pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ABHD17B   
Synonyms C9orf77, CGI-67, FAM108B1
Description abhydrolase domain containing 17B
Transcript NM_001025780   
Other Transcripts NM_016014   
Expression
Putative miRNA Targets on ABHD17B
3'UTR of ABHD17B
(miRNA target sites are highlighted)
>ABHD17B|NM_001025780|3'UTR
   1 AATATTCTGTAAATTTGCTACTGGGTTTTCCTTTCTTGCTGAACTGCACTCTTTGGTAAATAACATAAAACCTGAAGGTT
  81 TTGTTTGCAAATCATGTCAGTTGCCTTCATAAATGTACAGGTAATGATTTGTTAACAGACTTAATGAAGGTTTTAATTAC
 161 CAGAACTAAAAACTGGAAATAACAGTACCGTGCAGTCAGGCTGTGTAATTTATATTTTTTCTGTGAATTTTTTTTTAACA
 241 TCAAGATGAGTACTGTATGAGATTTTAATTCTATAAAATCAAATGCTGTAAAAGTATTGCCAAATGCTTTTGCATACTAG
 321 AAACAAATTTATAAATATTTTTAAAACATCTCAATATATTAAATCTTATCCTGGAATACAACTGTAATATTTTGAAAAAA
 401 GCTATGTATCTAAAGCAATTTAAGTACTCATAATGGAATGAACTGTAAAAGAGATTTAAAACCATGCAAGTTCACTAGAA
 481 TTAACCTAAACCCTGTTGTACAGGGATAGAGGTTTAAAGTTATTTTATTGTAAAATACATTGAATTTTCTGTATACTCTG
 561 ATTACATACATTTATCCTTTAAAAAAGATGTAAATCTTAATTTTTATGCCATCTATTAATTTACCAATGAGTTACCTTGT
 641 AAATGAGAAGTCATGATAGCACTGAATTTTAACTAGTTTTGACTTCTAAGTTTGGTACTGTGAGGCAAGTACTTAAAATT
 721 TTCATGCTGGTTACTTAAAAGGCATTTAGAGATTTCAAGAATGATTTTGTATACGATGTTTTAAATTTTGACTGATCTCA
 801 TAGTCTTCATAGAATTGCAGTAGTCTTCATTGTATGAAATCCCGAAAGTCCATGAGTTGATCTTAAAGACCACTAACAGA
 881 CTGGCTATCAGATCCCTTTTCACTTTGGCTATTTTTTTCATTTTTTGAGATGGAGTCTTGCTGTGTCACTGAGGCTGGAG
 961 TGCAGTGGCGCGATCTTGACTCACTGCAACCTCTGCCTCCCGGGATCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGC
1041 TGGTATTACAGATGCTTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGATCAGG
1121 CTGGTCTTGAACTCCTGACCTCATGATCTGCCCTTGGCCTCCCAAAGTGTCGGAATTACAGGCATGAGCCACTGCGCCTG
1201 GCCCACTTTAGCTATTTTTAAAAATAGGACCTATTGTTTTGGATTACTATCTGAGAATTTCATGGATTCACTCCTGGGTA
1281 TAGGAGATAAGAATACGTTTAATTCATAACTTTTATATTAACCAATATAGTAAAAAAATAAAGCTCACACATACAAAAAC
1361 TAAGTTGCCTTTCCTTGAATGAACCCTGTCTGAATAAAACAATGAAAAATAAAAATAAAATTAATGGTATGTAGTCTAAT
1441 TTGTAAATGAATGAATATGGAAATAATACACACTGTGGATATATTTTAAGGCCTTATGTAGTTTTAATTGTTCTGCTCGT
1521 TCCGTGGTTATGTTTAAGACTATAGTATATGACTCTCTTCAAAGTATATCAAGTATTGTGAATGCTTTGGTTCAGATGTG
1601 TCAAATTAACAGTAAAACAACAAATATACCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1681 AAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucuccgucCAAGGACCUAGUa 5'
                  ||| :|||||:| 
Target 5' gacctattGTT-TTGGATTAc 3'
1228 - 1247 132.00 -7.70
2
miRNA  3' ucUCCGUCC---AA-GG---ACCUAGUa 5'
            || ||||   || ||   | ||||| 
Target 5' agAGACAGGGTTTTGCCATGTTGATCAg 3'
1092 - 1119 123.00 -15.00
3
miRNA  3' ucuccguccaaggaCCUAGUa 5'
                        |||||| 
Target 5' acctctgcctcccgGGATCAa 3'
989 - 1009 120.00 -10.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14397248 7 COSMIC
COSN30151772 23 COSMIC
COSN1380786 40 COSMIC
COSN30147791 55 COSMIC
COSN30156240 68 COSMIC
COSN26392400 189 COSMIC
COSN26636902 201 COSMIC
COSN31572766 227 COSMIC
COSN31584015 227 COSMIC
COSN31519354 261 COSMIC
COSN31548324 365 COSMIC
COSN31490778 374 COSMIC
COSN31594661 389 COSMIC
COSN26637536 462 COSMIC
COSN9318671 466 COSMIC
COSN31547536 525 COSMIC
COSN31606747 532 COSMIC
COSN6393106 552 COSMIC
COSN31523563 563 COSMIC
COSN31547534 577 COSMIC
COSN31482503 580 COSMIC
COSN32213292 645 COSMIC
COSN31567928 659 COSMIC
COSN21058485 758 COSMIC
COSN32056877 790 COSMIC
COSN29491586 1220 COSMIC
COSN2326152 1249 COSMIC
COSN30174584 1373 COSMIC
COSN31582896 1513 COSMIC
COSN21198170 1539 COSMIC
COSN30174569 1602 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1222330330 4 dbSNP
rs1390014631 6 dbSNP
rs1307020195 8 dbSNP
rs1271102081 11 dbSNP
rs755653161 20 dbSNP
rs879701112 21 dbSNP
rs1303108326 22 dbSNP
rs1459040396 41 dbSNP
rs558730000 47 dbSNP
rs1394707024 48 dbSNP
rs1267765663 55 dbSNP
rs1318851832 59 dbSNP
rs975563479 65 dbSNP
rs1205654913 68 dbSNP
rs1277115946 68 dbSNP
rs1442408953 70 dbSNP
rs538706930 71 dbSNP
rs912643551 72 dbSNP
rs181805585 77 dbSNP
rs1471835435 81 dbSNP
rs1179511504 84 dbSNP
rs938422769 90 dbSNP
rs924360419 109 dbSNP
rs1173876545 132 dbSNP
rs1399947555 134 dbSNP
rs1413875657 138 dbSNP
rs977585945 144 dbSNP
rs1404120524 146 dbSNP
rs956815248 150 dbSNP
rs1031385786 167 dbSNP
rs947537207 168 dbSNP
rs574835262 189 dbSNP
rs1225416384 190 dbSNP
rs914783313 200 dbSNP
rs1344888038 204 dbSNP
rs1474846447 208 dbSNP
rs1239993021 212 dbSNP
rs1482246743 216 dbSNP
rs1000884987 223 dbSNP
rs1204902716 224 dbSNP
rs986363639 226 dbSNP
rs1490424905 227 dbSNP
rs968583065 232 dbSNP
rs1030309808 237 dbSNP
rs143605788 237 dbSNP
rs377318532 237 dbSNP
rs369787481 242 dbSNP
rs1391953153 245 dbSNP
rs976082388 250 dbSNP
rs1307247334 255 dbSNP
rs1366402897 259 dbSNP
rs1407039562 279 dbSNP
rs1012688141 280 dbSNP
rs1228263700 287 dbSNP
rs1272367113 302 dbSNP
rs1251858026 305 dbSNP
rs1211694442 319 dbSNP
rs962118505 327 dbSNP
rs1362076609 330 dbSNP
rs1015415559 342 dbSNP
rs1264843470 347 dbSNP
rs1213759247 349 dbSNP
rs561389717 353 dbSNP
rs190761324 356 dbSNP
rs1337279334 357 dbSNP
rs1193359425 358 dbSNP
rs779152037 360 dbSNP
rs894344754 369 dbSNP
rs1167696088 373 dbSNP
rs1385591396 376 dbSNP
rs112223614 381 dbSNP
rs537831181 384 dbSNP
rs1371760047 393 dbSNP
rs1161625972 401 dbSNP
rs534669016 401 dbSNP
rs1434857171 404 dbSNP
rs375433645 406 dbSNP
rs1363599262 419 dbSNP
rs1434957924 420 dbSNP
rs1316377258 424 dbSNP
rs1047147358 430 dbSNP
rs1465114338 436 dbSNP
rs1385363479 444 dbSNP
rs1356808187 453 dbSNP
rs931019940 463 dbSNP
rs1263308536 473 dbSNP
rs1355278843 477 dbSNP
rs920164513 497 dbSNP
rs1205182959 511 dbSNP
rs1269520196 523 dbSNP
rs532583842 539 dbSNP
rs767616048 540 dbSNP
rs565029156 547 dbSNP
rs1388755637 549 dbSNP
rs942844167 550 dbSNP
rs894413639 554 dbSNP
rs1425270280 564 dbSNP
rs775285888 605 dbSNP
rs1368088865 606 dbSNP
rs143756117 610 dbSNP
rs1161685378 615 dbSNP
rs531406622 620 dbSNP
rs1456788946 624 dbSNP
rs562420550 627 dbSNP
rs1481361612 629 dbSNP
rs1394639613 639 dbSNP
rs1312523477 647 dbSNP
rs1339478612 649 dbSNP
rs1239266668 674 dbSNP
rs1289859740 675 dbSNP
rs956976473 683 dbSNP
rs924067362 686 dbSNP
rs979822966 688 dbSNP
rs185604239 689 dbSNP
rs1263680127 700 dbSNP
rs1484230128 708 dbSNP
rs1041858034 716 dbSNP
rs1255163434 724 dbSNP
rs778411985 726 dbSNP
rs770534516 730 dbSNP
rs947181018 737 dbSNP
rs1410037283 751 dbSNP
rs1472301696 761 dbSNP
rs1282232316 769 dbSNP
rs914731067 774 dbSNP
rs1465018613 775 dbSNP
rs1302810482 793 dbSNP
rs1021487216 798 dbSNP
rs1012823296 801 dbSNP
rs932198709 805 dbSNP
rs1309399992 813 dbSNP
rs958616601 814 dbSNP
rs1348876475 823 dbSNP
rs923523760 824 dbSNP
rs976394485 832 dbSNP
rs573545876 834 dbSNP
rs1313467107 843 dbSNP
rs192613409 844 dbSNP
rs1255351243 845 dbSNP
rs1480797535 851 dbSNP
rs962350358 853 dbSNP
rs112801047 861 dbSNP
rs572416293 865 dbSNP
rs886842634 885 dbSNP
rs985265261 887 dbSNP
rs1200195838 889 dbSNP
rs1217538536 896 dbSNP
rs952141544 900 dbSNP
rs777357764 905 dbSNP
rs1046842093 908 dbSNP
rs1375707458 910 dbSNP
rs558693025 911 dbSNP
rs377288125 913 dbSNP
rs1306633168 916 dbSNP
rs548875521 919 dbSNP
rs1408792990 927 dbSNP
rs1026750362 930 dbSNP
rs1369021373 952 dbSNP
rs898203618 954 dbSNP
rs1384569346 959 dbSNP
rs774564058 960 dbSNP
rs1342853318 961 dbSNP
rs1230310385 964 dbSNP
rs1272258856 966 dbSNP
rs958584275 969 dbSNP
rs538915215 970 dbSNP
rs538872290 971 dbSNP
rs1487510187 972 dbSNP
rs2030700 980 dbSNP
rs1263033336 982 dbSNP
rs1041412267 989 dbSNP
rs556368711 992 dbSNP
rs2030701 1002 dbSNP
rs912831029 1012 dbSNP
rs1351325430 1013 dbSNP
rs932129717 1013 dbSNP
rs1292485937 1020 dbSNP
rs1188408037 1027 dbSNP
rs1437141945 1031 dbSNP
rs1295344771 1038 dbSNP
rs1364122608 1048 dbSNP
rs1228679283 1055 dbSNP
rs755275458 1062 dbSNP
rs41287391 1065 dbSNP
rs187603844 1066 dbSNP
rs1208337298 1067 dbSNP
rs1220907041 1070 dbSNP
rs57767774 1071 dbSNP
rs1285079332 1072 dbSNP
rs1187158118 1076 dbSNP
rs1223651786 1077 dbSNP
rs1445613396 1078 dbSNP
rs1184019926 1081 dbSNP
rs979572373 1098 dbSNP
rs984826116 1100 dbSNP
rs1388664234 1102 dbSNP
rs1458372261 1106 dbSNP
rs1318383952 1109 dbSNP
rs916673086 1114 dbSNP
rs1285788825 1124 dbSNP
rs946714381 1128 dbSNP
rs1227903448 1129 dbSNP
rs916540508 1131 dbSNP
rs766503811 1135 dbSNP
rs1035555233 1138 dbSNP
rs1349187119 1150 dbSNP
rs1003190648 1159 dbSNP
rs145307925 1161 dbSNP
rs1212646805 1163 dbSNP
rs1236045479 1171 dbSNP
rs1020347847 1172 dbSNP
rs1186710034 1181 dbSNP
rs1412263700 1184 dbSNP
rs1156397799 1191 dbSNP
rs796316208 1195 dbSNP
rs1415015008 1196 dbSNP
rs1336129780 1198 dbSNP
rs1300691149 1200 dbSNP
rs1447017176 1201 dbSNP
rs758580283 1203 dbSNP
rs750517084 1204 dbSNP
rs551726810 1205 dbSNP
rs892840806 1205 dbSNP
rs1287852638 1209 dbSNP
rs1345226899 1210 dbSNP
rs1345843172 1211 dbSNP
rs1025814033 1220 dbSNP
rs1157742346 1225 dbSNP
rs1455523677 1227 dbSNP
rs1442138674 1229 dbSNP
rs1419928446 1230 dbSNP
rs765252189 1231 dbSNP
rs139715879 1233 dbSNP
rs1253880729 1238 dbSNP
rs901999211 1239 dbSNP
rs1040558443 1243 dbSNP
rs1478074744 1248 dbSNP
rs940914715 1249 dbSNP
rs1174178683 1250 dbSNP
rs562741463 1264 dbSNP
rs548802405 1265 dbSNP
rs1169036644 1269 dbSNP
rs528988483 1273 dbSNP
rs41287389 1280 dbSNP
rs1307682762 1287 dbSNP
rs990848060 1296 dbSNP
rs767399177 1297 dbSNP
rs1273577577 1306 dbSNP
rs1344997506 1309 dbSNP
rs1229573150 1315 dbSNP
rs1234492483 1339 dbSNP
rs1334557280 1340 dbSNP
rs147407574 1344 dbSNP
rs1202535780 1346 dbSNP
rs1249382694 1350 dbSNP
rs902717154 1351 dbSNP
rs572378954 1361 dbSNP
rs1244885538 1366 dbSNP
rs981317347 1369 dbSNP
rs946766745 1385 dbSNP
rs916684279 1392 dbSNP
rs1391732717 1400 dbSNP
rs990764395 1403 dbSNP
rs1432262322 1420 dbSNP
rs1396087331 1426 dbSNP
rs939385985 1435 dbSNP
rs774123465 1451 dbSNP
rs1366426107 1453 dbSNP
rs1321726586 1456 dbSNP
rs780947654 1457 dbSNP
rs1020191388 1459 dbSNP
rs191909808 1465 dbSNP
rs957008332 1469 dbSNP
rs1363381999 1470 dbSNP
rs1028692581 1472 dbSNP
rs545330826 1474 dbSNP
rs1420485287 1478 dbSNP
rs547434739 1492 dbSNP
rs1356669323 1496 dbSNP
rs576553869 1497 dbSNP
rs1287079224 1499 dbSNP
rs1463581812 1513 dbSNP
rs1254986304 1518 dbSNP
rs556717799 1523 dbSNP
rs1447430341 1524 dbSNP
rs533660808 1532 dbSNP
rs748919908 1539 dbSNP
rs187448789 1542 dbSNP
rs973916431 1543 dbSNP
rs1263989135 1548 dbSNP
rs1473922027 1552 dbSNP
rs1230056137 1555 dbSNP
rs1161714813 1565 dbSNP
rs371773698 1566 dbSNP
rs1457837076 1568 dbSNP
rs554178712 1572 dbSNP
rs1005057942 1590 dbSNP
rs1387184347 1593 dbSNP
rs886642747 1595 dbSNP
rs1018059453 1596 dbSNP
rs1313949318 1600 dbSNP
rs116404255 1604 dbSNP
rs890829983 1627 dbSNP
rs1282073640 1631 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucuccguccaaggaCCUAGUa 5'
                        |||||| 
Target 5' --------------GGAUCAa 3'
1 - 7
2
miRNA  3' ucuccGUCCA-----AGGACCUAGUA--- 5'
               || ||     |||||  |||    
Target 5' -ggauCAAGUGAUUCUCCUGCCUCAGCCU 3'
1 - 28
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000333421.6 | 3UTR | GGAUCAAGUGAUUCUCCUGCCUCAGCCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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