pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NLRC3   
Synonyms CLR16.2, NOD3
Description NLR family CARD domain containing 3
Transcript NM_178844   
Expression
Putative miRNA Targets on NLRC3
3'UTR of NLRC3
(miRNA target sites are highlighted)
>NLRC3|NM_178844|3'UTR
   1 TCCTGGTGGACGGATCAGGAGAATGGGCAGATGCTCAGCTGGAAGCTTTTGAACAGAAAGGCCGACTTCTGGGGGGCCTG
  81 TCTGGGAGCTGGGAACGCTGCTTGCTCAGCACGAGAGCCGGGCTCTGCAGGGAGGAAGGAGAGGTGCTGCCGGAGGAGGT
 161 CGTGAGCTCCTCTTCTGCTGCAGGAGTGGTCCAGGCAGGGGGTGACGGGTACTCTGTTATGGCACAGAGAAGGGAGGGGC
 241 CACCCCCAAGGGACTAGGGGCCAAAGGCCTGAAAGCTGAGCAGTACAGGAGGCTGGTTCCAGCTTTACACCCTGAGGACT
 321 TCATGTGTCCCCAACCTTTAAAAATGTTTATTACTGCCCCTTTCCACTCACCTGGTTAAAAATCATCCCATGCTCTGAGA
 401 TGAGCTGCCACCTCAAGCCCGTGAGGAGCATCCGTTTGGTAGGGGTAACAGAGGGGACCCTTCTTTATCTTCTCAAGAAG
 481 AAGATTTCAGGGTATCATCCTTACAGACATGAAAAAGCTATGGGAAAATTGTGAAGATAAATGAAAGTTTTAATTCTAGG
 561 ATTCTGGAAACAGAGACAGTAAGAGTTCTCCAAGGATTTTGCCTTTTTTGTTTGTTTTTGAGATGGAGTCTCGCTCTTGT
 641 CGCCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCCCTGCAACCTCCGCCTCCCGGGTTCATGTGATTCTCCTGCCTCA
 721 GCCTCCCCAGTAGCTGGGAATACAGGCACCCGCCACCATGCCCGGCTAATTTTTGTAGTTTTAGTAGAGACGGGGTTTCA
 801 TCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCATCAGCCTGGGCCTCCCAAAGTACTGGGATTACAG
 881 GCATGAGCCACCACACCTGGCCCCATTTTTTATTTATTACAAAATCAAAGACATGGGTGATGCCTGGCACATGTTGTCTG
 961 GAGTCTGGCACACTGGTTATCAATAGCACATTCAGTGTATTCAGTGATGTCATTCTTTATTTATTTTTGAGACAGAATCT
1041 GTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGTAGGCTCTACCTCATGGGTTCCAGTGATTCTCCTGCCT
1121 CGGCCTCCCAAGTAGTTGGGTCTACAGGCACGCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTT
1201 CACCATGTTGATCAGGCTGGTCTTTAACTCCTGACCTCAAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTAC
1281 AGGTGTGAGCCACTGCACCTGGCAGTGATGTCATTCCTTACTAGGCTTCCAAAGCCACTGCTGTGGCCACAGCTTCCATG
1361 GAGACAGGCAAGCTGAGCCTCTATGTGGCACCAATTCCTGCAGCTGTTTGTGTTGGAGGGAAAAAAATCCAAATGGACAT
1441 CAACAGCTTTCATCAACTAAATAACCACAGAAAATATTTATGAAGACTATAAAGCAATGATTACTTTTGAATTGGAAAGG
1521 AATCACTATTATTTGAAATGTTTCTTCAAAAGTGAGCATCCGGACAGGAACCATCATGGATGCTGAGGCCATGGATGAAG
1601 GCCTACTCGGGAAGATGATATCCTTGCAGTCTCAAAACGGCACCCCACAAAGGTGATATCCTAATTTACAAAGGGAAAAA
1681 GGTACCTTAATCTGAAATCTGGCAAATGCAGCCTCAACAGAAGTGACAGAATTGAACATCGCCAATAATGGGACACACAG
1761 ACATCACATGCCCCCAGTCTGATGCACCACGGAGTCGTCTCTGATGTATTCTTGTCAAAAAATGTTTGCCTGATTCTAAT
1841 CATGAAAGAACAATTAGAAAAAATCCAAATTGACAGATATTCTGCAGAATAAATGGCCTGACCTCATCAAAAACATCAAT
1921 GTCATGAAAAACACAAAACATTGCAGATAGCGTGAAATTAAAGATTACAGAGATATAATTTAATGCAAGATCTCTGACTG
2001 GATCCTAGACTGCAGGAAAAAGTCTGCTATAAAGAACATTTGGATCACTTGTAGTAGCTGGGAAATAAAACAAAACATTA
2081 TTTGTAAAAGGGGGGAAATCTGAACATGGGTCTTGCAGTATTTATGACAGTTTTTGCGGGGCAGAGATTTCTAGATTGAC
2161 AGCTGTTTTAGTACTTTCAAGGTGATGCTCTGTCTGCTGGTTTGCATTGTTTCTGTCTGAGTTAAGAGACTGGCAGAACA
2241 CAGAGTTGCAGTAGCCAAACACTGGAGAAAGCTGGGCCCTACAGAAACCTAACGCTGAAGAAACCTCAGGAGCCAAACTG
2321 GTGGAGAAAACAAAGAGTCCTCCCTCTCTCCCTTTTCAAATAATGATCATACATCTTCAAGCTGTCTGAAATGGTTAAGG
2401 AGTTCAGTCTGTCGTCAGGCACACACCAGAGCCAGCTAGCCCACACAGACCCCATCAGAGCAAAACAGACAAGAGAATTT
2481 AATTCATATCCACATAGAAAGGACTTCTAGGTAGGAGGTAGACCCTTTAGCTCCCTTCCAATTAAAGGAGTCCCCAATTC
2561 TGGCACCTGAGAGTCCCCTGGGTCTAACAGCTATGATATTTATGTAGTGTGTTGCTTACCTAAATGAATACAATTTCCTT
2641 CCAGACACGTGACACTGATATTAAAGTGCTAATGAGAGGGATCTATTTCTTCTTGTACGCTAAAAGAGAAACAGCAGTTC
2721 AGATTTCCCATCAGAAGTCCGAGGACTTTGTTCTTGATAACTACTACCAATAAAAATTGAGTATTTGAAAAAAAAAAAAA
2801 AAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' tgATTCTCCTGCCTCAGCCTc 3'
705 - 725 156.00 -17.50
2
miRNA  3' gguagaAGGAAGUCGGAg 5'
                ||| ||||||| 
Target 5' aggtgaTCCATCAGCCTg 3'
837 - 854 152.00 -13.40
3
miRNA  3' ggUAGAAG---GAAGUCGGAg 5'
            |||  |   | ||||||| 
Target 5' tgATCCACCCACCTCAGCCTc 3'
1242 - 1262 144.00 -18.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
103374 2 ClinVar
COSN26249790 5 COSMIC
COSN30504235 11 COSMIC
COSN30492931 12 COSMIC
COSN31611758 21 COSMIC
COSN24381773 112 COSMIC
COSN31580719 113 COSMIC
COSN30164232 120 COSMIC
COSN30528401 141 COSMIC
COSN31603990 202 COSMIC
COSN30335741 665 COSMIC
COSN22103811 847 COSMIC
COSN25351128 1953 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs199475947 2 dbSNP
rs771388702 4 dbSNP
rs1301811223 5 dbSNP
rs749687897 6 dbSNP
rs1374211423 10 dbSNP
rs377140210 11 dbSNP
rs188211588 12 dbSNP
rs1389954092 14 dbSNP
rs748639792 15 dbSNP
rs1425840731 18 dbSNP
rs781369180 19 dbSNP
rs1181400146 20 dbSNP
rs1043346940 21 dbSNP
rs779921474 22 dbSNP
rs768610320 23 dbSNP
rs1341110485 24 dbSNP
rs747313937 26 dbSNP
rs780151994 27 dbSNP
rs1321997132 30 dbSNP
rs1475895907 31 dbSNP
rs1311346494 32 dbSNP
rs751614119 40 dbSNP
rs1163873488 42 dbSNP
rs1393748747 43 dbSNP
rs758577997 45 dbSNP
rs750247613 46 dbSNP
rs1160958234 48 dbSNP
rs1411048567 49 dbSNP
rs993839468 54 dbSNP
rs1345599640 56 dbSNP
rs1465672298 57 dbSNP
rs777791287 62 dbSNP
rs1315495206 63 dbSNP
rs185340145 64 dbSNP
rs76430099 71 dbSNP
rs1296811376 72 dbSNP
rs894909247 74 dbSNP
rs1463666730 78 dbSNP
rs928416895 84 dbSNP
rs1371462345 88 dbSNP
rs1277747875 90 dbSNP
rs1486472235 91 dbSNP
rs753719144 96 dbSNP
rs540810127 97 dbSNP
rs766222641 101 dbSNP
rs1178882011 103 dbSNP
rs1408367031 107 dbSNP
rs1432370156 111 dbSNP
rs1027310058 112 dbSNP
rs193153545 112 dbSNP
rs1435621247 113 dbSNP
rs902437660 116 dbSNP
rs961608305 119 dbSNP
rs1387190004 120 dbSNP
rs1042322065 124 dbSNP
rs1424336385 127 dbSNP
rs74368915 135 dbSNP
rs1306150198 144 dbSNP
rs1349540328 146 dbSNP
rs893760399 148 dbSNP
rs1175325244 150 dbSNP
rs1039052843 151 dbSNP
rs1004915881 152 dbSNP
rs943420528 157 dbSNP
rs1233379447 158 dbSNP
rs1221062597 159 dbSNP
rs1191488716 160 dbSNP
rs912003337 162 dbSNP
rs1051886686 166 dbSNP
rs1168217145 167 dbSNP
rs1356581942 172 dbSNP
rs1411729462 173 dbSNP
rs1171273942 175 dbSNP
rs987635261 183 dbSNP
rs1456859609 185 dbSNP
rs1328296416 189 dbSNP
rs188193827 195 dbSNP
rs919432455 199 dbSNP
rs575549666 202 dbSNP
rs1359510318 204 dbSNP
rs183395995 206 dbSNP
rs78880758 207 dbSNP
rs1320990323 211 dbSNP
rs1305286725 214 dbSNP
rs1274757729 216 dbSNP
rs1016980696 219 dbSNP
rs202021400 220 dbSNP
rs1187774085 223 dbSNP
rs59073403 225 dbSNP
rs1187134984 229 dbSNP
rs1413206201 239 dbSNP
rs75641087 242 dbSNP
rs1302824837 243 dbSNP
rs1167753077 248 dbSNP
rs1395924333 257 dbSNP
rs1457038446 259 dbSNP
rs1319007719 260 dbSNP
rs1034772269 267 dbSNP
rs533721765 273 dbSNP
rs1343048191 285 dbSNP
rs56842282 285 dbSNP
rs1020789912 287 dbSNP
rs371549842 289 dbSNP
rs1230991229 293 dbSNP
rs1294213043 294 dbSNP
rs1011216596 302 dbSNP
rs1295050838 307 dbSNP
rs1458337805 317 dbSNP
rs938374415 322 dbSNP
rs774026918 331 dbSNP
rs1448917294 333 dbSNP
rs1363225123 336 dbSNP
rs979856205 357 dbSNP
rs1484723324 361 dbSNP
rs751821741 378 dbSNP
rs893737829 389 dbSNP
rs919745661 392 dbSNP
rs1039434488 409 dbSNP
rs943421945 412 dbSNP
rs60782450 415 dbSNP
rs1051815015 416 dbSNP
rs1410656640 418 dbSNP
rs190887739 420 dbSNP
rs919399616 421 dbSNP
rs762711578 428 dbSNP
rs942260860 433 dbSNP
rs1268765851 434 dbSNP
rs561850550 437 dbSNP
rs916186327 438 dbSNP
rs1227741573 439 dbSNP
rs368557076 445 dbSNP
rs1277490039 446 dbSNP
rs1352587084 462 dbSNP
rs75784928 469 dbSNP
rs996238375 471 dbSNP
rs959068489 479 dbSNP
rs1484836249 482 dbSNP
rs576305159 485 dbSNP
rs1258341082 488 dbSNP
rs1482989951 490 dbSNP
rs1180288009 493 dbSNP
rs1235161577 494 dbSNP
rs1470717087 501 dbSNP
rs1172401780 511 dbSNP
rs1394081079 513 dbSNP
rs1034659065 516 dbSNP
rs1174931073 521 dbSNP
rs769503857 523 dbSNP
rs981788058 524 dbSNP
rs376976051 530 dbSNP
rs1326752573 534 dbSNP
rs746186475 536 dbSNP
rs1337534161 538 dbSNP
rs1221855736 542 dbSNP
rs761475223 543 dbSNP
rs1333106457 544 dbSNP
rs1274075681 551 dbSNP
rs186866951 556 dbSNP
rs539529187 559 dbSNP
rs1341534141 560 dbSNP
rs893711243 567 dbSNP
rs1371741381 573 dbSNP
rs1275687197 575 dbSNP
rs1438952023 577 dbSNP
rs1198541192 584 dbSNP
rs1251558032 589 dbSNP
rs1017554176 595 dbSNP
rs1195125874 596 dbSNP
rs1458782229 599 dbSNP
rs1461040593 604 dbSNP
rs182176236 607 dbSNP
rs1175457438 609 dbSNP
rs890422364 610 dbSNP
rs938343310 610 dbSNP
rs1194759953 614 dbSNP
rs906844755 614 dbSNP
rs1396970436 616 dbSNP
rs768211321 618 dbSNP
rs1198911318 623 dbSNP
rs948468619 625 dbSNP
rs536646457 626 dbSNP
rs993550158 632 dbSNP
rs1225312742 633 dbSNP
rs868246380 634 dbSNP
rs973914614 639 dbSNP
rs533585669 641 dbSNP
rs564620444 642 dbSNP
rs544726223 648 dbSNP
rs1470097147 654 dbSNP
rs1214779841 659 dbSNP
rs1253203407 660 dbSNP
rs1427607684 661 dbSNP
rs1262898439 665 dbSNP
rs1374323468 668 dbSNP
rs1202248970 672 dbSNP
rs1164141178 675 dbSNP
rs9939613 686 dbSNP
rs35362642 689 dbSNP
rs1275718127 693 dbSNP
rs916142424 695 dbSNP
rs561987295 696 dbSNP
rs938941009 697 dbSNP
rs1380776414 698 dbSNP
rs955275274 704 dbSNP
rs1030314907 709 dbSNP
rs964814594 710 dbSNP
rs1337634427 712 dbSNP
rs1234258714 718 dbSNP
rs138769959 722 dbSNP
rs199983530 729 dbSNP
rs1485315598 737 dbSNP
rs1203005268 740 dbSNP
rs1263146966 745 dbSNP
rs1447063404 746 dbSNP
rs146019666 749 dbSNP
rs553665529 750 dbSNP
rs865787488 751 dbSNP
rs1476161727 752 dbSNP
rs533791349 756 dbSNP
rs913675156 759 dbSNP
rs577425479 763 dbSNP
rs1412582878 764 dbSNP
rs1031809335 767 dbSNP
rs1290843608 775 dbSNP
rs1172748557 777 dbSNP
rs557521068 779 dbSNP
rs1311189799 790 dbSNP
rs190381128 791 dbSNP
rs370809951 792 dbSNP
rs1044024595 796 dbSNP
rs1315516852 810 dbSNP
rs1017857263 814 dbSNP
rs1262094111 815 dbSNP
rs753843546 816 dbSNP
rs954621970 817 dbSNP
rs1182111492 822 dbSNP
rs1444440625 823 dbSNP
rs566332411 838 dbSNP
rs549421191 839 dbSNP
rs948411108 840 dbSNP
rs57343844 856 dbSNP
rs1364575806 861 dbSNP
rs1276844912 862 dbSNP
rs1229314589 869 dbSNP
rs750204197 870 dbSNP
rs554351163 885 dbSNP
rs1037825331 888 dbSNP
rs1006728215 892 dbSNP
rs894606840 894 dbSNP
rs1298089845 897 dbSNP
rs1371887870 901 dbSNP
rs939793694 911 dbSNP
rs200113282 912 dbSNP
rs1377137177 914 dbSNP
rs76854598 919 dbSNP
rs1277499592 931 dbSNP
rs1341996481 934 dbSNP
rs1334588422 935 dbSNP
rs938908207 939 dbSNP
rs1250661739 943 dbSNP
rs928920136 947 dbSNP
rs1169908174 948 dbSNP
rs761374203 951 dbSNP
rs566450530 953 dbSNP
rs921211628 953 dbSNP
rs913565023 954 dbSNP
rs1191995789 955 dbSNP
rs186487217 960 dbSNP
rs1161936096 964 dbSNP
rs150231504 968 dbSNP
rs958045570 971 dbSNP
rs1435409523 977 dbSNP
rs965115304 979 dbSNP
rs910355420 985 dbSNP
rs1464010267 989 dbSNP
rs1299038715 997 dbSNP
rs140995501 1015 dbSNP
rs956128990 1018 dbSNP
rs775313701 1019 dbSNP
rs1205928198 1020 dbSNP
rs1372775809 1026 dbSNP
rs572344166 1027 dbSNP
rs117712684 1028 dbSNP
rs1226482217 1029 dbSNP
rs1305653301 1029 dbSNP
rs1358461616 1035 dbSNP
rs1284568395 1044 dbSNP
rs530935160 1045 dbSNP
rs1258398856 1052 dbSNP
rs1030290469 1056 dbSNP
rs993491217 1061 dbSNP
rs1012575824 1067 dbSNP
rs1348218070 1071 dbSNP
rs898120722 1079 dbSNP
rs1255085847 1083 dbSNP
rs550004388 1088 dbSNP
rs1309419182 1097 dbSNP
rs35409672 1100 dbSNP
rs1417471640 1104 dbSNP
rs1430758604 1106 dbSNP
rs1016683654 1111 dbSNP
rs1003939689 1112 dbSNP
rs1321025224 1114 dbSNP
rs1394481125 1119 dbSNP
rs1407561849 1121 dbSNP
rs1328404510 1122 dbSNP
rs1396155828 1131 dbSNP
rs886871242 1136 dbSNP
rs1287710181 1138 dbSNP
rs1006285177 1141 dbSNP
rs1158320335 1142 dbSNP
rs894564961 1143 dbSNP
rs1359271292 1147 dbSNP
rs1414679724 1149 dbSNP
rs541924078 1151 dbSNP
rs1334114661 1152 dbSNP
rs573211599 1153 dbSNP
rs776180512 1154 dbSNP
rs1003020320 1155 dbSNP
rs559281935 1163 dbSNP
rs1486887985 1165 dbSNP
rs148101301 1168 dbSNP
rs1417750800 1177 dbSNP
rs1474524559 1184 dbSNP
rs1167498801 1193 dbSNP
rs1414980981 1209 dbSNP
rs946293384 1210 dbSNP
rs1279124468 1211 dbSNP
rs1201217051 1212 dbSNP
rs990187237 1213 dbSNP
rs1432247033 1215 dbSNP
rs1298328530 1219 dbSNP
rs1347439447 1224 dbSNP
rs1609847 1225 dbSNP
rs1356777031 1233 dbSNP
rs181896819 1252 dbSNP
rs1290571156 1254 dbSNP
rs1223171821 1256 dbSNP
rs1326769682 1266 dbSNP
rs1053875227 1275 dbSNP
rs1319006819 1279 dbSNP
rs1217372062 1282 dbSNP
rs1256938068 1285 dbSNP
rs936419084 1287 dbSNP
rs538031622 1289 dbSNP
rs1228562648 1294 dbSNP
rs1238615178 1302 dbSNP
rs1469939701 1317 dbSNP
rs1344537684 1321 dbSNP
rs1405314509 1323 dbSNP
rs910324857 1325 dbSNP
rs1158656528 1326 dbSNP
rs575314302 1335 dbSNP
rs544702437 1339 dbSNP
rs1222998389 1345 dbSNP
rs868612225 1353 dbSNP
rs547734761 1360 dbSNP
rs535154595 1361 dbSNP
rs1456138396 1367 dbSNP
rs1441182166 1383 dbSNP
rs532455342 1388 dbSNP
rs971937712 1401 dbSNP
rs1160450751 1412 dbSNP
rs1241154166 1414 dbSNP
rs191880522 1416 dbSNP
rs1480232669 1435 dbSNP
rs1423375648 1442 dbSNP
rs527695642 1446 dbSNP
rs369430085 1453 dbSNP
rs1478369722 1456 dbSNP
rs1016238512 1471 dbSNP
rs1003910361 1482 dbSNP
rs1180043464 1490 dbSNP
rs985225749 1494 dbSNP
rs1441099992 1509 dbSNP
rs546607443 1512 dbSNP
rs1452000225 1519 dbSNP
rs1034437020 1524 dbSNP
rs1402766084 1554 dbSNP
rs1269769214 1556 dbSNP
rs998013954 1558 dbSNP
rs1002920608 1559 dbSNP
rs540180665 1560 dbSNP
rs577346816 1561 dbSNP
rs71388521 1562 dbSNP
rs751684785 1567 dbSNP
rs1276126323 1568 dbSNP
rs531150268 1576 dbSNP
rs562114103 1581 dbSNP
rs548671972 1583 dbSNP
rs1236556047 1588 dbSNP
rs747291289 1590 dbSNP
rs1367645416 1593 dbSNP
rs1339227779 1598 dbSNP
rs915189787 1601 dbSNP
rs1275795255 1607 dbSNP
rs528568918 1608 dbSNP
rs934698165 1609 dbSNP
rs1452210898 1619 dbSNP
rs1200326421 1621 dbSNP
rs1377699769 1627 dbSNP
rs1053436676 1633 dbSNP
rs936372281 1634 dbSNP
rs1321609232 1638 dbSNP
rs1465918069 1638 dbSNP
rs186603257 1642 dbSNP
rs1388773563 1643 dbSNP
rs1357813030 1644 dbSNP
rs1324222652 1645 dbSNP
rs981457300 1646 dbSNP
rs1225421956 1647 dbSNP
rs1280614151 1657 dbSNP
rs1050138952 1659 dbSNP
rs1134603 1660 dbSNP
rs916040845 1661 dbSNP
rs772183034 1708 dbSNP
rs1211275904 1710 dbSNP
rs991684379 1712 dbSNP
rs1415259883 1718 dbSNP
rs923078696 1728 dbSNP
rs1445910456 1738 dbSNP
rs748209198 1740 dbSNP
rs1478119240 1741 dbSNP
rs1418824171 1748 dbSNP
rs1415397472 1754 dbSNP
rs1186821954 1760 dbSNP
rs1459303464 1762 dbSNP
rs1164046660 1768 dbSNP
rs1384574693 1772 dbSNP
rs1447577057 1790 dbSNP
rs778912005 1791 dbSNP
rs940605255 1796 dbSNP
rs533093452 1797 dbSNP
rs1323862895 1809 dbSNP
rs1246068368 1814 dbSNP
rs984806741 1830 dbSNP
rs1349567367 1837 dbSNP
rs1213761776 1854 dbSNP
rs1264741831 1858 dbSNP
rs1488537156 1864 dbSNP
rs1187124308 1868 dbSNP
rs147966529 1870 dbSNP
rs541752506 1874 dbSNP
rs1255400704 1885 dbSNP
rs1425303645 1886 dbSNP
rs2860 1887 dbSNP
rs958734129 1896 dbSNP
rs1034314506 1897 dbSNP
rs879095262 1903 dbSNP
rs1363393748 1904 dbSNP
rs1451941684 1907 dbSNP
rs1160464316 1921 dbSNP
rs756034073 1936 dbSNP
rs971467022 1937 dbSNP
rs997897915 1939 dbSNP
rs531675499 1948 dbSNP
rs1010841647 1951 dbSNP
rs899601253 1952 dbSNP
rs957638895 1958 dbSNP
rs1033712020 1968 dbSNP
rs1010761853 1972 dbSNP
rs1007149670 1974 dbSNP
rs1124285 1979 dbSNP
rs1287465654 1989 dbSNP
rs780860181 1995 dbSNP
rs1209582005 1996 dbSNP
rs1254151759 1996 dbSNP
rs750328822 1999 dbSNP
rs1225601974 2001 dbSNP
rs1344913352 2021 dbSNP
rs1200783927 2022 dbSNP
rs1052334758 2029 dbSNP
rs997240501 2032 dbSNP
rs1298931211 2037 dbSNP
rs1417499248 2051 dbSNP
rs1395992406 2052 dbSNP
rs1377343152 2054 dbSNP
rs1180727821 2056 dbSNP
rs1381221488 2061 dbSNP
rs935254344 2065 dbSNP
rs1304977333 2069 dbSNP
rs1449015815 2078 dbSNP
rs1467030252 2078 dbSNP
rs757059822 2084 dbSNP
rs1297895114 2091 dbSNP
rs903153254 2091 dbSNP
rs901622846 2092 dbSNP
rs776226497 2096 dbSNP
rs1036181038 2107 dbSNP
rs1045726330 2116 dbSNP
rs1232864931 2118 dbSNP
rs1298603894 2124 dbSNP
rs1166760637 2128 dbSNP
rs751321973 2130 dbSNP
rs940560048 2131 dbSNP
rs950148973 2133 dbSNP
rs575401888 2137 dbSNP
rs144906528 2138 dbSNP
rs763807576 2141 dbSNP
rs910117056 2146 dbSNP
rs937277743 2149 dbSNP
rs1183436209 2152 dbSNP
rs1434201462 2163 dbSNP
rs1170341591 2169 dbSNP
rs983000167 2170 dbSNP
rs1467492132 2171 dbSNP
rs951613557 2183 dbSNP
rs1029311047 2184 dbSNP
rs1439717211 2188 dbSNP
rs546050418 2191 dbSNP
rs1369087121 2192 dbSNP
rs1202620797 2197 dbSNP
rs1219370162 2201 dbSNP
rs866374618 2207 dbSNP
rs1316038720 2209 dbSNP
rs971434226 2215 dbSNP
rs1244626830 2224 dbSNP
rs1334357739 2226 dbSNP
rs541947409 2230 dbSNP
rs1315268535 2235 dbSNP
rs1229288404 2241 dbSNP
rs1261594516 2243 dbSNP
rs1488831318 2243 dbSNP
rs893603761 2243 dbSNP
rs1479107068 2246 dbSNP
rs988985607 2250 dbSNP
rs957736380 2253 dbSNP
rs1417614770 2255 dbSNP
rs1411932339 2267 dbSNP
rs1460262058 2269 dbSNP
rs1033185664 2271 dbSNP
rs1162257078 2272 dbSNP
rs1351294363 2274 dbSNP
rs999374426 2276 dbSNP
rs1371167218 2279 dbSNP
rs906472743 2282 dbSNP
rs572970339 2288 dbSNP
rs1302641243 2290 dbSNP
rs954292803 2292 dbSNP
rs142009817 2293 dbSNP
rs74343758 2294 dbSNP
rs1366689936 2297 dbSNP
rs1215110508 2298 dbSNP
rs570426857 2313 dbSNP
rs1166625475 2314 dbSNP
rs1283983994 2332 dbSNP
rs894550052 2335 dbSNP
rs901591677 2335 dbSNP
rs1036556464 2336 dbSNP
rs1004645053 2337 dbSNP
rs1415443057 2339 dbSNP
rs1411004749 2344 dbSNP
rs887583086 2345 dbSNP
rs1179486097 2349 dbSNP
rs1055918611 2350 dbSNP
rs1483840133 2351 dbSNP
rs147560718 2371 dbSNP
rs1358089240 2372 dbSNP
rs910014198 2376 dbSNP
rs1298727046 2380 dbSNP
rs1354798828 2382 dbSNP
rs1445481083 2387 dbSNP
rs1285764690 2388 dbSNP
rs937245394 2394 dbSNP
rs927237258 2399 dbSNP
rs1045703162 2413 dbSNP
rs764738314 2414 dbSNP
rs1307426047 2419 dbSNP
rs950086252 2424 dbSNP
rs913238205 2428 dbSNP
rs930184768 2431 dbSNP
rs922879102 2434 dbSNP
rs976820371 2436 dbSNP
rs14058 2441 dbSNP
rs1238411950 2442 dbSNP
rs568678293 2446 dbSNP
rs1222976167 2447 dbSNP
rs1440965715 2450 dbSNP
rs1158750148 2454 dbSNP
rs116278426 2456 dbSNP
rs1030762737 2459 dbSNP
rs528592694 2464 dbSNP
rs1286848836 2475 dbSNP
rs565821597 2479 dbSNP
rs1445862081 2491 dbSNP
rs1329528970 2492 dbSNP
rs970601270 2497 dbSNP
rs1240901627 2510 dbSNP
rs576986923 2511 dbSNP
rs1351394936 2516 dbSNP
rs1024889313 2518 dbSNP
rs1221447338 2519 dbSNP
rs1280021155 2521 dbSNP
rs1437604933 2529 dbSNP
rs1197185908 2533 dbSNP
rs1235926760 2541 dbSNP
rs149866883 2544 dbSNP
rs1178645106 2547 dbSNP
rs796362058 2550 dbSNP
rs1029959646 2555 dbSNP
rs1056205132 2557 dbSNP
rs1393001617 2558 dbSNP
rs1005614320 2563 dbSNP
rs1464891486 2564 dbSNP
rs1295182035 2566 dbSNP
rs888547153 2568 dbSNP
rs975738807 2569 dbSNP
rs1447795302 2576 dbSNP
rs1461902263 2584 dbSNP
rs1322903080 2595 dbSNP
rs1329405266 2598 dbSNP
rs1438783142 2599 dbSNP
rs562082404 2611 dbSNP
rs1156754744 2612 dbSNP
rs966066119 2613 dbSNP
rs777184193 2614 dbSNP
rs1217141881 2621 dbSNP
rs1014608577 2627 dbSNP
rs922840198 2632 dbSNP
rs1005010069 2638 dbSNP
rs1198870281 2648 dbSNP
rs1473367402 2660 dbSNP
rs887564220 2660 dbSNP
rs1027882577 2661 dbSNP
rs1247160376 2669 dbSNP
rs1412310384 2670 dbSNP
rs1168185386 2673 dbSNP
rs1477470540 2673 dbSNP
rs1197522329 2679 dbSNP
rs1041262697 2680 dbSNP
rs1430900765 2681 dbSNP
rs1388895638 2686 dbSNP
rs1407131025 2689 dbSNP
rs942946351 2692 dbSNP
rs1001359742 2696 dbSNP
rs139093457 2698 dbSNP
rs989564550 2699 dbSNP
rs56182568 2705 dbSNP
rs949971737 2708 dbSNP
rs1134597 2715 dbSNP
rs74005831 2724 dbSNP
rs1211063592 2736 dbSNP
rs970570116 2740 dbSNP
rs555871704 2741 dbSNP
rs1186637645 2745 dbSNP
rs1265330069 2745 dbSNP
rs1366887201 2746 dbSNP
rs1459645860 2748 dbSNP
rs1359966981 2750 dbSNP
rs1418015564 2753 dbSNP
rs926085315 2762 dbSNP
rs1300554949 2765 dbSNP
rs748325876 2767 dbSNP
rs1302090038 2768 dbSNP
rs932840028 2772 dbSNP
rs1034327979 2776 dbSNP
rs1005996190 2784 dbSNP
rs1246549880 2793 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' ugAUUCUCCUGCCUCAGCCUc 3'
4 - 24
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_178844 | 3UTR | CUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_178844 | 3UTR | CCUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_178844 | 3UTR | CUCCUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903832
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_b
Location of target site NM_178844 | 3UTR | CUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_178844 | 3UTR | AACUCCUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_178844 | 3UTR | UCCUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_178844 | 3UTR | UCCUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_178844 | 3UTR | UAACUCCUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_178844 | 3UTR | ACUCCUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_178844 | 3UTR | CUCCUGACCUCAAGUGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000448023.2 | 3UTR | AUGUGAUUCUCCUGCCUCAGCCUCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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