pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HUS1   
Synonyms hHUS1
Description HUS1 checkpoint clamp component
Transcript NM_004507   
Expression
Putative miRNA Targets on HUS1
3'UTR of HUS1
(miRNA target sites are highlighted)
>HUS1|NM_004507|3'UTR
   1 CACCCTGTCGCTGGAGTTGGCATGCAGAGACTTTGTCAGGATGGGAGAGGCCGCAGGTGTTGTGTTCTGATCACTGGTCT
  81 GTGCCCTCACAGCACCGCACATCGACACACTGTACTTATTTGTCCCTCTCTAACATTTTAACTAAAAGTTGATTCAACAA
 161 CACACAGTTGGATAAACATATCACTTCATGTTGCTCATGTCTGTTTTGCTTTGTTTTTAAGACACTGAAAAGAAAAGCTA
 241 GAATTTATTTATTCAGACTTTAAAGAACAATTTCTCATTGATGTTGTGAAAATCGTCATGTATTTAGACTTGGTGTAGTA
 321 GCCAGAATTCGTAAAGCTGTTGCCTGGGAGCTTGGTACTTTCCCTCCAGGCAGAGGCTCTAGCTCAGCACGGCCTGTAGC
 401 GCACAGTCAGTCTTGCATTTCAGTGTGTTCACCCCGCTGCTCCTGCCCCTTGGAGCCCAGTGACAGAAAGAACAGCCTCT
 481 GTCACCCCGCCGCCACTGCCTTGGTTACTCAGAGCACTGTGGGGTGTCACAGCTGCAGCATTTGGAGTCTCTCTCTTGCT
 561 GAGGACTCAAGCCCACCTGAGTCCACTCCCCTCTTGATGCCTAGAGAGCTGGCCCAGCCAACACAGCTCTTAGCTGGGAG
 641 CTCCTTCTGCCATTCCAACTAGTTTCTTCCTGGGGCCAGTTTTGGGTTTAGGTTGTAATTCCTTATATTTCTTTCTTCCA
 721 CAGTGTATCGGATCTGTCGTTCTGGAAAGAAGACCCTTCTATTTAGAGTAGAAACAAACGAAACTTCTAAGGTATCATCT
 801 GTGTTAAGTGATGAGACCATATTTCTTTGATGTTTCTGAACATCAAAGCTGATTCAGTACTGGTAGATGTGCTCATTCTC
 881 CCTGAAACATACCCATCATATTTCCTATTATAATTACATCTCATTGTCCTGTGGAGGTGGACATGATAAACATTATCTTT
 961 TGTTTTCTTGTTTTGTTTTGTTTGAGACGGTCTCATTCTGTCACCCAGACTGGAGTGCAGTGCCACAATCATGGCTCACC
1041 GCATTGACCTCCTTGGCTCAAGGCATCCTCCCACCTCAGCTTCCTGACTAGCTGGGACTACTGGTGTGCACCACCACACC
1121 CAGCTAATTTTCAATTTTTCATAGAGACAGGGTCTCACTGTGTTGTCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCCAC
1201 CCGCCCACCTGGGCCTCCCAAAGTGCTGGGATTACAGGCATCAGCCATCACACCCATCCATAAACATTATATTAATGTCA
1281 CATTACAAAACTGAGACCTAAGTTGCTTAGGATAAAATGAAATTGGAAGACTAGCTAACATGAAAATTTATATTTTGGCT
1361 TTTTCATGTTTTTTGATAAAACCAGTGTATTTGAATGATTCTTTTGATGTTTAGTAATGGTTTTTTGTTTGTTTTTTGGT
1441 TTTTTTTTTTGAGACGGAGTCTCACTCTGTCGCCAGTCTGGAGTGCTAGTGGCGCGATCTTGGCTTACTGCAGCCTCCAC
1521 TTCCCAAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCATGCCACCACGCCCGGCTAAT
1601 TTTTGTATTTTTAGTAGAGACGGAGTTTCACTGTGTTGGCCAGGATGGTCTCGATCTCGACCTCGTGATCACCCACCTTG
1681 GCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCTATGTTTAATAATGTTGAAATAGGATGGAATAT
1761 TTTGTTAAATTAACATTTTAAAATTAGAAGACACCGTTTTAATTTTTAAACCCTTCCTCCTCTCATTGTAACGAAATTAA
1841 TTCCAGCTGCAGTGAGAAAACTTAAAAATCATGATACAAAATGAAACAATATCTGAAAGTAGTTTTATAAAACTGAAATT
1921 GCTGTTAAAGAGAATGTGTTAGTGACTTAACCATTTGCTCTATGTGATGTTTATTATCAAATACATATAATTTTGAAGAT
2001 TTTAATGAATGGCTTAAGATTTTATCTTTGTGTAGAATGTGGCTAAAGAAACCTTAGTTGAGATTCAAAAAAAAAAAAAA
2081 AAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCUGGUUCGGAGGAAGGGa 5'
            ::|| |  | : |:||||| 
Target 5' ctGGGAGCTTGGTACTTTCCCt 3'
344 - 365 132.00 -18.40
2
miRNA  3' gauucUGGU-UCGGA-G-GAAGGGa 5'
               ||:: ||||| | |||||| 
Target 5' ggcttACTGCAGCCTCCACTTCCCa 3'
1502 - 1526 129.00 -17.10
3
miRNA  3' gaUUCUG-------GUUCGGA-----GGAAGGGa 5'
            |||||       :|| ::|     ||||||: 
Target 5' agAAGACACCGTTTTAATTTTTAAACCCTTCCTc 3'
1786 - 1819 128.00 -12.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31563956 33 COSMIC
COSN26979514 36 COSMIC
COSN30163065 40 COSMIC
COSN31518568 54 COSMIC
COSN26979516 56 COSMIC
COSN31560640 79 COSMIC
COSN31595315 110 COSMIC
COSN30151532 130 COSMIC
COSN30540842 170 COSMIC
COSN20104233 437 COSMIC
COSN2225218 524 COSMIC
COSN9991154 726 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769814143 8 dbSNP
rs201035634 9 dbSNP
rs1397738596 10 dbSNP
rs374884606 10 dbSNP
rs1244462314 12 dbSNP
rs768499401 14 dbSNP
rs372660732 22 dbSNP
rs763682656 29 dbSNP
rs747002138 31 dbSNP
rs937417456 31 dbSNP
rs779811171 34 dbSNP
rs1199145197 35 dbSNP
rs757878706 36 dbSNP
rs1287136273 37 dbSNP
rs1239701067 43 dbSNP
rs3176608 52 dbSNP
rs1481541050 53 dbSNP
rs1248552648 56 dbSNP
rs1018539407 57 dbSNP
rs1187922413 64 dbSNP
rs1468671976 73 dbSNP
rs984157258 74 dbSNP
rs951484506 81 dbSNP
rs1025882427 83 dbSNP
rs1195084994 92 dbSNP
rs1392780265 95 dbSNP
rs114754011 96 dbSNP
rs902236069 97 dbSNP
rs1042121134 99 dbSNP
rs778367512 100 dbSNP
rs1200553986 101 dbSNP
rs965514827 103 dbSNP
rs1018400135 104 dbSNP
rs1343797245 110 dbSNP
rs1006560303 111 dbSNP
rs1253924429 114 dbSNP
rs893568601 115 dbSNP
rs1218733017 119 dbSNP
rs893282760 125 dbSNP
rs373879384 126 dbSNP
rs1309219336 130 dbSNP
rs1216689640 132 dbSNP
rs1257237421 132 dbSNP
rs1054656279 143 dbSNP
rs77988320 151 dbSNP
rs1298985955 155 dbSNP
rs1244623742 158 dbSNP
rs1487927881 168 dbSNP
rs1032397923 178 dbSNP
rs1186632630 181 dbSNP
rs186980160 183 dbSNP
rs1363662384 193 dbSNP
rs1169150068 225 dbSNP
rs927543902 239 dbSNP
rs902214209 240 dbSNP
rs1462299515 246 dbSNP
rs1338728880 247 dbSNP
rs142997403 252 dbSNP
rs949288114 261 dbSNP
rs950036097 265 dbSNP
rs894947729 267 dbSNP
rs1054979507 270 dbSNP
rs983933734 274 dbSNP
rs1398130500 278 dbSNP
rs1277478600 283 dbSNP
rs1355930302 288 dbSNP
rs1301373669 294 dbSNP
rs183344163 295 dbSNP
rs909950530 299 dbSNP
rs1390481039 300 dbSNP
rs984640986 306 dbSNP
rs1447526231 309 dbSNP
rs964567664 312 dbSNP
rs1387043552 315 dbSNP
rs1018823182 316 dbSNP
rs1475791318 318 dbSNP
rs929984802 330 dbSNP
rs918621053 331 dbSNP
rs547974016 341 dbSNP
rs1197256607 343 dbSNP
rs1347106054 343 dbSNP
rs1483181984 350 dbSNP
rs1417941257 353 dbSNP
rs765637023 357 dbSNP
rs111922480 358 dbSNP
rs1228159786 366 dbSNP
rs911360367 371 dbSNP
rs750141586 386 dbSNP
rs565528133 390 dbSNP
rs3176609 392 dbSNP
rs1350980575 393 dbSNP
rs3176610 400 dbSNP
rs1046013106 401 dbSNP
rs1310667335 406 dbSNP
rs563563271 417 dbSNP
rs375791539 431 dbSNP
rs1472671719 432 dbSNP
rs376249223 435 dbSNP
rs374193202 436 dbSNP
rs370483714 437 dbSNP
rs3176611 439 dbSNP
rs397748201 439 dbSNP
rs543030351 444 dbSNP
rs771683540 449 dbSNP
rs573565296 450 dbSNP
rs911763485 458 dbSNP
rs1299623679 462 dbSNP
rs1374233435 469 dbSNP
rs987338150 472 dbSNP
rs966623423 473 dbSNP
rs1048470517 475 dbSNP
rs930052959 476 dbSNP
rs889135184 484 dbSNP
rs1442289599 485 dbSNP
rs560025986 488 dbSNP
rs529740677 489 dbSNP
rs1292638902 492 dbSNP
rs918560221 493 dbSNP
rs989176504 494 dbSNP
rs539992768 496 dbSNP
rs957993399 499 dbSNP
rs1424404461 501 dbSNP
rs1041035401 502 dbSNP
rs1333164362 506 dbSNP
rs1397817134 507 dbSNP
rs1445653716 508 dbSNP
rs1326163832 510 dbSNP
rs745391088 515 dbSNP
rs778380259 519 dbSNP
rs370034755 524 dbSNP
rs1273679537 528 dbSNP
rs1230336684 530 dbSNP
rs577411576 531 dbSNP
rs985702502 533 dbSNP
rs1260458950 536 dbSNP
rs1316443348 541 dbSNP
rs1198340114 550 dbSNP
rs906023530 551 dbSNP
rs764121854 554 dbSNP
rs765572047 557 dbSNP
rs1475727294 566 dbSNP
rs1014494886 567 dbSNP
rs1347244339 569 dbSNP
rs1464912030 579 dbSNP
rs554821555 592 dbSNP
rs1323978177 599 dbSNP
rs192452261 605 dbSNP
rs3176612 609 dbSNP
rs1326494209 610 dbSNP
rs1401218273 616 dbSNP
rs930666767 618 dbSNP
rs977836335 622 dbSNP
rs966876547 625 dbSNP
rs150443392 626 dbSNP
rs1039113841 637 dbSNP
rs1457350561 638 dbSNP
rs1013240511 641 dbSNP
rs1394253064 645 dbSNP
rs541177865 649 dbSNP
rs1447647138 657 dbSNP
rs1195853459 661 dbSNP
rs1260953384 676 dbSNP
rs140610086 685 dbSNP
rs1188428574 686 dbSNP
rs1374186773 687 dbSNP
rs911709394 695 dbSNP
rs987286035 699 dbSNP
rs145853357 718 dbSNP
rs1162280054 720 dbSNP
rs945269598 722 dbSNP
rs959056827 729 dbSNP
rs1295763855 730 dbSNP
rs775556997 738 dbSNP
rs769779729 739 dbSNP
rs1451497117 752 dbSNP
rs1313942213 754 dbSNP
rs1342619659 761 dbSNP
rs1242966084 767 dbSNP
rs561233662 779 dbSNP
rs745592862 780 dbSNP
rs1487943849 783 dbSNP
rs1211492461 787 dbSNP
rs994233001 791 dbSNP
rs777005925 793 dbSNP
rs1421839164 799 dbSNP
rs970488957 804 dbSNP
rs1024454729 807 dbSNP
rs897248699 808 dbSNP
rs1441119289 816 dbSNP
rs1041132087 820 dbSNP
rs1156352649 823 dbSNP
rs1379126054 825 dbSNP
rs1329994228 829 dbSNP
rs567916479 835 dbSNP
rs1404893519 845 dbSNP
rs1394666641 860 dbSNP
rs1333865563 871 dbSNP
rs1377964975 874 dbSNP
rs1242542109 876 dbSNP
rs1307250110 878 dbSNP
rs944027108 889 dbSNP
rs1233976098 891 dbSNP
rs889825097 892 dbSNP
rs1226730372 894 dbSNP
rs771014141 895 dbSNP
rs1199698688 907 dbSNP
rs548108571 911 dbSNP
rs1250936263 917 dbSNP
rs576968330 918 dbSNP
rs536976417 920 dbSNP
rs1176377606 928 dbSNP
rs1237101888 947 dbSNP
rs1026567904 959 dbSNP
rs1177527741 964 dbSNP
rs1379902871 970 dbSNP
rs995535292 980 dbSNP
rs1172397952 984 dbSNP
rs1401452920 985 dbSNP
rs899156116 988 dbSNP
rs111416166 989 dbSNP
rs1320273044 1004 dbSNP
rs1435178690 1006 dbSNP
rs925447959 1007 dbSNP
rs978685396 1008 dbSNP
rs777758703 1017 dbSNP
rs772167489 1025 dbSNP
rs551981627 1031 dbSNP
rs151316494 1034 dbSNP
rs563015709 1037 dbSNP
rs755340816 1040 dbSNP
rs913764547 1041 dbSNP
rs959024055 1042 dbSNP
rs549067619 1049 dbSNP
rs529254537 1050 dbSNP
rs936615202 1054 dbSNP
rs1245473962 1056 dbSNP
rs1467523670 1059 dbSNP
rs952068209 1062 dbSNP
rs139439438 1068 dbSNP
rs1458579928 1071 dbSNP
rs1295414938 1074 dbSNP
rs970436721 1083 dbSNP
rs35927427 1097 dbSNP
rs779384951 1101 dbSNP
rs992955027 1108 dbSNP
rs1342228301 1113 dbSNP
rs1247433406 1119 dbSNP
rs540125514 1122 dbSNP
rs1321991297 1133 dbSNP
rs1026931844 1134 dbSNP
rs1263228257 1143 dbSNP
rs1487877016 1154 dbSNP
rs1216630814 1157 dbSNP
rs1264558845 1158 dbSNP
rs901703419 1160 dbSNP
rs1192007964 1164 dbSNP
rs1279657566 1168 dbSNP
rs995086247 1169 dbSNP
rs963986218 1172 dbSNP
rs1184830089 1173 dbSNP
rs1348287439 1175 dbSNP
rs1457477986 1181 dbSNP
rs1342691082 1182 dbSNP
rs1019647295 1185 dbSNP
rs2686836 1186 dbSNP
rs1398035880 1187 dbSNP
rs371832240 1193 dbSNP
rs890501764 1194 dbSNP
rs889752981 1199 dbSNP
rs1317909086 1202 dbSNP
rs143455400 1203 dbSNP
rs936917558 1204 dbSNP
rs1359356159 1205 dbSNP
rs1310157442 1206 dbSNP
rs188283783 1213 dbSNP
rs1042673543 1217 dbSNP
rs892286877 1220 dbSNP
rs1489587343 1221 dbSNP
rs1423420166 1222 dbSNP
rs575213560 1225 dbSNP
rs1170892800 1234 dbSNP
rs945529121 1235 dbSNP
rs1390140558 1240 dbSNP
rs1483784144 1245 dbSNP
rs1183901876 1246 dbSNP
rs766611574 1252 dbSNP
rs1186723669 1253 dbSNP
rs1411923548 1254 dbSNP
rs936577356 1256 dbSNP
rs754143297 1266 dbSNP
rs1382222453 1271 dbSNP
rs1417848193 1275 dbSNP
rs1238263199 1276 dbSNP
rs141098698 1278 dbSNP
rs1300827045 1281 dbSNP
rs2686835 1288 dbSNP
rs1240397011 1299 dbSNP
rs1310891256 1300 dbSNP
rs926247981 1303 dbSNP
rs1350862119 1305 dbSNP
rs1238711621 1313 dbSNP
rs1284193159 1314 dbSNP
rs35796271 1326 dbSNP
rs542899080 1327 dbSNP
rs1341332115 1332 dbSNP
rs1236053476 1334 dbSNP
rs982519359 1348 dbSNP
rs553040487 1349 dbSNP
rs1295376936 1356 dbSNP
rs1026633957 1362 dbSNP
rs1240176915 1366 dbSNP
rs1437919714 1369 dbSNP
rs972038370 1375 dbSNP
rs1283094992 1382 dbSNP
rs1445283354 1388 dbSNP
rs1372045780 1389 dbSNP
rs1310200625 1392 dbSNP
rs1173757258 1393 dbSNP
rs966233286 1395 dbSNP
rs1405069365 1397 dbSNP
rs1018744184 1401 dbSNP
rs919411473 1405 dbSNP
rs1430850227 1418 dbSNP
rs1445425168 1428 dbSNP
rs183750836 1433 dbSNP
rs963632116 1435 dbSNP
rs889887658 1439 dbSNP
rs1028388813 1440 dbSNP
rs1001261610 1444 dbSNP
rs1017817098 1445 dbSNP
rs1181232100 1451 dbSNP
rs1247343865 1451 dbSNP
rs78174653 1451 dbSNP
rs986385755 1451 dbSNP
rs3176614 1455 dbSNP
rs1030319213 1456 dbSNP
rs1009636725 1458 dbSNP
rs1254293419 1464 dbSNP
rs1465961431 1471 dbSNP
rs572148521 1472 dbSNP
rs538443623 1474 dbSNP
rs1043030680 1480 dbSNP
rs1408976694 1481 dbSNP
rs1272381682 1483 dbSNP
rs1009823919 1484 dbSNP
rs896622442 1485 dbSNP
rs1332305047 1491 dbSNP
rs1056658892 1493 dbSNP
rs937720052 1494 dbSNP
rs1417748189 1495 dbSNP
rs926339847 1496 dbSNP
rs1048832203 1498 dbSNP
rs1288646761 1500 dbSNP
rs896140219 1509 dbSNP
rs930294970 1511 dbSNP
rs1453409740 1513 dbSNP
rs918966954 1518 dbSNP
rs1478081698 1519 dbSNP
rs972359506 1520 dbSNP
rs919678782 1522 dbSNP
rs1195625893 1524 dbSNP
rs1421175416 1527 dbSNP
rs1474910754 1528 dbSNP
rs1163472973 1531 dbSNP
rs965950487 1533 dbSNP
rs569209886 1535 dbSNP
rs942202834 1536 dbSNP
rs761796606 1539 dbSNP
rs985910756 1543 dbSNP
rs1401122327 1545 dbSNP
rs549064728 1549 dbSNP
rs553747095 1557 dbSNP
rs762521853 1558 dbSNP
rs1285021962 1562 dbSNP
rs1414449711 1564 dbSNP
rs1000997752 1572 dbSNP
rs1358681616 1573 dbSNP
rs968414139 1577 dbSNP
rs1291088798 1578 dbSNP
rs1020961728 1579 dbSNP
rs1010205081 1580 dbSNP
rs986335055 1582 dbSNP
rs752687174 1584 dbSNP
rs1187923607 1585 dbSNP
rs896758424 1586 dbSNP
rs2708902 1589 dbSNP
rs3176616 1593 dbSNP
rs145007445 1594 dbSNP
rs1420909930 1595 dbSNP
rs1032841193 1614 dbSNP
rs776531267 1621 dbSNP
rs930419796 1622 dbSNP
rs1335221846 1631 dbSNP
rs1342525013 1642 dbSNP
rs1330678309 1644 dbSNP
rs1450690747 1652 dbSNP
rs558485905 1658 dbSNP
rs918890847 1659 dbSNP
rs533046697 1664 dbSNP
rs760434581 1665 dbSNP
rs1258904711 1666 dbSNP
rs1349805427 1667 dbSNP
rs1200864948 1670 dbSNP
rs1013490077 1671 dbSNP
rs944402228 1675 dbSNP
rs911797655 1683 dbSNP
rs986045315 1685 dbSNP
rs3176617 1688 dbSNP
rs1388923963 1690 dbSNP
rs1368888259 1693 dbSNP
rs564420605 1693 dbSNP
rs925812736 1694 dbSNP
rs1156255668 1703 dbSNP
rs537218489 1707 dbSNP
rs775231624 1708 dbSNP
rs1404781128 1713 dbSNP
rs544036406 1716 dbSNP
rs1468494278 1717 dbSNP
rs1336326065 1719 dbSNP
rs530734003 1720 dbSNP
rs191034265 1725 dbSNP
rs942484104 1727 dbSNP
rs1335151380 1729 dbSNP
rs3176618 1739 dbSNP
rs1456868538 1753 dbSNP
rs3176619 1756 dbSNP
rs1177931102 1769 dbSNP
rs986282517 1785 dbSNP
rs1424359726 1795 dbSNP
rs933544427 1802 dbSNP
rs923524551 1806 dbSNP
rs771877914 1812 dbSNP
rs988116836 1817 dbSNP
rs1009552065 1818 dbSNP
rs1200193153 1819 dbSNP
rs1379808804 1821 dbSNP
rs960724556 1821 dbSNP
rs1468578708 1824 dbSNP
rs1176099608 1825 dbSNP
rs1401341463 1825 dbSNP
rs956916740 1826 dbSNP
rs1035260835 1828 dbSNP
rs1191747283 1828 dbSNP
rs569727629 1832 dbSNP
rs1303338117 1833 dbSNP
rs979911012 1845 dbSNP
rs969483533 1846 dbSNP
rs1319612651 1847 dbSNP
rs1201985070 1849 dbSNP
rs1250335648 1852 dbSNP
rs1488523227 1855 dbSNP
rs1248049712 1861 dbSNP
rs1271710055 1871 dbSNP
rs1479719650 1872 dbSNP
rs1207586002 1875 dbSNP
rs1023448879 1876 dbSNP
rs1199208970 1878 dbSNP
rs905321357 1878 dbSNP
rs1478964408 1880 dbSNP
rs960575687 1881 dbSNP
rs3176620 1889 dbSNP
rs994135090 1890 dbSNP
rs552977046 1899 dbSNP
rs1313219578 1904 dbSNP
rs1404230149 1905 dbSNP
rs1038065684 1908 dbSNP
rs1301021217 1913 dbSNP
rs994973564 1919 dbSNP
rs772107636 1921 dbSNP
rs545833663 1924 dbSNP
rs1212519147 1933 dbSNP
rs1232670209 1944 dbSNP
rs1368004707 1947 dbSNP
rs1321256111 1949 dbSNP
rs1246386606 1951 dbSNP
rs897558133 1957 dbSNP
rs1490019547 1959 dbSNP
rs578160232 1960 dbSNP
rs933491079 1962 dbSNP
rs1294260241 1964 dbSNP
rs1487063390 1964 dbSNP
rs558433831 1967 dbSNP
rs944368561 1969 dbSNP
rs890159803 1978 dbSNP
rs530841489 1981 dbSNP
rs186580704 1983 dbSNP
rs1424586999 1984 dbSNP
rs1167071044 1987 dbSNP
rs1159182312 1988 dbSNP
rs748156015 1988 dbSNP
rs931906964 1989 dbSNP
rs925256205 1993 dbSNP
rs1288028501 1994 dbSNP
rs797018937 1995 dbSNP
rs1379492849 2025 dbSNP
rs1397405061 2026 dbSNP
rs979444338 2028 dbSNP
rs1171547469 2032 dbSNP
rs1451207065 2034 dbSNP
rs1240171616 2038 dbSNP
rs925747121 2048 dbSNP
rs3176621 2058 dbSNP
rs1319213704 2063 dbSNP
rs916670197 2068 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaUUCUGGUUCG----GAGGAAGGGa 5'
            ||| :|||||    ||||| ||: 
Target 5' --AAGUUCAAGCGAUUCUCCUGCCUc 3'
1 - 24
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_004507 | 3UTR | UUACUGCAGCCUCCACUUCCCAAGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGCGCAUGCCACCACGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGACGGAGUUUCACUGUGUUGGCCAGGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_004507 | 3UTR | CUUCCCAAGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGCGCAUGCCACCACGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGACGGAGUUUCACUGUGUUGGCCAGGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_004507 | 3UTR | CCACUUCCCAAGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGCGCAUGCCACCACGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGACGGAGUUUCACUGUGUUGGCCAGGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_004507 | 3UTR | CCCAAGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGCGCAUGCCACCACGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGACGGAGUUUCACUGUGUUGGCCAGGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_004507 | 3UTR | CCACUUCCCAAGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGCGCAUGCCACCACGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGACGGAGUUUCACUGUGUUGGCCAGGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000258774.5 | 3UTR | AAGUUCAAGCGAUUCUCCUGCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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