pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DBF4   
Synonyms ASK, CHIF, DBF4A, ZDBF1
Description DBF4 zinc finger
Transcript NM_006716   
Expression
Putative miRNA Targets on DBF4
3'UTR of DBF4
(miRNA target sites are highlighted)
>DBF4|NM_006716|3'UTR
   1 AATTTAAAAAATGCATACTTTTCAGAAGTGATAAGGATCATATTCTTGAAATTTTTATAAATATGTATGGAAATTCTTAG
  81 GATTTTTTTACCAGCTTTGTTTACAGACCCAAATGTAAATATTAAAAATAAATATTTGCAATTTTCTACAGAATTGAATA
 161 CCTGTTAAAGAAAAATTACAGAATAAACTTGTGACTGGTCTTGTTTTACATTATATATATGTTCGTAATTGTTTCCTGAG
 241 AATTACAATGAATAATAATTTGCTTTGTCACTGAAAACCACCAGTGAAGTGCAATTTGGGGAATATCAAACTTAGCATTA
 321 TACATTTGGATATTCTAGTTGTATTGTAAATTTTAAAAGATTATCAGGATAACATGACCTTGCCTTGAAAAACCTAAATT
 401 TCATACAGAAAGGAAAAATACATTTCTATGCTTGAATTCTGGAAATCATCAGAAATATTGACACTTGAGGGTCACTGGTG
 481 GACCATGCTAGTATTTTGGTGCTGAGTAATTAGATTATGTATAGGGGTAACTGGAAGCCATGAAGGAAGGACTTAACCAG
 561 GCTACCAAGTGGAATATAATTTATCTGCTATTTTTAATTACTTACCTTGTAAATAACTTTAATAATATTCAAAAGTTGAC
 641 TCTCCTGTGGCTCATGCCACAGGATCCCAGCACTTTGGGAGGCCGAGGCAGGCTGATCACGAGGTCAGAAGATCAAGACC
 721 ATCCTGGCCAACATGGTGAAACCTTGTCTACTAAAAATACAAAAAATTAGCTGGGCATGGCGGCATGCGCCTGTAGTCCC
 801 AGCTACTCCCTCCAGAGGCTGAGAATTGCTTGAACCTGGGAAGTGCAGGTTGCAGTGAGCCAAGATTGTGCCACTGTATT
 881 CCAGACTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAGTTGACTCTACCCCCTAATTTGGTAGGAGATGAAGG
 961 AGAAAAGGATGGCATTGAATTATAGATACAGTTTTGGGATATATACAAGGATTGCCTTGATCTGGCACTTACTGATACAA
1041 GCATTTGGAGAAGAGAAAATTCAAATATAAGAAATTTCAATTTGAATCTGTGGATATAAGGCATTTGCCTTTGAGTATGT
1121 TCTTGTAGGAGTAAGACTACCACCAGTGACATTCAATTGGTTCTATTGCATAGTACATGAATCTATTGTCACTAAAAATT
1201 AGGTTACTAATCTTAATTTTTTTGAAATATATGATTCTCAGTACAGGACTAATTCATATGCTTTTCCTGCATACATTATT
1281 TTGATCATTTGGATAACATCAATGAACACTGGCTTTTTAACACCTTTGTTTTTCATACCAGTACCTGAAGTAGGCTCAAT
1361 AAAAGAGTCTTTACAGTGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgguCGG--UUGAG--UGUCACGUCu 5'
               ||:  ||| :  : ||||||| 
Target 5' gaattGCTTGAACCTGGGAAGTGCAGg 3'
823 - 849 142.00 -12.90
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUcu 5'
            ||| |||: | | ||||||  
Target 5' aaCCA-CCAG-TGA-AGTGCAat 3'
276 - 295 134.00 -15.00
3
miRNA  3' ucggucgGUUGAGUGUCACGUCu 5'
                 ::|:|| |||| ||| 
Target 5' aaatataTGATTCTCAGTACAGg 3'
1225 - 1247 128.00 -12.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30474005 16 COSMIC
COSN28521115 66 COSMIC
COSN2241675 68 COSMIC
COSN30121374 77 COSMIC
COSN30489938 89 COSMIC
COSN30537904 90 COSMIC
COSN30715852 90 COSMIC
COSN6897087 120 COSMIC
COSN31535455 241 COSMIC
COSN31569178 342 COSMIC
COSN20370865 368 COSMIC
COSN22358559 453 COSMIC
COSN20263549 472 COSMIC
COSN9514166 686 COSMIC
COSN8806353 1081 COSMIC
COSN24630479 1110 COSMIC
COSN6897088 1232 COSMIC
COSN32062890 1348 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1445672079 6 dbSNP
rs780624405 11 dbSNP
rs1286882998 12 dbSNP
rs751867915 19 dbSNP
rs1224817908 26 dbSNP
rs766066182 26 dbSNP
rs150711970 34 dbSNP
rs1416484558 35 dbSNP
rs781212168 37 dbSNP
rs550095146 41 dbSNP
rs200960678 46 dbSNP
rs1337019094 47 dbSNP
rs777799317 51 dbSNP
rs1343229549 55 dbSNP
rs137991524 56 dbSNP
rs1201729523 64 dbSNP
rs1401186361 65 dbSNP
rs1413042047 66 dbSNP
rs183447072 68 dbSNP
rs572869162 78 dbSNP
rs1460941523 83 dbSNP
rs1182457954 84 dbSNP
rs1188177228 85 dbSNP
rs991372298 89 dbSNP
rs879180983 90 dbSNP
rs1258338767 103 dbSNP
rs1244194447 115 dbSNP
rs1427017509 123 dbSNP
rs917177776 123 dbSNP
rs949922942 125 dbSNP
rs771791306 140 dbSNP
rs1424833753 141 dbSNP
rs1360982830 142 dbSNP
rs924007023 142 dbSNP
rs188897905 146 dbSNP
rs1359480613 149 dbSNP
rs1290388772 157 dbSNP
rs1431229236 160 dbSNP
rs1349186649 165 dbSNP
rs935450319 169 dbSNP
rs1426561548 179 dbSNP
rs1385923021 180 dbSNP
rs1168119138 189 dbSNP
rs1426932327 191 dbSNP
rs1421981435 195 dbSNP
rs1053814514 199 dbSNP
rs1477924556 201 dbSNP
rs893779541 218 dbSNP
rs192487294 225 dbSNP
rs1039892734 226 dbSNP
rs185096988 226 dbSNP
rs1304137447 229 dbSNP
rs901464501 230 dbSNP
rs544472225 233 dbSNP
rs1305348487 239 dbSNP
rs1297312765 247 dbSNP
rs563232992 249 dbSNP
rs1214870081 252 dbSNP
rs575012335 256 dbSNP
rs17146787 264 dbSNP
rs775951201 268 dbSNP
rs1366161685 283 dbSNP
rs1406688942 283 dbSNP
rs1041636064 298 dbSNP
rs1460550416 301 dbSNP
rs1356459148 302 dbSNP
rs1381343809 312 dbSNP
rs1025836608 316 dbSNP
rs922736972 319 dbSNP
rs188199652 322 dbSNP
rs932906818 323 dbSNP
rs1427622349 325 dbSNP
rs1202093043 330 dbSNP
rs1481037135 339 dbSNP
rs1049965920 343 dbSNP
rs1251754678 362 dbSNP
rs1176083808 363 dbSNP
rs1295800484 365 dbSNP
rs75690702 368 dbSNP
rs17146789 380 dbSNP
rs1016703081 385 dbSNP
rs958323271 394 dbSNP
rs1260993866 399 dbSNP
rs1042388639 400 dbSNP
rs1287684616 402 dbSNP
rs1389679577 404 dbSNP
rs1324280204 405 dbSNP
rs1375638832 408 dbSNP
rs115288203 411 dbSNP
rs1465728236 413 dbSNP
rs971366015 420 dbSNP
rs1178970473 422 dbSNP
rs1470523730 429 dbSNP
rs531574370 433 dbSNP
rs549694189 435 dbSNP
rs1411784404 440 dbSNP
rs977637760 441 dbSNP
rs750994310 446 dbSNP
rs1421455074 451 dbSNP
rs6977504 453 dbSNP
rs959177654 456 dbSNP
rs369520422 459 dbSNP
rs1012124796 468 dbSNP
rs760564570 473 dbSNP
rs1264109211 497 dbSNP
rs1240917225 498 dbSNP
rs1205288315 503 dbSNP
rs1479014481 522 dbSNP
rs1260015743 523 dbSNP
rs989489979 539 dbSNP
rs1197630008 540 dbSNP
rs1318730176 541 dbSNP
rs1027497466 542 dbSNP
rs6977687 550 dbSNP
rs1395548432 553 dbSNP
rs547249339 562 dbSNP
rs1338949741 567 dbSNP
rs1453758039 574 dbSNP
rs149473591 576 dbSNP
rs1455773807 582 dbSNP
rs10263074 586 dbSNP
rs966198767 587 dbSNP
rs1185069028 591 dbSNP
rs1443516861 591 dbSNP
rs537409716 597 dbSNP
rs934236800 598 dbSNP
rs1203205833 603 dbSNP
rs1486778157 606 dbSNP
rs1261272300 607 dbSNP
rs398095213 607 dbSNP
rs74557144 607 dbSNP
rs1357386976 611 dbSNP
rs1317318571 614 dbSNP
rs144788240 617 dbSNP
rs1326110783 618 dbSNP
rs1316646232 621 dbSNP
rs10233682 622 dbSNP
rs1049913937 632 dbSNP
rs751680881 640 dbSNP
rs1423394883 642 dbSNP
rs377607759 644 dbSNP
rs563540807 644 dbSNP
rs749162184 644 dbSNP
rs138048923 645 dbSNP
rs915519126 647 dbSNP
rs767783753 648 dbSNP
rs1165008051 652 dbSNP
rs200380040 655 dbSNP
rs555781017 656 dbSNP
rs1372197143 658 dbSNP
rs1220912558 659 dbSNP
rs756538211 666 dbSNP
rs1315222211 668 dbSNP
rs1215084478 669 dbSNP
rs946971576 670 dbSNP
rs1489432054 677 dbSNP
rs1042812333 678 dbSNP
rs1220509488 682 dbSNP
rs902484015 683 dbSNP
rs1268676193 685 dbSNP
rs556504364 686 dbSNP
rs1056436438 688 dbSNP
rs1283109783 695 dbSNP
rs1403633965 697 dbSNP
rs894992709 698 dbSNP
rs1304410331 701 dbSNP
rs755116157 702 dbSNP
rs1027424057 704 dbSNP
rs574939996 707 dbSNP
rs542166008 718 dbSNP
rs971486081 733 dbSNP
rs1381607329 734 dbSNP
rs1479401482 735 dbSNP
rs1422419054 736 dbSNP
rs887718984 737 dbSNP
rs1200188621 743 dbSNP
rs560719038 744 dbSNP
rs1271081502 749 dbSNP
rs1350288424 760 dbSNP
rs998752226 761 dbSNP
rs1340402142 775 dbSNP
rs572115188 779 dbSNP
rs1296398595 782 dbSNP
rs781500083 783 dbSNP
rs1284486210 784 dbSNP
rs1032014133 786 dbSNP
rs1015021453 789 dbSNP
rs1240783179 796 dbSNP
rs1326354602 797 dbSNP
rs1400635521 798 dbSNP
rs1175380653 801 dbSNP
rs965701232 803 dbSNP
rs1468070665 805 dbSNP
rs1431267824 806 dbSNP
rs957162067 815 dbSNP
rs1469620012 820 dbSNP
rs1231246306 831 dbSNP
rs1184128080 835 dbSNP
rs975836918 837 dbSNP
rs1355908053 848 dbSNP
rs1244095043 849 dbSNP
rs1291247374 855 dbSNP
rs1202093715 858 dbSNP
rs1326118141 859 dbSNP
rs1264206912 867 dbSNP
rs1452561711 869 dbSNP
rs184734091 871 dbSNP
rs564202952 873 dbSNP
rs989979983 874 dbSNP
rs140079271 887 dbSNP
rs964121317 895 dbSNP
rs1408017954 899 dbSNP
rs549818284 905 dbSNP
rs1400012139 906 dbSNP
rs1405763264 906 dbSNP
rs1480622852 906 dbSNP
rs1179793991 907 dbSNP
rs144133073 908 dbSNP
rs1442201096 909 dbSNP
rs1384780853 910 dbSNP
rs1162564683 911 dbSNP
rs1413999232 912 dbSNP
rs1206319029 913 dbSNP
rs1286989766 913 dbSNP
rs1338862965 913 dbSNP
rs76745932 913 dbSNP
rs933993693 913 dbSNP
rs985650322 918 dbSNP
rs1406884554 919 dbSNP
rs1243319194 920 dbSNP
rs529038812 921 dbSNP
rs908836505 930 dbSNP
rs946973581 936 dbSNP
rs745862624 937 dbSNP
rs1447474602 939 dbSNP
rs1320220848 940 dbSNP
rs1333239641 947 dbSNP
rs1365032069 952 dbSNP
rs1161794751 955 dbSNP
rs114549209 960 dbSNP
rs1038579709 961 dbSNP
rs1186250442 970 dbSNP
rs1244281835 972 dbSNP
rs1217118895 978 dbSNP
rs894210095 980 dbSNP
rs923941818 981 dbSNP
rs1450465416 990 dbSNP
rs1219681584 992 dbSNP
rs1361092356 1003 dbSNP
rs56123348 1004 dbSNP
rs565628962 1008 dbSNP
rs1357400242 1011 dbSNP
rs1213707153 1018 dbSNP
rs1359586844 1023 dbSNP
rs895255664 1024 dbSNP
rs948123877 1028 dbSNP
rs1271381205 1031 dbSNP
rs1317652732 1039 dbSNP
rs906832375 1043 dbSNP
rs998929767 1048 dbSNP
rs147319852 1051 dbSNP
rs552134695 1055 dbSNP
rs1194904260 1057 dbSNP
rs957317032 1067 dbSNP
rs1011347698 1068 dbSNP
rs1267409063 1069 dbSNP
rs1017369758 1070 dbSNP
rs1489179125 1075 dbSNP
rs1182372326 1079 dbSNP
rs755503406 1080 dbSNP
rs1274831574 1089 dbSNP
rs1237548260 1096 dbSNP
rs1322675879 1101 dbSNP
rs189662752 1102 dbSNP
rs1281300171 1103 dbSNP
rs1406782156 1118 dbSNP
rs1368383335 1119 dbSNP
rs964527591 1126 dbSNP
rs975490270 1128 dbSNP
rs922682923 1130 dbSNP
rs1171774660 1135 dbSNP
rs1427734463 1138 dbSNP
rs181605856 1142 dbSNP
rs1418567118 1147 dbSNP
rs1465900835 1150 dbSNP
rs1014808855 1152 dbSNP
rs1267397829 1156 dbSNP
rs901749609 1157 dbSNP
rs73706951 1164 dbSNP
rs1239649099 1166 dbSNP
rs746820281 1167 dbSNP
rs1460713480 1170 dbSNP
rs1261088935 1174 dbSNP
rs1225269445 1175 dbSNP
rs568561170 1176 dbSNP
rs73706952 1178 dbSNP
rs1341113633 1183 dbSNP
rs1375751227 1185 dbSNP
rs1450516011 1186 dbSNP
rs1452303014 1196 dbSNP
rs1404356556 1201 dbSNP
rs1339149934 1204 dbSNP
rs1268601943 1207 dbSNP
rs1340323084 1211 dbSNP
rs1157679722 1212 dbSNP
rs1219571647 1217 dbSNP
rs1381712683 1222 dbSNP
rs989870770 1230 dbSNP
rs778248580 1231 dbSNP
rs1260557755 1232 dbSNP
rs1241007931 1240 dbSNP
rs1202019961 1242 dbSNP
rs1483511070 1249 dbSNP
rs372813266 1254 dbSNP
rs776346606 1255 dbSNP
rs968206457 1256 dbSNP
rs1200374738 1259 dbSNP
rs978759277 1260 dbSNP
rs916049773 1262 dbSNP
rs554545068 1264 dbSNP
rs572760484 1268 dbSNP
rs545841871 1272 dbSNP
rs1384786847 1276 dbSNP
rs1045445055 1280 dbSNP
rs906985845 1284 dbSNP
rs761224900 1287 dbSNP
rs916550359 1289 dbSNP
rs1158771158 1292 dbSNP
rs934334950 1296 dbSNP
rs1383031687 1300 dbSNP
rs1241099264 1303 dbSNP
rs1424181967 1308 dbSNP
rs371596580 1312 dbSNP
rs140993245 1318 dbSNP
rs1049103897 1324 dbSNP
rs1426921985 1333 dbSNP
rs1489252189 1338 dbSNP
rs1480095383 1339 dbSNP
rs892823074 1342 dbSNP
rs1011421273 1345 dbSNP
rs1017482531 1361 dbSNP
rs1403045496 1364 dbSNP
rs747701441 1366 dbSNP
rs1293960269 1370 dbSNP
rs887614329 1372 dbSNP
rs769403130 1374 dbSNP
rs1341735508 1384 dbSNP
rs997800954 1385 dbSNP
rs1360064372 1386 dbSNP
rs1363256603 1387 dbSNP
rs1036602320 1389 dbSNP
rs1400835260 1390 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucgGUUGAGUGUCACGUCu 5'
                 ||: |::||||| || 
Target 5' -----ugCAGGUUGCAGUG-AGc 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000265728.1 | 3UTR | UGCAGGUUGCAGUGAGCCAAGAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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