pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ALDH6A1   
Synonyms MMSADHA, MMSDH
Description aldehyde dehydrogenase 6 family member A1
Transcript NM_005589   
Expression
Putative miRNA Targets on ALDH6A1
3'UTR of ALDH6A1
(miRNA target sites are highlighted)
>ALDH6A1|NM_005589|3'UTR
   1 AAACAAGTTTGTTTAAGACTGACTCCATCCTGAGTAATCTCCCTTTATTTTTGACCAGCTTCATTTGTCAGCTTTGCTCA
  81 GATCAGATCGATGGGATTGGAATACATTGTAACTAAAATCTTCCTCAGGACTATTAACCCCCGCAAAGTTTCTATAGGGA
 161 ACTGCCTAGTGTAACAATGAAACCAGATTTCTCACTTGCTCTTCATACTTCTATTTTGAGGTAACTGTTGTAACTATGAA
 241 ATGCTTATCTGAAAGTAGTGCTTAAACCTGATTTCTAAAAATTATCCCATTTTCTGATGATTTGAAGGGGAGAAAAGCCA
 321 GTGTATGTAAAGAAAATGTTCCAGCCAGGCGCGGTGGCTCACGCCTGTAATTCCATCATTTTGGGAGGCCACAGTGGGCA
 401 GATTGCTTGAGCCCAGGAGTTGAAGAACGTGGCGAAACCCCGTATCTATTATTTAAAAAAATTGAAAAAGTAAAAAAAGA
 481 AAAGGGAAAAAAAATTTTTTAAAGAAGATGTTCCAATAATTGCAAGAAGAACTCTTAGATGGGGAAACAGGACAGAAATA
 561 ACTCACCGCTTTTGGTTGATCCTCAAACATAGCGCTACCTAAATGCCACTGGGAGAGACCTCCTGCAAAGTTTTCTTTAG
 641 CCCCTCTTTTATCCCACAATACACAAGATATAATCCATTTTTATATATCCCAAAGTTGTGGCAACAGCTTCTTTCTTTTC
 721 TGCTCAATGCCACTTTGTTTCCTAGTAATTCATGACCACTATTAATTCTATCATTGTCACTGCTCCTGCTTAAGATCACT
 801 TCTCAAGGATACCTCAGTAAGCAATGGATAAATCAACTTTTTGTTATATGTGCCAAGTACTAAGTTTCAGGGTTCTCTTC
 881 AGCAATCATTAATTAATACTTCAGCCATTAATTCAGATGCAAATAATTTTCTTTTTTCTTTTTTTTGAGATGGAGTTTCA
 961 CTCTTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCAGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCC
1041 TGCCTCAGCCCCCCTAGTAGCTGGGATTACAGGCATGCGCCACCACACCCAGCTAATTTTGTATTTTTAGTAGAGACGGG
1121 GTTTCTCCGTGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGA
1201 TTACAGGCATGAGCCACCACACCCAGCCAGATGCAAATAATTTTCTTAGAAAATTATTTCAAAAGTTATTTTAGGCCCAG
1281 AAATCAAGGATTGTTCCAACCATGAAAATGGGTAAGACACCTGCCTTAAGCAAATCTAACCTGCTATTACTTGCCAAATT
1361 TTATATATTCTTTTCTCTTGCCTGTATTTCTAATTAGTGATTTGTTTAATGAAGAACTCTTCATGTAGAGCAATTAACTG
1441 GGCCTAAGAAATTTCGAAGCTTTCCATGACATAAAGTGGTTAAAAAAAAATGCTTTGACAGTCTTCTTCTGCCATTAGTT
1521 CAACTGCCTTTACGCTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTAGAGTGCAATGG
1601 CGTGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTT
1681 CAGGCATACGCCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCG
1761 AACTCCCGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACCCCCAGCCG
1841 CCTCTATGCTTTTTGTTTCTTTGATATATCTAAACTTAAGGTCAGAACAGAAATTCATGTGCTGAACAGAATGGATTCTT
1921 TTTGCAGTACCAATCCAATTGAATCCTCTTTTTATTTTCCTGCGTCCTTACCAGTCACTTTGATAGTGCTAACTAACCTA
2001 CACTATGGGGGTTATTCATGAATTAAGTATGATAAAAAAAAAAAAGACCTTGAAAATGTTGTGTACCCTGTGGATTTGAG
2081 GCTTATTACTACCACCTGGCTGGATAAAATGTCAAAACCTTCAATCACTTAAGGTGACTGGAACTTTTGTAAAATACACT
2161 TATGATCCTACTGGGCCTTTTTTTTTTTTTTTTCTGCTTTCCTAAATATGAGGCAATAGAAATTTATAATTTGAGACTAC
2241 AGTACCCCTTGTTTTAGCTCTTATCACAGCTGGCAACTGGTAGTGATTTTTTTTGTTGTTGTTTTGTTTTGTTTTGAGAT
2321 GGAGTCTCGCTCTGTTGCCCAGGGTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGT
2401 AATTCTCCTGCCTCAGTCTCCCGAGTAGCTGGGATTACAGGTGCATGCCCCCACACCCGGATAATTTTTTGTACTTTTAG
2481 TAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTAATGATCCGCCCACCTCGGCCTCCCAAAG
2561 TGCTGGGATTACAGGCGTGAACCACCGCACCTGGCCCTGGTAGTGATATTTAATCCAATCCAACAACTATAGGCTGGGTT
2641 AAATAAAAGGTCATTATTGTCTATATTCCAAGTGGAATTAAATGTAGTCACAGAGATTCCTAACATTTTCCTTATATTTA
2721 AGGGAAATCACTTCTAAAAAAACACACTAATCAGAACTGTGATGCTCTAATTAGAAACAACTCATCTGGCCAACTATTTG
2801 CTGCTCAGAGTTTCTTATTTCTTAGATGAAAAAAACTCATCAGTTATATTCATGTGATCGCGGCTAAAAAGTCAGTATTT
2881 TCTTTTTGTTCTAATGTGGCTTCATTTGAAATTTCTCAGATTCTACATTGTACTAATTATGAATAACAAATTATAAATTA
2961 AAAACTCTTAAAGAGAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccuAC-GUUUAAAAu 5'
                 || |||||||| 
Target 5' tattactTGCCAAATTTTa 3'
1345 - 1363 147.00 -7.50
2
miRNA  3' aggaccuACG-UUUAAAAu 5'
                 ||| ||:|||| 
Target 5' gacctccTGCAAAGTTTTc 3'
617 - 635 131.00 -7.20
3
miRNA  3' agGACC----UACGUUUAAAau 5'
            ||||    | | ||||||  
Target 5' aaCTGGGCCTAAG-AAATTTcg 3'
1436 - 1456 125.00 -5.75
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
314167 43 ClinVar
886857 97 ClinVar
314166 142 ClinVar
314165 155 ClinVar
314164 234 ClinVar
314163 309 ClinVar
314162 377 ClinVar
314160 403 ClinVar
314161 403 ClinVar
314159 433 ClinVar
884945 494 ClinVar
884944 558 ClinVar
884943 567 ClinVar
884942 599 ClinVar
884941 642 ClinVar
884940 839 ClinVar
884939 980 ClinVar
888081 991 ClinVar
888080 1006 ClinVar
888079 1011 ClinVar
888078 1015 ClinVar
888077 1016 ClinVar
888076 1032 ClinVar
888075 1050 ClinVar
888074 1148 ClinVar
886801 1157 ClinVar
886800 1181 ClinVar
886799 1208 ClinVar
886798 1367 ClinVar
886797 1386 ClinVar
886796 1427 ClinVar
886795 1514 ClinVar
886794 1534 ClinVar
885794 1601 ClinVar
885793 1602 ClinVar
885792 1623 ClinVar
885791 1655 ClinVar
885790 1759 ClinVar
885789 1820 ClinVar
885788 1887 ClinVar
885787 1904 ClinVar
884866 1934 ClinVar
884865 1938 ClinVar
884864 1963 ClinVar
884863 2157 ClinVar
884862 2261 ClinVar
884861 2298 ClinVar
884860 2328 ClinVar
884859 2361 ClinVar
887997 2422 ClinVar
887996 2491 ClinVar
887995 2517 ClinVar
887994 2680 ClinVar
887993 2774 ClinVar
887992 2816 ClinVar
887991 2861 ClinVar
887990 2994 ClinVar
COSN30478083 26 COSMIC
COSN30147475 56 COSMIC
COSN31557627 84 COSMIC
COSN30107396 98 COSMIC
COSN30525519 120 COSMIC
COSN28617456 155 COSMIC
COSN8387228 464 COSMIC
COSN8156912 494 COSMIC
COSN22471520 694 COSMIC
COSN28597042 1191 COSMIC
COSN30641666 1218 COSMIC
COSN24897523 1247 COSMIC
COSN26681999 1362 COSMIC
COSN21651784 1414 COSMIC
COSN1171019 1482 COSMIC
COSN8849742 1507 COSMIC
COSN19105530 1628 COSMIC
COSN7026276 1634 COSMIC
COSN27485681 2034 COSMIC
COSN27243643 2177 COSMIC
COSN29013320 2177 COSMIC
COSN27254908 2178 COSMIC
COSN8156911 2665 COSMIC
COSN30466032 2984 COSMIC
COSN30632601 2989 COSMIC
COSN30642898 2989 COSMIC
COSN21387532 2999 COSMIC
COSN22819610 3000 COSMIC
COSN24434723 3103 COSMIC
COSN18159017 3216 COSMIC
COSN26438619 3231 COSMIC
COSN5266053 3347 COSMIC
COSM6621852 3383 COSMIC
COSM3754109 3396 COSMIC
COSM6882788 3404 COSMIC
COSM957720 3404 COSMIC
COSM5632872 3408 COSMIC
COSM6210976 3411 COSMIC
COSM6621850 3418 COSMIC
COSM8080325 3426 COSMIC
COSM8271946 3462 COSMIC
COSM3793850 3471 COSMIC
COSM3754107 3476 COSMIC
COSM3999373 3476 COSMIC
COSM7511368 3480 COSMIC
COSM957718 3482 COSMIC
COSN18715258 3525 COSMIC
COSM8085907 3670 COSMIC
COSM7977623 3680 COSMIC
COSM9688488 3699 COSMIC
COSM6221203 3716 COSMIC
COSN18258126 3787 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1367612068 3 dbSNP
rs1360248661 4 dbSNP
rs977363161 5 dbSNP
rs552713614 15 dbSNP
rs756258700 19 dbSNP
rs778803358 24 dbSNP
rs1323293448 25 dbSNP
rs745993452 28 dbSNP
rs967816603 34 dbSNP
rs545399557 43 dbSNP
rs1172151820 47 dbSNP
rs751262147 49 dbSNP
rs1420307438 59 dbSNP
rs1168870767 65 dbSNP
rs1384978152 67 dbSNP
rs1021617503 92 dbSNP
rs1477613635 99 dbSNP
rs761987609 107 dbSNP
rs1306666124 110 dbSNP
rs1323094795 114 dbSNP
rs577889699 121 dbSNP
rs1221721754 130 dbSNP
rs1264316892 138 dbSNP
rs8017248 142 dbSNP
rs768684027 148 dbSNP
rs8204 155 dbSNP
rs1449814976 166 dbSNP
rs779053576 167 dbSNP
rs1416261225 169 dbSNP
rs1424594982 171 dbSNP
rs1214102048 183 dbSNP
rs1164223925 184 dbSNP
rs780154266 187 dbSNP
rs1333285646 194 dbSNP
rs907368949 198 dbSNP
rs1255904000 205 dbSNP
rs1217711360 206 dbSNP
rs1445800496 211 dbSNP
rs1047800279 213 dbSNP
rs930228472 214 dbSNP
rs1228528838 227 dbSNP
rs1311461656 231 dbSNP
rs117311919 234 dbSNP
rs745770617 237 dbSNP
rs989372675 240 dbSNP
rs941670406 249 dbSNP
rs910309384 299 dbSNP
rs1451620661 302 dbSNP
rs150950908 309 dbSNP
rs933189081 312 dbSNP
rs920937074 319 dbSNP
rs1301113744 326 dbSNP
rs965412778 340 dbSNP
rs1003947633 341 dbSNP
rs923121840 345 dbSNP
rs535909477 350 dbSNP
rs1027796218 351 dbSNP
rs1301901930 352 dbSNP
rs778901315 353 dbSNP
rs1401332052 354 dbSNP
rs1278255831 361 dbSNP
rs1021524228 363 dbSNP
rs576612358 364 dbSNP
rs1135882 369 dbSNP
rs1135883 370 dbSNP
rs1217334956 371 dbSNP
rs886050729 377 dbSNP
rs1313169671 387 dbSNP
rs1397416604 389 dbSNP
rs1055785914 393 dbSNP
rs1477043071 396 dbSNP
rs1490321421 398 dbSNP
rs1135884 400 dbSNP
rs1135885 403 dbSNP
rs958658275 405 dbSNP
rs1477486964 420 dbSNP
rs1184721714 422 dbSNP
rs570709600 428 dbSNP
rs1194248871 429 dbSNP
rs1135886 433 dbSNP
rs777419828 434 dbSNP
rs1298350890 441 dbSNP
rs1197758905 442 dbSNP
rs906516185 448 dbSNP
rs1274630789 452 dbSNP
rs907395309 455 dbSNP
rs1198240446 470 dbSNP
rs1343740171 471 dbSNP
rs1256064433 479 dbSNP
rs1219056149 484 dbSNP
rs945438334 487 dbSNP
rs1217605380 489 dbSNP
rs77324906 494 dbSNP
rs1053515412 495 dbSNP
rs1223813624 495 dbSNP
rs1478302954 495 dbSNP
rs868632360 495 dbSNP
rs921230406 496 dbSNP
rs977065088 497 dbSNP
rs898762574 505 dbSNP
rs1441228220 506 dbSNP
rs1158891617 507 dbSNP
rs1359431451 508 dbSNP
rs1307559507 509 dbSNP
rs965097942 516 dbSNP
rs908186084 532 dbSNP
rs1038553265 539 dbSNP
rs941701698 540 dbSNP
rs888778038 542 dbSNP
rs952407114 545 dbSNP
rs771635079 557 dbSNP
rs1050633882 558 dbSNP
rs1308842842 564 dbSNP
rs995058414 566 dbSNP
rs75199385 567 dbSNP
rs189790349 568 dbSNP
rs1452176135 573 dbSNP
rs1412970431 574 dbSNP
rs1251004724 576 dbSNP
rs1033966664 582 dbSNP
rs922991501 588 dbSNP
rs1468251754 593 dbSNP
rs1401676344 594 dbSNP
rs113031892 599 dbSNP
rs1324474156 606 dbSNP
rs1403033174 608 dbSNP
rs1436560743 619 dbSNP
rs945830063 624 dbSNP
rs906551633 625 dbSNP
rs914496738 630 dbSNP
rs1334245312 632 dbSNP
rs4646864 642 dbSNP
rs1284917074 649 dbSNP
rs958731641 650 dbSNP
rs1355749539 655 dbSNP
rs562265746 657 dbSNP
rs1053796311 660 dbSNP
rs927305333 668 dbSNP
rs981954730 687 dbSNP
rs184933997 692 dbSNP
rs1199078261 695 dbSNP
rs1185042156 715 dbSNP
rs1441448117 719 dbSNP
rs1237334029 732 dbSNP
rs1280478800 734 dbSNP
rs1189204405 742 dbSNP
rs1026119048 743 dbSNP
rs1472195700 754 dbSNP
rs1162111530 760 dbSNP
rs1426473123 764 dbSNP
rs1466572270 767 dbSNP
rs1170496939 770 dbSNP
rs1350719358 771 dbSNP
rs1398095473 776 dbSNP
rs532016679 792 dbSNP
rs1040986033 793 dbSNP
rs994352437 810 dbSNP
rs943925369 813 dbSNP
rs1223591873 817 dbSNP
rs908214954 825 dbSNP
rs962811756 830 dbSNP
rs765576515 839 dbSNP
rs1007088729 846 dbSNP
rs1281634792 847 dbSNP
rs888810473 850 dbSNP
rs369588440 851 dbSNP
rs1050116368 854 dbSNP
rs762229802 855 dbSNP
rs930964814 864 dbSNP
rs564781610 870 dbSNP
rs761272121 870 dbSNP
rs1185211347 887 dbSNP
rs1264702395 889 dbSNP
rs1478469120 891 dbSNP
rs1193594239 915 dbSNP
rs541411408 919 dbSNP
rs1371782045 924 dbSNP
rs1467932860 926 dbSNP
rs1173478086 931 dbSNP
rs997562530 935 dbSNP
rs1433084236 938 dbSNP
rs901602080 942 dbSNP
rs1341222778 944 dbSNP
rs1313586105 947 dbSNP
rs1294806509 958 dbSNP
rs959592206 961 dbSNP
rs572593702 969 dbSNP
rs1034238622 979 dbSNP
rs148780249 980 dbSNP
rs1157917933 982 dbSNP
rs1401210266 987 dbSNP
rs970918439 989 dbSNP
rs1208264091 990 dbSNP
rs945903840 991 dbSNP
rs1488335717 992 dbSNP
rs542460804 998 dbSNP
rs576569852 999 dbSNP
rs1161216417 1000 dbSNP
rs146605362 1006 dbSNP
rs1054405623 1007 dbSNP
rs181399266 1011 dbSNP
rs144507608 1015 dbSNP
rs139735554 1016 dbSNP
rs533804426 1023 dbSNP
rs146306002 1032 dbSNP
rs1287158970 1033 dbSNP
rs1382762878 1040 dbSNP
rs1215790237 1047 dbSNP
rs1448053192 1048 dbSNP
rs918680042 1050 dbSNP
rs1286844786 1051 dbSNP
rs972788233 1053 dbSNP
rs1334481932 1054 dbSNP
rs1258405692 1055 dbSNP
rs1041242648 1056 dbSNP
rs962883111 1072 dbSNP
rs1210966428 1073 dbSNP
rs1017045128 1077 dbSNP
rs1252858793 1078 dbSNP
rs1007119932 1079 dbSNP
rs1180858717 1080 dbSNP
rs954333582 1081 dbSNP
rs1439294364 1099 dbSNP
rs1338604291 1110 dbSNP
rs1370265693 1118 dbSNP
rs1458413678 1121 dbSNP
rs1030292512 1125 dbSNP
rs1431450548 1128 dbSNP
rs1346840760 1129 dbSNP
rs4646865 1148 dbSNP
rs537666551 1149 dbSNP
rs1390462743 1156 dbSNP
rs4646866 1157 dbSNP
rs919576120 1158 dbSNP
rs551883827 1164 dbSNP
rs1166717198 1167 dbSNP
rs1020068426 1171 dbSNP
rs1009979631 1172 dbSNP
rs1422344296 1176 dbSNP
rs532132317 1180 dbSNP
rs150649694 1181 dbSNP
rs1175703966 1192 dbSNP
rs763961151 1194 dbSNP
rs533760077 1208 dbSNP
rs1455492352 1209 dbSNP
rs1251132468 1213 dbSNP
rs1191826396 1219 dbSNP
rs1488222384 1221 dbSNP
rs1233544623 1225 dbSNP
rs1206838403 1230 dbSNP
rs1305984442 1238 dbSNP
rs1164248403 1240 dbSNP
rs546575914 1243 dbSNP
rs752338979 1250 dbSNP
rs777144757 1266 dbSNP
rs1235549090 1269 dbSNP
rs1350676889 1280 dbSNP
rs1400771669 1282 dbSNP
rs1461248340 1284 dbSNP
rs1296117512 1287 dbSNP
rs1301932052 1290 dbSNP
rs1439491953 1291 dbSNP
rs1220192100 1292 dbSNP
rs191334537 1298 dbSNP
rs1285060433 1300 dbSNP
rs937126240 1300 dbSNP
rs1225591215 1305 dbSNP
rs759028675 1306 dbSNP
rs1396147523 1309 dbSNP
rs774428035 1312 dbSNP
rs566392656 1317 dbSNP
rs112285871 1320 dbSNP
rs1215194997 1329 dbSNP
rs1307296837 1330 dbSNP
rs950117793 1336 dbSNP
rs1202804983 1338 dbSNP
rs918573634 1343 dbSNP
rs1483681832 1346 dbSNP
rs1187368078 1347 dbSNP
rs1363993358 1348 dbSNP
rs970866035 1350 dbSNP
rs1478807891 1358 dbSNP
rs1272940583 1364 dbSNP
rs186963818 1367 dbSNP
rs536188704 1370 dbSNP
rs542424036 1375 dbSNP
rs111554139 1387 dbSNP
rs1463780392 1390 dbSNP
rs562965721 1393 dbSNP
rs1360588483 1428 dbSNP
rs1399033573 1433 dbSNP
rs1466220504 1438 dbSNP
rs909941907 1441 dbSNP
rs548411762 1455 dbSNP
rs954316765 1456 dbSNP
rs868307382 1477 dbSNP
rs1422293796 1478 dbSNP
rs1213217431 1482 dbSNP
rs1019693630 1486 dbSNP
rs1313055585 1491 dbSNP
rs1008100628 1497 dbSNP
rs977402155 1499 dbSNP
rs1278396300 1500 dbSNP
rs1489327375 1502 dbSNP
rs1217384226 1504 dbSNP
rs1242676422 1511 dbSNP
rs115564279 1514 dbSNP
rs1454191764 1523 dbSNP
rs569000954 1528 dbSNP
rs1019945503 1533 dbSNP
rs1047039253 1534 dbSNP
rs1250903195 1535 dbSNP
rs1205325691 1542 dbSNP
rs1309397100 1549 dbSNP
rs1454500693 1556 dbSNP
rs1009885318 1557 dbSNP
rs112066320 1558 dbSNP
rs1318369086 1558 dbSNP
rs1345165436 1558 dbSNP
rs1392823386 1558 dbSNP
rs1429218318 1558 dbSNP
rs1470526931 1558 dbSNP
rs1491254849 1558 dbSNP
rs35760969 1558 dbSNP
rs71115946 1558 dbSNP
rs878979330 1558 dbSNP
rs879096305 1558 dbSNP
rs995401724 1558 dbSNP
rs1191061610 1559 dbSNP
rs1468768158 1559 dbSNP
rs1491159789 1559 dbSNP
rs1192730325 1560 dbSNP
rs1392920303 1570 dbSNP
rs1233527620 1572 dbSNP
rs1441131660 1574 dbSNP
rs1035394155 1577 dbSNP
rs1158700223 1582 dbSNP
rs1406596307 1584 dbSNP
rs553834672 1585 dbSNP
rs1305387552 1589 dbSNP
rs1398380852 1593 dbSNP
rs1032725884 1594 dbSNP
rs1444260721 1599 dbSNP
rs1001370504 1601 dbSNP
rs550384718 1602 dbSNP
rs1324279658 1604 dbSNP
rs1379471471 1604 dbSNP
rs1463191088 1609 dbSNP
rs1357000562 1610 dbSNP
rs1172445175 1613 dbSNP
rs1434662723 1616 dbSNP
rs1396165824 1617 dbSNP
rs1279117586 1619 dbSNP
rs112962625 1623 dbSNP
rs1438155488 1629 dbSNP
rs1230053324 1631 dbSNP
rs928410913 1632 dbSNP
rs749056880 1633 dbSNP
rs531650242 1634 dbSNP
rs1178062237 1635 dbSNP
rs570625247 1636 dbSNP
rs539787711 1639 dbSNP
rs1250891452 1650 dbSNP
rs1458862089 1653 dbSNP
rs12147048 1655 dbSNP
rs1231909426 1658 dbSNP
rs1468187170 1665 dbSNP
rs1183066923 1667 dbSNP
rs537629910 1671 dbSNP
rs941332159 1689 dbSNP
rs568759977 1690 dbSNP
rs914053721 1698 dbSNP
rs988370310 1701 dbSNP
rs1348544330 1729 dbSNP
rs1410825404 1730 dbSNP
rs1328459678 1736 dbSNP
rs985507707 1740 dbSNP
rs932870599 1744 dbSNP
rs922749897 1759 dbSNP
rs977057363 1760 dbSNP
rs1307440776 1767 dbSNP
rs967386288 1768 dbSNP
rs1021186801 1770 dbSNP
rs558224088 1782 dbSNP
rs988482128 1784 dbSNP
rs1376453296 1791 dbSNP
rs1196121321 1793 dbSNP
rs372456270 1800 dbSNP
rs1128353 1802 dbSNP
rs958249822 1817 dbSNP
rs925311479 1819 dbSNP
rs111624130 1820 dbSNP
rs1032799639 1822 dbSNP
rs368060696 1823 dbSNP
rs964072304 1834 dbSNP
rs1474556366 1835 dbSNP
rs1186440577 1839 dbSNP
rs1426348689 1840 dbSNP
rs1001683807 1846 dbSNP
rs1167668116 1847 dbSNP
rs1008300383 1848 dbSNP
rs540664589 1853 dbSNP
rs1176141659 1862 dbSNP
rs969945517 1875 dbSNP
rs566580516 1887 dbSNP
rs1291401134 1891 dbSNP
rs868785912 1898 dbSNP
rs147392789 1904 dbSNP
rs897086056 1907 dbSNP
rs1337117147 1908 dbSNP
rs995428056 1912 dbSNP
rs1280527958 1922 dbSNP
rs1485072515 1925 dbSNP
rs1421132626 1928 dbSNP
rs1266024897 1933 dbSNP
rs10200 1934 dbSNP
rs72725924 1938 dbSNP
rs888441571 1939 dbSNP
rs1479170951 1946 dbSNP
rs1174506642 1948 dbSNP
rs1394649802 1959 dbSNP
rs185004947 1963 dbSNP
rs551007496 1964 dbSNP
rs1049831154 1970 dbSNP
rs1486008635 1984 dbSNP
rs1382709467 1986 dbSNP
rs1317475798 1988 dbSNP
rs1324481109 1995 dbSNP
rs1045479436 1998 dbSNP
rs932711846 2002 dbSNP
rs531931301 2004 dbSNP
rs945775866 2005 dbSNP
rs1261956450 2010 dbSNP
rs1352114411 2011 dbSNP
rs1205062824 2022 dbSNP
rs1485487935 2027 dbSNP
rs1261113154 2028 dbSNP
rs1240865527 2031 dbSNP
rs1319554621 2033 dbSNP
rs1194624372 2034 dbSNP
rs914080024 2034 dbSNP
rs1292227079 2035 dbSNP
rs1491241983 2045 dbSNP
rs1250434130 2046 dbSNP
rs1491572714 2046 dbSNP
rs200205554 2046 dbSNP
rs1382646422 2048 dbSNP
rs1442881194 2053 dbSNP
rs1326306648 2062 dbSNP
rs1369863564 2064 dbSNP
rs1438254867 2066 dbSNP
rs1052514746 2086 dbSNP
rs530906808 2154 dbSNP
rs116025535 2157 dbSNP
rs925560578 2166 dbSNP
rs1356887949 2168 dbSNP
rs1295777896 2173 dbSNP
rs1381069851 2174 dbSNP
rs1384812430 2175 dbSNP
rs1289851004 2176 dbSNP
rs1455609278 2177 dbSNP
rs1392575256 2178 dbSNP
rs1214774296 2194 dbSNP
rs138897281 2194 dbSNP
rs1491035909 2194 dbSNP
rs371650252 2194 dbSNP
rs373450296 2194 dbSNP
rs878925224 2194 dbSNP
rs1164558519 2195 dbSNP
rs1165464324 2196 dbSNP
rs1462936420 2196 dbSNP
rs1475658015 2198 dbSNP
rs1420169037 2201 dbSNP
rs1191047987 2203 dbSNP
rs1299546089 2206 dbSNP
rs1373555552 2210 dbSNP
rs11844471 2219 dbSNP
rs975679510 2240 dbSNP
rs1262256212 2242 dbSNP
rs1206684419 2251 dbSNP
rs1234449540 2263 dbSNP
rs945528706 2264 dbSNP
rs914157300 2274 dbSNP
rs546381451 2292 dbSNP
rs1252148659 2295 dbSNP
rs76665287 2298 dbSNP
rs1475537280 2302 dbSNP
rs34151541 2302 dbSNP
rs1275783412 2316 dbSNP
rs1226009549 2317 dbSNP
rs531486028 2324 dbSNP
rs979898331 2326 dbSNP
rs750992221 2328 dbSNP
rs986898164 2329 dbSNP
rs1354815668 2330 dbSNP
rs1392828388 2346 dbSNP
rs1325616766 2348 dbSNP
rs1024029152 2349 dbSNP
rs765707423 2351 dbSNP
rs142903000 2352 dbSNP
rs574805869 2353 dbSNP
rs1414815895 2357 dbSNP
rs1293248412 2358 dbSNP
rs1461492813 2358 dbSNP
rs1216738695 2360 dbSNP
rs973940941 2360 dbSNP
rs112689182 2361 dbSNP
rs888472750 2362 dbSNP
rs1050210242 2363 dbSNP
rs544142102 2367 dbSNP
rs1486050422 2383 dbSNP
rs71460950 2387 dbSNP
rs1252196887 2389 dbSNP
rs901259047 2397 dbSNP
rs906881230 2401 dbSNP
rs575184024 2407 dbSNP
rs1188121319 2414 dbSNP
rs1009944254 2415 dbSNP
rs1194750608 2416 dbSNP
rs1339556767 2420 dbSNP
rs945573017 2422 dbSNP
rs914063145 2423 dbSNP
rs748199484 2425 dbSNP
rs1434843614 2427 dbSNP
rs375377542 2433 dbSNP
rs1054068178 2439 dbSNP
rs1374233932 2445 dbSNP
rs1433497739 2452 dbSNP
rs1289894841 2453 dbSNP
rs1361713062 2454 dbSNP
rs936888196 2458 dbSNP
rs866763931 2459 dbSNP
rs1305931762 2462 dbSNP
rs963027933 2468 dbSNP
rs1233721191 2471 dbSNP
rs181822532 2491 dbSNP
rs1369406640 2505 dbSNP
rs1318743281 2507 dbSNP
rs904003412 2514 dbSNP
rs145794069 2517 dbSNP
rs1442052337 2519 dbSNP
rs942939315 2522 dbSNP
rs1454439059 2525 dbSNP
rs1172546412 2528 dbSNP
rs1373501436 2534 dbSNP
rs969711992 2539 dbSNP
rs917026200 2540 dbSNP
rs1391011341 2543 dbSNP
rs1397389584 2544 dbSNP
rs757573097 2548 dbSNP
rs1432799900 2549 dbSNP
rs754182238 2552 dbSNP
rs1015364220 2562 dbSNP
rs1433397148 2563 dbSNP
rs1328314165 2569 dbSNP
rs912560248 2573 dbSNP
rs986757557 2574 dbSNP
rs1301455188 2575 dbSNP
rs1375652266 2576 dbSNP
rs572833689 2576 dbSNP
rs1455381143 2577 dbSNP
rs1316249690 2582 dbSNP
rs553057554 2586 dbSNP
rs1230940201 2587 dbSNP
rs1180693526 2592 dbSNP
rs929957258 2598 dbSNP
rs918706640 2607 dbSNP
rs1028209426 2644 dbSNP
rs1470894380 2645 dbSNP
rs1177239721 2649 dbSNP
rs368635993 2649 dbSNP
rs537998344 2649 dbSNP
rs10150949 2652 dbSNP
rs1167650202 2662 dbSNP
rs901168709 2663 dbSNP
rs1461210886 2666 dbSNP
rs779009524 2676 dbSNP
rs1321868039 2679 dbSNP
rs10139971 2680 dbSNP
rs1443084924 2689 dbSNP
rs1009640380 2697 dbSNP
rs1349868578 2708 dbSNP
rs980439021 2713 dbSNP
rs971300533 2717 dbSNP
rs528824731 2723 dbSNP
rs892660723 2732 dbSNP
rs767774923 2734 dbSNP
rs1053975454 2742 dbSNP
rs1009893709 2743 dbSNP
rs891449814 2743 dbSNP
rs936794309 2747 dbSNP
rs1350556712 2748 dbSNP
rs1032749093 2762 dbSNP
rs1190730796 2776 dbSNP
rs530348209 2781 dbSNP
rs774446667 2789 dbSNP
rs1045318190 2794 dbSNP
rs1441831172 2802 dbSNP
rs1161804352 2810 dbSNP
rs1536 2816 dbSNP
rs1330983910 2832 dbSNP
rs916909101 2859 dbSNP
rs538493290 2860 dbSNP
rs939793039 2861 dbSNP
rs569593728 2862 dbSNP
rs1355972827 2878 dbSNP
rs1436469172 2883 dbSNP
rs749072533 2885 dbSNP
rs1282195582 2888 dbSNP
rs552461730 2895 dbSNP
rs891420554 2898 dbSNP
rs1271795836 2918 dbSNP
rs1157766328 2926 dbSNP
rs1481807084 2930 dbSNP
rs1439487633 2938 dbSNP
rs77543120 2939 dbSNP
rs776162614 2940 dbSNP
rs1313252703 2941 dbSNP
rs1436429605 2953 dbSNP
rs188421153 2960 dbSNP
rs762407642 2964 dbSNP
rs1419629871 2970 dbSNP
rs1408720900 2973 dbSNP
rs1179037529 2974 dbSNP
rs757292591 2975 dbSNP
rs879046140 2980 dbSNP
rs1251448310 2981 dbSNP
rs929988270 2984 dbSNP
rs1212002352 2987 dbSNP
rs1388509745 2988 dbSNP
rs114251476 2994 dbSNP
rs1278664920 2997 dbSNP
rs375778321 3003 dbSNP
rs1318053432 3004 dbSNP
rs749171349 3005 dbSNP
rs974580451 3006 dbSNP
rs1395376409 3007 dbSNP
rs749737332 3013 dbSNP
rs1328007157 3015 dbSNP
rs1349494984 3016 dbSNP
rs1293575298 3018 dbSNP
rs1416372863 3022 dbSNP
rs547121281 3023 dbSNP
rs770179459 3027 dbSNP
rs184376464 3029 dbSNP
rs781442227 3031 dbSNP
rs770713506 3033 dbSNP
rs1161903183 3035 dbSNP
rs1223509971 3041 dbSNP
rs941425245 3056 dbSNP
rs1343588856 3058 dbSNP
rs747851338 3064 dbSNP
rs1199256357 3071 dbSNP
rs1264411862 3072 dbSNP
rs560908875 3074 dbSNP
rs1192882832 3083 dbSNP
rs544204880 3084 dbSNP
rs1246470509 3088 dbSNP
rs575159453 3102 dbSNP
rs905353010 3103 dbSNP
rs1231661183 3108 dbSNP
rs1354943806 3115 dbSNP
rs1045756692 3118 dbSNP
rs1464567920 3122 dbSNP
rs949644196 3129 dbSNP
rs896708787 3134 dbSNP
rs1056736324 3142 dbSNP
rs116716441 3147 dbSNP
rs1317375102 3148 dbSNP
rs35227177 3152 dbSNP
rs757742938 3155 dbSNP
rs1442657247 3161 dbSNP
rs931175617 3163 dbSNP
rs1162403603 3175 dbSNP
rs988673087 3179 dbSNP
rs1263057763 3182 dbSNP
rs921094821 3183 dbSNP
rs1474675611 3184 dbSNP
rs1208558800 3186 dbSNP
rs1266620337 3186 dbSNP
rs79150332 3188 dbSNP
rs1194531702 3202 dbSNP
rs754268587 3216 dbSNP
rs192803721 3217 dbSNP
rs758194884 3220 dbSNP
rs200274904 3224 dbSNP
rs965343741 3233 dbSNP
rs752541447 3237 dbSNP
rs912440922 3238 dbSNP
rs1486472649 3241 dbSNP
rs1263089772 3243 dbSNP
rs536303913 3249 dbSNP
rs1157685774 3251 dbSNP
rs1213003345 3253 dbSNP
rs1327928344 3255 dbSNP
rs778509715 3256 dbSNP
rs1470471503 3265 dbSNP
rs1158249615 3269 dbSNP
rs754658743 3272 dbSNP
rs1386203116 3275 dbSNP
rs753299753 3277 dbSNP
rs1270822207 3286 dbSNP
rs1326206822 3290 dbSNP
rs573782173 3301 dbSNP
rs1389522635 3302 dbSNP
rs1311726938 3308 dbSNP
rs558683329 3311 dbSNP
rs1363949931 3315 dbSNP
rs1287094136 3318 dbSNP
rs762161389 3327 dbSNP
rs752103405 3328 dbSNP
rs764568131 3330 dbSNP
rs1463159448 3332 dbSNP
rs1217823011 3342 dbSNP
rs3742807 3347 dbSNP
rs373517239 3348 dbSNP
rs1429525749 3349 dbSNP
rs1337448408 3355 dbSNP
rs371436249 3356 dbSNP
rs759851246 3357 dbSNP
rs376309108 3359 dbSNP
rs537061220 3366 dbSNP
rs747114138 3367 dbSNP
rs777741048 3368 dbSNP
rs752973452 3369 dbSNP
rs1051368922 3372 dbSNP
rs747900236 3373 dbSNP
rs1308985882 3374 dbSNP
rs1293214808 3376 dbSNP
rs1181396750 3378 dbSNP
rs1453593641 3382 dbSNP
rs1023821718 3385 dbSNP
rs1434193741 3391 dbSNP
rs3742808 3396 dbSNP
rs1476086398 3411 dbSNP
rs1326649533 3415 dbSNP
rs1456059534 3416 dbSNP
rs754570761 3422 dbSNP
rs753494464 3423 dbSNP
rs1299458004 3433 dbSNP
rs1162942013 3434 dbSNP
rs1396607704 3437 dbSNP
rs779639520 3442 dbSNP
rs1408647394 3443 dbSNP
rs1375071449 3445 dbSNP
rs1306764171 3447 dbSNP
rs1357893777 3448 dbSNP
rs755638669 3449 dbSNP
rs749951354 3452 dbSNP
rs764620562 3454 dbSNP
rs1320226562 3458 dbSNP
rs1194925762 3464 dbSNP
rs1229910564 3465 dbSNP
rs763575412 3468 dbSNP
rs1266079967 3471 dbSNP
rs373121592 3472 dbSNP
rs3742809 3476 dbSNP
rs538855239 3477 dbSNP
rs776896070 3482 dbSNP
rs927435973 3483 dbSNP
rs1348501596 3491 dbSNP
rs771104282 3492 dbSNP
rs1236563385 3493 dbSNP
rs760780073 3497 dbSNP
rs369241982 3501 dbSNP
rs567096598 3503 dbSNP
rs748100993 3504 dbSNP
rs949911269 3506 dbSNP
rs1429555209 3509 dbSNP
rs774067313 3514 dbSNP
rs766341676 3516 dbSNP
rs749097857 3519 dbSNP
rs1376508798 3523 dbSNP
rs779735696 3524 dbSNP
rs374862219 3525 dbSNP
rs373110080 3526 dbSNP
rs1172115810 3528 dbSNP
rs780580375 3529 dbSNP
rs758907336 3531 dbSNP
rs753249067 3537 dbSNP
rs781146217 3538 dbSNP
rs1208596797 3541 dbSNP
rs1039553213 3544 dbSNP
rs1186484494 3550 dbSNP
rs546889974 3551 dbSNP
rs912486296 3553 dbSNP
rs988048857 3561 dbSNP
rs955925081 3579 dbSNP
rs1415946156 3593 dbSNP
rs1302723311 3595 dbSNP
rs530091592 3602 dbSNP
rs1377465693 3618 dbSNP
rs1274316163 3619 dbSNP
rs189817932 3620 dbSNP
rs1337718827 3625 dbSNP
rs755369881 3627 dbSNP
rs1409465938 3630 dbSNP
rs754191171 3632 dbSNP
rs1315184318 3633 dbSNP
rs1296609223 3635 dbSNP
rs1341693441 3637 dbSNP
rs766586101 3638 dbSNP
rs760832032 3639 dbSNP
rs1158638228 3643 dbSNP
rs773289178 3646 dbSNP
rs755151779 3650 dbSNP
rs1180946180 3653 dbSNP
rs767592524 3655 dbSNP
rs1259278976 3658 dbSNP
rs1210742731 3663 dbSNP
rs368910865 3664 dbSNP
rs1441761029 3670 dbSNP
rs751562273 3671 dbSNP
rs1482177338 3676 dbSNP
rs1017380962 3681 dbSNP
rs774259468 3685 dbSNP
rs768631870 3697 dbSNP
rs766673597 3700 dbSNP
rs762992658 3706 dbSNP
rs749080453 3709 dbSNP
rs1356352204 3715 dbSNP
rs1295486244 3719 dbSNP
rs762511088 3725 dbSNP
rs1448496267 3730 dbSNP
rs1446369145 3732 dbSNP
rs1009042912 3736 dbSNP
rs1340364106 3738 dbSNP
rs550542647 3744 dbSNP
rs1402977033 3749 dbSNP
rs745512041 3754 dbSNP
rs781057840 3758 dbSNP
rs1414497274 3762 dbSNP
rs756810611 3763 dbSNP
rs746564763 3765 dbSNP
rs1179868670 3766 dbSNP
rs1472370693 3767 dbSNP
rs755577197 3773 dbSNP
rs754184495 3781 dbSNP
rs766671209 3784 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000553458.1 | 3UTR | GAAAAGGGAAAAAAAAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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