pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol AMER1   
Synonyms FAM123B, OSCS, WTX
Description APC membrane recruitment protein 1
Transcript NM_152424   
Expression
Putative miRNA Targets on AMER1
3'UTR of AMER1
(miRNA target sites are highlighted)
>AMER1|NM_152424|3'UTR
   1 TTATTATCAATTCTGGAGTAGGGACACGGGGCCTGAGCATGTGAATGGGGATCAGGGGTTGGGCAGAAGGGTGGGGGGGT
  81 GGGGGTTGTTGTTTAACTTGAAAACCCTTTGGGCCAAGGAAAACTCCTGTGAGTTTTCACCTTGGTTTTCCCACTTGCCT
 161 CTTCTGCCATCTATGGCCACGTTCAACTCAAGTGCATCTGCCCAGGGAGGCTGCTGCTGCTACTGCACTCCAGTTTTTGC
 241 TTTCGAGGTTTCTTCTTGTGACCCACGCTGGGTTTGGGATGCTGTAATTTTGTGCCTATTCCAGTTGCCAAGTTAGTGAT
 321 TATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACACACACACACACATACATA
 401 CACACACACACACAAACACACATGCACACACATATATAGCATGCATCCTTGACACAGGCTAAACCTTTAGTGCCCCCTGC
 481 CCCTTTCCCCCAATGAATGATGAACCACTGATTAGCAGCCAAGTCTGCATTGCCTCCCGCTTGGGGAAGTGGGGCTTATT
 561 TGCTATTAGCAATGTGAAATTATGGTACAGATCCTCCCCACCCCTATTCCTTTTGGCCTGGCATAGCTGCCATCATTATA
 641 TCAGATGACTATAAGCTATTCATCCCAGCTAGCTGTCCTTAGAGAGGATCAAGTAGCGTGTGTCTCACAGCCTATCGCTG
 721 TGGACTTTGGCATCATGACCAGATGGGGGCCTTTTAACTGTCCTGCCATAGCTTGGGTTAAAGACAAAAATGCTAATCCC
 801 CTTGATGGAGTGATAAAATTCATCCATTTGCAAACAGAAGACAAAACAAGGTTCTGTTGTGGACACTGCCATAGAGTGTT
 881 GAGCTCCGGAATGATAGGATTTTTTTTCCTTCTTTTAAGCTTGTGACTACCTGAGTTGCAGATGCTTTTGAATTTTTGTT
 961 CTTTTTTCCTCTAAAGGAAATTTTCATAATCTCATCACAAGGAACACGGTCTTTTAATTGAGATAAGGGAAGAGAAGCAA
1041 CCTAAATTAGGCTTGACTATAGGGGCTGGGGTTTTTGTGGAGTGTAGGGGAAAGATAGAAAATGAGGGTCCATTTATCAC
1121 AGCCAGCAAGAAAGGGGATTTCAGACCATGCAGAGCTTAAGGTATCTCAGTTTCTTAAAAGGGAAAACTCCCTTCTCAAG
1201 CCTCCCAACACAAAATGTTCCTTAAGCCTTGCCCATCCCATCATTTGGACTCTGTAATAAGGCCCCAGGTTTGCACTCCC
1281 AAGACAGGATACCAAAGGCATCTCAGCTGCTGTTCTGGGCCCTTTAAAGAGCTTTTATCTTCCAATTAGCCGAGTCCTTA
1361 GCATCATCAAATGACAGGGCTTCTTGGCAGTTGCAGCCCTTTATGGAATGAATGGCACCCTCCCTTCTCCTGCATCCATG
1441 CAGTTTTCATGTTAAACTAGGTTGGAAATACTGGTGGGGAAGAGCTTGCTGTCAGGAAGACATTGGAACAGGCTAATCTT
1521 GCCAAGCTCAACCTCTCATTAATCACCTGTAGGAGAGGGTTCCTTTTACATGTCTTTATTGGAAATGGCATATGGAACAT
1601 TTTTTGCTTGGCTGTGTTCACTCAAATTATGATTATTGCACCCTCGCCCTCACATCCCACCATCTCCATGCCTGTTGAGA
1681 GAAGAAGTCAACAGGGTTCTTGCCATTCCTGAGATATGGCAATTTAGCTTGGGAACAGATGCTGTTTGCCCCCTAAGTCA
1761 AGGTGACTTTGTGGGCAAACTGTTTCTTGGCCAGGGGATGTGTCCATGCTGGTCTTTGTCACCATTTCTCAGATTGGGGT
1841 TGGCCCAGTGCCCTTACTCACAAATAGCAGACCTGGCTGGTAGAAGCTGCACCCCTGGAAGCACCACATGAATTTGCATG
1921 GCACTAACACCACCACTCAAGGGACCCAGACCAGCTCTTCAGGCTGACTTTGGCTACAGATACATTGTGAAGAAATGTAT
2001 CTGTTGTGGAGCTGGAGAATGAAAGAGGGTGAGGAAGGCCCTCCTTACCCCAAGCACAGCATTCCAAGAGAGAAGTGCCC
2081 AAATTCCAACTTTCTGGCCTCTTACCAAAGCTGCTCTGGGATGGTGGGGCTGAAATTGGCCTGGCTATTTGGCAGGAAGT
2161 AAACACTCACCAAATGCCTTTACAACAGGGAAGAACCCACCTCTTGCCTCTTCTTTCAGGGCAGCTTGAGCTCCTGTCTA
2241 CATGTGGACTGTGCCAGCCACAGCAGGCGGTAGAGCCATCACCAGCCTCCAGACCCTGCTGGAGAAGGGCCACCAGCCTA
2321 TCTGGGAAGAGAAAAAGGAGGTGGCCAACCTTTGGCTAAGGGCTGAGAGCTGCCCTCAGGATCAGGAAGGCAGCATGAGG
2401 CATTGTCTCTGAGGGGCACTGGCATAGCCCTGACACACTTTGTTGGGCTTTGGAAGGTCACACACCACAGAGTAGGGCCT
2481 GGGGCTGAGTGAGAGTTCATGGTTTGGACAGCCTTGCTGCCTGCAAGTCCCTTCACTGCCCTAGCCAGCCCAGGAATAGG
2561 ATCCTTACCACCTGAAGTGGGGCAGCCAGGATATGTGGCTGCAGAAGCAGGTTCCTTTGAATTTCTAGAGCTAAGCAGTT
2641 TGTGGCTGAAACCCAATGGCAGCCTAGGGGAGGAAGGAAGACCTGTCTGGGGACCCATGGTGTTGACAGCACAGGGTGAC
2721 ATTGGGAGAGCCAGCCAAGCTTCAGGCCTGTTTCCAAACACAGACTAGTGCTGGCTTGGGTGGCAGCAAATACACCCCAG
2801 ACCACTAAAACTGTTGATATCATGTCCACACCTCCAAGAGTACTACTAGATGAACAACATGTCTCCATTGCAAGGTCCTG
2881 GAATAATGCTTTTGGATGTGATTTTAAGGGAAAATGGGACTTAGTGGAAGTAGCTGCCTTCATCTTATTACCCAATAGGC
2961 CTAGTGCCAGACAGCTGTGATCCTGAGAATTCCCAGATGAGACTGGTCCTTGGAGGACCAGTGAATGTGGATAGAGAAGG
3041 CCACCTAGTAGGCCTCTCCCAGGGCCAGGATGCCAGTTTCTTGGTGCTTTAGAGTCTCCAAGGAAGCACTGCCTTGGGGC
3121 CCAGTTCAAGCCAGCCCTACCTATCTGGCCTCAGCTTGGGTACCAGGCCACAAGACTGCCCGGATAATGGGTTCAGTAAA
3201 CACCAGTCTCTCTCCCTCCTTAGTCCTATGCCAAGAAGGGAAGTAGCTTCACACACTCAGGAGGCTGGGTGTGTACCCTT
3281 CATCCTGCTGCCAGCAGCTTTCCTTACCTGTGCCAGTGCCACCACCCCACCTGCCCTCAGCCCCCAGGCCCAGTTGCTAG
3361 AGGGAGGCATGGGGTTTAGCAGGGAGACTTCAAGTTTACCCATGTGTATGTTGCATTCAAGTTGTTTTTAATATATATAT
3441 ATATATATATCAAAAGTCAATTATCTATTTTTATATTGTTTGCATTTTATATTCATGGAAAACAATGTTTATCAATTGTT
3521 CTTTTCTGATTTATTTTTAAGCGGTGCTGTTTACAGTTTTAAACAAAACAAAGATGACACAAAAATTGCTGCTGCTTGTG
3601 CAGAGGGCTGGCATCTCAACTGCCTAGGGCCCTCCCTCTTTCCCCTCTCCCTACCTTAGCTGTACCACACTGTCCGTTCC
3681 CTCCCCCCATGATAGGGACAGCAGAAGATGCCCAGGTACTGAAGACAAACGCCAAGTGACTCAGGCGTGTGGGACCTGGT
3761 AGACAGCTTGTCATTTTCTGGCTTTATTTTATGTTTTTCTTTCTTTTGAACCCTTCTTCCCCATGTCTAGACCCTCTGAG
3841 AGTACTCATGTGTCTTATTTTTTTTCCTCGTTATGTTTTGTGCTTTAGTTTTGAAATCAGAGTGCCCATGTTGTGCTATT
3921 TGTCTTGTTGAGTTTCTCCAAAGGAGCATTTTGGGAACATTCTCCACCCAATGGGGAAGGAAGGGGGTTTCAACCATGTC
4001 CCCTTTCCCCAAGAAGCTGTGGGAGACAGATGACAATGATGCTTGCACTATCAGGAATTTACCATCTCGTTGAGGAAACC
4081 CTTGCATAGGACTTCCTAGGAGCTCAGTTGATTGTGACATTTTCCCAGAAGAGAGGCTTTGGGGAACTCCTTCACCCCTC
4161 TTGCTGCTTTGGGGGAATCTCCTCCCCTACCACCATTCCCCCTCCCCTGCCCTGCTCCAGCTCACACGTGGATGGTACTT
4241 TGGGGAACAGTGACTTTCAGGGTGATGGCTTGCTGGCCTGATCCCTGACTTTCCAATCCTATAGTCACTCCAAAGAAGAA
4321 AATCCACATGGTATGTATATGTGTGAGGGTTGGGTCTATTGAGAGGTGGGACTTTAATTATTGTTATTATTATTGGTGCT
4401 TATTTTTCCTGCTGTATATGGGGGTGGGGGTGGGGGGGAATAAAACAGGAATGTATATTTAGGTCATGTTAAATAAAATG
4481 GCTGGAGGAAGGAGGGAAGAAATTAGGAACTGCAGTACATCATCACCCCAGGTGTAAGAGTTATTTCTCTCCCAGTGCAG
4561 AAAGGGGAGTGTGGCCCCTGGCTGTACCTGAGCTTCCTCTTCTCCATCCCTGAGACATCACAGAATCACCCGGGTTCTGA
4641 CCTCTCCACTTCTAGCTCTCACTGACATCTGGATATCTTGATGCACTGCCTGTTTGTAACAACATATACTTCTTTGCTGA
4721 ATGCTAATAAACTTCTGGGTTCAAGAGGGAACCCCTCAGTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucggucgguuGAGUGUCACGUCu 5'
                    ||| |||||||| 
Target 5' agttatttctCTCCCAGTGCAGa 3'
4539 - 4561 157.00 -20.40
2
miRNA  3' ucGGU-C-GGUUGAGUGUCACGUcu 5'
            ||| | :||||||| ||||||  
Target 5' ggCCACGTTCAACTCA-AGTGCAtc 3'
175 - 198 152.00 -21.30
3
miRNA  3' ucggucgguugagugUCACGUCu 5'
                         ||||:|| 
Target 5' ctggggtttttgtggAGTGTAGg 3'
1066 - 1088 124.00 -11.00
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774381591 4 dbSNP
rs1461270928 5 dbSNP
rs768789626 7 dbSNP
rs1351268252 8 dbSNP
rs1461251173 10 dbSNP
rs1163019569 12 dbSNP
rs1249199210 14 dbSNP
rs200923986 19 dbSNP
rs1486581554 20 dbSNP
rs772094541 24 dbSNP
rs775426593 27 dbSNP
rs745699635 28 dbSNP
rs1316886146 29 dbSNP
rs780959497 31 dbSNP
rs1381875275 32 dbSNP
rs1298249751 37 dbSNP
rs770546383 50 dbSNP
rs1180735663 53 dbSNP
rs913516302 54 dbSNP
rs1259603851 59 dbSNP
rs990817932 60 dbSNP
rs1346580538 61 dbSNP
rs1284320172 62 dbSNP
rs1225139222 64 dbSNP
rs1348054100 65 dbSNP
rs1278152856 66 dbSNP
rs761049370 68 dbSNP
rs1420388858 69 dbSNP
rs750946466 72 dbSNP
rs1315409925 73 dbSNP
rs772303000 73 dbSNP
rs1232351255 74 dbSNP
rs1483436070 75 dbSNP
rs1184917581 78 dbSNP
rs950830529 79 dbSNP
rs1164183347 80 dbSNP
rs865865393 80 dbSNP
rs1413446414 81 dbSNP
rs1374946963 83 dbSNP
rs1374118055 86 dbSNP
rs1416491207 86 dbSNP
rs1470967406 86 dbSNP
rs767652148 110 dbSNP
rs1407823980 126 dbSNP
rs1008386457 144 dbSNP
rs890921342 163 dbSNP
rs1411135409 166 dbSNP
rs1028144587 168 dbSNP
rs1354732209 180 dbSNP
rs1448755028 181 dbSNP
rs1285701873 190 dbSNP
rs1158200336 194 dbSNP
rs762045374 196 dbSNP
rs1212977041 201 dbSNP
rs761967224 203 dbSNP
rs903701619 227 dbSNP
rs1044013137 231 dbSNP
rs1255563985 233 dbSNP
rs1185778621 239 dbSNP
rs1485276533 244 dbSNP
rs1188895927 245 dbSNP
rs1242227321 250 dbSNP
rs959558342 266 dbSNP
rs1474651609 267 dbSNP
rs1166894274 268 dbSNP
rs774679801 271 dbSNP
rs1431314973 278 dbSNP
rs1171197644 284 dbSNP
rs1374363298 292 dbSNP
rs1396515905 304 dbSNP
rs1336115955 316 dbSNP
rs1324428649 317 dbSNP
rs1429775435 321 dbSNP
rs1297066085 322 dbSNP
rs1444764894 328 dbSNP
rs1366183326 331 dbSNP
rs1283200897 332 dbSNP
rs1213896063 335 dbSNP
rs1335979221 337 dbSNP
rs1201473508 339 dbSNP
rs1281358959 339 dbSNP
rs1445585866 340 dbSNP
rs386417044 340 dbSNP
rs10628043 341 dbSNP
rs1191415458 341 dbSNP
rs763256131 341 dbSNP
rs1320971882 342 dbSNP
rs1360103653 342 dbSNP
rs1382714336 342 dbSNP
rs1390609321 343 dbSNP
rs1437515810 343 dbSNP
rs775106309 343 dbSNP
rs1234077371 344 dbSNP
rs1276750577 344 dbSNP
rs1349158944 345 dbSNP
rs1208697915 346 dbSNP
rs1211393171 346 dbSNP
rs1269140502 346 dbSNP
rs1466547778 346 dbSNP
rs1295444245 347 dbSNP
rs1232028712 348 dbSNP
rs1200354428 349 dbSNP
rs1378994174 350 dbSNP
rs1270856142 351 dbSNP
rs1433055889 352 dbSNP
rs868572470 353 dbSNP
rs866789986 355 dbSNP
rs1462145953 356 dbSNP
rs1390277925 357 dbSNP
rs866473703 357 dbSNP
rs1162479474 358 dbSNP
rs867711555 359 dbSNP
rs1420073047 360 dbSNP
rs199713693 361 dbSNP
rs5964738 363 dbSNP
rs57262707 364 dbSNP
rs1163804458 365 dbSNP
rs1165245918 365 dbSNP
rs1182760044 365 dbSNP
rs1205241247 365 dbSNP
rs1211306935 365 dbSNP
rs1231861130 365 dbSNP
rs1247775520 365 dbSNP
rs1265283633 365 dbSNP
rs1289559013 365 dbSNP
rs1331590370 365 dbSNP
rs1368878394 365 dbSNP
rs1414114196 365 dbSNP
rs1468777945 365 dbSNP
rs1474221031 365 dbSNP
rs1482453007 365 dbSNP
rs1488599597 365 dbSNP
rs567386357 365 dbSNP
rs5918540 365 dbSNP
rs1167099597 367 dbSNP
rs1169296092 367 dbSNP
rs1181260732 367 dbSNP
rs1256536457 367 dbSNP
rs1388565703 367 dbSNP
rs1407150951 367 dbSNP
rs1425368577 367 dbSNP
rs1484633399 367 dbSNP
rs867354549 367 dbSNP
rs1293956984 369 dbSNP
rs1302796183 369 dbSNP
rs1380295702 369 dbSNP
rs1398157536 369 dbSNP
rs1464962478 369 dbSNP
rs868236960 369 dbSNP
rs867520710 371 dbSNP
rs1240992043 373 dbSNP
rs1276132100 373 dbSNP
rs1345148612 373 dbSNP
rs1184546867 375 dbSNP
rs1209289757 375 dbSNP
rs1247258751 375 dbSNP
rs1274766664 375 dbSNP
rs1484079402 375 dbSNP
rs1449055372 377 dbSNP
rs1189506574 379 dbSNP
rs1392044775 380 dbSNP
rs548962051 385 dbSNP
rs891758313 389 dbSNP
rs1469496797 391 dbSNP
rs1275444056 392 dbSNP
rs1212144986 393 dbSNP
rs1175889958 395 dbSNP
rs1207825398 395 dbSNP
rs1250136310 395 dbSNP
rs1318924422 395 dbSNP
rs1388431935 395 dbSNP
rs1435305808 395 dbSNP
rs1468092657 395 dbSNP
rs867107024 395 dbSNP
rs1190683662 397 dbSNP
rs751390282 397 dbSNP
rs769633987 399 dbSNP
rs1321484286 401 dbSNP
rs1053158030 403 dbSNP
rs1458101676 403 dbSNP
rs745734937 403 dbSNP
rs938765142 404 dbSNP
rs1293571669 405 dbSNP
rs1435397099 405 dbSNP
rs1369164773 407 dbSNP
rs1226445687 409 dbSNP
rs1287679121 415 dbSNP
rs1329517715 415 dbSNP
rs1355604220 415 dbSNP
rs1450054732 415 dbSNP
rs770424850 415 dbSNP
rs776607488 415 dbSNP
rs1274408218 419 dbSNP
rs1489525864 423 dbSNP
rs746561988 424 dbSNP
rs928746669 427 dbSNP
rs1216805098 429 dbSNP
rs5964348 439 dbSNP
rs1360019717 446 dbSNP
rs1473238874 458 dbSNP
rs1161822350 464 dbSNP
rs980224252 477 dbSNP
rs1412128084 481 dbSNP
rs188858579 493 dbSNP
rs200234328 506 dbSNP
rs1296906903 508 dbSNP
rs1441957746 519 dbSNP
rs1407456287 527 dbSNP
rs920109533 531 dbSNP
rs1351016953 538 dbSNP
rs982364944 539 dbSNP
rs961581958 543 dbSNP
rs1282191759 553 dbSNP
rs757940675 555 dbSNP
rs971438605 567 dbSNP
rs1323663807 577 dbSNP
rs1457275926 579 dbSNP
rs974689990 588 dbSNP
rs961687178 591 dbSNP
rs1172506989 601 dbSNP
rs1361609103 602 dbSNP
rs1203096892 609 dbSNP
rs1274100565 610 dbSNP
rs1483649556 614 dbSNP
rs1185034731 623 dbSNP
rs1236038403 632 dbSNP
rs747868862 634 dbSNP
rs1472692737 643 dbSNP
rs1015674388 658 dbSNP
rs1418200728 661 dbSNP
rs1193636491 664 dbSNP
rs1415521078 669 dbSNP
rs1427486123 670 dbSNP
rs1167407372 677 dbSNP
rs1370691908 681 dbSNP
rs780218507 686 dbSNP
rs780705386 687 dbSNP
rs986508847 694 dbSNP
rs756518696 697 dbSNP
rs891556954 698 dbSNP
rs1032792754 708 dbSNP
rs1028046629 716 dbSNP
rs755930835 717 dbSNP
rs750956765 720 dbSNP
rs1342987895 732 dbSNP
rs1198030976 736 dbSNP
rs1207275750 742 dbSNP
rs1442142397 748 dbSNP
rs1022137926 749 dbSNP
rs1363053012 750 dbSNP
rs11380304 758 dbSNP
rs201773901 759 dbSNP
rs1009889618 760 dbSNP
rs1447249994 761 dbSNP
rs892421021 767 dbSNP
rs757385889 768 dbSNP
rs1187566885 773 dbSNP
rs1390217567 774 dbSNP
rs1450803307 775 dbSNP
rs1170683513 793 dbSNP
rs751639039 796 dbSNP
rs1415040066 804 dbSNP
rs1235041806 815 dbSNP
rs1386244906 820 dbSNP
rs1433103994 821 dbSNP
rs1297182380 839 dbSNP
rs1038961341 842 dbSNP
rs1229717479 843 dbSNP
rs767739496 860 dbSNP
rs907224138 872 dbSNP
rs890413015 874 dbSNP
rs1044433486 882 dbSNP
rs764297331 887 dbSNP
rs142172661 888 dbSNP
rs1265336315 897 dbSNP
rs1463849496 899 dbSNP
rs1207642959 903 dbSNP
rs1248277442 908 dbSNP
rs775793027 908 dbSNP
rs1196128251 917 dbSNP
rs1299629921 919 dbSNP
rs1439934370 925 dbSNP
rs929351735 932 dbSNP
rs184461050 941 dbSNP
rs1038575618 943 dbSNP
rs1456512502 945 dbSNP
rs1174167886 960 dbSNP
rs973480721 961 dbSNP
rs940250788 979 dbSNP
rs1384197171 989 dbSNP
rs1436118803 992 dbSNP
rs1330644336 999 dbSNP
rs926802756 1005 dbSNP
rs1285760479 1006 dbSNP
rs192160710 1007 dbSNP
rs1228152440 1008 dbSNP
rs982734547 1012 dbSNP
rs1352356856 1016 dbSNP
rs987474292 1024 dbSNP
rs1265996310 1035 dbSNP
rs1451705051 1059 dbSNP
rs955001616 1060 dbSNP
rs1174977687 1077 dbSNP
rs1024362283 1092 dbSNP
rs920934986 1096 dbSNP
rs111885962 1103 dbSNP
rs1159617809 1108 dbSNP
rs1251729749 1136 dbSNP
rs1179251245 1150 dbSNP
rs1479952747 1156 dbSNP
rs1455518124 1161 dbSNP
rs955716012 1174 dbSNP
rs975126422 1181 dbSNP
rs1387443278 1192 dbSNP
rs1305100869 1204 dbSNP
rs1251803851 1210 dbSNP
rs1409791817 1235 dbSNP
rs1289354640 1245 dbSNP
rs967825373 1249 dbSNP
rs1242110051 1260 dbSNP
rs1264495357 1262 dbSNP
rs1212182386 1265 dbSNP
rs900303053 1268 dbSNP
rs1486721432 1278 dbSNP
rs1022544376 1287 dbSNP
rs1271938002 1306 dbSNP
rs1278222770 1319 dbSNP
rs1009425564 1320 dbSNP
rs759442467 1322 dbSNP
rs148678846 1334 dbSNP
rs1185621051 1337 dbSNP
rs1421840645 1337 dbSNP
rs1368106023 1343 dbSNP
rs186902129 1351 dbSNP
rs1003431233 1361 dbSNP
rs28653713 1371 dbSNP
rs1313454195 1373 dbSNP
rs1429622752 1374 dbSNP
rs1299271355 1380 dbSNP
rs1416523952 1381 dbSNP
rs780297964 1395 dbSNP
rs772670498 1397 dbSNP
rs1044382381 1403 dbSNP
rs1012952842 1420 dbSNP
rs771619669 1422 dbSNP
rs1312533904 1423 dbSNP
rs1340691513 1432 dbSNP
rs1247763708 1442 dbSNP
rs766767101 1456 dbSNP
rs183285307 1461 dbSNP
rs1205704573 1468 dbSNP
rs144171633 1488 dbSNP
rs940175257 1494 dbSNP
rs1482271612 1502 dbSNP
rs899208127 1508 dbSNP
rs1037718443 1511 dbSNP
rs938102416 1525 dbSNP
rs908724619 1531 dbSNP
rs140017010 1537 dbSNP
rs982315835 1547 dbSNP
rs934240405 1558 dbSNP
rs1356774156 1560 dbSNP
rs1465042839 1569 dbSNP
rs746280695 1588 dbSNP
rs949613596 1595 dbSNP
rs1454201837 1606 dbSNP
rs1476449658 1609 dbSNP
rs1318163801 1610 dbSNP
rs1228482636 1611 dbSNP
rs1297188741 1614 dbSNP
rs975113384 1616 dbSNP
rs968183020 1624 dbSNP
rs1232506528 1625 dbSNP
rs914141145 1630 dbSNP
rs915023870 1642 dbSNP
rs955682197 1645 dbSNP
rs781703972 1646 dbSNP
rs1486225907 1657 dbSNP
rs1464660786 1667 dbSNP
rs1187180291 1670 dbSNP
rs757795319 1688 dbSNP
rs978467186 1704 dbSNP
rs773615108 1705 dbSNP
rs1328283692 1728 dbSNP
rs1176000323 1733 dbSNP
rs1017824371 1734 dbSNP
rs1471169890 1739 dbSNP
rs1157482289 1748 dbSNP
rs956543078 1749 dbSNP
rs1035267103 1771 dbSNP
rs752114973 1784 dbSNP
rs1235098373 1793 dbSNP
rs1386106940 1797 dbSNP
rs1283857452 1810 dbSNP
rs770248514 1814 dbSNP
rs1226331371 1827 dbSNP
rs1311408434 1828 dbSNP
rs1328715555 1829 dbSNP
rs1382356188 1838 dbSNP
rs1386491370 1839 dbSNP
rs374022848 1843 dbSNP
rs1022904098 1844 dbSNP
rs954724465 1845 dbSNP
rs1012900355 1846 dbSNP
rs898503211 1856 dbSNP
rs1016996484 1867 dbSNP
rs993831594 1872 dbSNP
rs5964737 1873 dbSNP
rs887250798 1880 dbSNP
rs1400878457 1883 dbSNP
rs192168352 1888 dbSNP
rs1476478923 1905 dbSNP
rs1051301721 1915 dbSNP
rs934230337 1916 dbSNP
rs1303291514 1924 dbSNP
rs900106910 1927 dbSNP
rs1039371426 1929 dbSNP
rs1037687250 1934 dbSNP
rs1287459646 1946 dbSNP
rs1002218436 1957 dbSNP
rs1224499740 1959 dbSNP
rs1286614383 1964 dbSNP
rs1320206411 1965 dbSNP
rs946372465 1972 dbSNP
rs752857319 1987 dbSNP
rs1490978726 1997 dbSNP
rs1180677524 2006 dbSNP
rs765537189 2009 dbSNP
rs914909998 2011 dbSNP
rs1470721829 2019 dbSNP
rs1187452371 2028 dbSNP
rs188024095 2040 dbSNP
rs935083137 2049 dbSNP
rs927793074 2050 dbSNP
rs1422944954 2080 dbSNP
rs1163629744 2088 dbSNP
rs1366945748 2131 dbSNP
rs753582971 2136 dbSNP
rs766194048 2137 dbSNP
rs771910658 2141 dbSNP
rs745336821 2164 dbSNP
rs1282281241 2186 dbSNP
rs1377212046 2187 dbSNP
rs973313114 2204 dbSNP
rs1052666013 2233 dbSNP
rs1361727715 2257 dbSNP
rs183845317 2261 dbSNP
rs773149600 2268 dbSNP
rs376526235 2269 dbSNP
rs1004294902 2278 dbSNP
rs1264864377 2286 dbSNP
rs1228027415 2296 dbSNP
rs925585828 2301 dbSNP
rs1292769610 2302 dbSNP
rs887232154 2309 dbSNP
rs1371201861 2313 dbSNP
rs1029816681 2318 dbSNP
rs998381516 2323 dbSNP
rs900013383 2326 dbSNP
rs964400534 2331 dbSNP
rs1388983033 2332 dbSNP
rs1420139182 2336 dbSNP
rs1411631895 2341 dbSNP
rs910281947 2344 dbSNP
rs1358386088 2345 dbSNP
rs1462904302 2347 dbSNP
rs987663921 2353 dbSNP
rs1374897475 2355 dbSNP
rs1337648531 2356 dbSNP
rs1166726397 2359 dbSNP
rs1039952654 2360 dbSNP
rs771474050 2368 dbSNP
rs946960792 2375 dbSNP
rs1226260104 2380 dbSNP
rs893437436 2389 dbSNP
rs1449105435 2394 dbSNP
rs1253931697 2409 dbSNP
rs1340634453 2417 dbSNP
rs1052564068 2427 dbSNP
rs1195729401 2439 dbSNP
rs756737178 2440 dbSNP
rs935092156 2465 dbSNP
rs963280223 2470 dbSNP
rs1461170544 2474 dbSNP
rs1203835689 2492 dbSNP
rs1244607092 2502 dbSNP
rs927747549 2508 dbSNP
rs1449697108 2512 dbSNP
rs1266347667 2514 dbSNP
rs749204928 2516 dbSNP
rs1016164504 2517 dbSNP
rs1476324059 2520 dbSNP
rs1196339728 2531 dbSNP
rs1170777708 2538 dbSNP
rs1424128199 2551 dbSNP
rs1470139210 2556 dbSNP
rs1341304241 2567 dbSNP
rs1408564083 2577 dbSNP
rs981840515 2578 dbSNP
rs373381382 2582 dbSNP
rs773850096 2587 dbSNP
rs1327121398 2597 dbSNP
rs973313915 2615 dbSNP
rs1046469432 2640 dbSNP
rs768301381 2654 dbSNP
rs1014093508 2675 dbSNP
rs1347963240 2676 dbSNP
rs892595814 2682 dbSNP
rs1305226198 2697 dbSNP
rs748976979 2721 dbSNP
rs777691166 2728 dbSNP
rs1261765605 2736 dbSNP
rs1448231858 2738 dbSNP
rs1329737083 2741 dbSNP
rs1268082018 2747 dbSNP
rs755845519 2750 dbSNP
rs1480762853 2753 dbSNP
rs1201274107 2755 dbSNP
rs1053052182 2757 dbSNP
rs1455794160 2759 dbSNP
rs963660982 2765 dbSNP
rs936878428 2769 dbSNP
rs1323265857 2778 dbSNP
rs1321731827 2786 dbSNP
rs1345428670 2787 dbSNP
rs752545444 2790 dbSNP
rs1349053628 2793 dbSNP
rs1237799078 2796 dbSNP
rs781633353 2799 dbSNP
rs868449847 2822 dbSNP
rs1399194859 2823 dbSNP
rs925510462 2839 dbSNP
rs1352473906 2860 dbSNP
rs1429265716 2861 dbSNP
rs983213555 2868 dbSNP
rs951429610 2870 dbSNP
rs1290455559 2888 dbSNP
rs1395736000 2890 dbSNP
rs142832053 2893 dbSNP
rs943012104 2903 dbSNP
rs1418289114 2910 dbSNP
rs1477139434 2917 dbSNP
rs1376860170 2931 dbSNP
rs747503290 2932 dbSNP
rs1471317747 2942 dbSNP
rs778410388 2951 dbSNP
rs1439328027 2953 dbSNP
rs758377757 2955 dbSNP
rs933086087 2957 dbSNP
rs919071168 2960 dbSNP
rs755270204 2971 dbSNP
rs752870389 2979 dbSNP
rs971861288 3005 dbSNP
rs1204308135 3012 dbSNP
rs778882116 3018 dbSNP
rs1391169648 3019 dbSNP
rs1018461223 3030 dbSNP
rs1337132954 3033 dbSNP
rs1011149055 3039 dbSNP
rs139314855 3045 dbSNP
rs1016133412 3056 dbSNP
rs1052095304 3058 dbSNP
rs537461974 3060 dbSNP
rs1313671882 3061 dbSNP
rs1359565844 3072 dbSNP
rs1217151817 3083 dbSNP
rs980690174 3084 dbSNP
rs1272406736 3086 dbSNP
rs1343769133 3087 dbSNP
rs1431116081 3091 dbSNP
rs1274648905 3092 dbSNP
rs999569530 3109 dbSNP
rs1025398450 3111 dbSNP
rs191137247 3122 dbSNP
rs1182013850 3127 dbSNP
rs1384612275 3129 dbSNP
rs1445329181 3131 dbSNP
rs1165617543 3135 dbSNP
rs751571013 3141 dbSNP
rs1461960162 3152 dbSNP
rs1016812114 3180 dbSNP
rs5918861 3181 dbSNP
rs1001014337 3182 dbSNP
rs1409730030 3189 dbSNP
rs1382812734 3194 dbSNP
rs1376173332 3196 dbSNP
rs947818095 3201 dbSNP
rs916409803 3203 dbSNP
rs754065479 3210 dbSNP
rs1306815512 3218 dbSNP
rs941942005 3227 dbSNP
rs1252814273 3240 dbSNP
rs1342619221 3243 dbSNP
rs1201944477 3261 dbSNP
rs1401837536 3265 dbSNP
rs766107486 3272 dbSNP
rs369868502 3276 dbSNP
rs750326895 3299 dbSNP
rs767534404 3299 dbSNP
rs888765425 3304 dbSNP
rs1051883647 3306 dbSNP
rs12353823 3308 dbSNP
rs1428387974 3319 dbSNP
rs983399261 3320 dbSNP
rs951335231 3321 dbSNP
rs1171766831 3324 dbSNP
rs1181391709 3325 dbSNP
rs1475472635 3330 dbSNP
rs186024552 3348 dbSNP
rs933032508 3358 dbSNP
rs922597794 3359 dbSNP
rs1176231609 3360 dbSNP
rs1406351230 3362 dbSNP
rs1454281282 3365 dbSNP
rs976798807 3385 dbSNP
rs1207346280 3386 dbSNP
rs762974982 3389 dbSNP
rs1297654526 3404 dbSNP
rs1018440837 3408 dbSNP
rs368451249 3411 dbSNP
rs1263578477 3412 dbSNP
rs773867277 3420 dbSNP
rs1205837635 3422 dbSNP
rs1258994399 3430 dbSNP
rs1011514302 3434 dbSNP
rs1284606213 3437 dbSNP
rs1187551207 3447 dbSNP
rs768052532 3449 dbSNP
rs1454482994 3451 dbSNP
rs756051704 3451 dbSNP
rs772932563 3451 dbSNP
rs958245708 3451 dbSNP
rs1206498774 3454 dbSNP
rs1453838788 3456 dbSNP
rs1331724223 3459 dbSNP
rs1343535765 3464 dbSNP
rs762635236 3475 dbSNP
rs969727509 3478 dbSNP
rs1347192295 3480 dbSNP
rs1221085831 3482 dbSNP
rs1286796828 3483 dbSNP
rs1228319851 3489 dbSNP
rs775340162 3498 dbSNP
rs1316609493 3503 dbSNP
rs1024945321 3506 dbSNP
rs1216584297 3506 dbSNP
rs992553172 3507 dbSNP
rs1222429922 3508 dbSNP
rs1031647879 3512 dbSNP
rs1269968460 3525 dbSNP
rs771417738 3526 dbSNP
rs182898712 3527 dbSNP
rs999735908 3536 dbSNP
rs747419062 3542 dbSNP
rs1406787040 3543 dbSNP
rs1419349244 3544 dbSNP
rs1031089379 3567 dbSNP
rs150866940 3570 dbSNP
rs1423887438 3574 dbSNP
rs1303689935 3588 dbSNP
rs1367141294 3588 dbSNP
rs1000983513 3593 dbSNP
rs1445990411 3598 dbSNP
rs1372832915 3605 dbSNP
rs1011951336 3606 dbSNP
rs1311490701 3613 dbSNP
rs1357376887 3631 dbSNP
rs1245811558 3632 dbSNP
rs903987787 3639 dbSNP
rs1018474079 3642 dbSNP
rs1007115326 3645 dbSNP
rs1232716377 3653 dbSNP
rs368230138 3657 dbSNP
rs867700321 3659 dbSNP
rs777222072 3662 dbSNP
rs1458600089 3666 dbSNP
rs1367749423 3669 dbSNP
rs772583802 3675 dbSNP
rs748635175 3676 dbSNP
rs1391278829 3679 dbSNP
rs780747344 3683 dbSNP
rs941828527 3685 dbSNP
rs907718501 3686 dbSNP
rs778986820 3687 dbSNP
rs768010415 3688 dbSNP
rs757500692 3689 dbSNP
rs1488596448 3691 dbSNP
rs1293509038 3695 dbSNP
rs751836197 3696 dbSNP
rs764171341 3703 dbSNP
rs1275148154 3707 dbSNP
rs747978058 3709 dbSNP
rs755066474 3710 dbSNP
rs1294921808 3718 dbSNP
rs775512788 3719 dbSNP
rs1347543593 3726 dbSNP
rs765225471 3729 dbSNP
rs375361488 3730 dbSNP
rs1371539052 3731 dbSNP
rs762257768 3733 dbSNP
rs776492460 3740 dbSNP
rs1373068680 3742 dbSNP
rs770763349 3746 dbSNP
rs780325536 3747 dbSNP
rs747727608 3749 dbSNP
rs1196808208 3752 dbSNP
rs1490095454 3757 dbSNP
rs1275084583 3758 dbSNP
rs778556245 3759 dbSNP
rs1337297909 3763 dbSNP
rs754483882 3767 dbSNP
rs1308454435 3770 dbSNP
rs746384837 3778 dbSNP
rs1325779862 3782 dbSNP
rs1200071097 3784 dbSNP
rs909024782 3787 dbSNP
rs1460646625 3791 dbSNP
rs190662204 3802 dbSNP
rs778512341 3808 dbSNP
rs942742684 3808 dbSNP
rs1331279005 3812 dbSNP
rs1244496712 3813 dbSNP
rs1463217284 3820 dbSNP
rs911268873 3834 dbSNP
rs1266638918 3835 dbSNP
rs1419896082 3838 dbSNP
rs750179371 3843 dbSNP
rs1335900469 3852 dbSNP
rs1174086091 3860 dbSNP
rs1404145233 3866 dbSNP
rs1469530377 3867 dbSNP
rs989599962 3869 dbSNP
rs767244422 3870 dbSNP
rs1227082032 3883 dbSNP
rs1031177720 3905 dbSNP
rs978308618 3916 dbSNP
rs1437558297 3917 dbSNP
rs1261702050 3920 dbSNP
rs1322372839 3923 dbSNP
rs757149563 3931 dbSNP
rs970995448 3959 dbSNP
rs1444783983 3961 dbSNP
rs751462468 3987 dbSNP
rs1396374574 3995 dbSNP
rs5964736 3996 dbSNP
rs1428369364 4003 dbSNP
rs1469450229 4016 dbSNP
rs1404650970 4023 dbSNP
rs1419653418 4036 dbSNP
rs1404378954 4038 dbSNP
rs1399006251 4041 dbSNP
rs1169082033 4047 dbSNP
rs186202209 4050 dbSNP
rs1247098095 4064 dbSNP
rs1016402664 4066 dbSNP
rs1005969590 4068 dbSNP
rs1281719107 4069 dbSNP
rs1469229117 4079 dbSNP
rs1223674662 4084 dbSNP
rs1276237542 4113 dbSNP
rs923945621 4117 dbSNP
rs886235640 4119 dbSNP
rs1284405359 4157 dbSNP
rs1489204065 4158 dbSNP
rs1220207077 4162 dbSNP
rs1267837416 4165 dbSNP
rs1480650387 4167 dbSNP
rs775251799 4173 dbSNP
rs1047590674 4174 dbSNP
rs1220042081 4175 dbSNP
rs1321570608 4179 dbSNP
rs933221609 4181 dbSNP
rs901783386 4186 dbSNP
rs879051904 4191 dbSNP
rs1041052779 4198 dbSNP
rs942654399 4203 dbSNP
rs1158042747 4204 dbSNP
rs1408832789 4205 dbSNP
rs1422013480 4207 dbSNP
rs1301840799 4211 dbSNP
rs955608589 4214 dbSNP
rs1297198470 4222 dbSNP
rs911228517 4227 dbSNP
rs989938215 4228 dbSNP
rs994439150 4234 dbSNP
rs1237907941 4247 dbSNP
rs1369495599 4268 dbSNP
rs936804718 4279 dbSNP
rs552111233 4284 dbSNP
rs1279595335 4292 dbSNP
rs1036003952 4302 dbSNP
rs1243609965 4323 dbSNP
rs1005895628 4330 dbSNP
rs1490511577 4336 dbSNP
rs181576984 4337 dbSNP
rs978256371 4340 dbSNP
rs759284737 4358 dbSNP
rs1248207729 4359 dbSNP
rs1309766565 4367 dbSNP
rs970941672 4373 dbSNP
rs1436240351 4382 dbSNP
rs1181398018 4386 dbSNP
rs1380923102 4387 dbSNP
rs1427303837 4389 dbSNP
rs1388989243 4401 dbSNP
rs1385125700 4402 dbSNP
rs1173900408 4418 dbSNP
rs1455273281 4419 dbSNP
rs887513290 4422 dbSNP
rs1390395167 4424 dbSNP
rs1427701444 4425 dbSNP
rs1189784913 4431 dbSNP
rs189169033 4436 dbSNP
rs771598860 4438 dbSNP
rs1246925714 4439 dbSNP
rs1249360539 4439 dbSNP
rs200717985 4439 dbSNP
rs762740928 4439 dbSNP
rs773903193 4446 dbSNP
rs1338508960 4452 dbSNP
rs959257209 4468 dbSNP
rs1239006942 4481 dbSNP
rs1459291384 4483 dbSNP
rs1207880969 4490 dbSNP
rs917792218 4492 dbSNP
rs770407615 4494 dbSNP
rs1190231077 4496 dbSNP
rs1015936196 4512 dbSNP
rs1006372558 4514 dbSNP
rs1171919506 4517 dbSNP
rs748632165 4526 dbSNP
rs1360426047 4532 dbSNP
rs1401979868 4534 dbSNP
rs886228343 4547 dbSNP
rs1335429466 4549 dbSNP
rs935236797 4551 dbSNP
rs774781176 4569 dbSNP
rs1293365416 4596 dbSNP
rs1325842969 4601 dbSNP
rs923909848 4610 dbSNP
rs1026133300 4614 dbSNP
rs979414850 4626 dbSNP
rs768721707 4631 dbSNP
rs997378221 4632 dbSNP
rs911307163 4639 dbSNP
rs901696537 4642 dbSNP
rs749413716 4646 dbSNP
rs1183734083 4653 dbSNP
rs1260261122 4658 dbSNP
rs1428479497 4662 dbSNP
rs1194813448 4664 dbSNP
rs1299446034 4665 dbSNP
rs943308923 4666 dbSNP
rs1479228191 4675 dbSNP
rs748761510 4679 dbSNP
rs1359178281 4682 dbSNP
rs1467119729 4683 dbSNP
rs3810701 4687 dbSNP
rs1384135307 4703 dbSNP
rs1400562356 4706 dbSNP
rs777672656 4707 dbSNP
rs1279816129 4724 dbSNP
rs756284718 4738 dbSNP
rs924080256 4739 dbSNP
rs769789107 4752 dbSNP
rs1313070392 4758 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucgGUCGGUUGAGUGUCACGUCu 5'
             |||  ||   : ||||::| 
Target 5' -ugCAG--AAAGGGGAGUGUGGc 3'
1 - 20
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000330258.3 | 3UTR | UGCAGAAAGGGGAGUGUGGCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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