pre-miRNA Information
pre-miRNA hsa-mir-3622b   
Genomic Coordinates chr8: 27701673 - 27701767
Description Homo sapiens miR-3622b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622b-3p
Sequence 58| UCACCUGAGCUCCCGUGCCUG |78
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1232922758 2 dbSNP
rs530939348 5 dbSNP
rs1439657384 10 dbSNP
rs1157333896 12 dbSNP
rs66683138 14 dbSNP
rs1044808718 15 dbSNP
rs946438979 19 dbSNP
rs551845360 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CHMP1B   
Synonyms C10orf2, C18-ORF2, C18orf2, CHMP1.5, Vps46-2, Vps46B, hVps46-2
Description charged multivesicular body protein 1B
Transcript NM_020412   
Expression
Putative miRNA Targets on CHMP1B
3'UTR of CHMP1B
(miRNA target sites are highlighted)
>CHMP1B|NM_020412|3'UTR
   1 CGGCAGAACCCGCTCTGAGGTTTCCTGGCCATAGCCACCCTTTGAAATGCTCTCTGTGTGTTAGAGAGATACTATACCCT
  81 AGAAACTCTGAACACGCCAGAATGCTGAAATGCCCTTCTACCTTTGGGTTTACAGCCCCCTCCACATAAATTAAGAAATT
 161 CAGTATTTCTGCACTCTTAGCTGGATTCTAAAGTTCTGTATAGCTCGTAATGATGGTATTTTTATAGCAGCCTTTTAACA
 241 GAACTAGTTAATTTCGTGTATATGAATCTTTCTCGAAGATCTGGTCAAAACTGTATTCAGTTTCCTGCCCAGAATGATCA
 321 GATTGAAGGTGGTTGGTTTTTATTATTATTTAGTGTGATTGATAGTATCTAGAATGGCAGGTGGTGCATAAAAGTTAAAG
 401 AGAGGGGAAAGATTACTTAGTTTGGTTATACAGTTATAAACACCATGCAGTGTATTCGGTGGACTGTGCTATTTCTGTTT
 481 ATCCTTTGGGTTTTGGTTTTTGTTTTTTTTTTTTTTGCCTTCACAGTGAGACTGCAAATGATTGTTCTCATAACGTATAT
 561 TATTAATAAATGTGGTCCTATAATTTATACTGAAATTACCTTAGGATATTTTTGCATAATACTCTCTTACTGCTTACATT
 641 CTATAAATTTTTCACGTGATAATTGTCTTTGCGTAACTGGGAAAAATGCCGAATAACTTCCTTTATTATCTGGAAAAATT
 721 AAATTTGTTCATTTATATTTTCTACTTACTAAATTGAGTTTTTAAAAAGACTTAGTGTGACATTTGACAGTGTCTTTCAA
 801 ACGAACTTCTCTAACAAGTTTATAGTTATTTTCCTGTTTCAACACTATTAGAAGTCTTATAAATTATGCTAATTAGCATG
 881 GCAGTCATGTTACACACTCTTAACATTGCCAAAGAACTGTTGATTTCGTTTGAGAAAACCCTAGGACTGTGTGTGTGTAG
 961 GTTTTGTTTTGATTTTAACAACCAAAAATAGAAATAAAATTAGAACTGCGTTTTAAGTTCTAATTTGCATTTATTAATTT
1041 GTCCAAAAGCAAGAACTCTTGGAAATCCTTGAAAATATAAGCTGGAATGTTTTACTTAGCCATGCAAGTCATTTATGTAT
1121 ACATCCAGCCAGCTGGAAATCTGAGAAGTAAAGAGGTAGGACTGGAAGGAAGGAGAAAGCTTGAGTCTTTAAGGCTAGAG
1201 CCCAGCTGTGCTGCCTGCCATCTTCTCAGGAATGGCAGTGCGTATTTTCTGGCTGAAAAGTAAAGCATGTATCCACCGCT
1281 TTCTCATAGCCTCGAAACATGGAGAAAAGCAACTTGCTTTTGCCTTGGCAAGCATGCTAACCTAAGTTAATTCAAGTTTT
1361 TTTTAACTTACCCTTTCCTTCACTGGAAGATTTTTCCATAAGAGAATTCCATTGTTTCAGAAAATAATTATAGGGGCCCT
1441 TCCAAGTTCTTTGAAAGATTCATAACCAACTATTCACTATTATAACATGTTTCCCAGTGTAAATGAGTAAGGAAAAAAAA
1521 AGTGTAACAGGTGCGTGCAGATGAGGAGTGACCCTCATATTTAAGTTATTTTATATTTGACTGGACATTGTTCAGAAGTG
1601 TGCTTTAAGGGACACTTGTTAGTTGTCTGCCCAGCATCTCTCAAGAATATCCCTCCTGTCCTCCACATGGTTGTGCAGGG
1681 CCATGTGTGAAGACAGCATGAGTCTTAACCCCTCTTTTATTTTATTTTTGAGACAGAGTCTCGCTCTGTTGCCCAGGCTG
1761 GAGTGCTGTGGCGCGATCTCTGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTGCCGAGT
1841 AGCTGGAATTACAGGTGTGCACCACCATGCCCAGCTAGTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTATGTTGG
1921 CCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC
2001 ACTGCACCTGGCCTTAACCCCTCTTTAGATTGGAAAAAATAATTACAACTTTAAAAATAGCTTAGTGTTGAACCCTTTGG
2081 TAAACTAAAGACCCTTTTATAATGCACATATTCCCAACAAAATTAATATATTTTGTGAGATTAAACAATGCTTGTATATG
2161 CTTGAACTTTCTTAAAATATGTCCATGTCATACTATTATGAATGTACATTTTTATGAGTCATAAATATTATTTTCAAAAG
2241 CACTACAGGCCCATGAATTACTTCCTCACTTTTGCAGTTGATTACTGAAATGTAAATCACAAGAATTTGTCAATTAAATC
2321 ATTTTAAACTGCATGTTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guccGUGCCCUCGAGUCCACu 5'
              | |  || |||||||| 
Target 5' tgaaCTCCTGACCTCAGGTGa 3'
1933 - 1953 153.00 -16.90
2
miRNA  3' gucCGU-GCCCUCGA-GUCCACu 5'
             |:| | ||| :| |||||| 
Target 5' cgaGTAGCTGGAATTACAGGTGt 3'
1836 - 1858 126.00 -14.70
3
miRNA  3' guccGUGCCCUCGAGUCCACu 5'
              | |  |:|:||| ||| 
Target 5' ccacCTCCCGGGTTCAAGTGa 3'
1796 - 1816 121.00 -13.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30115653 5 COSMIC
COSN30177602 29 COSMIC
COSN20079185 57 COSMIC
COSN22849813 61 COSMIC
COSN31572966 97 COSMIC
COSN31590720 129 COSMIC
COSN31515324 189 COSMIC
COSN26564392 199 COSMIC
COSN5421729 201 COSMIC
COSN31531133 400 COSMIC
COSN30111775 497 COSMIC
COSN31517802 513 COSMIC
COSN20114712 516 COSMIC
COSN15623637 526 COSMIC
COSN30510111 540 COSMIC
COSN26650684 666 COSMIC
COSN31548500 668 COSMIC
COSN31512885 702 COSMIC
COSN31513850 704 COSMIC
COSN1731421 720 COSMIC
COSN9675539 724 COSMIC
COSN31530252 726 COSMIC
COSN31567800 740 COSMIC
COSN30163307 843 COSMIC
COSN20093404 863 COSMIC
COSN7458726 978 COSMIC
COSN30139725 1010 COSMIC
COSN31534749 1021 COSMIC
COSN15623638 1095 COSMIC
COSN30121424 1111 COSMIC
COSN25271659 1142 COSMIC
COSN30140987 1148 COSMIC
COSN22795575 1166 COSMIC
COSN30528669 1242 COSMIC
COSN26634189 1243 COSMIC
COSN26577400 1270 COSMIC
COSN31584339 1321 COSMIC
COSN22214272 1354 COSMIC
COSN31484501 1386 COSMIC
COSN31484439 1387 COSMIC
COSN30539814 1397 COSMIC
COSN31520325 1408 COSMIC
COSN30143657 1460 COSMIC
COSN6114454 1504 COSMIC
COSN22812413 1522 COSMIC
COSN31484506 1544 COSMIC
COSN31490615 1643 COSMIC
COSN15623639 1652 COSMIC
COSN30130896 1672 COSMIC
COSN31482238 1701 COSMIC
COSN26568523 1720 COSMIC
COSN30112702 1745 COSMIC
COSN30512736 1805 COSMIC
COSN31661394 1856 COSMIC
COSN30169723 1927 COSMIC
COSN24004229 1958 COSMIC
COSN28183427 2040 COSMIC
COSN30137864 2159 COSMIC
COSN26958074 2164 COSMIC
COSN31520617 2236 COSMIC
COSN31489276 2304 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs910214548 3 dbSNP
rs1040348120 6 dbSNP
rs1216335433 7 dbSNP
rs1269419317 8 dbSNP
rs375387808 10 dbSNP
rs750292644 15 dbSNP
rs756110664 16 dbSNP
rs753331493 26 dbSNP
rs943072874 29 dbSNP
rs1229793765 30 dbSNP
rs376211902 34 dbSNP
rs1157222325 38 dbSNP
rs1384630480 39 dbSNP
rs778381437 40 dbSNP
rs1320930420 44 dbSNP
rs538667874 47 dbSNP
rs1047544311 50 dbSNP
rs888265335 50 dbSNP
rs747854571 51 dbSNP
rs1005729382 53 dbSNP
rs1167311010 55 dbSNP
rs1406208688 55 dbSNP
rs554091045 56 dbSNP
rs1339547232 58 dbSNP
rs1166534654 59 dbSNP
rs572395325 64 dbSNP
rs1249262421 67 dbSNP
rs1448252825 72 dbSNP
rs1786581 73 dbSNP
rs554817121 78 dbSNP
rs187972433 79 dbSNP
rs1238620552 81 dbSNP
rs773575712 81 dbSNP
rs1309267747 88 dbSNP
rs1271950735 91 dbSNP
rs1003250484 98 dbSNP
rs969972365 100 dbSNP
rs1344189755 106 dbSNP
rs1298302327 107 dbSNP
rs1034677999 109 dbSNP
rs1233505327 113 dbSNP
rs1002165187 114 dbSNP
rs1328014430 116 dbSNP
rs1276894727 117 dbSNP
rs759403027 119 dbSNP
rs1327258804 120 dbSNP
rs1442081470 121 dbSNP
rs1032774133 128 dbSNP
rs371543985 129 dbSNP
rs1391296401 133 dbSNP
rs968270896 134 dbSNP
rs1453148832 137 dbSNP
rs986684549 137 dbSNP
rs1245046737 138 dbSNP
rs1437979232 139 dbSNP
rs1450506366 140 dbSNP
rs147739079 141 dbSNP
rs1192440058 147 dbSNP
rs1478143361 148 dbSNP
rs755035013 151 dbSNP
rs1202157225 159 dbSNP
rs796735314 160 dbSNP
rs988657855 165 dbSNP
rs1209993325 166 dbSNP
rs1345661517 166 dbSNP
rs758377044 170 dbSNP
rs769691075 172 dbSNP
rs944783515 174 dbSNP
rs1303488158 175 dbSNP
rs1219953245 176 dbSNP
rs1372831502 182 dbSNP
rs11580 185 dbSNP
rs1411919455 186 dbSNP
rs919222527 187 dbSNP
rs746486539 191 dbSNP
rs1433338633 197 dbSNP
rs1397672863 199 dbSNP
rs1445480239 201 dbSNP
rs1177569248 203 dbSNP
rs987674080 205 dbSNP
rs1361381702 213 dbSNP
rs1309311588 216 dbSNP
rs1046948851 224 dbSNP
rs1406637279 225 dbSNP
rs762988565 232 dbSNP
rs56665849 233 dbSNP
rs1005408355 239 dbSNP
rs192920920 245 dbSNP
rs1044918886 247 dbSNP
rs1257727234 254 dbSNP
rs1210876748 255 dbSNP
rs920284067 261 dbSNP
rs929053304 265 dbSNP
rs751020969 267 dbSNP
rs1316360904 275 dbSNP
rs1273455194 276 dbSNP
rs904977769 279 dbSNP
rs1003253703 287 dbSNP
rs1220171328 288 dbSNP
rs1034702410 290 dbSNP
rs1293046408 291 dbSNP
rs956370683 292 dbSNP
rs1198134744 294 dbSNP
rs560386260 296 dbSNP
rs1303889023 298 dbSNP
rs1009634488 301 dbSNP
rs1344028448 305 dbSNP
rs1156340453 306 dbSNP
rs1458478690 307 dbSNP
rs527993965 308 dbSNP
rs895646050 309 dbSNP
rs949831977 312 dbSNP
rs1258032092 322 dbSNP
rs796107412 332 dbSNP
rs1044251196 336 dbSNP
rs1478274207 344 dbSNP
rs968700609 345 dbSNP
rs1330078844 346 dbSNP
rs61686256 346 dbSNP
rs1272842523 352 dbSNP
rs1231711780 353 dbSNP
rs1000531446 354 dbSNP
rs368198752 361 dbSNP
rs893822386 363 dbSNP
rs1317957425 370 dbSNP
rs1401766781 380 dbSNP
rs1388884753 381 dbSNP
rs1007486779 383 dbSNP
rs1163693407 386 dbSNP
rs910684450 389 dbSNP
rs1369910827 397 dbSNP
rs1165232326 398 dbSNP
rs531978625 399 dbSNP
rs966104550 399 dbSNP
rs1322218314 400 dbSNP
rs1009651297 403 dbSNP
rs1465364961 406 dbSNP
rs143323198 407 dbSNP
rs1437689390 411 dbSNP
rs1489597049 412 dbSNP
rs1266392986 413 dbSNP
rs1227247902 415 dbSNP
rs183254172 417 dbSNP
rs1306241327 420 dbSNP
rs1300505807 423 dbSNP
rs538233539 425 dbSNP
rs1285548836 429 dbSNP
rs954799589 431 dbSNP
rs1365234697 432 dbSNP
rs1316329578 435 dbSNP
rs1324635617 438 dbSNP
rs987576882 444 dbSNP
rs1461330478 453 dbSNP
rs1258811240 457 dbSNP
rs1170370346 459 dbSNP
rs553823573 460 dbSNP
rs1341482426 465 dbSNP
rs1450012483 466 dbSNP
rs1017743186 467 dbSNP
rs1196925930 471 dbSNP
rs1208133232 472 dbSNP
rs964918523 476 dbSNP
rs974087229 478 dbSNP
rs750357952 480 dbSNP
rs1049514462 487 dbSNP
rs774928325 488 dbSNP
rs762465286 491 dbSNP
rs1277245522 496 dbSNP
rs565943555 496 dbSNP
rs1260701591 498 dbSNP
rs1347802450 500 dbSNP
rs1230518961 501 dbSNP
rs1302046037 501 dbSNP
rs1477297124 502 dbSNP
rs1301602710 503 dbSNP
rs1368399606 503 dbSNP
rs141499690 503 dbSNP
rs1430318423 503 dbSNP
rs145799015 503 dbSNP
rs199858817 503 dbSNP
rs59761845 503 dbSNP
rs756038955 503 dbSNP
rs767611648 503 dbSNP
rs778869754 503 dbSNP
rs879017184 503 dbSNP
rs201893984 505 dbSNP
rs1170861325 506 dbSNP
rs941267886 507 dbSNP
rs1044929812 508 dbSNP
rs905002176 509 dbSNP
rs74815075 514 dbSNP
rs77078320 515 dbSNP
rs1390692887 516 dbSNP
rs1387817493 518 dbSNP
rs1305364633 519 dbSNP
rs1338830530 520 dbSNP
rs1399636356 525 dbSNP
rs939095927 536 dbSNP
rs1279158247 542 dbSNP
rs1211826422 546 dbSNP
rs929000579 550 dbSNP
rs983147647 555 dbSNP
rs1242768529 558 dbSNP
rs1256079750 569 dbSNP
rs892189295 572 dbSNP
rs1348304529 573 dbSNP
rs1356988045 575 dbSNP
rs867794493 576 dbSNP
rs1354721535 578 dbSNP
rs1022369070 579 dbSNP
rs916964680 581 dbSNP
rs536555807 596 dbSNP
rs1397743168 606 dbSNP
rs372421623 615 dbSNP
rs1194096796 620 dbSNP
rs1455827715 621 dbSNP
rs1007728488 622 dbSNP
rs1263467238 623 dbSNP
rs1190142890 625 dbSNP
rs1236108113 625 dbSNP
rs188714622 627 dbSNP
rs1044221874 631 dbSNP
rs1443511967 632 dbSNP
rs114918245 634 dbSNP
rs556362341 640 dbSNP
rs1054818893 642 dbSNP
rs578065718 644 dbSNP
rs1269687021 646 dbSNP
rs893799835 650 dbSNP
rs1009948217 660 dbSNP
rs950860653 661 dbSNP
rs1341048954 665 dbSNP
rs1317718871 668 dbSNP
rs984844149 671 dbSNP
rs376716959 674 dbSNP
rs368920612 678 dbSNP
rs980655073 690 dbSNP
rs544967754 691 dbSNP
rs939190806 692 dbSNP
rs113786915 693 dbSNP
rs1056305935 696 dbSNP
rs1187367728 701 dbSNP
rs568567690 701 dbSNP
rs1387471661 711 dbSNP
rs1450696649 712 dbSNP
rs756419024 726 dbSNP
rs945084465 732 dbSNP
rs1229885602 745 dbSNP
rs1043400628 750 dbSNP
rs903494629 761 dbSNP
rs756872862 764 dbSNP
rs1226117496 772 dbSNP
rs1007779292 780 dbSNP
rs1017841468 782 dbSNP
rs1312105612 788 dbSNP
rs1017710305 799 dbSNP
rs1348424552 810 dbSNP
rs560125252 816 dbSNP
rs536357745 820 dbSNP
rs1325909442 821 dbSNP
rs527932871 822 dbSNP
rs1341068338 829 dbSNP
rs965286732 830 dbSNP
rs902085598 835 dbSNP
rs997681211 843 dbSNP
rs1391412922 846 dbSNP
rs1451880389 846 dbSNP
rs1026892745 848 dbSNP
rs1477488009 858 dbSNP
rs1223467568 863 dbSNP
rs1352867028 863 dbSNP
rs371563566 864 dbSNP
rs746266935 872 dbSNP
rs985242164 873 dbSNP
rs1262233000 879 dbSNP
rs780513070 882 dbSNP
rs561285088 889 dbSNP
rs1199471198 890 dbSNP
rs1166035798 898 dbSNP
rs1344306336 900 dbSNP
rs970073562 900 dbSNP
rs1218764772 902 dbSNP
rs1256251923 904 dbSNP
rs754264802 906 dbSNP
rs755468403 915 dbSNP
rs1379058218 918 dbSNP
rs1439594348 929 dbSNP
rs1160311133 933 dbSNP
rs1306571439 936 dbSNP
rs1432150996 938 dbSNP
rs1647542 944 dbSNP
rs372875350 947 dbSNP
rs143407589 948 dbSNP
rs1422471640 952 dbSNP
rs979871035 956 dbSNP
rs913684484 957 dbSNP
rs1302551656 958 dbSNP
rs530729660 960 dbSNP
rs1250784006 962 dbSNP
rs1179833127 966 dbSNP
rs1483978371 967 dbSNP
rs571224907 990 dbSNP
rs1275328080 992 dbSNP
rs927107880 996 dbSNP
rs748175472 998 dbSNP
rs1407093359 1001 dbSNP
rs1280835936 1007 dbSNP
rs935866046 1012 dbSNP
rs1219980624 1022 dbSNP
rs1054303743 1032 dbSNP
rs532246054 1034 dbSNP
rs1412107768 1039 dbSNP
rs1454691968 1043 dbSNP
rs547374363 1044 dbSNP
rs1329360315 1045 dbSNP
rs1302726004 1051 dbSNP
rs34483635 1058 dbSNP
rs1446500046 1059 dbSNP
rs913100472 1068 dbSNP
rs1356867265 1072 dbSNP
rs796156051 1082 dbSNP
rs1414678552 1086 dbSNP
rs565679370 1096 dbSNP
rs758620666 1097 dbSNP
rs1308897254 1104 dbSNP
rs117509514 1106 dbSNP
rs943063105 1111 dbSNP
rs548490314 1112 dbSNP
rs1232256266 1123 dbSNP
rs902139722 1127 dbSNP
rs866230354 1128 dbSNP
rs1047895276 1133 dbSNP
rs1462363848 1139 dbSNP
rs79296340 1146 dbSNP
rs1330192579 1148 dbSNP
rs1312462928 1151 dbSNP
rs1006375138 1153 dbSNP
rs1382049355 1154 dbSNP
rs1016782942 1156 dbSNP
rs536818248 1159 dbSNP
rs970125837 1166 dbSNP
rs572128027 1172 dbSNP
rs1458496284 1174 dbSNP
rs1178211603 1176 dbSNP
rs1035657552 1177 dbSNP
rs1008934534 1180 dbSNP
rs1421979600 1181 dbSNP
rs1415921033 1188 dbSNP
rs778309475 1188 dbSNP
rs148010070 1191 dbSNP
rs1182495690 1198 dbSNP
rs1039130728 1211 dbSNP
rs1464458336 1212 dbSNP
rs1431856450 1216 dbSNP
rs1175768349 1218 dbSNP
rs960614821 1220 dbSNP
rs1265222943 1221 dbSNP
rs578003910 1221 dbSNP
rs1219876041 1225 dbSNP
rs1324004173 1233 dbSNP
rs995378250 1243 dbSNP
rs780048204 1266 dbSNP
rs1363738680 1271 dbSNP
rs573042549 1273 dbSNP
rs1436807825 1281 dbSNP
rs1168651432 1288 dbSNP
rs1385312347 1292 dbSNP
rs369262233 1294 dbSNP
rs1351429158 1299 dbSNP
rs572098257 1300 dbSNP
rs542645541 1301 dbSNP
rs1448797580 1302 dbSNP
rs7238473 1310 dbSNP
rs971089091 1311 dbSNP
rs72868678 1313 dbSNP
rs926994184 1316 dbSNP
rs943117282 1318 dbSNP
rs775316639 1320 dbSNP
rs1266405930 1323 dbSNP
rs957146621 1324 dbSNP
rs933594784 1325 dbSNP
rs1271848910 1330 dbSNP
rs558927519 1332 dbSNP
rs1326635238 1335 dbSNP
rs1341721926 1342 dbSNP
rs1384750056 1345 dbSNP
rs1048477526 1348 dbSNP
rs886673304 1354 dbSNP
rs1006837830 1356 dbSNP
rs1170539901 1357 dbSNP
rs1256869220 1357 dbSNP
rs1462517055 1359 dbSNP
rs1318078332 1368 dbSNP
rs1196940943 1371 dbSNP
rs543617859 1373 dbSNP
rs565482083 1376 dbSNP
rs1435139095 1390 dbSNP
rs1037866019 1392 dbSNP
rs867342465 1397 dbSNP
rs990365109 1399 dbSNP
rs1482345118 1401 dbSNP
rs1205987651 1402 dbSNP
rs532804625 1406 dbSNP
rs1206534467 1407 dbSNP
rs1339429943 1412 dbSNP
rs749058189 1417 dbSNP
rs1191012333 1419 dbSNP
rs945935431 1425 dbSNP
rs184613318 1434 dbSNP
rs189447890 1440 dbSNP
rs1481549506 1443 dbSNP
rs529694769 1449 dbSNP
rs577226316 1456 dbSNP
rs1309729637 1463 dbSNP
rs61262839 1470 dbSNP
rs1172596616 1473 dbSNP
rs544589747 1478 dbSNP
rs562878420 1480 dbSNP
rs1430289127 1482 dbSNP
rs1158867749 1484 dbSNP
rs1039014643 1494 dbSNP
rs1471789276 1497 dbSNP
rs1457311561 1505 dbSNP
rs1414697416 1508 dbSNP
rs1183083685 1511 dbSNP
rs1198297733 1513 dbSNP
rs1442365104 1513 dbSNP
rs1484016491 1513 dbSNP
rs979711503 1513 dbSNP
rs900563913 1514 dbSNP
rs537361407 1522 dbSNP
rs1397902508 1523 dbSNP
rs1289994065 1525 dbSNP
rs1049679400 1527 dbSNP
rs542594887 1527 dbSNP
rs376836089 1529 dbSNP
rs1332235622 1532 dbSNP
rs1362188955 1536 dbSNP
rs761307588 1539 dbSNP
rs1397914151 1542 dbSNP
rs1215867325 1555 dbSNP
rs1320096956 1558 dbSNP
rs1455850379 1561 dbSNP
rs886632235 1570 dbSNP
rs1159568241 1578 dbSNP
rs1472755820 1583 dbSNP
rs1287070590 1585 dbSNP
rs1190250487 1588 dbSNP
rs1445878508 1591 dbSNP
rs1243223984 1605 dbSNP
rs1207644957 1609 dbSNP
rs1463311573 1615 dbSNP
rs1005133475 1616 dbSNP
rs7238570 1622 dbSNP
rs1282312668 1629 dbSNP
rs1292976777 1631 dbSNP
rs1383536032 1635 dbSNP
rs1490959361 1642 dbSNP
rs1296986712 1645 dbSNP
rs1391196844 1648 dbSNP
rs1433153251 1648 dbSNP
rs1405085575 1653 dbSNP
rs371572236 1653 dbSNP
rs576100887 1653 dbSNP
rs1389063310 1654 dbSNP
rs184662285 1665 dbSNP
rs534546967 1667 dbSNP
rs79466550 1670 dbSNP
rs1161159387 1684 dbSNP
rs550543389 1690 dbSNP
rs76865420 1696 dbSNP
rs957336416 1701 dbSNP
rs942262841 1713 dbSNP
rs1037875718 1714 dbSNP
rs1411664673 1715 dbSNP
rs1423174586 1717 dbSNP
rs1287479053 1720 dbSNP
rs748416924 1725 dbSNP
rs199546497 1735 dbSNP
rs1057267751 1739 dbSNP
rs1226326426 1741 dbSNP
rs760411150 1743 dbSNP
rs1270949278 1747 dbSNP
rs765975241 1752 dbSNP
rs1436033495 1753 dbSNP
rs895886586 1754 dbSNP
rs967218516 1760 dbSNP
rs1417678697 1762 dbSNP
rs1010692758 1766 dbSNP
rs1345443391 1767 dbSNP
rs986606081 1773 dbSNP
rs536216066 1774 dbSNP
rs1427204616 1775 dbSNP
rs1377736922 1776 dbSNP
rs1168072685 1779 dbSNP
rs1477501133 1781 dbSNP
rs1244754526 1782 dbSNP
rs368328165 1790 dbSNP
rs1201401781 1792 dbSNP
rs902438643 1793 dbSNP
rs942641487 1805 dbSNP
rs371557386 1806 dbSNP
rs1316434455 1812 dbSNP
rs1000752397 1817 dbSNP
rs1309262893 1820 dbSNP
rs1032155888 1825 dbSNP
rs974688716 1826 dbSNP
rs964486833 1827 dbSNP
rs921982283 1837 dbSNP
rs1030075603 1844 dbSNP
rs113901426 1848 dbSNP
rs1352507936 1854 dbSNP
rs1306677554 1856 dbSNP
rs1412232961 1857 dbSNP
rs1283938163 1860 dbSNP
rs1049183386 1863 dbSNP
rs1329017324 1864 dbSNP
rs1447827901 1866 dbSNP
rs1218127595 1872 dbSNP
rs886597129 1873 dbSNP
rs1235937352 1879 dbSNP
rs983528355 1880 dbSNP
rs1483007474 1891 dbSNP
rs189418170 1895 dbSNP
rs56667127 1899 dbSNP
rs1410958973 1903 dbSNP
rs773506850 1915 dbSNP
rs907430034 1921 dbSNP
rs544096430 1924 dbSNP
rs1437696002 1930 dbSNP
rs7242947 1938 dbSNP
rs1157860645 1946 dbSNP
rs942293633 1949 dbSNP
rs565483281 1957 dbSNP
rs1034412296 1958 dbSNP
rs1265173076 1962 dbSNP
rs765837774 1963 dbSNP
rs1328838622 1968 dbSNP
rs1011734866 1973 dbSNP
rs141509274 1974 dbSNP
rs1374786330 1976 dbSNP
rs541674517 1977 dbSNP
rs937517211 1983 dbSNP
rs758531647 1991 dbSNP
rs986574079 1995 dbSNP
rs1452780306 2002 dbSNP
rs1338219606 2009 dbSNP
rs895923119 2014 dbSNP
rs946120923 2015 dbSNP
rs1042116332 2019 dbSNP
rs1019421858 2021 dbSNP
rs963917854 2022 dbSNP
rs975377146 2023 dbSNP
rs1000752031 2031 dbSNP
rs559464701 2035 dbSNP
rs1238556143 2040 dbSNP
rs1464663338 2042 dbSNP
rs1266623982 2043 dbSNP
rs73409574 2044 dbSNP
rs985203049 2045 dbSNP
rs747091531 2047 dbSNP
rs1351773249 2054 dbSNP
rs1312571851 2059 dbSNP
rs995997319 2062 dbSNP
rs146279939 2074 dbSNP
rs563298434 2075 dbSNP
rs954616419 2080 dbSNP
rs1452909234 2086 dbSNP
rs1461024396 2088 dbSNP
rs1286874878 2093 dbSNP
rs534242969 2095 dbSNP
rs907394007 2104 dbSNP
rs1345595332 2107 dbSNP
rs1163902481 2109 dbSNP
rs1403552447 2115 dbSNP
rs1245003918 2117 dbSNP
rs866669516 2125 dbSNP
rs1456391639 2130 dbSNP
rs1449061000 2132 dbSNP
rs1180925816 2142 dbSNP
rs1246475957 2143 dbSNP
rs1188528713 2147 dbSNP
rs1486375956 2148 dbSNP
rs1233372588 2162 dbSNP
rs1056086170 2163 dbSNP
rs138070097 2164 dbSNP
rs1293283862 2168 dbSNP
rs1246134122 2171 dbSNP
rs1340866729 2186 dbSNP
rs1292944945 2194 dbSNP
rs1424087501 2194 dbSNP
rs963104529 2196 dbSNP
rs1362329567 2207 dbSNP
rs200826824 2209 dbSNP
rs1011204490 2214 dbSNP
rs927571474 2216 dbSNP
rs958936865 2217 dbSNP
rs1371440001 2226 dbSNP
rs552437814 2226 dbSNP
rs1172719446 2236 dbSNP
rs1429396789 2242 dbSNP
rs1020390412 2243 dbSNP
rs902914656 2244 dbSNP
rs1007962697 2245 dbSNP
rs1270162943 2250 dbSNP
rs570447622 2252 dbSNP
rs917387487 2254 dbSNP
rs946143491 2257 dbSNP
rs1249124414 2258 dbSNP
rs1041776808 2273 dbSNP
rs1336842163 2274 dbSNP
rs1307784855 2278 dbSNP
rs1300300543 2281 dbSNP
rs926019017 2281 dbSNP
rs1444880419 2285 dbSNP
rs1347187632 2297 dbSNP
rs1019386213 2310 dbSNP
rs1039670157 2311 dbSNP
rs1300036603 2312 dbSNP
rs900433022 2315 dbSNP
rs996008564 2322 dbSNP
rs781283895 2325 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' guccgugcccucgagUCCACu 5'
                         ||||| 
Target 5' ---------------AGGUGa 3'
1 - 6
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760630. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_020412 | 3UTR | CUCAGGUGAUCCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAGGCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_020412 | 3UTR | GAUCCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_020412 | 3UTR | CCACCAUGCCCAGCUAGUUUUUUUGUAUUUUUAGUAGAGACAGGGUUUCACUAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAGGUGAUCCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAGGCAUGAGCCACUGCACCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_020412 | 3UTR | CCACCAUGCCCAGCUAGUUUUUUUGUAUUUUUAGUAGAGACAGGGUUUCACUAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAGGUGAUCCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_020412 | 3UTR | AUGCCCAGCUAGUUUUUUUGUAUUUUUAGUAGAGACAGGGUUUCACUAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAGGUGAUCCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_020412 | 3UTR | CACCACCAUGCCCAGCUAGUUUUUUUGUAUUUUUAGUAGAGACAGGGUUUCACUAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAGGUGAUCCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAGGCAUGAGCCACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_020412 | 3UTR | AGGCUGGUCUUGAACUCCUGACCUCAGGUGAUCCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_020412 | 3UTR | CCAUGCCCAGCUAGUUUUUUUGUAUUUUUAGUAGAGACAGGGUUUCACUAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAGGUGAUCCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAGGCAUGAGCCACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000526991.2 | 3UTR | AGGUGAUCCGCCCACCUCAGCCUCCCAAAGUGCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA -0.241 0.3 -0.500 0.13 7 Click to see details
THCA -0.241 0.3 -0.500 0.13 7 Click to see details
THCA -0.241 0.3 -0.500 0.13 7 Click to see details
THCA -0.241 0.3 -0.500 0.13 7 Click to see details
THCA -0.241 0.3 -0.500 0.13 7 Click to see details
THCA -0.241 0.3 -0.500 0.13 7 Click to see details
102 hsa-miR-3622b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT076713 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT080212 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT081398 GTPBP3 GTP binding protein 3, mitochondrial 2 2
MIRT107158 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT254071 BACH1 BTB domain and CNC homolog 1 2 2
MIRT409790 FOXO3 forkhead box O3 2 2
MIRT448679 MAPK9 mitogen-activated protein kinase 9 2 2
MIRT450206 ABHD15 abhydrolase domain containing 15 2 2
MIRT486621 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT489267 TTLL1 tubulin tyrosine ligase like 1 2 2
MIRT493117 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT494570 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497395 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT504900 CCDC86 coiled-coil domain containing 86 2 2
MIRT505192 USP46 ubiquitin specific peptidase 46 2 4
MIRT506522 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT508162 ABCC5 ATP binding cassette subfamily C member 5 2 8
MIRT508545 PARVG parvin gamma 2 4
MIRT509850 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT510088 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 8
MIRT512094 CRK CRK proto-oncogene, adaptor protein 2 4
MIRT515381 RPL7 ribosomal protein L7 2 2
MIRT519176 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519964 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT522292 NKAP NFKB activating protein 2 2
MIRT523160 HMGB2 high mobility group box 2 2 4
MIRT525314 FANCA Fanconi anemia complementation group A 2 2
MIRT528194 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT532885 ZNF451 zinc finger protein 451 2 2
MIRT538209 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT539497 ACTN4 actinin alpha 4 2 2
MIRT554600 RRAGC Ras related GTP binding C 2 2
MIRT562444 DCTN6 dynactin subunit 6 2 2
MIRT562748 AOC3 amine oxidase, copper containing 3 2 2
MIRT565798 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT565838 SCML2 Scm polycomb group protein like 2 2 2
MIRT566072 RCC2 regulator of chromosome condensation 2 2 2
MIRT566104 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT572407 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT576198 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576313 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576651 Mill2 MHC I like leukocyte 2 1 1
MIRT576859 Socs6 suppressor of cytokine signaling 6 2 2
MIRT606819 BICD2 BICD cargo adaptor 2 2 2
MIRT610738 NUDT16 nudix hydrolase 16 2 4
MIRT614798 RORA RAR related orphan receptor A 2 2
MIRT619006 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 2
MIRT619420 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT620405 MYO1H myosin IH 2 2
MIRT624869 ABHD13 abhydrolase domain containing 13 2 2
MIRT633527 ZFP30 ZFP30 zinc finger protein 2 2
MIRT633927 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT636611 CLIC5 chloride intracellular channel 5 2 2
MIRT640616 MIOX myo-inositol oxygenase 2 2
MIRT642605 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT644624 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT655113 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT658976 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT661495 CHMP1B charged multivesicular body protein 1B 2 2
MIRT662996 TMEM59 transmembrane protein 59 2 2
MIRT663075 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT665405 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT666106 SSR1 signal sequence receptor subunit 1 2 2
MIRT669562 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT670070 ZNF783 zinc finger family member 783 2 2
MIRT671192 ZNF891 zinc finger protein 891 2 2
MIRT675361 KLHL26 kelch like family member 26 2 2
MIRT678857 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT679443 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT684163 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT684543 ZNF460 zinc finger protein 460 2 2
MIRT684674 SLC2A11 solute carrier family 2 member 11 2 2
MIRT684971 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT686006 NEK4 NIMA related kinase 4 2 2
MIRT687758 KIAA1328 KIAA1328 2 2
MIRT688961 ATXN3 ataxin 3 2 2
MIRT689409 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT690001 MMP17 matrix metallopeptidase 17 2 2
MIRT690165 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690202 C5orf45 MRN complex interacting protein 2 2
MIRT690477 ZNF33A zinc finger protein 33A 2 2
MIRT690566 MICA MHC class I polypeptide-related sequence A 2 2
MIRT692160 C10orf111 chromosome 10 open reading frame 111 2 2
MIRT693430 PLGLB2 plasminogen-like B2 2 2
MIRT693547 ZNF708 zinc finger protein 708 2 2
MIRT693697 PLGLB1 plasminogen-like B1 2 2
MIRT695006 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT698525 TFRC transferrin receptor 2 2
MIRT699574 SIKE1 suppressor of IKBKE 1 2 2
MIRT703446 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704397 CTSS cathepsin S 2 2
MIRT704485 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT709822 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT710859 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT711893 INSIG2 insulin induced gene 2 2 2
MIRT713796 CPLX2 complexin 2 2 2
MIRT718800 C1GALT1C1 C1GALT1 specific chaperone 1 2 2
MIRT719501 SEC24B SEC24 homolog B, COPII coat complex component 2 2
MIRT719722 PDE6B phosphodiesterase 6B 2 2
MIRT722204 URM1 ubiquitin related modifier 1 2 2
MIRT723523 CLPTM1L CLPTM1 like 2 2
MIRT725471 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3622b-3p Platinum 23939 sensitive tissue
hsa-miR-3622b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3622b-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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