pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ABHD17B   
Synonyms C9orf77, CGI-67, FAM108B1
Description abhydrolase domain containing 17B
Transcript NM_001025780   
Other Transcripts NM_016014   
Expression
Putative miRNA Targets on ABHD17B
3'UTR of ABHD17B
(miRNA target sites are highlighted)
>ABHD17B|NM_001025780|3'UTR
   1 AATATTCTGTAAATTTGCTACTGGGTTTTCCTTTCTTGCTGAACTGCACTCTTTGGTAAATAACATAAAACCTGAAGGTT
  81 TTGTTTGCAAATCATGTCAGTTGCCTTCATAAATGTACAGGTAATGATTTGTTAACAGACTTAATGAAGGTTTTAATTAC
 161 CAGAACTAAAAACTGGAAATAACAGTACCGTGCAGTCAGGCTGTGTAATTTATATTTTTTCTGTGAATTTTTTTTTAACA
 241 TCAAGATGAGTACTGTATGAGATTTTAATTCTATAAAATCAAATGCTGTAAAAGTATTGCCAAATGCTTTTGCATACTAG
 321 AAACAAATTTATAAATATTTTTAAAACATCTCAATATATTAAATCTTATCCTGGAATACAACTGTAATATTTTGAAAAAA
 401 GCTATGTATCTAAAGCAATTTAAGTACTCATAATGGAATGAACTGTAAAAGAGATTTAAAACCATGCAAGTTCACTAGAA
 481 TTAACCTAAACCCTGTTGTACAGGGATAGAGGTTTAAAGTTATTTTATTGTAAAATACATTGAATTTTCTGTATACTCTG
 561 ATTACATACATTTATCCTTTAAAAAAGATGTAAATCTTAATTTTTATGCCATCTATTAATTTACCAATGAGTTACCTTGT
 641 AAATGAGAAGTCATGATAGCACTGAATTTTAACTAGTTTTGACTTCTAAGTTTGGTACTGTGAGGCAAGTACTTAAAATT
 721 TTCATGCTGGTTACTTAAAAGGCATTTAGAGATTTCAAGAATGATTTTGTATACGATGTTTTAAATTTTGACTGATCTCA
 801 TAGTCTTCATAGAATTGCAGTAGTCTTCATTGTATGAAATCCCGAAAGTCCATGAGTTGATCTTAAAGACCACTAACAGA
 881 CTGGCTATCAGATCCCTTTTCACTTTGGCTATTTTTTTCATTTTTTGAGATGGAGTCTTGCTGTGTCACTGAGGCTGGAG
 961 TGCAGTGGCGCGATCTTGACTCACTGCAACCTCTGCCTCCCGGGATCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGC
1041 TGGTATTACAGATGCTTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGATCAGG
1121 CTGGTCTTGAACTCCTGACCTCATGATCTGCCCTTGGCCTCCCAAAGTGTCGGAATTACAGGCATGAGCCACTGCGCCTG
1201 GCCCACTTTAGCTATTTTTAAAAATAGGACCTATTGTTTTGGATTACTATCTGAGAATTTCATGGATTCACTCCTGGGTA
1281 TAGGAGATAAGAATACGTTTAATTCATAACTTTTATATTAACCAATATAGTAAAAAAATAAAGCTCACACATACAAAAAC
1361 TAAGTTGCCTTTCCTTGAATGAACCCTGTCTGAATAAAACAATGAAAAATAAAAATAAAATTAATGGTATGTAGTCTAAT
1441 TTGTAAATGAATGAATATGGAAATAATACACACTGTGGATATATTTTAAGGCCTTATGTAGTTTTAATTGTTCTGCTCGT
1521 TCCGTGGTTATGTTTAAGACTATAGTATATGACTCTCTTCAAAGTATATCAAGTATTGTGAATGCTTTGGTTCAGATGTG
1601 TCAAATTAACAGTAAAACAACAAATATACCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1681 AAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacAGGGUG--GGGGUGAGGACa 5'
             |::||:   ::|||||||| 
Target 5' gaaTTTCATGGATTCACTCCTGg 3'
1255 - 1277 152.00 -18.20
2
miRNA  3' uaCAGGGUGGGG-GUGAGGACa 5'
            | |: ::|::  ||||||| 
Target 5' caGGCTGGTCTTGAACTCCTGa 3'
1117 - 1138 143.00 -15.50
3
miRNA  3' uacaGGGUGGGGGUGAGGACa 5'
              |:::|| |||| |||| 
Target 5' gatgCTTGCCACCACGCCTGg 3'
1051 - 1071 133.00 -20.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14397248 7 COSMIC
COSN30151772 23 COSMIC
COSN1380786 40 COSMIC
COSN30147791 55 COSMIC
COSN30156240 68 COSMIC
COSN26392400 189 COSMIC
COSN26636902 201 COSMIC
COSN31572766 227 COSMIC
COSN31584015 227 COSMIC
COSN31519354 261 COSMIC
COSN31548324 365 COSMIC
COSN31490778 374 COSMIC
COSN31594661 389 COSMIC
COSN26637536 462 COSMIC
COSN9318671 466 COSMIC
COSN31547536 525 COSMIC
COSN31606747 532 COSMIC
COSN6393106 552 COSMIC
COSN31523563 563 COSMIC
COSN31547534 577 COSMIC
COSN31482503 580 COSMIC
COSN32213292 645 COSMIC
COSN31567928 659 COSMIC
COSN21058485 758 COSMIC
COSN32056877 790 COSMIC
COSN29491586 1220 COSMIC
COSN2326152 1249 COSMIC
COSN30174584 1373 COSMIC
COSN31582896 1513 COSMIC
COSN21198170 1539 COSMIC
COSN30174569 1602 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1222330330 4 dbSNP
rs1390014631 6 dbSNP
rs1307020195 8 dbSNP
rs1271102081 11 dbSNP
rs755653161 20 dbSNP
rs879701112 21 dbSNP
rs1303108326 22 dbSNP
rs1459040396 41 dbSNP
rs558730000 47 dbSNP
rs1394707024 48 dbSNP
rs1267765663 55 dbSNP
rs1318851832 59 dbSNP
rs975563479 65 dbSNP
rs1205654913 68 dbSNP
rs1277115946 68 dbSNP
rs1442408953 70 dbSNP
rs538706930 71 dbSNP
rs912643551 72 dbSNP
rs181805585 77 dbSNP
rs1471835435 81 dbSNP
rs1179511504 84 dbSNP
rs938422769 90 dbSNP
rs924360419 109 dbSNP
rs1173876545 132 dbSNP
rs1399947555 134 dbSNP
rs1413875657 138 dbSNP
rs977585945 144 dbSNP
rs1404120524 146 dbSNP
rs956815248 150 dbSNP
rs1031385786 167 dbSNP
rs947537207 168 dbSNP
rs574835262 189 dbSNP
rs1225416384 190 dbSNP
rs914783313 200 dbSNP
rs1344888038 204 dbSNP
rs1474846447 208 dbSNP
rs1239993021 212 dbSNP
rs1482246743 216 dbSNP
rs1000884987 223 dbSNP
rs1204902716 224 dbSNP
rs986363639 226 dbSNP
rs1490424905 227 dbSNP
rs968583065 232 dbSNP
rs1030309808 237 dbSNP
rs143605788 237 dbSNP
rs377318532 237 dbSNP
rs369787481 242 dbSNP
rs1391953153 245 dbSNP
rs976082388 250 dbSNP
rs1307247334 255 dbSNP
rs1366402897 259 dbSNP
rs1407039562 279 dbSNP
rs1012688141 280 dbSNP
rs1228263700 287 dbSNP
rs1272367113 302 dbSNP
rs1251858026 305 dbSNP
rs1211694442 319 dbSNP
rs962118505 327 dbSNP
rs1362076609 330 dbSNP
rs1015415559 342 dbSNP
rs1264843470 347 dbSNP
rs1213759247 349 dbSNP
rs561389717 353 dbSNP
rs190761324 356 dbSNP
rs1337279334 357 dbSNP
rs1193359425 358 dbSNP
rs779152037 360 dbSNP
rs894344754 369 dbSNP
rs1167696088 373 dbSNP
rs1385591396 376 dbSNP
rs112223614 381 dbSNP
rs537831181 384 dbSNP
rs1371760047 393 dbSNP
rs1161625972 401 dbSNP
rs534669016 401 dbSNP
rs1434857171 404 dbSNP
rs375433645 406 dbSNP
rs1363599262 419 dbSNP
rs1434957924 420 dbSNP
rs1316377258 424 dbSNP
rs1047147358 430 dbSNP
rs1465114338 436 dbSNP
rs1385363479 444 dbSNP
rs1356808187 453 dbSNP
rs931019940 463 dbSNP
rs1263308536 473 dbSNP
rs1355278843 477 dbSNP
rs920164513 497 dbSNP
rs1205182959 511 dbSNP
rs1269520196 523 dbSNP
rs532583842 539 dbSNP
rs767616048 540 dbSNP
rs565029156 547 dbSNP
rs1388755637 549 dbSNP
rs942844167 550 dbSNP
rs894413639 554 dbSNP
rs1425270280 564 dbSNP
rs775285888 605 dbSNP
rs1368088865 606 dbSNP
rs143756117 610 dbSNP
rs1161685378 615 dbSNP
rs531406622 620 dbSNP
rs1456788946 624 dbSNP
rs562420550 627 dbSNP
rs1481361612 629 dbSNP
rs1394639613 639 dbSNP
rs1312523477 647 dbSNP
rs1339478612 649 dbSNP
rs1239266668 674 dbSNP
rs1289859740 675 dbSNP
rs956976473 683 dbSNP
rs924067362 686 dbSNP
rs979822966 688 dbSNP
rs185604239 689 dbSNP
rs1263680127 700 dbSNP
rs1484230128 708 dbSNP
rs1041858034 716 dbSNP
rs1255163434 724 dbSNP
rs778411985 726 dbSNP
rs770534516 730 dbSNP
rs947181018 737 dbSNP
rs1410037283 751 dbSNP
rs1472301696 761 dbSNP
rs1282232316 769 dbSNP
rs914731067 774 dbSNP
rs1465018613 775 dbSNP
rs1302810482 793 dbSNP
rs1021487216 798 dbSNP
rs1012823296 801 dbSNP
rs932198709 805 dbSNP
rs1309399992 813 dbSNP
rs958616601 814 dbSNP
rs1348876475 823 dbSNP
rs923523760 824 dbSNP
rs976394485 832 dbSNP
rs573545876 834 dbSNP
rs1313467107 843 dbSNP
rs192613409 844 dbSNP
rs1255351243 845 dbSNP
rs1480797535 851 dbSNP
rs962350358 853 dbSNP
rs112801047 861 dbSNP
rs572416293 865 dbSNP
rs886842634 885 dbSNP
rs985265261 887 dbSNP
rs1200195838 889 dbSNP
rs1217538536 896 dbSNP
rs952141544 900 dbSNP
rs777357764 905 dbSNP
rs1046842093 908 dbSNP
rs1375707458 910 dbSNP
rs558693025 911 dbSNP
rs377288125 913 dbSNP
rs1306633168 916 dbSNP
rs548875521 919 dbSNP
rs1408792990 927 dbSNP
rs1026750362 930 dbSNP
rs1369021373 952 dbSNP
rs898203618 954 dbSNP
rs1384569346 959 dbSNP
rs774564058 960 dbSNP
rs1342853318 961 dbSNP
rs1230310385 964 dbSNP
rs1272258856 966 dbSNP
rs958584275 969 dbSNP
rs538915215 970 dbSNP
rs538872290 971 dbSNP
rs1487510187 972 dbSNP
rs2030700 980 dbSNP
rs1263033336 982 dbSNP
rs1041412267 989 dbSNP
rs556368711 992 dbSNP
rs2030701 1002 dbSNP
rs912831029 1012 dbSNP
rs1351325430 1013 dbSNP
rs932129717 1013 dbSNP
rs1292485937 1020 dbSNP
rs1188408037 1027 dbSNP
rs1437141945 1031 dbSNP
rs1295344771 1038 dbSNP
rs1364122608 1048 dbSNP
rs1228679283 1055 dbSNP
rs755275458 1062 dbSNP
rs41287391 1065 dbSNP
rs187603844 1066 dbSNP
rs1208337298 1067 dbSNP
rs1220907041 1070 dbSNP
rs57767774 1071 dbSNP
rs1285079332 1072 dbSNP
rs1187158118 1076 dbSNP
rs1223651786 1077 dbSNP
rs1445613396 1078 dbSNP
rs1184019926 1081 dbSNP
rs979572373 1098 dbSNP
rs984826116 1100 dbSNP
rs1388664234 1102 dbSNP
rs1458372261 1106 dbSNP
rs1318383952 1109 dbSNP
rs916673086 1114 dbSNP
rs1285788825 1124 dbSNP
rs946714381 1128 dbSNP
rs1227903448 1129 dbSNP
rs916540508 1131 dbSNP
rs766503811 1135 dbSNP
rs1035555233 1138 dbSNP
rs1349187119 1150 dbSNP
rs1003190648 1159 dbSNP
rs145307925 1161 dbSNP
rs1212646805 1163 dbSNP
rs1236045479 1171 dbSNP
rs1020347847 1172 dbSNP
rs1186710034 1181 dbSNP
rs1412263700 1184 dbSNP
rs1156397799 1191 dbSNP
rs796316208 1195 dbSNP
rs1415015008 1196 dbSNP
rs1336129780 1198 dbSNP
rs1300691149 1200 dbSNP
rs1447017176 1201 dbSNP
rs758580283 1203 dbSNP
rs750517084 1204 dbSNP
rs551726810 1205 dbSNP
rs892840806 1205 dbSNP
rs1287852638 1209 dbSNP
rs1345226899 1210 dbSNP
rs1345843172 1211 dbSNP
rs1025814033 1220 dbSNP
rs1157742346 1225 dbSNP
rs1455523677 1227 dbSNP
rs1442138674 1229 dbSNP
rs1419928446 1230 dbSNP
rs765252189 1231 dbSNP
rs139715879 1233 dbSNP
rs1253880729 1238 dbSNP
rs901999211 1239 dbSNP
rs1040558443 1243 dbSNP
rs1478074744 1248 dbSNP
rs940914715 1249 dbSNP
rs1174178683 1250 dbSNP
rs562741463 1264 dbSNP
rs548802405 1265 dbSNP
rs1169036644 1269 dbSNP
rs528988483 1273 dbSNP
rs41287389 1280 dbSNP
rs1307682762 1287 dbSNP
rs990848060 1296 dbSNP
rs767399177 1297 dbSNP
rs1273577577 1306 dbSNP
rs1344997506 1309 dbSNP
rs1229573150 1315 dbSNP
rs1234492483 1339 dbSNP
rs1334557280 1340 dbSNP
rs147407574 1344 dbSNP
rs1202535780 1346 dbSNP
rs1249382694 1350 dbSNP
rs902717154 1351 dbSNP
rs572378954 1361 dbSNP
rs1244885538 1366 dbSNP
rs981317347 1369 dbSNP
rs946766745 1385 dbSNP
rs916684279 1392 dbSNP
rs1391732717 1400 dbSNP
rs990764395 1403 dbSNP
rs1432262322 1420 dbSNP
rs1396087331 1426 dbSNP
rs939385985 1435 dbSNP
rs774123465 1451 dbSNP
rs1366426107 1453 dbSNP
rs1321726586 1456 dbSNP
rs780947654 1457 dbSNP
rs1020191388 1459 dbSNP
rs191909808 1465 dbSNP
rs957008332 1469 dbSNP
rs1363381999 1470 dbSNP
rs1028692581 1472 dbSNP
rs545330826 1474 dbSNP
rs1420485287 1478 dbSNP
rs547434739 1492 dbSNP
rs1356669323 1496 dbSNP
rs576553869 1497 dbSNP
rs1287079224 1499 dbSNP
rs1463581812 1513 dbSNP
rs1254986304 1518 dbSNP
rs556717799 1523 dbSNP
rs1447430341 1524 dbSNP
rs533660808 1532 dbSNP
rs748919908 1539 dbSNP
rs187448789 1542 dbSNP
rs973916431 1543 dbSNP
rs1263989135 1548 dbSNP
rs1473922027 1552 dbSNP
rs1230056137 1555 dbSNP
rs1161714813 1565 dbSNP
rs371773698 1566 dbSNP
rs1457837076 1568 dbSNP
rs554178712 1572 dbSNP
rs1005057942 1590 dbSNP
rs1387184347 1593 dbSNP
rs886642747 1595 dbSNP
rs1018059453 1596 dbSNP
rs1313949318 1600 dbSNP
rs116404255 1604 dbSNP
rs890829983 1627 dbSNP
rs1282073640 1631 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacaggguggggguGAGGACa 5'
                        |||||| 
Target 5' -ggaucaagugauuCUCCUGc 3'
1 - 20
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000333421.6 | 3UTR | GGAUCAAGUGAUUCUCCUGCCUCAGCCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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