pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC16A4   
Synonyms MCT4, MCT5
Description solute carrier family 16 member 4
Transcript NM_004696   
Expression
Putative miRNA Targets on SLC16A4
3'UTR of SLC16A4
(miRNA target sites are highlighted)
>SLC16A4|NM_004696|3'UTR
   1 AAGAAAGAAGACTGCAATCAAGTGAGAGCTAAACAAAAGAAAACCTAAACTAATGTCATTGGAAACAAAAGCTTGAAAGA
  81 AACACATCGCATCTACATTTGTAACATGAGAAGGAAAACAATTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTTT
 161 CGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGTAATCTCCGCCTCCTGGGTTCAAGGGATTCTCCTGCCTCA
 241 GCCTCCCAAGTAGCTGGGACTACAGGCACACGCCACCACACCCAGCTAATTTTTTGTATTTTTAGTAGAGGCGGGGTTTC
 321 ACCATGTTAGCCAGGATGGTCTCCATCTCCTGACCTCGTGATCCGCCCGCCTTGTCCTCCAAAGTGCTGGGATTACAGGC
 401 ATGAGCCACTGGGCGCGGCCAGATAAGTTTTTAAGGTTCCTTCTTGCTTTAGCATTCTGAGAAATGTCTAATTGGTAGTA
 481 AGACAAGAGTAATAGCAACCTGTATTGTTAGTATTTAACCAAATAGGCTAAAATTTTAATCAGGTACCTTATGTATTAAA
 561 TAGAAATCGGAATGTACCATAATAAATCCAAACTCTCAATTACGCCATGGTAATTCAGTCACTAAAATATGTAAAGATAG
 641 AAAATTTTTTAATTTAAAGAAGTGTGAAACATAGCCATTGATTGATCAGAATTCTGGAATCTGAATATTAAAACCTTACT
 721 TAGTGACTGGAATGGTATATGCTCCCTCCAAAAGTTTATCTTTGTTTATTGATTAAAGGTAATCCTTACTTTCTTTGTAT
 801 TACTTAGGTTCTTAATTAAAGGTAATCCTTACTTTCTTTGTATTACTTAGGTTCTTAAATTTCTATGATAAACATGTATT
 881 GCTAAATAATAAAAAGTATATAAAAATTGCTTTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' ttTCGCCCAGGCTGGAGTGCAGt 3'
158 - 180 153.00 -17.50
2
miRNA  3' ucGGUCGG---UUGA-GUGUCACGUCu 5'
            || |||     || || ||||| | 
Target 5' cgCCCGCCTTGTCCTCCAAAGTGCTGg 3'
364 - 390 121.00 -17.40
3
miRNA  3' ucggucgGUUGAGUGUCACGUCu 5'
                 ||| ||| |||| || 
Target 5' aagactgCAA-TCA-AGTG-AGa 3'
8 - 27 102.00 -9.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30492774 7 COSMIC
COSN31613272 28 COSMIC
COSN20074106 79 COSMIC
COSN30100847 89 COSMIC
COSN5998412 113 COSMIC
COSN30114885 120 COSMIC
COSN32052141 121 COSMIC
COSN32061573 122 COSMIC
COSN31555456 123 COSMIC
COSN31603180 184 COSMIC
COSN21405690 644 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1357360324 1 dbSNP
rs1418178309 10 dbSNP
rs1269620885 12 dbSNP
rs1219425829 15 dbSNP
rs373032812 16 dbSNP
rs1428738367 17 dbSNP
rs769121356 20 dbSNP
rs767898339 22 dbSNP
rs1159671775 28 dbSNP
rs1404709902 31 dbSNP
rs768450309 32 dbSNP
rs745403305 34 dbSNP
rs1166269565 36 dbSNP
rs202209308 39 dbSNP
rs1414079032 44 dbSNP
rs757300309 50 dbSNP
rs746795900 51 dbSNP
rs1490214629 52 dbSNP
rs1219418332 54 dbSNP
rs1046462128 55 dbSNP
rs949578659 57 dbSNP
rs566971262 58 dbSNP
rs1417900450 59 dbSNP
rs1451648387 63 dbSNP
rs895330736 65 dbSNP
rs1035126505 66 dbSNP
rs1385112858 66 dbSNP
rs1423253901 72 dbSNP
rs1321065614 77 dbSNP
rs1351099765 83 dbSNP
rs1436834606 86 dbSNP
rs553008622 88 dbSNP
rs188958304 89 dbSNP
rs147180744 96 dbSNP
rs920259471 107 dbSNP
rs370655224 108 dbSNP
rs973028771 110 dbSNP
rs1358695829 111 dbSNP
rs367937278 119 dbSNP
rs1037679567 121 dbSNP
rs1247051028 122 dbSNP
rs1322403454 132 dbSNP
rs964364808 133 dbSNP
rs1017402902 136 dbSNP
rs1341337187 138 dbSNP
rs1008630863 141 dbSNP
rs1189655844 141 dbSNP
rs1242893926 141 dbSNP
rs1415334316 141 dbSNP
rs57148886 141 dbSNP
rs575500845 141 dbSNP
rs981010335 141 dbSNP
rs1306510544 142 dbSNP
rs1390048296 145 dbSNP
rs954731034 146 dbSNP
rs1332637159 148 dbSNP
rs941078282 153 dbSNP
rs1436794888 154 dbSNP
rs1020757296 155 dbSNP
rs1381756347 159 dbSNP
rs1392906219 159 dbSNP
rs1161003211 161 dbSNP
rs1009915791 162 dbSNP
rs1331548848 164 dbSNP
rs1209580347 166 dbSNP
rs893683893 170 dbSNP
rs1368718281 171 dbSNP
rs1375871071 173 dbSNP
rs550904318 174 dbSNP
rs969596250 176 dbSNP
rs1472860752 178 dbSNP
rs1180881431 182 dbSNP
rs185712869 183 dbSNP
rs1458544769 184 dbSNP
rs1159440877 186 dbSNP
rs905184888 188 dbSNP
rs143534125 191 dbSNP
rs922448186 192 dbSNP
rs1286593394 193 dbSNP
rs1468014431 194 dbSNP
rs976543600 200 dbSNP
rs934573108 201 dbSNP
rs1282816220 202 dbSNP
rs1343336806 203 dbSNP
rs551380859 204 dbSNP
rs773790697 208 dbSNP
rs1279749539 209 dbSNP
rs1357081227 210 dbSNP
rs1260376177 215 dbSNP
rs1237069569 216 dbSNP
rs1356118494 224 dbSNP
rs1310525781 239 dbSNP
rs1440603857 240 dbSNP
rs1369482743 241 dbSNP
rs1249074817 244 dbSNP
rs1326066404 245 dbSNP
rs772274953 246 dbSNP
rs746003517 247 dbSNP
rs979068378 248 dbSNP
rs778938750 250 dbSNP
rs1182467447 251 dbSNP
rs1157643173 253 dbSNP
rs1376669638 257 dbSNP
rs1417539362 258 dbSNP
rs968104928 260 dbSNP
rs1402625247 261 dbSNP
rs528043283 268 dbSNP
rs559501598 270 dbSNP
rs1372498484 271 dbSNP
rs536687769 272 dbSNP
rs1244931655 277 dbSNP
rs137976925 281 dbSNP
rs1235670418 283 dbSNP
rs1452259714 284 dbSNP
rs1339138435 285 dbSNP
rs931566360 286 dbSNP
rs1277320900 294 dbSNP
rs1035157745 296 dbSNP
rs1261212181 296 dbSNP
rs1214524074 298 dbSNP
rs796258759 306 dbSNP
rs181689674 311 dbSNP
rs190022473 312 dbSNP
rs943038104 313 dbSNP
rs915592720 317 dbSNP
rs543376605 320 dbSNP
rs1277138158 322 dbSNP
rs577889594 324 dbSNP
rs1326340701 329 dbSNP
rs1166661537 330 dbSNP
rs1391898082 333 dbSNP
rs1317077151 340 dbSNP
rs1293069650 341 dbSNP
rs1388655121 342 dbSNP
rs551190092 344 dbSNP
rs1326224861 349 dbSNP
rs1433287578 350 dbSNP
rs1362096846 351 dbSNP
rs888134151 352 dbSNP
rs992502810 353 dbSNP
rs1021208602 357 dbSNP
rs545392994 358 dbSNP
rs1433880864 361 dbSNP
rs959933885 362 dbSNP
rs376637641 364 dbSNP
rs900890366 365 dbSNP
rs1464295830 368 dbSNP
rs572853027 369 dbSNP
rs879692224 373 dbSNP
rs868602279 374 dbSNP
rs184648501 375 dbSNP
rs958109386 380 dbSNP
rs11555380 381 dbSNP
rs1459457104 381 dbSNP
rs762257536 383 dbSNP
rs1191650990 389 dbSNP
rs1489290390 393 dbSNP
rs1032244113 396 dbSNP
rs565752844 401 dbSNP
rs756438877 403 dbSNP
rs1024910724 410 dbSNP
rs1281255222 411 dbSNP
rs924426686 412 dbSNP
rs1042991619 414 dbSNP
rs866798419 415 dbSNP
rs753002436 416 dbSNP
rs192777705 417 dbSNP
rs778936637 421 dbSNP
rs1425666912 423 dbSNP
rs959356840 430 dbSNP
rs1216276607 446 dbSNP
rs928089357 448 dbSNP
rs1411305510 450 dbSNP
rs942901246 451 dbSNP
rs982145032 462 dbSNP
rs1389857937 471 dbSNP
rs910238051 472 dbSNP
rs1301635103 474 dbSNP
rs1278445447 476 dbSNP
rs768162951 486 dbSNP
rs1293439220 493 dbSNP
rs1397096595 493 dbSNP
rs557111524 498 dbSNP
rs1016151007 500 dbSNP
rs1226198544 524 dbSNP
rs1005820783 526 dbSNP
rs987093872 528 dbSNP
rs933072859 541 dbSNP
rs1209117146 545 dbSNP
rs913691457 547 dbSNP
rs953038688 552 dbSNP
rs1484224280 557 dbSNP
rs1200957351 568 dbSNP
rs1028000821 569 dbSNP
rs1471617617 578 dbSNP
rs188151379 579 dbSNP
rs150302704 589 dbSNP
rs547598545 597 dbSNP
rs900836462 599 dbSNP
rs1174453332 600 dbSNP
rs1032107804 603 dbSNP
rs1467064300 604 dbSNP
rs1307893564 605 dbSNP
rs774875444 610 dbSNP
rs1424348412 611 dbSNP
rs998982137 612 dbSNP
rs903034285 616 dbSNP
rs1043241425 625 dbSNP
rs969240758 633 dbSNP
rs947331453 635 dbSNP
rs1313664044 636 dbSNP
rs1234945134 645 dbSNP
rs534616410 645 dbSNP
rs565669121 646 dbSNP
rs1482132511 648 dbSNP
rs1055632484 650 dbSNP
rs1188715461 651 dbSNP
rs938035333 659 dbSNP
rs1189693982 664 dbSNP
rs1269922419 666 dbSNP
rs887103207 672 dbSNP
rs1168540097 678 dbSNP
rs1388813769 704 dbSNP
rs11120 705 dbSNP
rs995981686 706 dbSNP
rs982177080 714 dbSNP
rs116156830 721 dbSNP
rs1200997973 722 dbSNP
rs908714886 736 dbSNP
rs984662304 738 dbSNP
rs563341656 746 dbSNP
rs1369491635 753 dbSNP
rs1441311922 759 dbSNP
rs550097633 769 dbSNP
rs115866365 771 dbSNP
rs1230499861 778 dbSNP
rs975643969 792 dbSNP
rs1273883066 797 dbSNP
rs1321131701 799 dbSNP
rs532942779 803 dbSNP
rs1219666938 807 dbSNP
rs1046002 813 dbSNP
rs1019266431 814 dbSNP
rs1285553344 820 dbSNP
rs998617975 821 dbSNP
rs529090663 822 dbSNP
rs1448512768 823 dbSNP
rs1451942071 835 dbSNP
rs1051345982 837 dbSNP
rs933025955 840 dbSNP
rs1404192514 850 dbSNP
rs902896116 876 dbSNP
rs913545324 878 dbSNP
rs1021365817 879 dbSNP
rs1461615431 886 dbSNP
rs1400930799 890 dbSNP
rs1362760071 893 dbSNP
rs1437198556 893 dbSNP
rs1011860930 897 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|: |||:  :: ||||||| 
Target 5' uuUCGCCCAGGCUGGAGUGCAGu 3'
1 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_001201549 | 3UTR | UUGAGACGGAGUCUCGCUCUUUCGCCCAGGCUGGAGUGCAGUGGCGCAAUCUCGGCUCACUGUAAUCUCCGCCUCCUGGGUUCAAGGGAUUCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001201549 | 3UTR | AUUUUUUUUUUUUUUUUUUUGAGACGGAGUCUCGCUCUUUCGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001201549 | 3UTR | CUCGCUCUUUCGCCCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001201549 | 3UTR | CUUUCGCCCAGGCUGGAGUGCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001201549 | 3UTR | CUCUUUCGCCCAGGCUGGAGUGCAGUGGCGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000369779.4 | 3UTR | UUUCGCCCAGGCUGGAGUGCAGUGGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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