Gene Symbol |
EFTUD2
|
Synonyms |
MFDGA, MFDM, SNRNP116, Snrp116, Snu114, U5-116KD |
Description |
elongation factor Tu GTP binding domain containing 2 |
Transcript |
NM_001142605
|
Other Transcripts |
NM_004247
|
Expression |
|
Putative miRNA Targets on EFTUD2 |
|
3'UTR of EFTUD2 (miRNA target sites are highlighted) |
>EFTUD2|NM_001142605|3'UTR
1 GTGCGTGGACTCCTGGGAGCTCCTGCTCCCTACAGTGGGCTGCAACTCCTGTACTTGAAGCTGAGACCTCATATGACGTG
81 GCCTTCGTGTTGTCAGAGAGTGTCTGGAAGCTGCTGTTGCCATCTTGAACAACTCACCAACCTCCAACCCAGAGCCCCAG
161 TGAGAGAGGAGCATTTGGCCTCCTGCTTCCTTCTGTGGCCTCTGCCGGGCTCCATTCCCAAGGAAAAGAGAGGAGCTTGG
241 GCTCACAGAAAGAGAAGGGGATGAAACCCCAAGGGGCCCTATCTTTGGGATTTACATGGAATTTTATTTTCTACAAGTTT
321 GACCTTAGCCATGGTTTGCAAGTGAACAGAACATTCTGACCTCTGTCTTGCTCTGCTCCTTTCATCCTCGTCTCCCCTGC
401 CCCGTCTGGTGCTTACATTCTGAATATATGTCATCTCCCAAGAGGCTTCACTGCCTCTGCTTCCAGCTGCAGCCTCCTTC
481 CTGCCTGGGTCCCCAGGGAAGCCGCCTGCCTTTTAATTCAGTGTTCCCATGAGCGCCAAGGCCCCATTATTGCCCCCTTG
561 CTCCCACTCCATGCTGCTTCTGGGTGGAACCTAAGATGGCTTGGGAGTTGTTGGGTTCCTGCGATCAGAAGTCTACCCCA
641 CCACCTCCTCAGGAAACTGCTGCCTCCCCTAAGAATCTTCCTTGCCCTGGAGTAGGGGGCCAGAGCACTTTGATTTCCAG
721 CCATTTACTCCAAGTCCTCTCCCCAGCTACCACCAGTCCCTTACTCTGTTCTCCCCCAGTGAAAAAGAGTCTGTTGATTT
801 TCCTCAAAACTGCTTTATTAGGAATGTACCAGGGATTGAGTTAGGGGAGTTGGACAGCCCCGGCTCCTATAGGAGTCCTA
881 CTTCTCTCCAGCATCCTGTGCCATCCTCTTGACGTAATCGCTGTACATTGTGTACACAGCACCTGTGTGAGAGAAAAGAA
961 ATAATGCCCCTTGGCATCAAACCCTTC
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID |
Duplex structure |
Position |
Score |
MFE |
1
|
miRNA 3' gauacccaCCCUGUCUCUCCc 5'
|| | |||||||
Target 5' attcccaaGGAAAAGAGAGGa 3'
|
214 - 234
|
149.00 |
-12.90 |
2
|
miRNA 3' gauaccCACCCUGUCUCUCCc 5'
||| |||||||
Target 5' gccccaGTG----AGAGAGGa 3'
|
154 - 170
|
141.00 |
-10.90 |
3
|
miRNA 3' gauaccCAC-CCUGUCUCUCcc 5'
||| | |||||||
Target 5' gccttcGTGTTGTCAGAGAGtg 3'
|
81 - 102
|
131.00 |
-13.40 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|