pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF347   
Synonyms ZNF1111
Description zinc finger protein 347
Transcript NM_001172674   
Other Transcripts NM_001172675 , NM_032584   
Expression
Putative miRNA Targets on ZNF347
3'UTR of ZNF347
(miRNA target sites are highlighted)
>ZNF347|NM_001172674|3'UTR
   1 TGGAGAGAAACCTTACAAATGAAGGTGGTAACTTTTGCAGTTAGAATTCATTCCTTTGACAACGTCAGAGAATTTATGCC
  81 TGAGAGATTCCTTGAAAATGCAATGACTGGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGTCCGAGG
 161 CAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGCGAAACCCCATTTCTACTAAAAGTACACAA
 241 TTAGCTAGGCCTGGTGGCGTGCGCCTGTAATCCCAGCTATATAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGG
 321 CGGAGGTTGCAGTGAGCCAAGATCGTGCCAATGCACTCCATCCTGGGCAAAAAGAGCAAAACTCCATCTTAAAGGAAAAA
 401 AAAAAAATGCAATGACTGTGGCAAACTCCTCATGAGTTCAAGTATTAATAGACATCCAAGAGTCCATAATAATGAGAAAT
 481 CACATAAATGTACTGTGTGTGACAGAGGCTTTATTCAGGCCTCACAGCTTTGCAGGCATTAAAATCTACGTATTTGATGG
 561 AACCACACAAATGTAATGTGTAAGAGCATCCTGAAGCTCTTACTCTAAGACTGTAACTGTAGGTGAGGATTCATACAAAG
 641 AGTGACTCAGTCTCTAGTTCTTTGATTCACTTTTAAAATGATAAACTGCACAATAATTACACGTTCCAATATGGTAAAAC
 721 TTAAGACATTATATATTTCAAAGGTCAAAGGACATTTGGAAATGGCTACTTACCTTCAGGTTATAAAATCTTTTATTCCA
 801 TTGTTTGAGGTTTCTCAAAAAGGCTACTGTTTGTGACTTTCAACCTGAACTATGGATCTGTGGCTATTTTGCATCCTTAA
 881 GCACCTTTCGTGGTGCCTATCTGGGAAAGAACCACAGTATGGAAAGGCTTACTTCATTACATGAGGATCATTTTTATCCA
 961 TGTTTATTGAAGAAGGAGGACTCTGCCTTGTAAAATTAAATATTCTCTCAATTGAGAGACCATGGTTTTGGGGCAGAAAA
1041 TAATGTAAAACTATGATATCAATCATCATACTGATTGTGTTCAGGGTGCTTTTCTGAGAGAAAGACACCATGGGTTTTAG
1121 GGAAGTAAGGCTCTACCTGCATTGAGCAGGCCAAGACCTCAGGACACTGGAATTTTTATGAGAGGAGAGTAATAAGTTAT
1201 TAGTGACTGATTATGTGATGGGAATAGTGCAGGGGAAATGGTTGCCACTTTCTCTACTGAATGGCAATAGCTGTTTTATA
1281 GCAGAGATTGATGAAAAATAGGCTTATTTTTGAAATTGAAGAGGTAACAGTTATTAGAGTGGAGAGCTTGGTCAGAAAAA
1361 CCAGAATACCATGGTTTTTTTTGTTTTGTTTTGTTTTTAGTAGAATTCACACTAATTGCTGGAATTACATTTTGCTACAG
1441 TTTTATTAAGAATGTGTCACAGACATAATGTTTTGCTAAAAAAAATTCAACGTTTTCTTATAACTATAAACAAATCACAT
1521 TCTTTGTACCAACATCATTTTATCCTACCTCAGTAGGATACTTCATAGCAGATAATAACAATACACTCAGTCTTTTAGGT
1601 TGGAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuUAGGGU--AGGGGUCCUUGGGg 5'
            ||||||   |::::|||::|| 
Target 5' taATCCCAACACTTTGGGAGTCCg 3'
134 - 157 134.00 -21.30
2
miRNA  3' uuUAGG-GUAGGGGU--CCUUGGgg 5'
            |||: |:| ::::  ||||||  
Target 5' aaATCTACGTATTTGATGGAACCac 3'
542 - 566 130.00 -13.00
3
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' gcaggagaatcacttGAACCCa 3'
294 - 315 120.00 -12.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31497001 3 COSMIC
COSN30492422 10 COSMIC
COSN31505059 50 COSMIC
COSN31596476 52 COSMIC
COSN31561000 54 COSMIC
COSN30586433 62 COSMIC
COSN6669515 64 COSMIC
COSN31508225 70 COSMIC
COSN30470998 89 COSMIC
COSN31553198 124 COSMIC
COSN31597897 125 COSMIC
COSN30170068 131 COSMIC
COSN30531682 143 COSMIC
COSN5761835 178 COSMIC
COSN27027507 211 COSMIC
COSN6146978 236 COSMIC
COSN23039485 396 COSMIC
COSN1771434 456 COSMIC
COSN29192592 457 COSMIC
COSN17182089 633 COSMIC
COSN24541947 694 COSMIC
COSN29241325 946 COSMIC
COSN21245974 975 COSMIC
COSN25840774 1046 COSMIC
COSN1771433 1345 COSMIC
COSN6669514 1437 COSMIC
COSN9226848 1951 COSMIC
COSN26200894 1984 COSMIC
COSN26492321 2172 COSMIC
COSN22274482 2177 COSMIC
COSN22207552 2303 COSMIC
COSN1771431 2519 COSMIC
COSN29456117 2536 COSMIC
COSN15955452 2719 COSMIC
COSN20592208 2721 COSMIC
COSN17464865 3032 COSMIC
COSN15367889 3092 COSMIC
COSN29739284 3208 COSMIC
COSN9852101 3380 COSMIC
COSN20590052 3499 COSMIC
COSN5439279 3929 COSMIC
COSN17756947 4045 COSMIC
COSN6417809 4047 COSMIC
COSN1771429 4331 COSMIC
COSN28068985 4563 COSMIC
COSN24732498 4933 COSMIC
COSN20180952 4964 COSMIC
COSN19370611 4967 COSMIC
COSN18013071 4969 COSMIC
COSN6146976 5200 COSMIC
COSN16130025 5355 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs373759162 1 dbSNP
rs758491895 3 dbSNP
rs569525528 5 dbSNP
rs375080195 12 dbSNP
rs1349326893 13 dbSNP
rs1324284450 16 dbSNP
rs1175696426 22 dbSNP
rs370979636 25 dbSNP
rs754204029 26 dbSNP
rs1416181328 28 dbSNP
rs1334948945 34 dbSNP
rs764547259 35 dbSNP
rs377684035 37 dbSNP
rs776074956 40 dbSNP
rs1473145689 41 dbSNP
rs1341583674 49 dbSNP
rs1412223524 50 dbSNP
rs1223433281 53 dbSNP
rs978766001 60 dbSNP
rs148488520 63 dbSNP
rs1650972 64 dbSNP
rs796100164 65 dbSNP
rs1201624721 81 dbSNP
rs570030118 84 dbSNP
rs965909277 98 dbSNP
rs1214063854 101 dbSNP
rs1265048290 103 dbSNP
rs1020092478 104 dbSNP
rs1010579686 115 dbSNP
rs954839874 116 dbSNP
rs1054760961 125 dbSNP
rs1029376182 126 dbSNP
rs528684274 141 dbSNP
rs551818934 142 dbSNP
rs1199877142 146 dbSNP
rs778660112 154 dbSNP
rs527296967 156 dbSNP
rs1005206572 157 dbSNP
rs559846288 164 dbSNP
rs888400139 167 dbSNP
rs1353977146 175 dbSNP
rs1352419309 176 dbSNP
rs1237505796 180 dbSNP
rs1287638426 183 dbSNP
rs756857653 186 dbSNP
rs753328519 193 dbSNP
rs1208972192 194 dbSNP
rs1265049095 201 dbSNP
rs1305968294 203 dbSNP
rs1444838882 204 dbSNP
rs1012763662 206 dbSNP
rs950099182 210 dbSNP
rs895621858 211 dbSNP
rs557850249 212 dbSNP
rs1332104033 215 dbSNP
rs539845630 217 dbSNP
rs1037172270 220 dbSNP
rs903252028 228 dbSNP
rs1328860900 229 dbSNP
rs941626167 230 dbSNP
rs910159364 233 dbSNP
rs1310849834 235 dbSNP
rs8103167 240 dbSNP
rs1465372535 246 dbSNP
rs1395444233 249 dbSNP
rs562785171 249 dbSNP
rs931671889 254 dbSNP
rs921597338 255 dbSNP
rs947409227 258 dbSNP
rs144629533 259 dbSNP
rs117234352 262 dbSNP
rs933505843 263 dbSNP
rs1181942834 267 dbSNP
rs577083609 274 dbSNP
rs1370561278 276 dbSNP
rs753067683 279 dbSNP
rs1170431361 280 dbSNP
rs1277130003 287 dbSNP
rs1200371754 289 dbSNP
rs923419292 291 dbSNP
rs1332759695 294 dbSNP
rs988684199 295 dbSNP
rs767894821 300 dbSNP
rs1395085213 314 dbSNP
rs1310050101 315 dbSNP
rs1341905182 321 dbSNP
rs759805486 322 dbSNP
rs1257223242 327 dbSNP
rs1032962159 338 dbSNP
rs1200506214 341 dbSNP
rs867085249 344 dbSNP
rs908278727 345 dbSNP
rs984194108 351 dbSNP
rs952379409 353 dbSNP
rs1022899751 355 dbSNP
rs1238311653 380 dbSNP
rs1012814686 382 dbSNP
rs905875025 385 dbSNP
rs559103470 388 dbSNP
rs1353293613 391 dbSNP
rs540684143 394 dbSNP
rs1310212445 395 dbSNP
rs1014305174 396 dbSNP
rs897223031 406 dbSNP
rs1465056852 407 dbSNP
rs1380836566 408 dbSNP
rs879706160 408 dbSNP
rs941566884 408 dbSNP
rs1338718278 410 dbSNP
rs779370437 410 dbSNP
rs1338223930 412 dbSNP
rs1220388638 416 dbSNP
rs888605767 417 dbSNP
rs1311548807 420 dbSNP
rs1208054471 421 dbSNP
rs1257869655 422 dbSNP
rs1483686039 426 dbSNP
rs1216232451 428 dbSNP
rs1050051946 432 dbSNP
rs1478967115 436 dbSNP
rs932852980 440 dbSNP
rs573285262 446 dbSNP
rs368214677 457 dbSNP
rs1425020873 466 dbSNP
rs1431977946 472 dbSNP
rs1184867443 474 dbSNP
rs1360439213 479 dbSNP
rs921607087 490 dbSNP
rs1332181216 494 dbSNP
rs975719169 495 dbSNP
rs944334720 511 dbSNP
rs1289257388 519 dbSNP
rs374310311 521 dbSNP
rs913008649 528 dbSNP
rs1035549693 535 dbSNP
rs554708269 536 dbSNP
rs998688553 546 dbSNP
rs751807028 549 dbSNP
rs1375890025 550 dbSNP
rs1239520045 554 dbSNP
rs1284073003 557 dbSNP
rs113156556 566 dbSNP
rs969918598 567 dbSNP
rs1417587826 573 dbSNP
rs1024277647 577 dbSNP
rs1014233524 580 dbSNP
rs1043109114 582 dbSNP
rs1158726318 591 dbSNP
rs1012001595 596 dbSNP
rs763026640 599 dbSNP
rs1426669999 603 dbSNP
rs1015713024 607 dbSNP
rs773285259 609 dbSNP
rs529408860 612 dbSNP
rs997117330 615 dbSNP
rs901446357 618 dbSNP
rs749893549 621 dbSNP
rs760658452 627 dbSNP
rs1371627522 628 dbSNP
rs923512570 636 dbSNP
rs1214955109 649 dbSNP
rs1307140556 652 dbSNP
rs1356162751 653 dbSNP
rs984871 661 dbSNP
rs1289633131 664 dbSNP
rs940829458 665 dbSNP
rs944387190 669 dbSNP
rs1224230813 671 dbSNP
rs908297298 675 dbSNP
rs1247860934 677 dbSNP
rs912884967 678 dbSNP
rs1457690945 680 dbSNP
rs1177508686 681 dbSNP
rs1052875273 683 dbSNP
rs138835692 691 dbSNP
rs1441180999 692 dbSNP
rs952501685 700 dbSNP
rs1225671045 702 dbSNP
rs538866105 703 dbSNP
rs1166626370 712 dbSNP
rs1395182135 713 dbSNP
rs1465002417 728 dbSNP
rs1329422006 731 dbSNP
rs991138409 733 dbSNP
rs1443210028 736 dbSNP
rs181920891 739 dbSNP
rs1377229866 743 dbSNP
rs1230434461 746 dbSNP
rs771922164 748 dbSNP
rs1283649813 758 dbSNP
rs1317867874 762 dbSNP
rs1197243907 764 dbSNP
rs1245549633 773 dbSNP
rs1181894384 789 dbSNP
rs1356044819 789 dbSNP
rs959977075 790 dbSNP
rs1471589546 791 dbSNP
rs1183414211 793 dbSNP
rs1397924587 800 dbSNP
rs1477462920 805 dbSNP
rs1168366464 807 dbSNP
rs761306798 808 dbSNP
rs917194242 810 dbSNP
rs1333563702 811 dbSNP
rs1359644258 816 dbSNP
rs1450414964 829 dbSNP
rs531130322 832 dbSNP
rs1217182661 844 dbSNP
rs548642625 845 dbSNP
rs1402050846 849 dbSNP
rs10425073 853 dbSNP
rs1195915892 856 dbSNP
rs145952994 860 dbSNP
rs547910515 862 dbSNP
rs952880407 873 dbSNP
rs1212506024 875 dbSNP
rs1475228133 886 dbSNP
rs1477411496 888 dbSNP
rs1420658253 893 dbSNP
rs1028511826 899 dbSNP
rs1475681677 901 dbSNP
rs1172096753 905 dbSNP
rs1022141957 909 dbSNP
rs368843034 917 dbSNP
rs1313637598 927 dbSNP
rs1360122760 931 dbSNP
rs143153672 933 dbSNP
rs1213119558 935 dbSNP
rs1300407853 936 dbSNP
rs889181208 942 dbSNP
rs1041357904 945 dbSNP
rs1273747057 949 dbSNP
rs774151542 955 dbSNP
rs1235844212 957 dbSNP
rs1330129328 960 dbSNP
rs1280671149 975 dbSNP
rs1218269991 976 dbSNP
rs562662494 987 dbSNP
rs1053169268 1001 dbSNP
rs138792344 1002 dbSNP
rs748862173 1004 dbSNP
rs10425366 1009 dbSNP
rs940868801 1012 dbSNP
rs1479083611 1014 dbSNP
rs1044112447 1018 dbSNP
rs1295112937 1022 dbSNP
rs887926554 1030 dbSNP
rs1160849267 1035 dbSNP
rs1339636627 1041 dbSNP
rs1386711154 1046 dbSNP
rs373707946 1053 dbSNP
rs76816634 1059 dbSNP
rs931078196 1060 dbSNP
rs1442527409 1062 dbSNP
rs992709002 1085 dbSNP
rs1352567278 1093 dbSNP
rs915655159 1097 dbSNP
rs991190566 1100 dbSNP
rs865801899 1101 dbSNP
rs1322396500 1103 dbSNP
rs938287202 1105 dbSNP
rs1262280740 1106 dbSNP
rs1351037518 1110 dbSNP
rs867893618 1119 dbSNP
rs1209012553 1142 dbSNP
rs189058713 1148 dbSNP
rs1396017431 1158 dbSNP
rs1194377126 1161 dbSNP
rs1237594848 1163 dbSNP
rs1169250183 1166 dbSNP
rs1184171287 1168 dbSNP
rs762787726 1174 dbSNP
rs908556625 1185 dbSNP
rs984507842 1187 dbSNP
rs1420783889 1188 dbSNP
rs1462388557 1189 dbSNP
rs370257235 1192 dbSNP
rs1326018930 1200 dbSNP
rs967636677 1202 dbSNP
rs1188689642 1203 dbSNP
rs1444124255 1209 dbSNP
rs1477205845 1211 dbSNP
rs1308777740 1222 dbSNP
rs1246360001 1229 dbSNP
rs1335963395 1232 dbSNP
rs1194487524 1237 dbSNP
rs186124754 1240 dbSNP
rs1336890095 1241 dbSNP
rs952727905 1247 dbSNP
rs1028442587 1266 dbSNP
rs1456553760 1270 dbSNP
rs1256200036 1273 dbSNP
rs1196723512 1275 dbSNP
rs150201105 1278 dbSNP
rs1423433134 1286 dbSNP
rs1185904640 1292 dbSNP
rs561414202 1299 dbSNP
rs965536615 1300 dbSNP
rs1475826384 1301 dbSNP
rs551067700 1316 dbSNP
rs1216118070 1318 dbSNP
rs1460074678 1323 dbSNP
rs1299357683 1324 dbSNP
rs1019759659 1326 dbSNP
rs1395044522 1331 dbSNP
rs1365159134 1333 dbSNP
rs1009833756 1336 dbSNP
rs181036256 1337 dbSNP
rs892687827 1342 dbSNP
rs1277554507 1349 dbSNP
rs112875957 1351 dbSNP
rs1206763880 1352 dbSNP
rs1251921456 1363 dbSNP
rs1328713129 1364 dbSNP
rs10425714 1371 dbSNP
rs901822289 1374 dbSNP
rs540593647 1378 dbSNP
rs1486239454 1383 dbSNP
rs904181605 1383 dbSNP
rs1015608879 1385 dbSNP
rs368290386 1398 dbSNP
rs775612300 1398 dbSNP
rs948435719 1398 dbSNP
rs1171934543 1404 dbSNP
rs895662917 1406 dbSNP
rs1005157463 1420 dbSNP
rs1465239680 1437 dbSNP
rs151027446 1438 dbSNP
rs1173092575 1441 dbSNP
rs1413174204 1445 dbSNP
rs888011847 1445 dbSNP
rs1310771346 1450 dbSNP
rs1376882446 1453 dbSNP
rs1424892898 1454 dbSNP
rs577912186 1456 dbSNP
rs939974710 1459 dbSNP
rs908480383 1460 dbSNP
rs1296398287 1461 dbSNP
rs1372363604 1464 dbSNP
rs948197705 1465 dbSNP
rs10425487 1468 dbSNP
rs1231153543 1468 dbSNP
rs1348840523 1475 dbSNP
rs1055346 1477 dbSNP
rs921224866 1484 dbSNP
rs975501335 1485 dbSNP
rs1019811018 1486 dbSNP
rs1055349 1486 dbSNP
rs201707314 1488 dbSNP
rs1171175609 1490 dbSNP
rs988738108 1491 dbSNP
rs1434907010 1492 dbSNP
rs1157848526 1504 dbSNP
rs755370847 1506 dbSNP
rs1233404822 1512 dbSNP
rs1432810691 1519 dbSNP
rs189837712 1520 dbSNP
rs1438861335 1522 dbSNP
rs1305675855 1526 dbSNP
rs780481609 1541 dbSNP
rs1239624613 1556 dbSNP
rs535885492 1558 dbSNP
rs1033042182 1561 dbSNP
rs1279305571 1570 dbSNP
rs573851318 1572 dbSNP
rs879378876 1573 dbSNP
rs1216939620 1574 dbSNP
rs561879591 1576 dbSNP
rs914467509 1581 dbSNP
rs1191239633 1585 dbSNP
rs76563190 1598 dbSNP
rs1022552987 1599 dbSNP
rs989981546 1600 dbSNP
rs1454457341 1602 dbSNP
rs1390326743 1605 dbSNP
rs953177027 1610 dbSNP
rs1405335295 1616 dbSNP
rs568823847 1618 dbSNP
rs184279245 1626 dbSNP
rs1056866432 1628 dbSNP
rs1328025131 1628 dbSNP
rs748785148 1628 dbSNP
rs532490574 1629 dbSNP
rs1446417328 1632 dbSNP
rs1375273695 1634 dbSNP
rs886941839 1643 dbSNP
rs966506777 1644 dbSNP
rs1278061598 1648 dbSNP
rs1661933 1659 dbSNP
rs1312407044 1663 dbSNP
rs931210706 1667 dbSNP
rs1436930857 1671 dbSNP
rs546846289 1672 dbSNP
rs1468583298 1673 dbSNP
rs1197440366 1677 dbSNP
rs1158218748 1679 dbSNP
rs1230868440 1682 dbSNP
rs866365558 1685 dbSNP
rs1470939904 1688 dbSNP
rs1177596607 1689 dbSNP
rs944001766 1690 dbSNP
rs952366468 1692 dbSNP
rs1028281569 1693 dbSNP
rs1012426847 1704 dbSNP
rs895289572 1707 dbSNP
rs1410247725 1710 dbSNP
rs1167104600 1717 dbSNP
rs1395110994 1720 dbSNP
rs1178921263 1727 dbSNP
rs1326903185 1727 dbSNP
rs1356528471 1737 dbSNP
rs528263668 1742 dbSNP
rs1443139772 1743 dbSNP
rs1482224951 1745 dbSNP
rs912679914 1750 dbSNP
rs1256666757 1755 dbSNP
rs1235524847 1757 dbSNP
rs1294496322 1759 dbSNP
rs1055572669 1761 dbSNP
rs558275942 1764 dbSNP
rs1270220258 1765 dbSNP
rs1439211604 1771 dbSNP
rs1204699939 1775 dbSNP
rs1002649715 1779 dbSNP
rs980100439 1804 dbSNP
rs75473399 1824 dbSNP
rs1022606308 1827 dbSNP
rs906936496 1829 dbSNP
rs747259411 1834 dbSNP
rs1012563274 1838 dbSNP
rs1308491317 1839 dbSNP
rs959688680 1840 dbSNP
rs1035885354 1847 dbSNP
rs1333834565 1850 dbSNP
rs1373850692 1850 dbSNP
rs1003925169 1862 dbSNP
rs1041417222 1871 dbSNP
rs1417026131 1874 dbSNP
rs1429171806 1879 dbSNP
rs1267904820 1881 dbSNP
rs561243263 1882 dbSNP
rs1340951102 1885 dbSNP
rs1214636009 1891 dbSNP
rs1279223987 1893 dbSNP
rs945700538 1900 dbSNP
rs1345255507 1905 dbSNP
rs1212796553 1910 dbSNP
rs543069543 1912 dbSNP
rs1359008766 1913 dbSNP
rs1446368751 1922 dbSNP
rs761748445 1924 dbSNP
rs1288583783 1928 dbSNP
rs914499310 1942 dbSNP
rs775529201 1944 dbSNP
rs1243771558 1949 dbSNP
rs1365661030 1950 dbSNP
rs767495170 1951 dbSNP
rs1054270799 1952 dbSNP
rs1360219190 1952 dbSNP
rs1436773619 1952 dbSNP
rs1399320546 1954 dbSNP
rs1417092733 1955 dbSNP
rs575549577 1958 dbSNP
rs1327514128 1962 dbSNP
rs1430878198 1975 dbSNP
rs1476101170 1983 dbSNP
rs931833455 1985 dbSNP
rs1302015261 1999 dbSNP
rs539437845 2016 dbSNP
rs921791345 2017 dbSNP
rs1486002674 2018 dbSNP
rs772367548 2024 dbSNP
rs1262081477 2029 dbSNP
rs1203146846 2033 dbSNP
rs1286314932 2034 dbSNP
rs759413664 2038 dbSNP
rs1193117704 2042 dbSNP
rs1251162526 2048 dbSNP
rs572416109 2050 dbSNP
rs1218750699 2052 dbSNP
rs748480998 2055 dbSNP
rs944054130 2057 dbSNP
rs1452151443 2062 dbSNP
rs1160626441 2068 dbSNP
rs1386353255 2082 dbSNP
rs7247207 2085 dbSNP
rs544990216 2086 dbSNP
rs1295282237 2088 dbSNP
rs577949824 2105 dbSNP
rs1383082565 2106 dbSNP
rs1442456643 2108 dbSNP
rs532447505 2111 dbSNP
rs1334782755 2113 dbSNP
rs10405861 2125 dbSNP
rs1461038311 2127 dbSNP
rs1351334002 2128 dbSNP
rs925457379 2129 dbSNP
rs1165614140 2130 dbSNP
rs576605407 2131 dbSNP
rs541286843 2132 dbSNP
rs1192242127 2133 dbSNP
rs1250133017 2139 dbSNP
rs189141953 2147 dbSNP
rs1184454519 2151 dbSNP
rs1012482479 2153 dbSNP
rs1475171392 2155 dbSNP
rs1420634720 2161 dbSNP
rs916862511 2161 dbSNP
rs1325956770 2162 dbSNP
rs992365680 2166 dbSNP
rs140691829 2169 dbSNP
rs1035217924 2170 dbSNP
rs748915636 2181 dbSNP
rs1273241118 2183 dbSNP
rs1336201516 2183 dbSNP
rs1291420340 2184 dbSNP
rs749948593 2185 dbSNP
rs1336821566 2186 dbSNP
rs377261236 2188 dbSNP
rs1004382031 2190 dbSNP
rs951138623 2200 dbSNP
rs1251207311 2205 dbSNP
rs1027131525 2219 dbSNP
rs1485582389 2221 dbSNP
rs184812020 2224 dbSNP
rs1251643103 2226 dbSNP
rs899660421 2238 dbSNP
rs906991185 2241 dbSNP
rs149604576 2242 dbSNP
rs1008109100 2243 dbSNP
rs561996433 2248 dbSNP
rs892769680 2250 dbSNP
rs549947721 2254 dbSNP
rs546842269 2255 dbSNP
rs1465393461 2261 dbSNP
rs931928353 2265 dbSNP
rs935434459 2269 dbSNP
rs925415508 2277 dbSNP
rs921843568 2279 dbSNP
rs1040221569 2280 dbSNP
rs944496663 2281 dbSNP
rs1464093048 2282 dbSNP
rs907959176 2293 dbSNP
rs1229683721 2300 dbSNP
rs528287032 2303 dbSNP
rs1394253425 2311 dbSNP
rs1167198867 2326 dbSNP
rs747574386 2328 dbSNP
rs1374581640 2335 dbSNP
rs143788702 2337 dbSNP
rs1186374824 2344 dbSNP
rs1486290977 2344 dbSNP
rs960914188 2344 dbSNP
rs556670730 2346 dbSNP
rs1194662692 2348 dbSNP
rs928306278 2351 dbSNP
rs548900137 2361 dbSNP
rs531072549 2362 dbSNP
rs193259208 2364 dbSNP
rs990808047 2365 dbSNP
rs755420055 2366 dbSNP
rs545026642 2372 dbSNP
rs1813428 2377 dbSNP
rs373273101 2385 dbSNP
rs1384034312 2386 dbSNP
rs1196879650 2389 dbSNP
rs963875597 2397 dbSNP
rs780393302 2408 dbSNP
rs559634580 2411 dbSNP
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rs942553367 5069 dbSNP
rs889639256 5071 dbSNP
rs1268376568 5077 dbSNP
rs1446543089 5082 dbSNP
rs1215244676 5087 dbSNP
rs1050934658 5090 dbSNP
rs934103281 5092 dbSNP
rs1210620007 5096 dbSNP
rs918676479 5097 dbSNP
rs1263951763 5099 dbSNP
rs1446815611 5101 dbSNP
rs972730526 5104 dbSNP
rs993354728 5113 dbSNP
rs941309752 5115 dbSNP
rs897624903 5122 dbSNP
rs1191122915 5127 dbSNP
rs1428065766 5138 dbSNP
rs1479157711 5142 dbSNP
rs1037662221 5148 dbSNP
rs1406306448 5152 dbSNP
rs1271127296 5166 dbSNP
rs1471378110 5166 dbSNP
rs1315877566 5168 dbSNP
rs1346740567 5172 dbSNP
rs754012744 5173 dbSNP
rs889150860 5174 dbSNP
rs1285632976 5179 dbSNP
rs980326534 5185 dbSNP
rs1350149101 5191 dbSNP
rs1222431549 5192 dbSNP
rs1286868102 5195 dbSNP
rs970317100 5196 dbSNP
rs1024924727 5205 dbSNP
rs1436561957 5211 dbSNP
rs1489656380 5211 dbSNP
rs1200901620 5214 dbSNP
rs1429572409 5223 dbSNP
rs993005460 5224 dbSNP
rs1156432005 5227 dbSNP
rs1392936522 5239 dbSNP
rs1409952060 5240 dbSNP
rs960779201 5249 dbSNP
rs10408257 5261 dbSNP
rs999159947 5266 dbSNP
rs1406856998 5267 dbSNP
rs1303769688 5268 dbSNP
rs1416371415 5270 dbSNP
rs79011785 5271 dbSNP
rs914739447 5276 dbSNP
rs1281472177 5282 dbSNP
rs1390979194 5285 dbSNP
rs755012217 5286 dbSNP
rs1007245252 5293 dbSNP
rs889702299 5307 dbSNP
rs1051408210 5309 dbSNP
rs1251132676 5310 dbSNP
rs1220695577 5315 dbSNP
rs997988429 5318 dbSNP
rs1223871432 5321 dbSNP
rs897240548 5326 dbSNP
rs370408742 5328 dbSNP
rs1179271306 5342 dbSNP
rs1212545529 5346 dbSNP
rs1234212241 5347 dbSNP
rs571026353 5353 dbSNP
rs1026351137 5355 dbSNP
rs1440099774 5360 dbSNP
rs1162627999 5361 dbSNP
rs1037091356 5363 dbSNP
rs1297801327 5365 dbSNP
rs1426549340 5369 dbSNP
rs1164121080 5371 dbSNP
rs1395929508 5372 dbSNP
rs1230050664 5374 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000334197.7 | 3UTR | UAUAUAGGAGGCUGAGGCAGGAGAAUCACUUGAACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000334197.7 | 3UTR | AUAGGAGGCUGAGGCAGGAGAAUCACUUGAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000334197.7 | 3UTR | UAUAGGAGGCUGAGGCAGGAGAAUCACUUGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE15076 Monocyte-derived dendritic cells -0.97 7.5e-6 -0.683 2.1e-2 9 Click to see details
GSE21032 Prostate cancer -0.237 1.5e-2 -0.229 1.9e-2 83 Click to see details
GSE21687 Ependynoma primary tumors -0.2 5.7e-2 -0.138 1.4e-1 64 Click to see details
GSE38226 Liver fibrosis 0.335 6.9e-2 0.539 5.8e-3 21 Click to see details
GSE28260 Renal cortex and medulla 0.391 9.3e-2 0.495 4.3e-2 13 Click to see details
GSE28544 Breast cancer 0.267 1.0e-1 0.342 5.1e-2 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.252 1.1e-1 0.152 2.3e-1 25 Click to see details
GSE19350 CNS germ cell tumors 0.373 1.2e-1 0.386 1.1e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells -0.202 1.7e-1 -0.116 2.9e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells 0.148 2.5e-1 -0.138 2.7e-1 23 Click to see details
GSE19783 ER- ER- breast cancer -0.055 3.2e-1 -0.041 3.6e-1 79 Click to see details
GSE19783 ER+ ER+ breast cancer -0.076 3.8e-1 0.018 4.7e-1 20 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.057 3.9e-1 0.153 2.3e-1 25 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.058 4.0e-1 0.195 2.1e-1 20 Click to see details
GSE19536 Breast cancer -0.014 4.5e-1 0.009 4.6e-1 100 Click to see details
GSE32688 Pancreatic cancer 0.024 4.5e-1 0.166 1.8e-1 32 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.375 0 -0.356 0 78 Click to see details
KIRC -0.317 0.01 -0.307 0.01 62 Click to see details
PRAD 0.516 0.01 0.467 0.02 19 Click to see details
KICH -0.498 0.01 -0.296 0.1 20 Click to see details
UCEC 0.384 0.05 0.282 0.12 19 Click to see details
STAD -0.267 0.08 -0.259 0.09 28 Click to see details
BLCA -0.233 0.19 -0.453 0.04 16 Click to see details
LUAD -0.329 0.19 -0.300 0.22 9 Click to see details
THCA 0.11 0.2 0.177 0.09 59 Click to see details
PAAD -0.438 0.28 -0.600 0.2 4 Click to see details
ESCA -0.191 0.29 -0.155 0.32 11 Click to see details
PCPG -0.504 0.33 -0.500 0.33 3 Click to see details
LUSC 0.072 0.33 0.175 0.15 38 Click to see details
KIRP 0.067 0.36 0.078 0.34 32 Click to see details
LIHC -0.047 0.39 -0.110 0.26 38 Click to see details
HNSC -0.024 0.44 0.096 0.28 40 Click to see details
COAD -0.052 0.45 -0.286 0.25 8 Click to see details
CESC -0.061 0.48 0.500 0.33 3 Click to see details
CHOL -0.013 0.49 0.143 0.37 8 Click to see details
CHOL -0.013 0.49 0.143 0.37 8 Click to see details
CHOL -0.013 0.49 0.143 0.37 8 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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