
rs7919226 1913 dbSNP
rs1171836929 1914 dbSNP
rs1227042374 1915 dbSNP
rs1001728314 1921 dbSNP
rs190449684 1923 dbSNP
rs1438455087 1925 dbSNP
rs1192198313 1935 dbSNP
rs1206778281 1938 dbSNP
rs115697341 1939 dbSNP
rs549156432 1942 dbSNP
rs1200261669 1954 dbSNP
rs1482365669 1958 dbSNP
rs1253298157 1963 dbSNP
rs148180799 1975 dbSNP
rs1419669206 1980 dbSNP
rs1471726221 1981 dbSNP
rs1031627234 1984 dbSNP
rs1216760983 2000 dbSNP
rs1163006358 2001 dbSNP
rs879569249 2001 dbSNP
rs181511145 2002 dbSNP
rs66965505 2002 dbSNP
rs10634594 2003 dbSNP
rs11450437 2003 dbSNP
rs1308666370 2003 dbSNP
rs1328616907 2003 dbSNP
rs1375720408 2003 dbSNP
rs1396458303 2003 dbSNP
rs1447115812 2003 dbSNP
rs1420197985 2004 dbSNP
rs1462562498 2004 dbSNP
rs76449476 2005 dbSNP
rs1163245083 2014 dbSNP
rs1411121266 2020 dbSNP
rs1456691750 2020 dbSNP
rs927947932 2021 dbSNP
rs1369427102 2022 dbSNP
rs1414959339 2023 dbSNP
rs1314340334 2025 dbSNP
rs1342637102 2029 dbSNP
rs1243147338 2030 dbSNP
rs989990440 2033 dbSNP
rs1340623044 2034 dbSNP
rs1452327827 2037 dbSNP
rs1216849372 2040 dbSNP
rs1272490628 2041 dbSNP
rs1341547533 2042 dbSNP
rs567484240 2045 dbSNP
rs910347845 2046 dbSNP
rs1331225551 2050 dbSNP
rs6586043 2050 dbSNP
rs369249435 2051 dbSNP
rs1323437604 2052 dbSNP
rs1385552682 2055 dbSNP
rs563175721 2057 dbSNP
rs1018941070 2058 dbSNP
rs923003009 2064 dbSNP
rs1419488783 2069 dbSNP
rs368434240 2070 dbSNP
rs1047849737 2071 dbSNP
rs964745799 2072 dbSNP
rs975200060 2073 dbSNP
rs1166656556 2074 dbSNP
rs1449738088 2077 dbSNP
rs909504755 2078 dbSNP
rs1434873779 2079 dbSNP
rs1175117824 2095 dbSNP
rs942245385 2096 dbSNP
rs983330513 2098 dbSNP
rs1394624120 2099 dbSNP
rs907778335 2100 dbSNP
rs569375390 2102 dbSNP
rs1328641993 2103 dbSNP
rs539447638 2105 dbSNP
rs1437813352 2106 dbSNP
rs1296127825 2110 dbSNP
rs895288405 2111 dbSNP
rs558137162 2112 dbSNP
rs1014155721 2116 dbSNP
rs937030300 2117 dbSNP
rs1054584076 2120 dbSNP
rs1476468988 2126 dbSNP
rs892903992 2130 dbSNP
rs1257945687 2132 dbSNP
rs1046498523 2134 dbSNP
rs1343084861 2135 dbSNP
rs902591986 2136 dbSNP
rs999566706 2140 dbSNP
rs1032310209 2147 dbSNP
rs376319778 2148 dbSNP
rs946855923 2149 dbSNP
rs1186594322 2154 dbSNP
rs1011476373 2155 dbSNP
rs573161407 2158 dbSNP
rs540542427 2159 dbSNP
rs186104075 2163 dbSNP
rs111583855 2164 dbSNP
rs950515112 2165 dbSNP
rs113682796 2166 dbSNP
rs902770788 2167 dbSNP
rs908856507 2170 dbSNP
rs942299121 2171 dbSNP
rs1365153161 2173 dbSNP
rs1442322093 2176 dbSNP
rs1055330550 2178 dbSNP
rs916811929 2182 dbSNP
rs996212329 2186 dbSNP
rs1258098329 2188 dbSNP
rs1197486843 2192 dbSNP
rs372401897 2199 dbSNP
rs769634624 2199 dbSNP
rs188512985 2200 dbSNP
rs902604484 2209 dbSNP
rs952193816 2210 dbSNP
rs562430817 2211 dbSNP
rs1449222097 2212 dbSNP
rs1280427276 2223 dbSNP
rs1330938366 2225 dbSNP
rs1206646528 2228 dbSNP
rs1377950290 2230 dbSNP
rs369572637 2231 dbSNP
rs544629550 2232 dbSNP
rs1398024684 2233 dbSNP
rs1166905366 2237 dbSNP
rs893784053 2240 dbSNP
rs780423211 2243 dbSNP
rs981320376 2246 dbSNP
rs560197577 2249 dbSNP
rs112407896 2252 dbSNP
rs964984863 2255 dbSNP
rs1177460768 2256 dbSNP
rs997396328 2258 dbSNP
rs1432156683 2260 dbSNP
rs527547751 2261 dbSNP
rs1321673231 2262 dbSNP
rs1182062202 2268 dbSNP
rs950512715 2269 dbSNP
rs1242781385 2270 dbSNP
rs989855422 2271 dbSNP
rs760517515 2274 dbSNP
rs983131933 2276 dbSNP
rs1365232402 2281 dbSNP
rs1444642804 2282 dbSNP
rs1369886467 2289 dbSNP
rs1015952022 2296 dbSNP
rs763931295 2298 dbSNP
rs914299023 2299 dbSNP
rs1473758873 2310 dbSNP
rs1162365532 2315 dbSNP
rs990442600 2322 dbSNP
rs1388392788 2323 dbSNP
rs916864174 2327 dbSNP
rs1380513699 2338 dbSNP
rs1157725692 2341 dbSNP
rs1462372323 2343 dbSNP
rs200091989 2345 dbSNP
rs945856097 2345 dbSNP
rs149487427 2348 dbSNP
rs386746253 2348 dbSNP
rs1041451924 2351 dbSNP
rs200855194 2352 dbSNP
rs1488405423 2355 dbSNP
rs1388662761 2359 dbSNP
rs546921732 2360 dbSNP
rs944891273 2363 dbSNP
rs1488857001 2367 dbSNP
rs11202263 2371 dbSNP
rs1238302606 2375 dbSNP
rs1314195834 2376 dbSNP
rs900779429 2379 dbSNP
rs567593794 2380 dbSNP
rs935443430 2381 dbSNP
rs1226832691 2382 dbSNP
rs531389352 2388 dbSNP
rs1004929149 2391 dbSNP
rs374189282 2400 dbSNP
rs893878827 2411 dbSNP
rs181275256 2415 dbSNP
rs569208416 2418 dbSNP
rs1451109269 2419 dbSNP
rs1379015715 2427 dbSNP
rs761941621 2441 dbSNP
rs1176066752 2443 dbSNP
rs1246889558 2445 dbSNP
rs1432157965 2452 dbSNP
rs1039720953 2454 dbSNP
rs1487859950 2458 dbSNP
rs772082711 2462 dbSNP
rs1478337434 2470 dbSNP
rs773428085 2474 dbSNP
rs1262875337 2479 dbSNP
rs1030175001 2481 dbSNP
rs1484326377 2482 dbSNP
rs981290697 2493 dbSNP
rs1481840372 2494 dbSNP
rs1181028303 2495 dbSNP
rs1304953707 2496 dbSNP
rs1281266007 2508 dbSNP
rs886299192 2513 dbSNP
rs1341076597 2520 dbSNP
rs539933561 2525 dbSNP
rs551453662 2526 dbSNP
rs1403895635 2528 dbSNP
rs1016005831 2529 dbSNP
rs963089537 2530 dbSNP
rs895218058 2531 dbSNP
rs547841418 2532 dbSNP
rs1478407110 2533 dbSNP
rs1423558522 2535 dbSNP
rs1191401355 2537 dbSNP
rs566561818 2539 dbSNP
rs566551291 2541 dbSNP
rs533961811 2542 dbSNP
rs1482416644 2543 dbSNP
rs555627176 2546 dbSNP
rs185814232 2549 dbSNP
rs1318423165 2551 dbSNP
rs190971268 2552 dbSNP
rs1224947068 2557 dbSNP
rs935511038 2560 dbSNP
rs1342095938 2561 dbSNP
rs912332110 2571 dbSNP
rs944860291 2573 dbSNP
rs989646928 2574 dbSNP
rs1397611163 2575 dbSNP
rs930751182 2578 dbSNP
rs915364243 2579 dbSNP
rs1465694623 2590 dbSNP
rs556717604 2592 dbSNP
rs1039732320 2593 dbSNP
rs1228093185 2595 dbSNP
rs901137917 2599 dbSNP
rs932289172 2605 dbSNP
rs1276080293 2612 dbSNP
rs933991713 2614 dbSNP
rs1052137453 2617 dbSNP
rs1203995951 2619 dbSNP
rs372162535 2626 dbSNP
rs886354060 2627 dbSNP
rs1257861896 2628 dbSNP
rs1194047695 2634 dbSNP
rs887748937 2635 dbSNP
rs1483771162 2638 dbSNP
rs1265765575 2639 dbSNP
rs762916460 2645 dbSNP
rs1356741600 2653 dbSNP
rs1004705414 2662 dbSNP
rs577622666 2663 dbSNP
rs180923288 2669 dbSNP
rs1388980441 2670 dbSNP
rs560160900 2671 dbSNP
rs572047324 2672 dbSNP
rs757908186 2674 dbSNP
rs1003192830 2675 dbSNP
rs1427967814 2694 dbSNP
rs1362099365 2695 dbSNP
rs1002693911 2696 dbSNP
rs1031711345 2701 dbSNP
rs1267978754 2703 dbSNP
rs956936133 2705 dbSNP
rs1467800567 2712 dbSNP
rs1287693883 2715 dbSNP
rs1300814557 2716 dbSNP
rs989656971 2718 dbSNP
rs111972132 2719 dbSNP
rs552214194 2723 dbSNP
rs1277203948 2729 dbSNP
rs1011457785 2730 dbSNP
rs964144510 2731 dbSNP
rs975929027 2735 dbSNP
rs1452383123 2737 dbSNP
rs1299820687 2738 dbSNP
rs187271296 2739 dbSNP
rs1299227324 2746 dbSNP
rs1419278079 2748 dbSNP
rs934023082 2750 dbSNP
rs369179303 2751 dbSNP
rs191982847 2756 dbSNP
rs142846488 2757 dbSNP
rs200940920 2758 dbSNP
rs182749238 2760 dbSNP
rs940572055 2767 dbSNP
rs1313550627 2770 dbSNP
rs1479432388 2776 dbSNP
rs1217076766 2779 dbSNP
rs1264997136 2779 dbSNP
rs1445990093 2780 dbSNP
rs1037515879 2782 dbSNP
rs1201660884 2787 dbSNP
rs898975452 2788 dbSNP
rs551442384 2789 dbSNP
rs1012022008 2798 dbSNP
rs1222180780 2801 dbSNP
rs1045241282 2805 dbSNP
rs752584209 2805 dbSNP
rs1279175239 2810 dbSNP
rs1399787100 2813 dbSNP
rs1343653564 2821 dbSNP
rs76026587 2830 dbSNP
rs146102087 2835 dbSNP
rs549009731 2837 dbSNP
rs1447696028 2841 dbSNP
rs1425691495 2842 dbSNP
rs956947899 2851 dbSNP
rs1187957708 2859 dbSNP
rs1194105500 2863 dbSNP
rs569127952 2871 dbSNP
rs1239980747 2873 dbSNP
rs922086958 2876 dbSNP
rs1442671756 2878 dbSNP
rs1261917046 2884 dbSNP
rs567570870 2895 dbSNP
rs1435069472 2899 dbSNP
rs537709674 2900 dbSNP
rs187343991 2902 dbSNP
rs1022538877 2923 dbSNP
rs114717055 2930 dbSNP
rs778074106 2932 dbSNP
rs1286147427 2935 dbSNP
rs377753644 2936 dbSNP
rs940654632 2936 dbSNP
rs922710749 2941 dbSNP
rs571528957 2942 dbSNP
rs375416438 2943 dbSNP
rs374422069 2945 dbSNP
rs1369123416 2951 dbSNP
rs955449508 2952 dbSNP
rs1449172525 2953 dbSNP
rs907279253 2956 dbSNP
rs553888688 2959 dbSNP
rs190678224 2963 dbSNP
rs1417074814 2966 dbSNP
rs1164805758 2968 dbSNP
rs1472889949 2974 dbSNP
rs542598180 2975 dbSNP
rs567692869 2981 dbSNP
rs1458758869 2983 dbSNP
rs560877168 2986 dbSNP
rs1270452785 2989 dbSNP
rs1037610703 2990 dbSNP
rs1463894861 2992 dbSNP
rs1011842529 3009 dbSNP
rs1021522951 3010 dbSNP
rs1306302934 3014 dbSNP
rs967293780 3017 dbSNP
rs34973490 3019 dbSNP
rs1229251271 3021 dbSNP
rs1358986665 3022 dbSNP
rs1247294993 3028 dbSNP
rs1377794206 3033 dbSNP
rs576224449 3036 dbSNP
rs1297710388 3061 dbSNP
rs1479086804 3076 dbSNP
rs998467201 3078 dbSNP
rs543723818 3081 dbSNP
rs1352703491 3085 dbSNP
rs1325206036 3097 dbSNP
rs1424789656 3105 dbSNP
rs1472779030 3116 dbSNP
rs762622555 3117 dbSNP
rs1019275604 3121 dbSNP
rs757706841 3122 dbSNP
rs975158264 3142 dbSNP
rs1028505797 3144 dbSNP
rs1456590386 3147 dbSNP
rs947922014 3158 dbSNP
rs1044898960 3170 dbSNP
rs1324135536 3174 dbSNP
rs1176136387 3176 dbSNP
rs140013274 3181 dbSNP
rs939077535 3184 dbSNP
rs985387995 3185 dbSNP
rs909451691 3187 dbSNP
rs1292546409 3194 dbSNP
rs1052552344 3196 dbSNP
rs1373555567 3207 dbSNP
rs1289821232 3214 dbSNP
rs1242530509 3215 dbSNP
rs1354714013 3220 dbSNP
rs892110452 3231 dbSNP
rs73351802 3242 dbSNP
rs533656817 3245 dbSNP
rs1371088682 3247 dbSNP
rs1276606470 3258 dbSNP
rs1290532893 3259 dbSNP
rs1022591017 3260 dbSNP
rs1364780677 3262 dbSNP
rs1301101093 3264 dbSNP
rs1421091490 3265 dbSNP
rs1360770339 3269 dbSNP
rs1157723564 3279 dbSNP
rs1416847874 3280 dbSNP
rs779346779 3287 dbSNP
rs1291297624 3288 dbSNP
rs752841573 3294 dbSNP
rs1453381253 3304 dbSNP
rs1219262408 3314 dbSNP
rs1267149622 3314 dbSNP
rs1488702509 3326 dbSNP
rs1260431542 3330 dbSNP
rs1213717588 3331 dbSNP
rs547232797 3332 dbSNP
rs1219520522 3333 dbSNP
rs1280615439 3338 dbSNP
rs1224005779 3342 dbSNP
rs1344832329 3351 dbSNP
rs560213293 3362 dbSNP
rs1483478623 3365 dbSNP
rs527780951 3372 dbSNP
rs1435128985 3376 dbSNP
rs143613373 3392 dbSNP
rs12572023 3393 dbSNP
rs1163745208 3407 dbSNP
rs1176547717 3411 dbSNP
rs1469686237 3413 dbSNP
rs955661551 3417 dbSNP
rs182446860 3421 dbSNP
rs1415921199 3425 dbSNP
rs1196296669 3426 dbSNP
rs982858102 3434 dbSNP
rs1403562455 3437 dbSNP
rs1055859634 3444 dbSNP
rs1261270535 3445 dbSNP
rs894574479 3453 dbSNP
rs1015619328 3454 dbSNP
rs1256616852 3463 dbSNP
rs1203131480 3473 dbSNP
rs1163401907 3479 dbSNP
rs1322721488 3488 dbSNP
rs1370648729 3497 dbSNP
rs1411204193 3502 dbSNP
rs947225412 3513 dbSNP
rs1307895673 3516 dbSNP
rs1305869855 3522 dbSNP
rs962708064 3524 dbSNP
rs1409653201 3526 dbSNP
rs1285271069 3537 dbSNP
rs1336738696 3542 dbSNP
rs974043192 3556 dbSNP
rs1404522352 3563 dbSNP
rs1173515018 3576 dbSNP
rs1372829988 3580 dbSNP
rs1168809012 3590 dbSNP
rs903104196 3601 dbSNP
rs1243984420 3614 dbSNP
rs1183046162 3619 dbSNP
rs998692769 3623 dbSNP
rs1019500418 3626 dbSNP
rs900819842 3633 dbSNP
rs1289170075 3635 dbSNP
rs1224973212 3638 dbSNP
rs1323141482 3642 dbSNP
rs1315378815 3647 dbSNP
rs60431487 3662 dbSNP
rs920547328 3668 dbSNP
rs1342973941 3676 dbSNP
rs1244572877 3707 dbSNP
rs1379992831 3719 dbSNP
rs1332832036 3720 dbSNP
rs1392434490 3721 dbSNP
rs947963981 3723 dbSNP
rs981017993 3724 dbSNP
rs1459818454 3731 dbSNP
rs1386068078 3732 dbSNP
rs1163218591 3733 dbSNP
rs1443040316 3740 dbSNP
rs996937025 3749 dbSNP
rs11202264 3752 dbSNP
rs1438256826 3760 dbSNP
rs1249809877 3767 dbSNP
rs939113318 3769 dbSNP
rs772085430 3795 dbSNP
rs1292013634 3799 dbSNP
rs61209939 3801 dbSNP
rs1356858134 3804 dbSNP
rs1235402703 3811 dbSNP
rs946407090 3813 dbSNP
rs1310744963 3816 dbSNP
rs1239008537 3825 dbSNP
rs984970116 3826 dbSNP
rs188106948 3833 dbSNP
rs1388853990 3837 dbSNP
rs900092920 3840 dbSNP
rs1390248748 3842 dbSNP
rs1422912151 3846 dbSNP
rs962212888 3856 dbSNP
rs997080319 3859 dbSNP
rs1030262783 3864 dbSNP
rs867630725 3867 dbSNP
rs891318158 3884 dbSNP
rs1469744730 3886 dbSNP
rs553815321 3887 dbSNP
rs1179626412 3888 dbSNP
rs1481395743 3903 dbSNP
rs928890025 3910 dbSNP
rs938677062 3910 dbSNP
rs1489683218 3916 dbSNP
rs1322484166 3918 dbSNP
rs2291646 3921 dbSNP
rs1349378445 3941 dbSNP
rs1414715081 3945 dbSNP
rs780777957 3950 dbSNP
rs1342653467 3953 dbSNP
rs1346710801 3959 dbSNP
rs1446383260 3961 dbSNP
rs947495346 3963 dbSNP
rs192576603 3964 dbSNP
rs902993064 3977 dbSNP
rs1382832519 3978 dbSNP
rs1470884170 3978 dbSNP
rs577395608 3978 dbSNP
rs184435006 3981 dbSNP
rs934510514 3988 dbSNP
rs1479369279 3996 dbSNP
rs1230750489 4007 dbSNP
rs1193398758 4017 dbSNP
rs1272609874 4041 dbSNP
rs554579320 4046 dbSNP
rs1446085292 4051 dbSNP
rs1258985935 4052 dbSNP
rs1022886044 4075 dbSNP
rs7180 4081 dbSNP
rs1280389688 4084 dbSNP
rs1222044331 4089 dbSNP
rs901111543 4101 dbSNP
rs1209320669 4105 dbSNP
rs1271173012 4107 dbSNP
rs543087953 4108 dbSNP
rs927849458 4116 dbSNP
rs1005675331 4126 dbSNP
rs1406719871 4127 dbSNP
rs1175662278 4140 dbSNP
rs939236085 4145 dbSNP
rs145345450 4161 dbSNP
rs1389038362 4165 dbSNP
rs987972000 4170 dbSNP
rs1168293063 4175 dbSNP
rs913658839 4177 dbSNP
rs368257404 4187 dbSNP
rs946416941 4189 dbSNP
rs1474837970 4196 dbSNP
rs1371050085 4199 dbSNP
rs1043426479 4210 dbSNP
rs1015363993 4214 dbSNP
rs920916349 4215 dbSNP
rs1243038720 4220 dbSNP
rs993689164 4233 dbSNP
rs932290673 4237 dbSNP
rs1214357418 4238 dbSNP
rs577114056 4240 dbSNP
rs1413182751 4248 dbSNP
rs188868145 4251 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' -----------acuuGAACCCa 3'
1 - 11
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' -caggagaaucacuuGAACCCa 3'
1 - 21
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000372037.3 | 3UTR | ACUUGAACCCAGGAGGCGGAGGUUGCAGUGAGCUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE15076 Monocyte-derived dendritic cells -0.94 8.2e-5 -0.517 7.7e-2 9 Click to see details
GSE21032 Prostate cancer -0.364 3.6e-4 -0.330 1.2e-3 83 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.419 1.9e-2 0.549 2.2e-3 25 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.401 4.0e-2 0.602 2.5e-3 20 Click to see details
GSE19350 CNS germ cell tumors 0.324 1.5e-1 0.166 3.0e-1 12 Click to see details
GSE42095 Differentiated embryonic stem cells 0.222 1.5e-1 0.020 4.6e-1 23 Click to see details
GSE28260 Renal cortex and medulla 0.288 1.7e-1 0.418 7.8e-2 13 Click to see details
GSE28544 Breast cancer -0.166 2.2e-1 -0.072 3.7e-1 24 Click to see details
GSE19783 ER+ ER+ breast cancer 0.114 3.2e-1 0.072 3.8e-1 20 Click to see details
GSE32688 Pancreatic cancer -0.07 3.5e-1 -0.049 3.9e-1 32 Click to see details
GSE19536 Breast cancer 0.033 3.7e-1 0.007 4.7e-1 100 Click to see details
GSE19783 ER- ER- breast cancer 0.027 4.1e-1 -0.006 4.8e-1 79 Click to see details
GSE26953 Aortic valvular endothelial cells 0.041 4.2e-1 0.037 4.3e-1 24 Click to see details
GSE21687 Ependynoma primary tumors 0.02 4.4e-1 0.050 3.5e-1 64 Click to see details
GSE38226 Liver fibrosis 0.034 4.4e-1 0.109 3.2e-1 21 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.019 4.6e-1 0.041 4.2e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.455 0 -0.424 0 40 Click to see details
ESCA -0.693 0.01 -0.636 0.02 11 Click to see details
CESC -0.945 0.11 -1.000 0.5 3 Click to see details
UCEC 0.291 0.11 0.305 0.1 19 Click to see details
STAD -0.228 0.12 -0.273 0.08 28 Click to see details
CHOL 0.448 0.13 0.595 0.06 8 Click to see details
LUAD 0.365 0.17 -0.217 0.29 9 Click to see details
THCA 0.123 0.18 0.223 0.04 59 Click to see details
KICH 0.175 0.23 -0.020 0.47 20 Click to see details
BLCA -0.193 0.24 -0.162 0.27 16 Click to see details
PRAD 0.105 0.33 0.012 0.48 19 Click to see details
KIRC -0.048 0.36 -0.035 0.39 62 Click to see details
LUSC 0.055 0.37 0.052 0.38 38 Click to see details
LIHC -0.045 0.39 -0.146 0.19 38 Click to see details
PCPG 0.291 0.41 0.500 0.33 3 Click to see details
KIRP 0.04 0.41 0.019 0.46 32 Click to see details
PAAD -0.128 0.44 0.200 0.4 4 Click to see details
COAD -0.064 0.44 -0.095 0.41 8 Click to see details
BRCA -0.017 0.44 -0.030 0.4 78 Click to see details
BRCA -0.017 0.44 -0.030 0.4 78 Click to see details
BRCA -0.017 0.44 -0.030 0.4 78 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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