pre-miRNA Information
pre-miRNA hsa-mir-497   
Genomic Coordinates chr17: 7017911 - 7018022
Synonyms MIRN497, hsa-mir-497, MIR497
Description Homo sapiens miR-497 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-497-3p
Sequence 64| CAAACCACACUGUGGUGUUAGA |85
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 17 - 7017957 29233923 MiREDiBase
A-to-I 4 17 - 7017956 29233923 MiREDiBase
A-to-I 20 17 - 7017940 24964909, 25521855, 27229138, 29165639, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1413601274 5 dbSNP
rs1028648384 6 dbSNP
rs1479092960 9 dbSNP
rs1261056598 10 dbSNP
rs997278260 11 dbSNP
rs1324708562 13 dbSNP
rs755634302 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ARL4C   
Synonyms ARL7, LAK
Description ADP ribosylation factor like GTPase 4C
Transcript NM_005737   
Expression
Putative miRNA Targets on ARL4C
3'UTR of ARL4C
(miRNA target sites are highlighted)
>ARL4C|NM_005737|3'UTR
   1 TGCGCCCGGAGCGACCGGGGAGCGAGCGAGTGCGTCAAGAAAGAATGAATGGATGGATGGATGGTTGGATGGATGGATGG
  81 ATGGATGAGCGAGAACCCGCGCCCGCGAACAAAGAGCGAACCAAAGCGATGCTTCGAATTTTTAAAACGGAATCTCTGCA
 161 CCCAAATGCAGGACTGGTGACTTAAGGAGCTGCGAAGTCTGATTTACCGGCCTACTCTCGACCTGCCCCCCACCCCCAGC
 241 TCAGGGGACCTTTTGTCTGAACGCCAGAGCTACTGACCAGGTCGGGGGGCCGCGGTGGGGAGTGGAAGAGCCGGTCCTGC
 321 TGTCCGCCCTCCCAGCCCCAGGTGGAAGGCTCAGTTGTCGGAAAGACAAAAGCGATTTCTTCCCACTCCTGCAGGGCCAG
 401 AAGTTCAGGCTGCCCCGCCTCCACTGGGGGATCGCACCTGTGAATTACCTGAGGTATGCATTTCCCAGAACCGTGGGCGT
 481 ACCCACCTTGGGGGGCATGTTGGTTCTGGGGGGACCACCTCTCCTTGCATTCAGGGGCTGTGAAGCTGAGTAATTTTCGG
 561 TCACAGGGCAGGCCCCTGTTGAAATTTCATTTGTCCTGCTCTGGGCCCAAAGGTGGTGGTGGTTTGGGTCATCAGAGGAC
 641 TGCCTGGGACGGTTCAGCGGGCACGGAGCGCTGTGCTGGCCTGGCTGGGGATGGCCGCGGAGGTGCCCTTTTCCTGGTGC
 721 TTTGTGGTGGCTGCAGAAGACCAGTTTTGTTGAGAACTGCTTTTCAGCCTGGAATCAGACATCTTCCAGATGGTTTGGAC
 801 CCTGTCCATGTGTAGGTCATTATCACACAAAGAGACCAATAAAAATAAAAAAAATAAAAAAAAAAAAAGACGAACTATTG
 881 GAGGTGGTGGCCAATGATGCATTTACTGTTTGCAGGATAGTTAAAGGTGTTTAAAGGGTAAGGCTTTTGGTGTAAATGCT
 961 GGATGGGGTGTGTGTGTGTGTGGATATAGGGACCTCCCTCTGTACTGTGTACTGTGTAATCGGCATTAATACCTAGACTC
1041 ATATGTATGGAATTTTAAATTCTCTTAGCCTACTGATTGGTTTGGATGAGCACACCAGCTGCAGGTGTGTGCTGAATTGC
1121 AAGATGGTATTTTTTTTTTTAACCAAGGGATGTCTCTTGTAATACTAACCGCGTGATAATGGGTTTTCAGACATGATGAA
1201 AAAAAAAAACTTTTACAAATGAATACTTACCTTAGAAATATTCACCTTAGGAAAAAAGACTTTGCTCTGCCCTTTTATAT
1281 TCCTTTATGCTGCAAGTGGTGACATGTTCAGATTTCTAATTTGGTTCATTGTGGCCTATCTGGTTTAAGTCTTTCATTAA
1361 AAATGTCTCGTTAGAGTATTTGATGTCATGCACCAAAAAAATAAAACCCCACCTTGTTGCAAAAGCTGACCTCGTTGCAT
1441 GGAATTAAAAGAGAAGGAAAAACACAAGGATGAAGTCTTTCCGAATTCATTCTTGTGGGAACTGGCCTTCGGAGCCAGCC
1521 AGCACTTTGGGCAAATGCAAACAACAATGAGTGCTTGAGATAAAAGAAAGTGTGACGTCATGGTCACTGGTACTCAGGCA
1601 CTTCACAGTTTACTTGAAAGAGGCTTTGGAAAATAGATAAAGTGAAAGAAGAATAAATACATATTTTTAATAATGTAATT
1681 TTAAAAATCCTTTATAATCAGGACTGAGTCTTGGTTTGCAGAAGCTGTCACTTACCCTGAAACACAGTATCAAAAGGGAA
1761 ACTTAAAACATACTGTTTGATTTTTTTATTTCCTCTTACAATCCATGTTTTCAGGTAGAATTATGACTTTCCCCCCATTG
1841 TTACACATTTCTTTACAAAGGAGGCCTGTAGAAATTGGACACGATCATGCTTGAGCATGTGAGTTAGTCAAATTATGAGT
1921 CCCTGCCTATTGTCCATTACACACCGAATGTTAATTTAAGAACCAGAGGCAGAAGTTCTGGCTTCCTGCTTGAAACCCAA
2001 TTCTTATATGAAATTTTTTAAAAGCAGAAACCTAGCAGCCCATCTGCTTTTTCTCTTTTGTCGGTGTATTTGGTACCCCT
2081 CCAATGCTGGTCTTTTTGTAGAAACTCAGTAGAGAAAGTCTAGCTAAGCAGTGTTGAAAAGCCTGCAAGATTTCAGTTTA
2161 CATATCGACAGCATATCCACTGATTTCTAAATGGGCTGGTCCCATCATCTGAAGATTCTGTATAGAATTATTAAAAAAAA
2241 AATCCATCTTTCTTTATTTTCTTCACATGCGACAATTTCTTAAGCACTTTGACATTTTGGTAGTTCCACACTATTGAGAG
2321 AATAATATATTTATTTTGTGACATTGCAGATGCCAAATACTGTAACCTTCTCATGATAACAATACTTAGGTTCAAGATCA
2401 CTGTTCAAACCCTGTCATGCTTTAAAACTGATGCGAGATGATTTTGTTTTTTGCATAATCAATACTTAAGGGTGCAATCA
2481 ACTGTTAGTAATTGTGCAGTAAAGTAAAGCCCTGTGGTGTATCAACTACTAGTTAAGAGTCTCAGTTGATTTCTGTAATG
2561 TTTGACCTAATAATAGCCCGTTTCGTCTCTGACCCAACAGAGGAAGCACAGATCAAATCACCTTGGAGTGGTCACCAGGG
2641 GGACAGGGAGCCCCCCACCAATGTATCAATGGGTGATTTATGATGCCTTCTGCCCTTTGGCGAGTGAATGGGTTTCCCAT
2721 AGGGGAAGTTGGCCTCCCTCCGTGAGCTTTGGAAATGTTTTCTAATAGACACAGGGAGGCCAGTTCTGTTTCAGAGCAAT
2801 TATCTTCCCAAATTCTCTGTTCTGGTGTTGGAACTGTGTGCCCTGGTTTCTGTTTTCCTTTCTACTGCTGTAATTCTCTG
2881 TCTCATCATCCTTCTCTTTTGTTTCCATAGCCTTTTATAATGCATATATGATGCTGTGAACAGAAATAAATTATTTATAC
2961 AATCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agAUUGUGGU----GUCA-CACCAAAc 5'
            |::  |||    ::|| ||||||| 
Target 5' tcTGGGCCCAAAGGTGGTGGTGGTTTg 3'
600 - 626 146.00 -17.00
2
miRNA  3' agAUUGUGGUGUCACACCAAAc 5'
            ||:| |:|| |  |||||| 
Target 5' ctTAGC-CTACTGATTGGTTTg 3'
1064 - 1084 131.00 -14.90
3
miRNA  3' agAUU-GUGGUG--UCA-CACCAAAc 5'
            ||| ||  ||  |||  |||||| 
Target 5' taTAATCAGGACTGAGTCTTGGTTTg 3'
1693 - 1718 126.00 -12.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
709370 4 ClinVar
COSN31610761 12 COSMIC
COSN20074268 27 COSMIC
COSN30130146 34 COSMIC
COSN506992 46 COSMIC
COSN30147070 47 COSMIC
COSN26966786 52 COSMIC
COSN30108154 61 COSMIC
COSN30108147 65 COSMIC
COSN30515016 96 COSMIC
COSN13980115 107 COSMIC
COSN30501122 108 COSMIC
COSN30120381 118 COSMIC
COSN30157401 118 COSMIC
COSN26634640 136 COSMIC
COSN26966788 136 COSMIC
COSN30536172 150 COSMIC
COSN30500553 154 COSMIC
COSM8149806 162 COSMIC
COSM6604821 194 COSMIC
COSN506993 209 COSMIC
COSN30157039 218 COSMIC
COSN18726070 226 COSMIC
COSN28201818 228 COSMIC
COSN31567357 234 COSMIC
COSN30471485 237 COSMIC
COSN30464649 244 COSMIC
COSN30674636 278 COSMIC
COSN13980107 293 COSMIC
COSN26553045 350 COSMIC
COSN28851077 396 COSMIC
COSN16392305 654 COSMIC
COSN28632689 665 COSMIC
COSN27989330 783 COSMIC
COSN31531701 857 COSMIC
COSN31607957 963 COSMIC
COSN29777510 968 COSMIC
COSN20097985 1001 COSMIC
COSN31516140 1127 COSMIC
COSN27217074 1130 COSMIC
COSN31516698 1154 COSMIC
COSN27524800 1198 COSMIC
COSN19225043 1338 COSMIC
COSN27248678 1369 COSMIC
COSN31528923 1477 COSMIC
COSN31487769 1549 COSMIC
COSN26643928 1604 COSMIC
COSN31530529 1640 COSMIC
COSN20097982 1873 COSMIC
COSN20097979 1874 COSMIC
COSN20090753 2039 COSMIC
COSN31608556 2053 COSMIC
COSN31579710 2079 COSMIC
COSN31537697 2177 COSMIC
COSN31550451 2232 COSMIC
COSN21541935 2250 COSMIC
COSN28778919 2373 COSMIC
COSN31532641 2447 COSMIC
COSN31559536 2780 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1229348597 2 dbSNP
rs116822290 4 dbSNP
rs3817134 7 dbSNP
rs3817133 9 dbSNP
rs3817132 10 dbSNP
rs3817131 12 dbSNP
rs3817130 13 dbSNP
rs771246697 14 dbSNP
rs925781321 16 dbSNP
rs3817129 17 dbSNP
rs3817128 18 dbSNP
rs3817127 19 dbSNP
rs1186126558 21 dbSNP
rs778589064 22 dbSNP
rs374022338 23 dbSNP
rs539198981 24 dbSNP
rs753458755 25 dbSNP
rs779420707 26 dbSNP
rs1426557868 27 dbSNP
rs1366132084 32 dbSNP
rs1162917576 34 dbSNP
rs756078288 38 dbSNP
rs1201317947 43 dbSNP
rs1473178757 45 dbSNP
rs1046462921 46 dbSNP
rs367768116 46 dbSNP
rs774824545 50 dbSNP
rs553714125 55 dbSNP
rs746079849 63 dbSNP
rs1398941724 65 dbSNP
rs949105807 65 dbSNP
rs1160213887 68 dbSNP
rs1316574871 69 dbSNP
rs1278073467 77 dbSNP
rs913808384 77 dbSNP
rs943260132 77 dbSNP
rs910227607 80 dbSNP
rs1278509311 81 dbSNP
rs1432154718 81 dbSNP
rs1371792332 85 dbSNP
rs1208938625 88 dbSNP
rs1243008427 88 dbSNP
rs987125872 88 dbSNP
rs1282754263 98 dbSNP
rs1443007638 101 dbSNP
rs954511357 104 dbSNP
rs1468508213 105 dbSNP
rs988052602 116 dbSNP
rs971802107 117 dbSNP
rs1395658127 119 dbSNP
rs771215050 123 dbSNP
rs1259181607 125 dbSNP
rs957863789 128 dbSNP
rs533975975 136 dbSNP
rs925080704 139 dbSNP
rs757163818 154 dbSNP
rs1222482843 159 dbSNP
rs751366933 160 dbSNP
rs764476998 165 dbSNP
rs568307452 169 dbSNP
rs763073076 172 dbSNP
rs1326081267 174 dbSNP
rs1293632115 176 dbSNP
rs1406982310 177 dbSNP
rs775653891 181 dbSNP
rs1302595065 184 dbSNP
rs554443460 189 dbSNP
rs1398482309 191 dbSNP
rs1232558231 200 dbSNP
rs1023626495 208 dbSNP
rs1461235697 209 dbSNP
rs953559978 210 dbSNP
rs765164742 211 dbSNP
rs760122554 214 dbSNP
rs1195487319 216 dbSNP
rs537703966 218 dbSNP
rs771408153 219 dbSNP
rs747417623 222 dbSNP
rs369942755 225 dbSNP
rs768417626 226 dbSNP
rs567177890 227 dbSNP
rs745346264 231 dbSNP
rs1256556182 232 dbSNP
rs1225627245 233 dbSNP
rs757255435 234 dbSNP
rs1015180449 239 dbSNP
rs751456952 240 dbSNP
rs749420932 241 dbSNP
rs763739020 245 dbSNP
rs1329389226 246 dbSNP
rs888036776 247 dbSNP
rs998861580 250 dbSNP
rs758651582 252 dbSNP
rs148591697 254 dbSNP
rs1268654166 258 dbSNP
rs1042871250 260 dbSNP
rs1219326451 263 dbSNP
rs1272691691 265 dbSNP
rs1243431257 285 dbSNP
rs533292293 287 dbSNP
rs1208027160 290 dbSNP
rs910497673 290 dbSNP
rs1191951315 291 dbSNP
rs1052095807 295 dbSNP
rs1478636792 299 dbSNP
rs933038914 304 dbSNP
rs570907635 312 dbSNP
rs918915911 313 dbSNP
rs1391841432 316 dbSNP
rs904923846 319 dbSNP
rs1046176852 320 dbSNP
rs115472090 325 dbSNP
rs746594480 326 dbSNP
rs1052055942 327 dbSNP
rs1245391691 332 dbSNP
rs1383646118 337 dbSNP
rs970613930 338 dbSNP
rs1023257035 349 dbSNP
rs1356701416 360 dbSNP
rs538366947 360 dbSNP
rs527883248 361 dbSNP
rs925217454 364 dbSNP
rs778078508 368 dbSNP
rs960038812 370 dbSNP
rs1256137648 373 dbSNP
rs1421559379 377 dbSNP
rs986346251 379 dbSNP
rs1369547918 382 dbSNP
rs1453753972 384 dbSNP
rs931861860 385 dbSNP
rs998913807 394 dbSNP
rs1420492885 397 dbSNP
rs923341519 409 dbSNP
rs904587256 412 dbSNP
rs375111593 416 dbSNP
rs1397862149 417 dbSNP
rs1385351041 423 dbSNP
rs1184980576 425 dbSNP
rs1340977073 428 dbSNP
rs562095699 433 dbSNP
rs1437454146 434 dbSNP
rs542549953 435 dbSNP
rs1355616139 437 dbSNP
rs370475711 446 dbSNP
rs1216813383 450 dbSNP
rs1232654364 460 dbSNP
rs1279170946 472 dbSNP
rs532011016 475 dbSNP
rs758934707 480 dbSNP
rs1014899274 482 dbSNP
rs1007414984 486 dbSNP
rs888942471 491 dbSNP
rs1440032044 495 dbSNP
rs1382500455 496 dbSNP
rs768902565 497 dbSNP
rs933187199 498 dbSNP
rs897515767 506 dbSNP
rs562490035 507 dbSNP
rs1303476760 508 dbSNP
rs1395902356 509 dbSNP
rs1390700685 510 dbSNP
rs1222438566 512 dbSNP
rs1378752831 526 dbSNP
rs1360166920 527 dbSNP
rs1317265942 528 dbSNP
rs1240600459 530 dbSNP
rs952249872 532 dbSNP
rs1235016369 558 dbSNP
rs941665903 560 dbSNP
rs1480036216 561 dbSNP
rs1197234124 568 dbSNP
rs1372957876 574 dbSNP
rs1034630089 589 dbSNP
rs775150320 593 dbSNP
rs1442717235 596 dbSNP
rs553653917 605 dbSNP
rs1193385596 607 dbSNP
rs980928033 608 dbSNP
rs1356086694 621 dbSNP
rs1002097888 638 dbSNP
rs1177083975 639 dbSNP
rs1423937116 641 dbSNP
rs1365598107 642 dbSNP
rs1464138392 645 dbSNP
rs916031017 650 dbSNP
rs1402358457 657 dbSNP
rs1165000346 658 dbSNP
rs1417482264 659 dbSNP
rs1406848502 661 dbSNP
rs8245 665 dbSNP
rs1025142655 668 dbSNP
rs1013297547 678 dbSNP
rs1220543806 682 dbSNP
rs746215996 691 dbSNP
rs1199251564 695 dbSNP
rs1216248063 697 dbSNP
rs1031645596 698 dbSNP
rs1319184203 699 dbSNP
rs1213664478 700 dbSNP
rs1245296776 701 dbSNP
rs778291495 702 dbSNP
rs1191923481 707 dbSNP
rs1261291745 712 dbSNP
rs1294035404 720 dbSNP
rs372458777 724 dbSNP
rs1172885917 729 dbSNP
rs1316532669 742 dbSNP
rs1424478504 769 dbSNP
rs754584531 780 dbSNP
rs113530329 784 dbSNP
rs1063921 786 dbSNP
rs766107003 788 dbSNP
rs931803534 802 dbSNP
rs1375171976 805 dbSNP
rs923087759 819 dbSNP
rs1281157645 823 dbSNP
rs1404249122 824 dbSNP
rs1346151289 826 dbSNP
rs1304401735 828 dbSNP
rs1293961240 832 dbSNP
rs1428105033 832 dbSNP
rs1008046562 834 dbSNP
rs1344120023 836 dbSNP
rs1159288955 837 dbSNP
rs1402095903 840 dbSNP
rs1423483134 846 dbSNP
rs1176242287 847 dbSNP
rs1288357455 847 dbSNP
rs1481031851 851 dbSNP
rs201711991 854 dbSNP
rs1260559925 855 dbSNP
rs370570571 855 dbSNP
rs6716068 855 dbSNP
rs878884448 855 dbSNP
rs1474926923 856 dbSNP
rs6719230 856 dbSNP
rs1407067496 857 dbSNP
rs1411524982 857 dbSNP
rs879558152 857 dbSNP
rs907976258 857 dbSNP
rs540104943 858 dbSNP
rs952055839 859 dbSNP
rs1299670079 860 dbSNP
rs1030557448 861 dbSNP
rs1035008722 862 dbSNP
rs113211016 863 dbSNP
rs1427603354 864 dbSNP
rs11476419 869 dbSNP
rs1208092624 869 dbSNP
rs1308942249 869 dbSNP
rs1351994904 869 dbSNP
rs796178613 869 dbSNP
rs796302283 869 dbSNP
rs1020247101 885 dbSNP
rs1036263863 904 dbSNP
rs1473718337 908 dbSNP
rs1182408461 915 dbSNP
rs1379394023 920 dbSNP
rs972060083 924 dbSNP
rs1261023318 935 dbSNP
rs1437599127 940 dbSNP
rs757575466 943 dbSNP
rs1360755398 945 dbSNP
rs1024445243 949 dbSNP
rs574581797 969 dbSNP
rs892193249 970 dbSNP
rs1044828908 974 dbSNP
rs1380460000 975 dbSNP
rs1030733377 983 dbSNP
rs373685094 983 dbSNP
rs376722809 983 dbSNP
rs947756107 983 dbSNP
rs1360590765 986 dbSNP
rs1288999295 988 dbSNP
rs1432450649 989 dbSNP
rs916099432 990 dbSNP
rs992928064 999 dbSNP
rs1443098585 1000 dbSNP
rs75576529 1007 dbSNP
rs201038540 1012 dbSNP
rs11277725 1019 dbSNP
rs59835938 1019 dbSNP
rs1470478678 1021 dbSNP
rs1000477576 1022 dbSNP
rs903556283 1023 dbSNP
rs1170475166 1032 dbSNP
rs1426584543 1033 dbSNP
rs938838012 1041 dbSNP
rs554306579 1055 dbSNP
rs1398725219 1060 dbSNP
rs1449716470 1062 dbSNP
rs183164002 1064 dbSNP
rs1420299885 1066 dbSNP
rs996071779 1070 dbSNP
rs1188431127 1071 dbSNP
rs1482383130 1072 dbSNP
rs1346061781 1074 dbSNP
rs190842304 1075 dbSNP
rs556172694 1079 dbSNP
rs1256290296 1084 dbSNP
rs1315950808 1095 dbSNP
rs1200484121 1096 dbSNP
rs1040183916 1103 dbSNP
rs144654048 1105 dbSNP
rs184920474 1127 dbSNP
rs907945665 1132 dbSNP
rs1478186705 1140 dbSNP
rs1169319054 1141 dbSNP
rs568050349 1141 dbSNP
rs1264781559 1159 dbSNP
rs1172041736 1163 dbSNP
rs1225131239 1164 dbSNP
rs547872254 1170 dbSNP
rs1247664679 1171 dbSNP
rs986252185 1172 dbSNP
rs1295638256 1183 dbSNP
rs10172244 1190 dbSNP
rs1215864918 1192 dbSNP
rs1379968678 1194 dbSNP
rs1313868059 1195 dbSNP
rs1452924645 1197 dbSNP
rs1408685161 1198 dbSNP
rs1342473025 1199 dbSNP
rs758159538 1199 dbSNP
rs1049210819 1203 dbSNP
rs1220322243 1208 dbSNP
rs1355643198 1210 dbSNP
rs953561381 1210 dbSNP
rs533997426 1215 dbSNP
rs1291826035 1222 dbSNP
rs1461916236 1229 dbSNP
rs750278685 1234 dbSNP
rs927277470 1253 dbSNP
rs1490403303 1258 dbSNP
rs1030405463 1259 dbSNP
rs980518914 1263 dbSNP
rs1355672338 1264 dbSNP
rs1478524944 1264 dbSNP
rs1194944477 1270 dbSNP
rs1172599050 1279 dbSNP
rs1368386723 1292 dbSNP
rs1472123484 1303 dbSNP
rs767376310 1324 dbSNP
rs1384722600 1328 dbSNP
rs917509902 1343 dbSNP
rs1419271987 1360 dbSNP
rs1296594788 1364 dbSNP
rs988921703 1365 dbSNP
rs1014884631 1369 dbSNP
rs761851042 1370 dbSNP
rs956238355 1382 dbSNP
rs887454614 1386 dbSNP
rs1045101916 1387 dbSNP
rs1012010988 1389 dbSNP
rs1030703808 1392 dbSNP
rs896252475 1396 dbSNP
rs1489100054 1400 dbSNP
rs1205181272 1402 dbSNP
rs1000529579 1407 dbSNP
rs1056122052 1411 dbSNP
rs568687041 1412 dbSNP
rs1190246642 1433 dbSNP
rs548773874 1434 dbSNP
rs532073858 1437 dbSNP
rs117371685 1439 dbSNP
rs996262079 1447 dbSNP
rs1420598992 1451 dbSNP
rs1251767781 1455 dbSNP
rs1206574708 1462 dbSNP
rs1302308753 1467 dbSNP
rs1356557960 1470 dbSNP
rs1290417553 1475 dbSNP
rs1336108031 1476 dbSNP
rs1239154489 1477 dbSNP
rs1306870431 1481 dbSNP
rs552244451 1482 dbSNP
rs924773240 1483 dbSNP
rs901739718 1485 dbSNP
rs532134198 1494 dbSNP
rs1481995281 1495 dbSNP
rs763931536 1499 dbSNP
rs1244284881 1504 dbSNP
rs759716698 1510 dbSNP
rs776548949 1511 dbSNP
rs886313678 1516 dbSNP
rs1240460238 1517 dbSNP
rs1374540060 1524 dbSNP
rs1300378927 1535 dbSNP
rs1175655993 1537 dbSNP
rs1467652882 1549 dbSNP
rs986568516 1549 dbSNP
rs1177326500 1551 dbSNP
rs1406703067 1551 dbSNP
rs1446001321 1553 dbSNP
rs953388111 1554 dbSNP
rs1365019985 1566 dbSNP
rs1378864847 1570 dbSNP
rs1164364738 1574 dbSNP
rs559850530 1576 dbSNP
rs747191135 1577 dbSNP
rs116067644 1578 dbSNP
rs149353063 1584 dbSNP
rs1263279005 1590 dbSNP
rs1418246372 1595 dbSNP
rs950119660 1603 dbSNP
rs1197338937 1610 dbSNP
rs772356720 1622 dbSNP
rs989060511 1623 dbSNP
rs1190763214 1624 dbSNP
rs1265530288 1625 dbSNP
rs748459002 1634 dbSNP
rs114329649 1636 dbSNP
rs1200193681 1639 dbSNP
rs1423046374 1640 dbSNP
rs543985176 1651 dbSNP
rs1464990279 1660 dbSNP
rs1168458980 1663 dbSNP
rs1355990759 1667 dbSNP
rs575190689 1681 dbSNP
rs926087251 1682 dbSNP
rs1292782366 1686 dbSNP
rs1365029495 1688 dbSNP
rs1388196858 1691 dbSNP
rs1283327628 1699 dbSNP
rs952026848 1700 dbSNP
rs1290392901 1701 dbSNP
rs1339305940 1707 dbSNP
rs1222639172 1709 dbSNP
rs1023538659 1710 dbSNP
rs1221279718 1711 dbSNP
rs558425231 1719 dbSNP
rs1223527326 1727 dbSNP
rs1258535111 1745 dbSNP
rs770677454 1749 dbSNP
rs878957742 1755 dbSNP
rs1196017605 1762 dbSNP
rs116525028 1764 dbSNP
rs1034426075 1768 dbSNP
rs1163774432 1770 dbSNP
rs995842365 1785 dbSNP
rs966134932 1787 dbSNP
rs1283557760 1788 dbSNP
rs755420502 1801 dbSNP
rs1303396928 1803 dbSNP
rs1403630645 1815 dbSNP
rs1359276057 1825 dbSNP
rs1018871767 1826 dbSNP
rs1004765348 1837 dbSNP
rs879231096 1837 dbSNP
rs1363245247 1841 dbSNP
rs1228283957 1843 dbSNP
rs886364388 1846 dbSNP
rs1323890428 1857 dbSNP
rs1027461846 1864 dbSNP
rs1285571417 1868 dbSNP
rs754567854 1872 dbSNP
rs201518427 1873 dbSNP
rs67116771 1873 dbSNP
rs200533981 1874 dbSNP
rs201933834 1874 dbSNP
rs72028560 1875 dbSNP
rs201652143 1876 dbSNP
rs905931347 1882 dbSNP
rs1044904847 1883 dbSNP
rs1454513947 1885 dbSNP
rs1411290984 1893 dbSNP
rs77166456 1894 dbSNP
rs1161190812 1898 dbSNP
rs1379291014 1905 dbSNP
rs932011054 1906 dbSNP
rs895780159 1915 dbSNP
rs1053055119 1920 dbSNP
rs1268158069 1924 dbSNP
rs1200094411 1940 dbSNP
rs1301610260 1942 dbSNP
rs72975515 1945 dbSNP
rs976167729 1946 dbSNP
rs1446612416 1952 dbSNP
rs1242630920 1958 dbSNP
rs375951446 1962 dbSNP
rs1284992525 1968 dbSNP
rs940732455 1969 dbSNP
rs926223979 1970 dbSNP
rs1262828614 1977 dbSNP
rs181886561 1978 dbSNP
rs1462645295 1980 dbSNP
rs1222114738 1988 dbSNP
rs10194289 1996 dbSNP
rs1437383796 1997 dbSNP
rs932842144 2007 dbSNP
rs1284441792 2013 dbSNP
rs1413403452 2026 dbSNP
rs191071968 2031 dbSNP
rs567096360 2039 dbSNP
rs1454017621 2040 dbSNP
rs1317796027 2041 dbSNP
rs990742191 2053 dbSNP
rs1382988667 2062 dbSNP
rs1387466416 2063 dbSNP
rs1322273354 2064 dbSNP
rs1367251480 2071 dbSNP
rs1217537061 2080 dbSNP
rs755857057 2082 dbSNP
rs965827192 2084 dbSNP
rs1325555066 2108 dbSNP
rs1467995763 2112 dbSNP
rs75391548 2114 dbSNP
rs1456280241 2119 dbSNP
rs999246906 2122 dbSNP
rs983129259 2142 dbSNP
rs750033762 2147 dbSNP
rs767421262 2149 dbSNP
rs1176990460 2156 dbSNP
rs1430824759 2162 dbSNP
rs902302045 2165 dbSNP
rs1021984426 2169 dbSNP
rs1478977891 2172 dbSNP
rs761677891 2179 dbSNP
rs552841123 2180 dbSNP
rs879526404 2183 dbSNP
rs1012199719 2202 dbSNP
rs757139554 2206 dbSNP
rs893298292 2210 dbSNP
rs1285228139 2211 dbSNP
rs950592783 2214 dbSNP
rs1223969733 2218 dbSNP
rs1277481438 2220 dbSNP
rs532658970 2223 dbSNP
rs1337434258 2224 dbSNP
rs1027599410 2233 dbSNP
rs148457449 2233 dbSNP
rs200570584 2243 dbSNP
rs932214245 2243 dbSNP
rs555009865 2256 dbSNP
rs1192391095 2263 dbSNP
rs139766882 2270 dbSNP
rs1040369820 2271 dbSNP
rs186215384 2272 dbSNP
rs1168823789 2282 dbSNP
rs1390507723 2284 dbSNP
rs1202690423 2297 dbSNP
rs905727981 2300 dbSNP
rs1022798899 2302 dbSNP
rs751296587 2306 dbSNP
rs895915624 2311 dbSNP
rs1366502467 2327 dbSNP
rs1399463638 2336 dbSNP
rs1296474109 2343 dbSNP
rs907982742 2350 dbSNP
rs1229558233 2353 dbSNP
rs764140006 2354 dbSNP
rs1355398212 2355 dbSNP
rs1243240383 2357 dbSNP
rs1293491922 2362 dbSNP
rs930506058 2366 dbSNP
rs1228308558 2372 dbSNP
rs1043029 2373 dbSNP
rs776803133 2376 dbSNP
rs1194548189 2382 dbSNP
rs1368188563 2383 dbSNP
rs560638703 2389 dbSNP
rs1165926489 2397 dbSNP
rs1386069482 2399 dbSNP
rs932832482 2403 dbSNP
rs1419369222 2406 dbSNP
rs115792278 2410 dbSNP
rs546886656 2417 dbSNP
rs944410715 2419 dbSNP
rs977753428 2434 dbSNP
rs1318897709 2435 dbSNP
rs1337221073 2438 dbSNP
rs911662436 2439 dbSNP
rs983099849 2447 dbSNP
rs950394968 2455 dbSNP
rs1316959619 2464 dbSNP
rs1027566745 2465 dbSNP
rs1359624169 2470 dbSNP
rs973769545 2472 dbSNP
rs1022499631 2473 dbSNP
rs760892681 2491 dbSNP
rs773491505 2494 dbSNP
rs1167281269 2501 dbSNP
rs1010622550 2510 dbSNP
rs893298806 2521 dbSNP
rs1023188133 2526 dbSNP
rs1256051855 2529 dbSNP
rs1029138670 2532 dbSNP
rs13402301 2535 dbSNP
rs1439261226 2540 dbSNP
rs1443690709 2542 dbSNP
rs1365545255 2544 dbSNP
rs1244127244 2548 dbSNP
rs748597166 2549 dbSNP
rs1401387891 2557 dbSNP
rs1468205328 2559 dbSNP
rs1040630288 2564 dbSNP
rs763601192 2568 dbSNP
rs940709656 2578 dbSNP
rs886431393 2579 dbSNP
rs1049618097 2580 dbSNP
rs1272863541 2584 dbSNP
rs930704461 2585 dbSNP
rs1344331977 2589 dbSNP
rs774550553 2603 dbSNP
rs769239731 2611 dbSNP
rs1264076598 2647 dbSNP
rs372227136 2651 dbSNP
rs545303578 2656 dbSNP
rs1198212608 2657 dbSNP
rs939171542 2657 dbSNP
rs1383848361 2661 dbSNP
rs1284545164 2669 dbSNP
rs904571165 2671 dbSNP
rs573026655 2673 dbSNP
rs533401166 2676 dbSNP
rs966358409 2677 dbSNP
rs1410474156 2681 dbSNP
rs997473973 2687 dbSNP
rs1296286214 2694 dbSNP
rs1371855389 2695 dbSNP
rs900095928 2701 dbSNP
rs749713268 2702 dbSNP
rs1343108353 2704 dbSNP
rs989654290 2708 dbSNP
rs369235982 2711 dbSNP
rs1317899273 2713 dbSNP
rs35206193 2716 dbSNP
rs779728776 2720 dbSNP
rs996369660 2725 dbSNP
rs1198599566 2729 dbSNP
rs533926856 2732 dbSNP
rs75179573 2740 dbSNP
rs147285577 2741 dbSNP
rs12055 2742 dbSNP
rs1484358348 2751 dbSNP
rs928955594 2755 dbSNP
rs1429879637 2763 dbSNP
rs920218235 2766 dbSNP
rs973102848 2767 dbSNP
rs886439915 2770 dbSNP
rs1221900576 2775 dbSNP
rs1360282427 2776 dbSNP
rs1302147685 2778 dbSNP
rs1363400616 2783 dbSNP
rs1406234044 2819 dbSNP
rs759172572 2823 dbSNP
rs745364388 2831 dbSNP
rs1213358487 2834 dbSNP
rs895258283 2839 dbSNP
rs34977209 2844 dbSNP
rs569485811 2845 dbSNP
rs564449925 2846 dbSNP
rs1055616911 2857 dbSNP
rs1490915745 2859 dbSNP
rs1223277055 2862 dbSNP
rs1262607257 2876 dbSNP
rs1410354824 2879 dbSNP
rs993056855 2882 dbSNP
rs1352302844 2884 dbSNP
rs1300721003 2887 dbSNP
rs1421299320 2888 dbSNP
rs1428890266 2891 dbSNP
rs558853201 2893 dbSNP
rs1162760663 2901 dbSNP
rs939223800 2902 dbSNP
rs868430937 2906 dbSNP
rs557300861 2907 dbSNP
rs959898441 2911 dbSNP
rs1403745111 2918 dbSNP
rs1429166149 2919 dbSNP
rs775887575 2919 dbSNP
rs1031714355 2936 dbSNP
rs1363357422 2946 dbSNP
rs1452342610 2954 dbSNP
rs539344985 2957 dbSNP
rs1042288983 2959 dbSNP
rs1361807681 2962 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agauuguggUGUCA-CACCAAAc 5'
                   :::|| ||||||| 
Target 5' ---ccaaagGUGGUGGUGGUUU- 3'
1 - 19
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000390645.2 | 3UTR | CCAAAGGUGGUGGUGGUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.526 4.1e-3 -0.370 3.8e-2 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.502 5.3e-3 0.616 5.2e-4 25 Click to see details
GSE28260 Renal cortex and medulla -0.574 2.0e-2 -0.424 7.4e-2 13 Click to see details
GSE32688 Pancreatic cancer -0.23 1.0e-1 -0.179 1.6e-1 32 Click to see details
GSE42095 Differentiated embryonic stem cells 0.27 1.1e-1 0.240 1.4e-1 23 Click to see details
GSE21687 Ependynoma primary tumors 0.125 1.6e-1 0.095 2.3e-1 64 Click to see details
GSE17498 Multiple myeloma -0.094 2.8e-1 -0.107 2.6e-1 40 Click to see details
GSE38226 Liver fibrosis -0.123 3.0e-1 -0.312 8.4e-2 21 Click to see details
GSE26953 Aortic valvular endothelial cells 0.097 3.3e-1 0.080 3.6e-1 24 Click to see details
GSE19350 CNS germ cell tumors 0.118 3.6e-1 0.105 3.7e-1 12 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.025 4.6e-1 0.334 7.5e-2 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.025 4.6e-1 0.334 7.5e-2 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.025 4.6e-1 0.334 7.5e-2 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
PRAD -0.405 0 -0.463 0 46 Click to see details
LUSC 0.291 0.06 0.296 0.06 30 Click to see details
UCEC -0.334 0.1 -0.156 0.28 16 Click to see details
LIHC 0.203 0.14 0.280 0.07 30 Click to see details
KICH 0.194 0.24 0.425 0.06 15 Click to see details
LUAD -0.489 0.26 -0.800 0.1 4 Click to see details
CHOL -0.3 0.28 -0.600 0.1 6 Click to see details
THCA 0.075 0.31 0.094 0.27 45 Click to see details
ESCA 0.153 0.34 0.321 0.18 10 Click to see details
PAAD -0.32 0.34 -0.800 0.1 4 Click to see details
BRCA 0.056 0.36 0.044 0.39 42 Click to see details
HNSC 0.088 0.36 0.183 0.23 18 Click to see details
KIRC -0.054 0.37 -0.028 0.43 43 Click to see details
STAD 0.077 0.37 0.074 0.37 21 Click to see details
BLCA 0.246 0.38 0.600 0.2 4 Click to see details
KIRP -0.033 0.44 0.019 0.47 21 Click to see details
KIRP -0.033 0.44 0.019 0.47 21 Click to see details
KIRP -0.033 0.44 0.019 0.47 21 Click to see details
KIRP -0.033 0.44 0.019 0.47 21 Click to see details
95 hsa-miR-497-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092955 CYP2U1 cytochrome P450 family 2 subfamily U member 1 2 4
MIRT124568 PRRC2B proline rich coiled-coil 2B 2 2
MIRT125196 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT147296 KPNA2 karyopherin subunit alpha 2 2 8
MIRT163999 KIAA1109 KIAA1109 2 4
MIRT252495 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT357969 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT443007 TRIOBP TRIO and F-actin binding protein 2 2
MIRT443524 NETO1 neuropilin and tolloid like 1 2 2
MIRT443573 EVX2 even-skipped homeobox 2 2 2
MIRT443656 BACH1 BTB domain and CNC homolog 1 2 2
MIRT460670 KRT10 keratin 10 2 8
MIRT464761 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT465032 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT465040 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT468667 SEC62 SEC62 homolog, preprotein translocation factor 2 2
MIRT473694 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT477618 EFNA3 ephrin A3 2 2
MIRT480506 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT480592 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT486915 ZNF398 zinc finger protein 398 2 6
MIRT487770 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT493265 MDFIC MyoD family inhibitor domain containing 2 2
MIRT495271 SLC1A2 solute carrier family 1 member 2 2 4
MIRT495309 CHST12 carbohydrate sulfotransferase 12 2 2
MIRT496681 DPP6 dipeptidyl peptidase like 6 2 4
MIRT496891 FOXP1 forkhead box P1 2 2
MIRT497330 IRF4 interferon regulatory factor 4 2 2
MIRT498272 KIAA1644 KIAA1644 2 2
MIRT498634 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT500581 USP53 ubiquitin specific peptidase 53 2 2
MIRT500751 TMPPE transmembrane protein with metallophosphoesterase domain 2 6
MIRT509668 ZNF354B zinc finger protein 354B 2 10
MIRT510919 PSMA2 proteasome subunit alpha 2 2 4
MIRT519118 CEP76 centrosomal protein 76 2 2
MIRT526193 ABCG2 ATP binding cassette subfamily G member 2 (Junior blood group) 2 2
MIRT526746 HLA-DOB major histocompatibility complex, class II, DO beta 2 2
MIRT527270 FBLN2 fibulin 2 2 2
MIRT528198 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT528330 TBC1D22B TBC1 domain family member 22B 2 2
MIRT530346 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT533627 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT533738 TMEM200C transmembrane protein 200C 2 2
MIRT533779 TMEM133 transmembrane protein 133 2 2
MIRT534317 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT538438 COG5 component of oligomeric golgi complex 5 2 2
MIRT539156 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT539474 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT539620 SHISA9 shisa family member 9 2 2
MIRT539650 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540346 OPHN1 oligophrenin 1 2 2
MIRT540412 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541200 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT541395 CDC27 cell division cycle 27 2 2
MIRT546443 SNX5 sorting nexin 5 2 2
MIRT547369 MSI2 musashi RNA binding protein 2 2 2
MIRT553288 TSPAN3 tetraspanin 3 2 2
MIRT554402 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT557822 FOXN2 forkhead box N2 2 2
MIRT568530 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT569508 THYN1 thymocyte nuclear protein 1 2 2
MIRT570707 FAM69A family with sequence similarity 69 member A 2 2
MIRT608376 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608483 NKTR natural killer cell triggering receptor 2 6
MIRT613533 TRA2B transformer 2 beta homolog 2 2
MIRT616601 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT618166 DUSP18 dual specificity phosphatase 18 2 2
MIRT632059 CEP135 centrosomal protein 135 2 2
MIRT647379 ZDHHC23 zinc finger DHHC-type containing 23 2 2
MIRT648366 POTED POTE ankyrin domain family member D 2 2
MIRT651075 ZNF518B zinc finger protein 518B 2 4
MIRT653618 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653636 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654895 POU2F1 POU class 2 homeobox 1 2 2
MIRT656232 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT659880 CAPRIN1 cell cycle associated protein 1 2 2
MIRT660526 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT666286 SLC30A3 solute carrier family 30 member 3 2 2
MIRT686808 SNX2 sorting nexin 2 2 4
MIRT695302 TK1 thymidine kinase 1 2 2
MIRT699737 SERINC3 serine incorporator 3 2 2
MIRT700794 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT712270 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT712617 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT714264 RPL10A ribosomal protein L10a 2 2
MIRT715072 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715386 TADA3 transcriptional adaptor 3 2 2
MIRT716397 NPAS1 neuronal PAS domain protein 1 2 2
MIRT725328 NFASC neurofascin 2 2
MIRT725503 GANAB glucosidase II alpha subunit 2 2
MIRT732913 IRAK2 interleukin 1 receptor associated kinase 2 3 0
MIRT734890 SMAD3 SMAD family member 3 3 0
MIRT737328 LINC02476 long intergenic non-protein coding RNA 2476 3 0
MIRT737544 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 4 0
MIRT755545 PAK1 p21 (RAC1) activated kinase 1 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-497 Bufalin NULL 9547215 Quantitative real-time PCR colorectal cancer HCT116 cells 24375248 2014 up-regulated
miR-497 Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 up-regulated
miR-497 Ethanol NULL 702 Quantitative real-time PCR CIE10 22141737 2012 up-regulated
miR-497 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 up-regulated
miR-497 Reversine NULL 210332 Microarray C2C12 myoblast cells 24513286 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-497 Tamoxifen 2733525 NSC180973 approved sensitive Low Breast Cancer cell line (MCF-7, T47D)
hsa-mir-497 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-497 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-497 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-497 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-mir-497 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-497-3p Mitoxantrone 4212 NSC279836 approved sensitive High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-497-3p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231, MCF-7)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, PC-9)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant Low Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-497-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-497-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant tissue
hsa-miR-497-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-497-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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