pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF74   
Synonyms COS52, ZFP520, ZNF520, hZNF7
Description zinc finger protein 74
Transcript NM_003426   
Expression
Putative miRNA Targets on ZNF74
3'UTR of ZNF74
(miRNA target sites are highlighted)
>ZNF74|NM_003426|3'UTR
   1 CATGATGTGCTTTGGTGTCAGTAGCTGCTTTCTGAGCTACTCAACAAGGAAAGCACCCTGGTCCTCCCTGGCTCCTAGAT
  81 CCAGACCACCTTCCTCCAGGTGTGGGAGCCTTGCCTTATCACCCCCATCAGGTCTGCATGCCAGGGTGCCTCCTCTAGTT
 161 AAAGTCAGTCACCTCCCCAGAAGGGCCACACTCCAGGAGGAGTGTTGAGAGTCATTTGAGGTAGTCTTGCCACCTGTTTT
 241 CCTTGATGGGCCTGGAAGTTGTTGACAAGGGGAAAGATCTTTCTTGCCAATAAAAAGAAGGGATATCGTTGGGTGCCATG
 321 GCTCACACCTGTAATCTTAACACTGTGGGAGGCCAAGGCAAGGGGATCACTTGAGCCCAGGAGTCTAGGACCAGCCTGGA
 401 CAACATGGTGAGACCTCGTCTCTACAAAAAATGCAAAAATTAGCCAGATGTGGCGGCATGTCCCTGTGGTCCCAGCTACT
 481 CAGGAGGCTGAGGTGGGAGGATCATTTGAGCCTAGGAGGTCAAGGCTGCAGTGAGCCATGATTCACAGCACTGCACTGCA
 561 GCCTGGGTGACAAAGCAAGACCCTGTGTGAAATTAAAAGGAGGTATATCAACTGTTGTATCCTCGGACGGGCTCCTGACA
 641 CGGCTTTAATCAGGAGTTTCCTCCATAAACTATTATTTTCAGAATAATAATAAAACAAGAATTATGACTAGCATCACTTT
 721 CCAGTGAACATTATTATATTGCTAGAGAGGAGAATAATCTTGGGTGGTGGGCATTTGGAAAAAGTGAATTTCCTGGACTT
 801 AACTCATGTAAATAGCTCTACTGCAGAGCTGTGTGTTTAGTGACAGTGCAGTCAGGGGCATTCCCACAGCTGTCACAGCA
 881 CGGCCCAGCATCATTGTAGCCAGATCCTAACATGCCAACATCACCTCTTGCCATTTAGCCCCTAGTGAGAAATTGGGAGC
 961 TACCAGGCAGGTGCCCAGTGCATTCAGGGAAGATGGGCACAACATCAGGATGGGTGTGTCTGGAAGCTCCTCTTCACTGA
1041 CCAGGGCTGGGCAGGGCCACCCTGGGCTGGTGAGGCTGCCCTGCAGGGCTTCTCACTATGTAGCACCAGTCACCAGCCCA
1121 GGTCACAGAAGAAGCCCCTCCCAGCACCCACTGGAGAGGGGAAGCTGAAGCCCAGGGAGACGGGCTCCATGGTGGTCCCA
1201 CATGGAGCTGTTTTGCAAACCCTGGAAAAGGCGGCTCTCCCTGTCCCAACACTCTTCAGAGACAGGAAGACAGAGTTAAT
1281 CTTGAATGAATGTTATTTCTACTTAGTCCTAAGCAAGAATAAGCTGCCCTCTTGGTGATCATACTTTATACGGAGTGCTA
1361 TCGTTTATGAAATGCTTTCAGTATGCTTTTTAAATTATGCAGGCAAAATAACCACACTTCAGAAAATGTGGACTTCTGAA
1441 AAATAAAATCCCCATAATTCTTAATAAAACTGCCTTTTGCACTTTGATACATTACAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gucuuaggaaCGGACCCACg 5'
                    ||||||||| 
Target 5' ctgcactgcaGCCTGGGTGa 3'
551 - 570 150.00 -18.80
2
miRNA  3' guCUUAGGAACGGACCCACg 5'
            ||||  |  |:|||||| 
Target 5' gaGAATAAT--CTTGGGTGg 3'
750 - 767 138.00 -15.40
3
miRNA  3' guCUUAGGAACGGACCCACg 5'
            |:||  | | :|||||| 
Target 5' agGGAT-ATCG-TTGGGTGc 3'
299 - 316 128.00 -14.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN32074538 67 COSMIC
COSN25440667 267 COSMIC
COSN23424532 588 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs779753219 4 dbSNP
rs748839663 7 dbSNP
rs371020054 11 dbSNP
rs1287040271 12 dbSNP
rs1478885547 18 dbSNP
rs949787660 19 dbSNP
rs779491666 20 dbSNP
rs981270585 22 dbSNP
rs748398119 24 dbSNP
rs374597080 25 dbSNP
rs937314612 37 dbSNP
rs1351024815 38 dbSNP
rs1404904131 49 dbSNP
rs1351320605 58 dbSNP
rs372756462 62 dbSNP
rs893814891 69 dbSNP
rs946684392 72 dbSNP
rs1042392309 73 dbSNP
rs1472900114 75 dbSNP
rs1412786451 78 dbSNP
rs902627909 85 dbSNP
rs998261805 97 dbSNP
rs1468757721 100 dbSNP
rs1173456275 103 dbSNP
rs4014 106 dbSNP
rs1222725545 108 dbSNP
rs1464750158 112 dbSNP
rs1355193530 123 dbSNP
rs4020 127 dbSNP
rs889916699 133 dbSNP
rs1369953834 152 dbSNP
rs1299975650 153 dbSNP
rs890008665 154 dbSNP
rs1405745631 159 dbSNP
rs543244848 172 dbSNP
rs527855817 189 dbSNP
rs1283743442 195 dbSNP
rs1275093118 204 dbSNP
rs1429650934 208 dbSNP
rs1344622670 209 dbSNP
rs559844020 217 dbSNP
rs763765018 226 dbSNP
rs1259835243 234 dbSNP
rs145528305 236 dbSNP
rs1405275671 240 dbSNP
rs1019717509 243 dbSNP
rs1017577418 247 dbSNP
rs1431546822 248 dbSNP
rs965780089 251 dbSNP
rs751199152 263 dbSNP
rs1191974114 273 dbSNP
rs1203144859 289 dbSNP
rs1249289428 290 dbSNP
rs1246571158 304 dbSNP
rs1009256175 305 dbSNP
rs545416628 308 dbSNP
rs117506051 309 dbSNP
rs1255927857 313 dbSNP
rs1025252403 319 dbSNP
rs1268711675 320 dbSNP
rs968114477 332 dbSNP
rs971156155 353 dbSNP
rs1196488596 369 dbSNP
rs1227204625 371 dbSNP
rs981154439 377 dbSNP
rs1299470988 378 dbSNP
rs556429556 384 dbSNP
rs1435244101 395 dbSNP
rs1428030257 396 dbSNP
rs926537241 397 dbSNP
rs990102233 399 dbSNP
rs1467570539 406 dbSNP
rs543319205 408 dbSNP
rs959297133 414 dbSNP
rs563623019 419 dbSNP
rs992008045 422 dbSNP
rs1351666314 426 dbSNP
rs1429336700 426 dbSNP
rs1388566784 427 dbSNP
rs917743743 431 dbSNP
rs1425600429 432 dbSNP
rs1255960007 433 dbSNP
rs1180590427 439 dbSNP
rs750252847 440 dbSNP
rs914497188 448 dbSNP
rs1203823982 451 dbSNP
rs529008552 455 dbSNP
rs117877445 456 dbSNP
rs919973854 470 dbSNP
rs931312787 477 dbSNP
rs1362519742 479 dbSNP
rs1310368277 492 dbSNP
rs1397713407 496 dbSNP
rs1213884549 501 dbSNP
rs1049709224 502 dbSNP
rs890052964 504 dbSNP
rs780007273 511 dbSNP
rs1409293905 512 dbSNP
rs1008404803 517 dbSNP
rs1041223319 521 dbSNP
rs565430325 522 dbSNP
rs528220986 532 dbSNP
rs1368247727 534 dbSNP
rs1163189957 538 dbSNP
rs1426010983 539 dbSNP
rs1290513119 544 dbSNP
rs1415159179 549 dbSNP
rs1051145037 550 dbSNP
rs889971485 552 dbSNP
rs550941481 554 dbSNP
rs571119957 558 dbSNP
rs1205394714 564 dbSNP
rs1219197968 566 dbSNP
rs1487994754 572 dbSNP
rs537070115 576 dbSNP
rs967786692 580 dbSNP
rs1322186013 583 dbSNP
rs1287683379 584 dbSNP
rs778981703 588 dbSNP
rs1185275779 596 dbSNP
rs1416135628 599 dbSNP
rs1392166626 601 dbSNP
rs1292077001 603 dbSNP
rs1033324004 604 dbSNP
rs1395791650 607 dbSNP
rs1159050505 608 dbSNP
rs1445243000 611 dbSNP
rs748307171 613 dbSNP
rs151182446 616 dbSNP
rs567956308 625 dbSNP
rs753034740 626 dbSNP
rs992058609 629 dbSNP
rs1264833104 630 dbSNP
rs917795944 641 dbSNP
rs887023 642 dbSNP
rs1422543487 643 dbSNP
rs970998817 645 dbSNP
rs376700872 649 dbSNP
rs149894684 652 dbSNP
rs1345540701 671 dbSNP
rs1267305158 675 dbSNP
rs13433540 680 dbSNP
rs1034031537 697 dbSNP
rs545552208 706 dbSNP
rs1239861775 710 dbSNP
rs931389305 711 dbSNP
rs1299488744 712 dbSNP
rs1050203915 714 dbSNP
rs1456103927 716 dbSNP
rs9610309 719 dbSNP
rs1313970441 726 dbSNP
rs967738115 727 dbSNP
rs1200509033 733 dbSNP
rs184187818 737 dbSNP
rs9622211 739 dbSNP
rs563397635 747 dbSNP
rs1247168525 753 dbSNP
rs923944089 754 dbSNP
rs188689290 765 dbSNP
rs1268723615 766 dbSNP
rs1051201395 767 dbSNP
rs369992304 772 dbSNP
rs1010366718 775 dbSNP
rs2266946 797 dbSNP
rs777192092 799 dbSNP
rs758393615 801 dbSNP
rs760019573 804 dbSNP
rs1319585144 811 dbSNP
rs1396012505 812 dbSNP
rs903615523 818 dbSNP
rs1173875474 823 dbSNP
rs868753228 826 dbSNP
rs1461844530 834 dbSNP
rs1183021187 839 dbSNP
rs1389170308 844 dbSNP
rs1166440843 852 dbSNP
rs898662284 857 dbSNP
rs559152036 859 dbSNP
rs1242537407 864 dbSNP
rs930231025 866 dbSNP
rs528283617 870 dbSNP
rs1254155354 879 dbSNP
rs140772114 882 dbSNP
rs551159585 883 dbSNP
rs144901111 892 dbSNP
rs961242992 895 dbSNP
rs530383111 911 dbSNP
rs1399840929 916 dbSNP
rs1156869139 917 dbSNP
rs1339237382 922 dbSNP
rs1335535942 923 dbSNP
rs1034006417 925 dbSNP
rs369067075 926 dbSNP
rs1408161796 928 dbSNP
rs1453248806 935 dbSNP
rs779666707 945 dbSNP
rs550591128 946 dbSNP
rs1419960896 961 dbSNP
rs567956975 962 dbSNP
rs1162496131 968 dbSNP
rs763630351 969 dbSNP
rs536972885 974 dbSNP
rs1190112006 977 dbSNP
rs115235585 996 dbSNP
rs1021878681 1001 dbSNP
rs985541372 1005 dbSNP
rs1439833586 1006 dbSNP
rs796640312 1017 dbSNP
rs1228109105 1023 dbSNP
rs1030227986 1030 dbSNP
rs1373069304 1031 dbSNP
rs761507426 1038 dbSNP
rs1234492364 1043 dbSNP
rs1349301682 1049 dbSNP
rs1222377598 1052 dbSNP
rs1285986565 1068 dbSNP
rs1411264394 1076 dbSNP
rs954595250 1080 dbSNP
rs1322569921 1087 dbSNP
rs911260074 1088 dbSNP
rs567036430 1089 dbSNP
rs1392735656 1091 dbSNP
rs1265574765 1093 dbSNP
rs1324929137 1095 dbSNP
rs1472248460 1109 dbSNP
rs767253973 1132 dbSNP
rs1411310859 1139 dbSNP
rs3088200 1143 dbSNP
rs558735463 1154 dbSNP
rs974146909 1158 dbSNP
rs754562466 1161 dbSNP
rs1261401341 1163 dbSNP
rs575703282 1164 dbSNP
rs12628313 1166 dbSNP
rs554998854 1172 dbSNP
rs930116518 1182 dbSNP
rs1232470238 1201 dbSNP
rs1373559627 1203 dbSNP
rs1273906243 1208 dbSNP
rs1025997139 1209 dbSNP
rs1469470669 1231 dbSNP
rs1175309585 1233 dbSNP
rs946275764 1234 dbSNP
rs1431128621 1238 dbSNP
rs1326411639 1244 dbSNP
rs907494082 1252 dbSNP
rs1386363315 1253 dbSNP
rs1156979465 1264 dbSNP
rs1470295952 1268 dbSNP
rs938928045 1272 dbSNP
rs766141264 1276 dbSNP
rs1190798472 1283 dbSNP
rs1043648896 1284 dbSNP
rs1477200290 1303 dbSNP
rs1175615487 1309 dbSNP
rs1055906406 1313 dbSNP
rs753755244 1318 dbSNP
rs904674328 1319 dbSNP
rs1266817218 1329 dbSNP
rs936457586 1330 dbSNP
rs1217250010 1336 dbSNP
rs1329152116 1340 dbSNP
rs1277353656 1341 dbSNP
rs1334764227 1349 dbSNP
rs1217114104 1352 dbSNP
rs1439530675 1353 dbSNP
rs1349611726 1361 dbSNP
rs1054874229 1363 dbSNP
rs573579475 1364 dbSNP
rs894864168 1370 dbSNP
rs1011747972 1374 dbSNP
rs1021343118 1376 dbSNP
rs1346523111 1380 dbSNP
rs1345855234 1393 dbSNP
rs1175521489 1404 dbSNP
rs1013261904 1413 dbSNP
rs1174614202 1426 dbSNP
rs1449265367 1429 dbSNP
rs190721315 1434 dbSNP
rs1188775440 1444 dbSNP
rs998713563 1445 dbSNP
rs1030159480 1447 dbSNP
rs1024621684 1451 dbSNP
rs1281871193 1465 dbSNP
rs754918194 1469 dbSNP
rs954646145 1476 dbSNP
rs897086457 1483 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gucUUAGGAACGGACCCACg 5'
             | |||  ||||||||| 
Target 5' ugcACUCC-AGCCUGGGUGa 3'
11 - 29
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000357502.5 | 3UTR | AUGGCACCACUGCACUCCAGCCUGGGUGACAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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