pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TIGD6   
Synonyms -
Description tigger transposable element derived 6
Transcript NM_030953   
Expression
Putative miRNA Targets on TIGD6
3'UTR of TIGD6
(miRNA target sites are highlighted)
>TIGD6|NM_030953|3'UTR
   1 TGCAGGAATTTATTTCAGAAAATGTAGTTTACAAGAATAAAGATTTCTTTAGATAGGTTGTTGAGCCAATTTAAGTAAAG
  81 CAATGTTATTGTGACAACATTCCAGTACTCTGAAATAGCCAGGAAACTTCTTTGAATGGAATTTGACTAATATGTGTGTT
 161 TTCTTTTCTTTTGTTTTTGGCTGTCTCTGGTCCTTGATTCAAGATGTATTTTGATTCATCCAAGGGTTTCCAAACTTGTC
 241 TGCAAATTAGGATCACTTGAGAATCCTTTAAAAATTCCAAAGCTCAGGCCATATCCCAGGCCTATTAAATCACAATCTTT
 321 GGTGACGGGTCACAGGCATTGGTAGTTTTGAAGCTCTCCAGGTGATTCCAATGTGCAGACAAATTTGAAAACTGAACCAA
 401 CCACAGGAACATCAAGTACACTGTGGGCCTGGGTCCAGCTTCTTTCCAGTAAGTGTATCTCAGGGGCTTCCAAATTTAGC
 481 TTACATCAGAATCACTTGGAAGGCTTGTTAAAACCCAAGGCTGCTAGGCCCACCCCCAGAGTTTGATACAGTAGACCTCA
 561 GGTGGGACCCAAAAATTTGCATTTCTAACACATTCTCAGCTGATGCAGTCCAGGCTCCATGCTTTGAAAACCACTGGTCT
 641 AGCTTTAGATAGGATATTGAGCCAATTTAAATAAAGCAATATACTGGTCTAGCTGAGTTCTAGAACTTCTCTCTTTAGCT
 721 GGCCATCTGAATACTCCCCCATCACTAATTGTTAAAAAAAGAATCAACTGTTCTTACTCTAGAGCTCTTTTTTCCTTTCT
 801 GCTGATTTGCTGGAAGCACTACAAGACTTCTGTTTGTTCGTTCGTTTGTTTGTTTGTTTGTTTTTAAAGATGGGGTCTTG
 881 TTATATTGCCTAGGCTGGAATGCAGTGGTTATTCACAGGCATGATTATAACACACTACTCTCTCTAACTCCTGGCCTCAA
 961 GCCATCCTCCCAAATAGATGGGACTACTGATGCACACTGCCATGCTGGCCTTACGAAATGTTTTAATAGGCATTTCACTA
1041 ATAGGGATCTGGAGTACAAGGAAATACAGTGCATTTAAGACATAGGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCA
1121 CATTGGGAAGATCACTTGAGGCAAGGAGTTTGAGACCAGACTGGCCAACACAGCGAGACCCCCATCTCTAAAAAAAAAAA
1201 AATTAATAAGACATGGATACAACCAGGGAGGGAGGTTATAATAATAGAGCATCCTGTTAATCAGAATCATGGGGGAGAAC
1281 ATACAGCCCAGCGTGCCTCTCACTTTCCAGAAAGGGTGAGAGGATCATTAGAGAGTTCATTAGAGAGTATTTATTCCTAA
1361 TAAGTCAGATAAATGTCAGTTTCATTTTTAGAAGTTTCACACAATACCTGCTAATGGTGTGATGTCATTTTTCCCCCTGC
1441 TTCAGGTTAATTTTTTGGATATTTCAGAAACCCATAGCAATTCAGTGATTTTTCTTTTTGTAGTAGCTCAGTCAAAACAG
1521 GTAACAGCAGATTAATCATAGAAAATGTTGCTTCCACATTAACAAAACAATCACTGAAAAACAGCAGATGTTTAAATAGA
1601 TTATTTTATAGCTTATTTTGGATATTTTTTCTTTTAATAAACTAATATGATCATTTGAAT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gucuuaggaaCGGACCCAcg 5'
                    ||||||||  
Target 5' tacactgtggGCCTGGGTcc 3'
417 - 436 130.00 -16.90
2
miRNA  3' gucUUAGGAACGGACCCacg 5'
             |: | | | |||||   
Target 5' ttaAGACATAGGCTGGGcat 3'
1075 - 1094 109.00 -8.92
3
miRNA  3' gucUUAG-GAACGGACCCACg 5'
             |||| |   |:| |||| 
Target 5' ttaAATCACAATCTTTGGTGa 3'
305 - 325 105.00 -8.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN5853527 12 COSMIC
COSN31582138 42 COSMIC
COSN30136423 47 COSMIC
COSN19691883 55 COSMIC
COSN31545057 81 COSMIC
COSN30112371 86 COSMIC
COSN31567004 86 COSMIC
COSN30115122 168 COSMIC
COSN19125364 177 COSMIC
COSN9011640 190 COSMIC
COSN20711654 375 COSMIC
COSN9928591 420 COSMIC
COSN29178395 452 COSMIC
COSN14708464 606 COSMIC
COSN9928590 808 COSMIC
COSN16518985 843 COSMIC
COSN26433030 920 COSMIC
COSN27598970 1189 COSMIC
COSN20102039 1190 COSMIC
COSN23777859 1301 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs751167199 2 dbSNP
rs776519740 6 dbSNP
rs763609468 11 dbSNP
rs764069232 20 dbSNP
rs1277206063 26 dbSNP
rs1314280822 33 dbSNP
rs569181701 50 dbSNP
rs1214820500 52 dbSNP
rs1487408278 56 dbSNP
rs1196123491 65 dbSNP
rs996390722 84 dbSNP
rs969764282 85 dbSNP
rs750089624 89 dbSNP
rs558364259 103 dbSNP
rs1171921730 106 dbSNP
rs1286295542 120 dbSNP
rs1415939315 122 dbSNP
rs1173979917 131 dbSNP
rs1228419456 133 dbSNP
rs902082280 153 dbSNP
rs1019084972 158 dbSNP
rs1005039374 162 dbSNP
rs143570415 163 dbSNP
rs1416236197 173 dbSNP
rs1046849977 176 dbSNP
rs1235709524 183 dbSNP
rs958499803 185 dbSNP
rs148901577 187 dbSNP
rs1351983029 192 dbSNP
rs1355758322 193 dbSNP
rs898168747 206 dbSNP
rs1451074961 215 dbSNP
rs764425339 220 dbSNP
rs1248547201 222 dbSNP
rs1429101523 234 dbSNP
rs1044713346 260 dbSNP
rs1319535089 279 dbSNP
rs1379390744 280 dbSNP
rs947969282 294 dbSNP
rs917810651 297 dbSNP
rs1385283459 300 dbSNP
rs902675550 306 dbSNP
rs1051808884 315 dbSNP
rs73798340 324 dbSNP
rs191395649 326 dbSNP
rs10041944 327 dbSNP
rs1475623965 328 dbSNP
rs374047127 328 dbSNP
rs10036377 330 dbSNP
rs1242814397 338 dbSNP
rs1355841990 347 dbSNP
rs968501993 347 dbSNP
rs1208313628 350 dbSNP
rs750295950 371 dbSNP
rs1484781633 373 dbSNP
rs1243682464 376 dbSNP
rs531565415 377 dbSNP
rs1214229862 398 dbSNP
rs147857620 413 dbSNP
rs1019181016 414 dbSNP
rs577931817 429 dbSNP
rs1364196623 431 dbSNP
rs1472224332 434 dbSNP
rs1270713072 435 dbSNP
rs1005089994 443 dbSNP
rs950946863 446 dbSNP
rs929153529 447 dbSNP
rs1461572199 451 dbSNP
rs1331224449 461 dbSNP
rs767228734 462 dbSNP
rs1028204865 465 dbSNP
rs766853277 467 dbSNP
rs928423965 468 dbSNP
rs1340253892 485 dbSNP
rs1242807983 496 dbSNP
rs532723717 498 dbSNP
rs868016821 503 dbSNP
rs553407742 514 dbSNP
rs770967190 515 dbSNP
rs760939396 517 dbSNP
rs1364489947 529 dbSNP
rs1456354774 530 dbSNP
rs898215395 533 dbSNP
rs773374090 539 dbSNP
rs1441692792 550 dbSNP
rs1184959557 551 dbSNP
rs1392940462 554 dbSNP
rs1169277887 556 dbSNP
rs915589254 571 dbSNP
rs1011947954 579 dbSNP
rs907264048 580 dbSNP
rs957059233 587 dbSNP
rs1056432295 588 dbSNP
rs762651458 590 dbSNP
rs541705144 602 dbSNP
rs73798339 606 dbSNP
rs1399663576 607 dbSNP
rs1276312565 608 dbSNP
rs966865565 611 dbSNP
rs1030417574 612 dbSNP
rs1229506201 612 dbSNP
rs185905809 615 dbSNP
rs1168568982 617 dbSNP
rs1259379816 618 dbSNP
rs537231742 620 dbSNP
rs570246230 625 dbSNP
rs1006659371 631 dbSNP
rs1171727011 634 dbSNP
rs1453660692 637 dbSNP
rs778944463 640 dbSNP
rs946836023 643 dbSNP
rs1175878201 692 dbSNP
rs377095661 694 dbSNP
rs1376450888 695 dbSNP
rs181850661 700 dbSNP
rs1047691231 702 dbSNP
rs1364171196 703 dbSNP
rs1382891433 706 dbSNP
rs1296184292 708 dbSNP
rs1214962883 717 dbSNP
rs539520583 718 dbSNP
rs966058161 724 dbSNP
rs565294482 727 dbSNP
rs911885847 732 dbSNP
rs1250312971 734 dbSNP
rs907040595 741 dbSNP
rs1045558593 743 dbSNP
rs768743861 747 dbSNP
rs1186646576 749 dbSNP
rs1266094237 751 dbSNP
rs1202003183 761 dbSNP
rs983729579 761 dbSNP
rs547174595 764 dbSNP
rs1396060718 765 dbSNP
rs1419556346 770 dbSNP
rs950994982 778 dbSNP
rs1157052237 779 dbSNP
rs989901270 784 dbSNP
rs1454520881 794 dbSNP
rs1292971186 799 dbSNP
rs1308954069 801 dbSNP
rs1388668577 802 dbSNP
rs1438546539 805 dbSNP
rs1305608559 835 dbSNP
rs1371455231 839 dbSNP
rs199799944 839 dbSNP
rs546976505 840 dbSNP
rs973078 843 dbSNP
rs1023412998 844 dbSNP
rs1264290912 845 dbSNP
rs1254228483 847 dbSNP
rs138254666 847 dbSNP
rs567994865 847 dbSNP
rs1439451177 848 dbSNP
rs1419823610 851 dbSNP
rs966899721 851 dbSNP
rs896186043 861 dbSNP
rs1366779716 864 dbSNP
rs200603546 864 dbSNP
rs776554874 864 dbSNP
rs1372660604 877 dbSNP
rs1445980088 880 dbSNP
rs1296172652 883 dbSNP
rs1375275824 895 dbSNP
rs1296591294 912 dbSNP
rs1311657606 914 dbSNP
rs755635020 922 dbSNP
rs976694635 923 dbSNP
rs1168950244 926 dbSNP
rs549700247 930 dbSNP
rs554422822 935 dbSNP
rs1433894106 936 dbSNP
rs1056106124 940 dbSNP
rs531372914 941 dbSNP
rs1234896972 943 dbSNP
rs1433773006 946 dbSNP
rs999450477 946 dbSNP
rs750082929 949 dbSNP
rs1476214160 957 dbSNP
rs1174990621 958 dbSNP
rs766969974 964 dbSNP
rs1165683881 973 dbSNP
rs1006277241 974 dbSNP
rs902403977 984 dbSNP
rs1274946374 986 dbSNP
rs1168310719 991 dbSNP
rs887797413 993 dbSNP
rs1442714750 999 dbSNP
rs1043639073 1005 dbSNP
rs1210549530 1014 dbSNP
rs1346137349 1015 dbSNP
rs1353131031 1017 dbSNP
rs1416281386 1025 dbSNP
rs946567985 1026 dbSNP
rs900343269 1027 dbSNP
rs1039129190 1031 dbSNP
rs944758972 1043 dbSNP
rs564328653 1044 dbSNP
rs993424324 1054 dbSNP
rs1316901051 1057 dbSNP
rs1308414720 1067 dbSNP
rs907155202 1071 dbSNP
rs1045650202 1072 dbSNP
rs1486753033 1077 dbSNP
rs1189694220 1083 dbSNP
rs983834195 1091 dbSNP
rs929586695 1093 dbSNP
rs948585515 1100 dbSNP
rs1184677001 1102 dbSNP
rs1304889001 1104 dbSNP
rs761084071 1108 dbSNP
rs1393217785 1113 dbSNP
rs1175044589 1123 dbSNP
rs6868575 1124 dbSNP
rs1054629730 1129 dbSNP
rs533476435 1138 dbSNP
rs935721876 1138 dbSNP
rs1312477032 1141 dbSNP
rs924287453 1149 dbSNP
rs879449611 1161 dbSNP
rs970253391 1170 dbSNP
rs559926391 1174 dbSNP
rs977090734 1175 dbSNP
rs6868947 1180 dbSNP
rs923547076 1184 dbSNP
rs1363163916 1187 dbSNP
rs1242810379 1189 dbSNP
rs1475664305 1191 dbSNP
rs1156261191 1192 dbSNP
rs990573968 1197 dbSNP
rs1393021556 1198 dbSNP
rs76458159 1202 dbSNP
rs1173837902 1203 dbSNP
rs1398617558 1203 dbSNP
rs1455471186 1203 dbSNP
rs796784687 1203 dbSNP
rs965260230 1203 dbSNP
rs1251964929 1205 dbSNP
rs1436374837 1205 dbSNP
rs772934812 1205 dbSNP
rs973077 1206 dbSNP
rs985283146 1207 dbSNP
rs747833617 1208 dbSNP
rs1309018703 1228 dbSNP
rs1034708545 1235 dbSNP
rs1207128841 1239 dbSNP
rs562333467 1249 dbSNP
rs753095514 1260 dbSNP
rs1212983910 1267 dbSNP
rs546820514 1276 dbSNP
rs78580100 1277 dbSNP
rs993538637 1284 dbSNP
rs1363043060 1291 dbSNP
rs1468224442 1292 dbSNP
rs563556643 1293 dbSNP
rs900352906 1311 dbSNP
rs1324448096 1319 dbSNP
rs1397268884 1328 dbSNP
rs1038804293 1330 dbSNP
rs1331025487 1339 dbSNP
rs1334370383 1347 dbSNP
rs1241432750 1349 dbSNP
rs1280422188 1350 dbSNP
rs147031762 1365 dbSNP
rs890513158 1377 dbSNP
rs1047794059 1380 dbSNP
rs1292821066 1400 dbSNP
rs1249484779 1401 dbSNP
rs1054259258 1402 dbSNP
rs929320754 1404 dbSNP
rs1231677203 1407 dbSNP
rs754362630 1413 dbSNP
rs999977624 1417 dbSNP
rs1162126519 1428 dbSNP
rs370171005 1429 dbSNP
rs796860335 1429 dbSNP
rs748885513 1430 dbSNP
rs1396424714 1432 dbSNP
rs1384095455 1433 dbSNP
rs1393538808 1433 dbSNP
rs933686426 1433 dbSNP
rs1329761158 1434 dbSNP
rs1340043094 1435 dbSNP
rs1295133254 1439 dbSNP
rs568717710 1439 dbSNP
rs1335563497 1445 dbSNP
rs766477649 1451 dbSNP
rs184990269 1455 dbSNP
rs779422764 1468 dbSNP
rs1337179237 1474 dbSNP
rs1412053606 1476 dbSNP
rs943595309 1478 dbSNP
rs1163657050 1502 dbSNP
rs992971292 1511 dbSNP
rs535180777 1518 dbSNP
rs1185368481 1522 dbSNP
rs1258994839 1526 dbSNP
rs571802707 1539 dbSNP
rs545366025 1540 dbSNP
rs1371898194 1559 dbSNP
rs985012874 1561 dbSNP
rs566365114 1571 dbSNP
rs1375225206 1582 dbSNP
rs919366821 1585 dbSNP
rs181008432 1596 dbSNP
rs1356137773 1599 dbSNP
rs1381771364 1607 dbSNP
rs1293554046 1608 dbSNP
rs1035207324 1615 dbSNP
rs1324577053 1631 dbSNP
rs1229529540 1632 dbSNP
rs141559913 1635 dbSNP
rs1346958952 1636 dbSNP
rs1208269248 1641 dbSNP
rs1282065614 1643 dbSNP
rs1485698749 1648 dbSNP
rs1203983535 1649 dbSNP
rs1260137718 1652 dbSNP
rs761359170 1652 dbSNP
rs971404549 1652 dbSNP
rs1207403655 1653 dbSNP
rs966815794 1659 dbSNP
rs1021927622 1662 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gucUUAGGAACGGACCcacg 5'
             | |||  ||||||    
Target 5' ugcACUCC-AGCCUGG---- 3'
14 - 28
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000296736.3 | 3UTR | UGGAGGUUGCCACUGCACUCCAGCCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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