pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol YES1   
Synonyms HsT441, P61-YES, Yes, c-yes
Description YES proto-oncogene 1, Src family tyrosine kinase
Transcript NM_005433   
Expression
Putative miRNA Targets on YES1
3'UTR of YES1
(miRNA target sites are highlighted)
>YES1|NM_005433|3'UTR
   1 TTCAAGTAGCCTATTTTATATGCACAAATCTGCCAAAATATAAAGAACTTGTGTAGATTTTCTACAGGAATCAAAAGAAG
  81 AAAATCTTCTTTACTCTGCATGTTTTTAATGGTAAACTGGAATCCCAGATATGGTTGCACAAAACCACTTTTTTTTCCCC
 161 AAGTATTAAACTCTAATGTACCAATGATGAATTTATCAGCGTATTTCAGGGTCCAAACAAAATAGAGCTAAGATACTGAT
 241 GACAGTGTGGGTGACAGCATGGTAATGAAGGACAGTGAGGCTCCTGCTTATTTATAAATCATTTCCTTTCTTTTTTTCCC
 321 CAAAGTCAGAATTGCTCAAAGAAAATTATTTATTGTTACAGATAAAACTTGAGAGATAAAAAGCTATACCATAATAAAAT
 401 CTAAAATTAAGGAATATCATGGGACCAAATAATTCCATTCCAGTTTTTTAAAGTTTCTTGCATTTATTATTCTCAAAAGT
 481 TTTTTCTAAGTTAAACAGTCAGTATGCAATCTTAATATATGCTTTCTTTTGCATGGACATGGGCCAGGTTTTTCAAAAGG
 561 AATATAAACAGGATCTCAAACTTGATTAAATGTTAGACCACAGAAGTGGAATTTGAAAGTATAATGCAGTACATTAATAT
 641 TCATGTTCATGGAACTGAAAGAATAAGAACTTTTTCACTTCAGTCCTTTTCTGAAGAGTTTGACTTAGAATAATGAAGGT
 721 AACTAGAAAGTGAGTTAATCTTGTATGAGGTTGCATTGATTTTTTAAGGCAATATATAATTGAAACTACTGTCCAATCAA
 801 AGGGGAAATGTTTTGATCTTTAGATAGCATGCAAAGTAAGACCCAGCATTTTAAAAGCCCTTTTTAAAAACTAGACTTCG
 881 TACTGTGAGTATTGCTTATATGTCCTTATGGGGATGGGTGCCACAAATAGAAAATATGACCAGATCAGGGACTTGAATGC
 961 ACTTTTGCTCATGGTGAATATAGATGAACAGAGAGGAAAATGTATTTAAAAGAAATACGAGAAAAGAAAGTGAAAGTTTT
1041 ACAAGTTAGAGGGATGGAAGGTAATGTTTAATGTTGATGTCATGGAGTGACAGAATGGCTTTGCTGGCACTCAGAGCTCC
1121 TCACTTAGCTATATTCTGAGACTTTGAAGAGTTATAAAGTATAACTATAAAACTAATTTTTCTTACACACTAAATGGGTA
1201 TTTGTTCAAAATAATGAAGTTATGGCTTCACATTCATTGCAGTGGGATATGGTTTTTATGTAAAACATTTTTAGAACTCC
1281 AGTTTTCAAATCATGTTTGAATCTACATTCACTTTTTTTTGTTTTCTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGG
1361 CTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACACCATTCTCCTGCCTCAGCCTCCCG
1441 AGTAGCTGGGACTACAGGTGCCCACCACCACGCCTGGCTAGTTTTTTGTATTTTTAGTAGAGACGCAGTTTCACCGTGTT
1521 AGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCC
1601 ACCGCGCCCAGCCTACATTCACTTCTAAAGTCTATGTAATGGTGGTCATTTTTTCCCTTTTAGAATACATTAAATGGTTG
1681 ATTTGGGGAGGAAAACTTATTCTGAATATTAACGGTGGTGAAAAGGGGACAGTTTTTACCCTAAAGTGCAAAAGTGAAAC
1761 ATACAAAATAAGACTAATTTTTAAGAGTAACTCAGTAATTTCAAAATACAGATTTGAATAGCAGCATTAGTGGTTTGAGT
1841 GTCTAGCAAAGGAAAAATTGATGAATAAAATGAAGGTCTGGTGTATATGTTTTAAAATACTCTCATATAGTCACACTTTA
1921 AATTAAGCCTTATATTAGGCCCCTCTATTTTCAGGATATAATTCTTAACTATCATTATTTACCTGATTTTAATCATCAGA
2001 TTCGAAATTCTGTGCCATGGCATATATGTTCAAATTCAAACCATTTTTAAAATGTGAAGATGGACTTCATGCAAGTTGGC
2081 AGTGGTTCTGGTACTAAAAATTGTGGTTGTTTTTTCTGTTTACGTAACCTGCTTAGTATTGACACTCTCTACCAAGAGGG
2161 TCTTCCTAAGAAGAGTGCTGTCATTATTTCCTCTTATCAACAACTTGTGACATGAGATTTTTTAAGGGCTTTATGTGAAC
2241 TATGATATTGTAATTTTTCTAAGCATATTCAAAAGGGTGACAAAATTACGTTTATGTACTAAATCTAATCAGGAAAGTAA
2321 GGCAGGAAAAGTTGATGGTATTCATTAGGTTTTAACTGAATGGAGCAGTTCCTTATATAATAACAATTGTATAGTAGGGA
2401 TAAAACACTAACTTAATGTGTATTCATTTTAAATTGTTCTGTATTTTTAAATTGCCAAGAAAAACAACTTTGTAAATTTG
2481 GAGATATTTTCCAACAGCTTTTCGTCTTCAGTGTCTTAATGTGGAAGTTAACCCTTACCAAAAAAGGAAGTTGGCAAAAA
2561 CAGCCTTCTAGCACACTTTTTTAAATGAATAATGGTAGCCTAAACTTAATATTTTTATAAAGTATTGTAATATTGTTTTG
2641 TGGATAATTGAAATAAAAAGTTCTCATTGAATGCACCTATTAATCGTTTTAGTTGCTATTCATATTCTCATTCGTTTTTT
2721 AAAAACTGATATATTCTGAATTTATTCTTCCATTGAGAAAAAAATGTTCAGTTACTTGTAACTACTGAGCAGAATTTAAT
2801 CAATCCTTTATTAAATTCAGAACATTATTGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' ccATTCTCCTGCCTCAGCCTc 3'
1417 - 1437 156.00 -21.90
2
miRNA  3' ggUAGAAG---GAAGUCGGAg 5'
            |||| |   | ||:|||| 
Target 5' tgATCTGCCCGCCTCGGCCTc 3'
1551 - 1571 136.00 -17.50
3
miRNA  3' gguAGAAG-GAAGUC-GGAg 5'
             |:||| |||||| ||| 
Target 5' actTTTTCACTTCAGTCCTt 3'
669 - 688 131.00 -14.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30473735 46 COSMIC
COSN31579010 97 COSMIC
COSN17923035 126 COSMIC
COSN25986436 140 COSMIC
COSN30528449 148 COSMIC
COSN31562328 149 COSMIC
COSN30133131 156 COSMIC
COSN31545382 200 COSMIC
COSN28194440 203 COSMIC
COSN31557667 277 COSMIC
COSN31547725 366 COSMIC
COSN31482015 408 COSMIC
COSN30030567 472 COSMIC
COSN31551418 479 COSMIC
COSN31520067 526 COSMIC
COSN31565227 667 COSMIC
COSN5848535 722 COSMIC
COSN5848534 738 COSMIC
COSN22124091 779 COSMIC
COSN31534023 949 COSMIC
COSN31589373 962 COSMIC
COSN31529153 1024 COSMIC
COSN20114590 1029 COSMIC
COSN31529403 1063 COSMIC
COSN17732031 1196 COSMIC
COSN32065989 1376 COSMIC
COSN32065988 1381 COSMIC
COSN6666143 1556 COSMIC
COSN24920007 1627 COSMIC
COSN21513253 1922 COSMIC
COSN6551481 2004 COSMIC
COSN27700748 2020 COSMIC
COSN28673136 2069 COSMIC
COSN31521637 2109 COSMIC
COSN31566500 2116 COSMIC
COSN26574252 2326 COSMIC
COSN20114585 2413 COSMIC
COSN31585808 2475 COSMIC
COSN15660484 2622 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs762172228 5 dbSNP
rs752021580 6 dbSNP
rs1336688609 7 dbSNP
rs373167378 9 dbSNP
rs370733020 13 dbSNP
rs763335585 16 dbSNP
rs546293592 18 dbSNP
rs1161983030 19 dbSNP
rs1458418744 20 dbSNP
rs1268007068 23 dbSNP
rs769980162 35 dbSNP
rs368444834 37 dbSNP
rs147116037 39 dbSNP
rs369135022 40 dbSNP
rs746767586 41 dbSNP
rs773056717 42 dbSNP
rs772089867 47 dbSNP
rs748017548 49 dbSNP
rs778456524 51 dbSNP
rs1259792378 57 dbSNP
rs114039991 64 dbSNP
rs1187754881 68 dbSNP
rs1420647060 80 dbSNP
rs978006493 80 dbSNP
rs1168901256 88 dbSNP
rs202136846 92 dbSNP
rs116649399 94 dbSNP
rs377045484 95 dbSNP
rs1357046114 100 dbSNP
rs1412524399 101 dbSNP
rs1283430714 105 dbSNP
rs554650504 119 dbSNP
rs534391068 131 dbSNP
rs1270730420 132 dbSNP
rs565684907 134 dbSNP
rs562845983 136 dbSNP
rs1282554217 141 dbSNP
rs1232137959 149 dbSNP
rs544372861 156 dbSNP
rs1319799918 157 dbSNP
rs1476564678 157 dbSNP
rs757434615 162 dbSNP
rs1003160592 176 dbSNP
rs1361753561 180 dbSNP
rs907367950 181 dbSNP
rs1376718518 187 dbSNP
rs1432520364 191 dbSNP
rs1333048338 197 dbSNP
rs114764425 200 dbSNP
rs557553749 201 dbSNP
rs1268195422 216 dbSNP
rs916289520 235 dbSNP
rs1053561146 240 dbSNP
rs1305774358 259 dbSNP
rs1345769020 260 dbSNP
rs868801692 265 dbSNP
rs539550495 267 dbSNP
rs1200112739 268 dbSNP
rs796826797 272 dbSNP
rs936318410 275 dbSNP
rs760542366 283 dbSNP
rs796694837 294 dbSNP
rs1247784818 298 dbSNP
rs1376114802 301 dbSNP
rs977973839 311 dbSNP
rs1196014791 314 dbSNP
rs147961527 317 dbSNP
rs560483269 318 dbSNP
rs1171646141 320 dbSNP
rs1408350042 333 dbSNP
rs1402073874 334 dbSNP
rs553774006 337 dbSNP
rs974518909 349 dbSNP
rs1441593000 355 dbSNP
rs1327784781 360 dbSNP
rs1368887149 362 dbSNP
rs964592268 363 dbSNP
rs1280201553 367 dbSNP
rs1353176344 371 dbSNP
rs1222257295 376 dbSNP
rs1267937179 377 dbSNP
rs1469154897 379 dbSNP
rs1216119551 383 dbSNP
rs867382113 389 dbSNP
rs1016742593 391 dbSNP
rs1006334467 394 dbSNP
rs1197616224 401 dbSNP
rs950769249 408 dbSNP
rs1470983289 415 dbSNP
rs1156457721 419 dbSNP
rs1410989485 425 dbSNP
rs1461715183 426 dbSNP
rs1026358647 427 dbSNP
rs1388570506 428 dbSNP
rs186053629 431 dbSNP
rs1280827254 436 dbSNP
rs1337579132 443 dbSNP
rs1440329843 460 dbSNP
rs907421741 462 dbSNP
rs1335919416 469 dbSNP
rs1044684007 479 dbSNP
rs1271645441 486 dbSNP
rs1356322111 488 dbSNP
rs372116654 489 dbSNP
rs1196859875 498 dbSNP
rs1271518437 499 dbSNP
rs1438998315 502 dbSNP
rs1179589051 529 dbSNP
rs1227529725 532 dbSNP
rs1013481400 538 dbSNP
rs1189867701 539 dbSNP
rs1366473102 542 dbSNP
rs1339233814 547 dbSNP
rs1457381624 551 dbSNP
rs1168385978 553 dbSNP
rs1398752001 562 dbSNP
rs1278146859 568 dbSNP
rs1398751008 577 dbSNP
rs771193015 587 dbSNP
rs1356406358 598 dbSNP
rs1416832286 602 dbSNP
rs1335340374 619 dbSNP
rs1291867020 625 dbSNP
rs1414204173 627 dbSNP
rs1053936259 628 dbSNP
rs1169830469 632 dbSNP
rs1253540856 633 dbSNP
rs1475793279 634 dbSNP
rs1423066578 645 dbSNP
rs11548679 646 dbSNP
rs936471268 649 dbSNP
rs1273262904 650 dbSNP
rs1485820697 664 dbSNP
rs1212537771 667 dbSNP
rs1253853733 669 dbSNP
rs1422975871 671 dbSNP
rs1193825419 679 dbSNP
rs923694545 683 dbSNP
rs1447571848 699 dbSNP
rs1168094630 705 dbSNP
rs182334214 708 dbSNP
rs1301271742 710 dbSNP
rs933000190 712 dbSNP
rs1298176888 721 dbSNP
rs1383066237 721 dbSNP
rs1476183148 736 dbSNP
rs1363715245 747 dbSNP
rs923167261 753 dbSNP
rs1258125377 759 dbSNP
rs777892520 762 dbSNP
rs1296277928 766 dbSNP
rs373162455 766 dbSNP
rs1347920264 768 dbSNP
rs1236069919 774 dbSNP
rs1253824390 775 dbSNP
rs1482807124 777 dbSNP
rs974654548 789 dbSNP
rs1209183515 790 dbSNP
rs1440418777 796 dbSNP
rs1187808138 804 dbSNP
rs754272874 808 dbSNP
rs1455601934 810 dbSNP
rs964887684 811 dbSNP
rs909081390 813 dbSNP
rs1454488510 817 dbSNP
rs1291044168 825 dbSNP
rs764750971 825 dbSNP
rs985278205 827 dbSNP
rs1316899226 848 dbSNP
rs775483358 851 dbSNP
rs55771020 859 dbSNP
rs1026409024 875 dbSNP
rs1220386291 878 dbSNP
rs1298546093 879 dbSNP
rs971407634 880 dbSNP
rs1269820075 882 dbSNP
rs1326760585 884 dbSNP
rs1357929766 896 dbSNP
rs771791902 901 dbSNP
rs1208049352 905 dbSNP
rs116006720 922 dbSNP
rs1013198629 924 dbSNP
rs1469764739 927 dbSNP
rs893289333 928 dbSNP
rs1447800963 930 dbSNP
rs570659122 937 dbSNP
rs1266729831 939 dbSNP
rs1419935666 942 dbSNP
rs1161500566 943 dbSNP
rs1410243392 952 dbSNP
rs1033140109 955 dbSNP
rs1331262058 957 dbSNP
rs756538361 980 dbSNP
rs902241300 982 dbSNP
rs1366239912 998 dbSNP
rs1399825885 1001 dbSNP
rs1042137118 1002 dbSNP
rs1289775054 1013 dbSNP
rs932969089 1018 dbSNP
rs1227634767 1019 dbSNP
rs202056485 1026 dbSNP
rs76054241 1029 dbSNP
rs112780479 1030 dbSNP
rs1273563280 1030 dbSNP
rs1323478234 1030 dbSNP
rs145037346 1030 dbSNP
rs56342716 1030 dbSNP
rs76222387 1031 dbSNP
rs1463029116 1039 dbSNP
rs1414455305 1041 dbSNP
rs1472383496 1042 dbSNP
rs1189157279 1049 dbSNP
rs1420435815 1058 dbSNP
rs901545746 1066 dbSNP
rs527831486 1069 dbSNP
rs1234445130 1070 dbSNP
rs753182067 1071 dbSNP
rs1182221874 1078 dbSNP
rs1348813088 1081 dbSNP
rs1461995863 1097 dbSNP
rs1309313707 1111 dbSNP
rs1368382237 1120 dbSNP
rs1408812474 1124 dbSNP
rs1293719760 1144 dbSNP
rs1381015980 1151 dbSNP
rs1039355348 1152 dbSNP
rs560393090 1155 dbSNP
rs548132166 1160 dbSNP
rs115311992 1161 dbSNP
rs1272554491 1164 dbSNP
rs984607196 1166 dbSNP
rs929145912 1169 dbSNP
rs919319285 1176 dbSNP
rs562808703 1180 dbSNP
rs981549713 1182 dbSNP
rs192320794 1190 dbSNP
rs1420936898 1204 dbSNP
rs1313428700 1207 dbSNP
rs1023009231 1210 dbSNP
rs187036941 1223 dbSNP
rs1334877024 1231 dbSNP
rs1428737447 1240 dbSNP
rs991898831 1250 dbSNP
rs1291248622 1252 dbSNP
rs1445454451 1253 dbSNP
rs1228298353 1268 dbSNP
rs1362645113 1272 dbSNP
rs1354820154 1273 dbSNP
rs1295538046 1275 dbSNP
rs1341489085 1280 dbSNP
rs779256213 1280 dbSNP
rs1281704122 1290 dbSNP
rs1235319046 1292 dbSNP
rs147567387 1294 dbSNP
rs1440908675 1311 dbSNP
rs957608283 1316 dbSNP
rs1187177376 1321 dbSNP
rs142007417 1321 dbSNP
rs17516244 1321 dbSNP
rs398120089 1321 dbSNP
rs1376459200 1322 dbSNP
rs1329482801 1324 dbSNP
rs1443239113 1326 dbSNP
rs1033690800 1333 dbSNP
rs999009000 1337 dbSNP
rs903384145 1338 dbSNP
rs1345525925 1341 dbSNP
rs1437216946 1342 dbSNP
rs565522812 1345 dbSNP
rs1276677920 1346 dbSNP
rs901514670 1349 dbSNP
rs1159093177 1350 dbSNP
rs1038658758 1351 dbSNP
rs1207400234 1351 dbSNP
rs12961275 1352 dbSNP
rs1049470949 1353 dbSNP
rs17551255 1354 dbSNP
rs1412456222 1355 dbSNP
rs17551248 1355 dbSNP
rs386800144 1356 dbSNP
rs879601196 1356 dbSNP
rs981518662 1356 dbSNP
rs1245660952 1358 dbSNP
rs950073028 1360 dbSNP
rs915986930 1362 dbSNP
rs991475104 1363 dbSNP
rs1450450007 1364 dbSNP
rs957617586 1365 dbSNP
rs547886723 1366 dbSNP
rs967511295 1367 dbSNP
rs574499187 1369 dbSNP
rs181660148 1370 dbSNP
rs868013768 1371 dbSNP
rs569851260 1372 dbSNP
rs1007205322 1374 dbSNP
rs1179812495 1374 dbSNP
rs1293085984 1375 dbSNP
rs17551241 1376 dbSNP
rs545468322 1377 dbSNP
rs552389307 1378 dbSNP
rs17551234 1381 dbSNP
rs949875986 1383 dbSNP
rs566929055 1384 dbSNP
rs1433477397 1385 dbSNP
rs146477038 1386 dbSNP
rs925979917 1387 dbSNP
rs17516230 1388 dbSNP
rs1483857522 1389 dbSNP
rs1266017081 1391 dbSNP
rs562572795 1392 dbSNP
rs1488237535 1393 dbSNP
rs1189536304 1395 dbSNP
rs550861448 1396 dbSNP
rs17516223 1400 dbSNP
rs1213467202 1401 dbSNP
rs976861205 1402 dbSNP
rs748458497 1403 dbSNP
rs964200027 1404 dbSNP
rs1403364172 1405 dbSNP
rs1017337296 1407 dbSNP
rs368125075 1408 dbSNP
rs1340454570 1409 dbSNP
rs1217573969 1411 dbSNP
rs951740442 1414 dbSNP
rs1027775316 1415 dbSNP
rs367596548 1416 dbSNP
rs1483369395 1417 dbSNP
rs540771883 1419 dbSNP
rs1399364803 1420 dbSNP
rs1253789971 1422 dbSNP
rs1358541643 1423 dbSNP
rs1189090882 1426 dbSNP
rs528698337 1427 dbSNP
rs1314555141 1428 dbSNP
rs560253740 1429 dbSNP
rs541978776 1436 dbSNP
rs574463045 1439 dbSNP
rs1014076074 1440 dbSNP
rs1432339941 1445 dbSNP
rs1294214509 1446 dbSNP
rs1423779250 1449 dbSNP
rs1192264063 1453 dbSNP
rs1254059306 1459 dbSNP
rs188975592 1459 dbSNP
rs1477821115 1460 dbSNP
rs1261642093 1461 dbSNP
rs1463479904 1462 dbSNP
rs1183981929 1463 dbSNP
rs554432782 1464 dbSNP
rs1483758847 1465 dbSNP
rs558600964 1466 dbSNP
rs1208338588 1467 dbSNP
rs1377442212 1467 dbSNP
rs549696578 1468 dbSNP
rs1258871245 1469 dbSNP
rs541203119 1470 dbSNP
rs922834227 1471 dbSNP
rs566585837 1472 dbSNP
rs554623590 1475 dbSNP
rs985898591 1479 dbSNP
rs370963250 1481 dbSNP
rs1266136578 1484 dbSNP
rs571835660 1487 dbSNP
rs1208287589 1488 dbSNP
rs1489474843 1488 dbSNP
rs1267016456 1489 dbSNP
rs762569020 1490 dbSNP
rs1410172753 1491 dbSNP
rs971698858 1492 dbSNP
rs961729018 1494 dbSNP
rs568904944 1495 dbSNP
rs1024214167 1496 dbSNP
rs1463556364 1499 dbSNP
rs1410023901 1500 dbSNP
rs1422118509 1501 dbSNP
rs1190160503 1503 dbSNP
rs781545266 1504 dbSNP
rs1255947913 1505 dbSNP
rs550522453 1505 dbSNP
rs56793935 1506 dbSNP
rs1291101843 1507 dbSNP
rs529827145 1507 dbSNP
rs1238958440 1508 dbSNP
rs386800142 1508 dbSNP
rs386800143 1508 dbSNP
rs755156149 1508 dbSNP
rs1198094032 1509 dbSNP
rs58178670 1510 dbSNP
rs1000041115 1513 dbSNP
rs1416661403 1514 dbSNP
rs377417798 1515 dbSNP
rs561493837 1516 dbSNP
rs1321017480 1517 dbSNP
rs184292401 1518 dbSNP
rs1226508550 1519 dbSNP
rs1041275294 1520 dbSNP
rs181229276 1521 dbSNP
rs1211322106 1522 dbSNP
rs931515152 1522 dbSNP
rs920321396 1523 dbSNP
rs146312589 1524 dbSNP
rs569264257 1525 dbSNP
rs1024016518 1526 dbSNP
rs373122756 1527 dbSNP
rs544166989 1528 dbSNP
rs576779903 1529 dbSNP
rs492056 1530 dbSNP
rs1000413690 1531 dbSNP
rs904389175 1532 dbSNP
rs540188109 1533 dbSNP
rs376355783 1535 dbSNP
rs189358268 1536 dbSNP
rs890009068 1537 dbSNP
rs750535040 1538 dbSNP
rs1488152546 1539 dbSNP
rs931458413 1541 dbSNP
rs1437471503 1542 dbSNP
rs1242061201 1544 dbSNP
rs568965933 1546 dbSNP
rs17516216 1549 dbSNP
rs940381969 1550 dbSNP
rs538987264 1552 dbSNP
rs1332454931 1553 dbSNP
rs764109167 1555 dbSNP
rs564942 1556 dbSNP
rs547247955 1557 dbSNP
rs1390650234 1558 dbSNP
rs958417425 1559 dbSNP
rs376960673 1560 dbSNP
rs527885552 1561 dbSNP
rs1158387316 1562 dbSNP
rs1438139520 1563 dbSNP
rs549558075 1565 dbSNP
rs1348410419 1566 dbSNP
rs571808218 1566 dbSNP
rs1432602882 1568 dbSNP
rs562536640 1569 dbSNP
rs1279418861 1571 dbSNP
rs1357666971 1572 dbSNP
rs1010029365 1574 dbSNP
rs1218645813 1575 dbSNP
rs1488556760 1578 dbSNP
rs965402064 1579 dbSNP
rs1221212277 1580 dbSNP
rs1214157407 1581 dbSNP
rs1346699243 1582 dbSNP
rs1275007606 1584 dbSNP
rs1231927817 1585 dbSNP
rs550438943 1586 dbSNP
rs1007282671 1587 dbSNP
rs889821218 1589 dbSNP
rs1361727488 1590 dbSNP
rs532113838 1591 dbSNP
rs762268461 1592 dbSNP
rs17551227 1593 dbSNP
rs1060910 1594 dbSNP
rs572763063 1595 dbSNP
rs1465630023 1598 dbSNP
rs936990898 1599 dbSNP
rs927014109 1600 dbSNP
rs1195926479 1602 dbSNP
rs11659287 1603 dbSNP
rs1444015389 1603 dbSNP
rs1392320693 1604 dbSNP
rs143342112 1604 dbSNP
rs17551213 1605 dbSNP
rs557409541 1606 dbSNP
rs965205393 1607 dbSNP
rs1382687027 1608 dbSNP
rs146943900 1608 dbSNP
rs577967374 1609 dbSNP
rs17551206 1610 dbSNP
rs1345385385 1614 dbSNP
rs759058483 1614 dbSNP
rs535025235 1615 dbSNP
rs1261256311 1617 dbSNP
rs1460808420 1634 dbSNP
rs567367481 1643 dbSNP
rs184494406 1644 dbSNP
rs1249944260 1647 dbSNP
rs1342400754 1655 dbSNP
rs1426984573 1663 dbSNP
rs1192668930 1670 dbSNP
rs1214791167 1674 dbSNP
rs1467959089 1676 dbSNP
rs1174709924 1677 dbSNP
rs192176188 1688 dbSNP
rs1320683735 1693 dbSNP
rs1218696637 1707 dbSNP
rs189118101 1713 dbSNP
rs897440510 1714 dbSNP
rs1225179169 1715 dbSNP
rs1281117256 1725 dbSNP
rs1322786975 1725 dbSNP
rs1209225012 1728 dbSNP
rs1429105297 1729 dbSNP
rs1484894811 1730 dbSNP
rs1342588912 1732 dbSNP
rs1335253287 1734 dbSNP
rs1268388054 1737 dbSNP
rs1395731432 1738 dbSNP
rs1015836417 1746 dbSNP
rs1197760781 1748 dbSNP
rs1404164274 1761 dbSNP
rs1172920924 1764 dbSNP
rs1466146396 1765 dbSNP
rs1473220059 1768 dbSNP
rs1013779984 1771 dbSNP
rs1365038804 1775 dbSNP
rs1451084912 1776 dbSNP
rs896622930 1779 dbSNP
rs17516202 1780 dbSNP
rs1406362234 1793 dbSNP
rs1301097976 1795 dbSNP
rs570291622 1807 dbSNP
rs937066355 1811 dbSNP
rs550648165 1818 dbSNP
rs1042761460 1821 dbSNP
rs1315039628 1822 dbSNP
rs1186574109 1827 dbSNP
rs561213106 1830 dbSNP
rs1440396287 1833 dbSNP
rs1266072421 1836 dbSNP
rs532149856 1839 dbSNP
rs1239557564 1840 dbSNP
rs1489604895 1854 dbSNP
rs1220479453 1858 dbSNP
rs1268648593 1866 dbSNP
rs947038358 1867 dbSNP
rs1184784099 1875 dbSNP
rs913171637 1878 dbSNP
rs1418984849 1883 dbSNP
rs73943168 1885 dbSNP
rs1258006325 1886 dbSNP
rs1213381113 1888 dbSNP
rs1286176877 1904 dbSNP
rs1161212180 1911 dbSNP
rs770525919 1915 dbSNP
rs1364565767 1919 dbSNP
rs1410268304 1922 dbSNP
rs372956183 1927 dbSNP
rs185447950 1932 dbSNP
rs943883408 1935 dbSNP
rs1390706457 1938 dbSNP
rs912360031 1941 dbSNP
rs985696799 1942 dbSNP
rs1285213977 1945 dbSNP
rs1244066419 1952 dbSNP
rs572328895 1952 dbSNP
rs1343127877 1958 dbSNP
rs1027472520 1959 dbSNP
rs1447680180 1968 dbSNP
rs148825288 1971 dbSNP
rs762515943 1977 dbSNP
rs1182902986 1982 dbSNP
rs1256250163 1985 dbSNP
rs1446001932 1994 dbSNP
rs756626303 1995 dbSNP
rs1181197401 1997 dbSNP
rs1384274623 2003 dbSNP
rs961344336 2003 dbSNP
rs1015866225 2010 dbSNP
rs1013809745 2015 dbSNP
rs1333567834 2016 dbSNP
rs1461435231 2017 dbSNP
rs1303294148 2021 dbSNP
rs1060922 2022 dbSNP
rs1033889947 2024 dbSNP
rs1314440168 2024 dbSNP
rs376884071 2026 dbSNP
rs1399706008 2031 dbSNP
rs1002773698 2041 dbSNP
rs1326900177 2043 dbSNP
rs1407080535 2048 dbSNP
rs201078508 2056 dbSNP
rs146966353 2058 dbSNP
rs72532196 2059 dbSNP
rs1162446601 2061 dbSNP
rs558234085 2065 dbSNP
rs74729114 2069 dbSNP
rs563381178 2078 dbSNP
rs1475548937 2080 dbSNP
rs116247307 2099 dbSNP
rs578003656 2100 dbSNP
rs751145666 2108 dbSNP
rs1427775550 2116 dbSNP
rs1235875124 2117 dbSNP
rs943997920 2123 dbSNP
rs1468138805 2124 dbSNP
rs912462322 2125 dbSNP
rs1389409465 2128 dbSNP
rs150118620 2134 dbSNP
rs920041133 2136 dbSNP
rs534981890 2138 dbSNP
rs57239746 2144 dbSNP
rs1322066938 2151 dbSNP
rs1203531992 2152 dbSNP
rs1261978176 2160 dbSNP
rs1015563284 2162 dbSNP
rs1228141382 2173 dbSNP
rs1240064149 2176 dbSNP
rs1485330151 2193 dbSNP
rs556075568 2195 dbSNP
rs1357679202 2197 dbSNP
rs544677828 2200 dbSNP
rs992155252 2203 dbSNP
rs769045258 2205 dbSNP
rs961020102 2212 dbSNP
rs1175548272 2213 dbSNP
rs766109169 2216 dbSNP
rs1412614460 2224 dbSNP
rs1402581172 2227 dbSNP
rs1316285371 2233 dbSNP
rs537789231 2244 dbSNP
rs1305360928 2248 dbSNP
rs1034332102 2250 dbSNP
rs1223441349 2261 dbSNP
rs1353458388 2264 dbSNP
rs1225023579 2277 dbSNP
rs1281491423 2288 dbSNP
rs1316000942 2289 dbSNP
rs1222708596 2290 dbSNP
rs1002397992 2291 dbSNP
rs1061035 2306 dbSNP
rs1021340063 2308 dbSNP
rs1233434581 2317 dbSNP
rs1011243588 2332 dbSNP
rs551644008 2347 dbSNP
rs1156928473 2361 dbSNP
rs192224474 2363 dbSNP
rs1438632788 2377 dbSNP
rs1165628097 2379 dbSNP
rs140763056 2380 dbSNP
rs750068733 2383 dbSNP
rs1308998396 2385 dbSNP
rs897790448 2385 dbSNP
rs1338092529 2389 dbSNP
rs879093682 2389 dbSNP
rs1440597739 2393 dbSNP
rs1349266406 2394 dbSNP
rs891069496 2399 dbSNP
rs536224428 2406 dbSNP
rs766890180 2407 dbSNP
rs932514621 2409 dbSNP
rs1439511099 2410 dbSNP
rs1179494358 2412 dbSNP
rs200305028 2415 dbSNP
rs35188047 2415 dbSNP
rs1038466424 2416 dbSNP
rs1491245330 2416 dbSNP
rs1185487494 2417 dbSNP
rs940125742 2418 dbSNP
rs1424229428 2421 dbSNP
rs908619178 2443 dbSNP
rs1438754512 2467 dbSNP
rs1408727424 2471 dbSNP
rs1328696521 2480 dbSNP
rs546302259 2486 dbSNP
rs1341589462 2498 dbSNP
rs528058385 2503 dbSNP
rs960970286 2504 dbSNP
rs1192430672 2507 dbSNP
rs926911443 2509 dbSNP
rs981398876 2511 dbSNP
rs1270561632 2513 dbSNP
rs146494327 2514 dbSNP
rs1221542674 2524 dbSNP
rs1272278775 2536 dbSNP
rs548860115 2555 dbSNP
rs1205698485 2566 dbSNP
rs530753498 2576 dbSNP
rs1444261819 2580 dbSNP
rs1194098749 2583 dbSNP
rs955819759 2583 dbSNP
rs1031365786 2585 dbSNP
rs1217792472 2596 dbSNP
rs1007912971 2599 dbSNP
rs554440149 2609 dbSNP
rs1221047672 2616 dbSNP
rs1049674631 2617 dbSNP
rs1274313891 2618 dbSNP
rs1395093461 2627 dbSNP
rs1295928883 2633 dbSNP
rs997126659 2640 dbSNP
rs898411599 2645 dbSNP
rs1269349800 2647 dbSNP
rs1038242821 2650 dbSNP
rs763992642 2660 dbSNP
rs1342292701 2663 dbSNP
rs908648857 2665 dbSNP
rs1460875757 2672 dbSNP
rs1205788599 2673 dbSNP
rs1264199673 2676 dbSNP
rs1445462360 2679 dbSNP
rs1192957097 2684 dbSNP
rs534398844 2685 dbSNP
rs1418787305 2686 dbSNP
rs1056925739 2690 dbSNP
rs1429189215 2691 dbSNP
rs1343101126 2696 dbSNP
rs1465157369 2697 dbSNP
rs1288923635 2705 dbSNP
rs939377092 2713 dbSNP
rs908802955 2714 dbSNP
rs983068048 2725 dbSNP
rs6506476 2726 dbSNP
rs920343468 2727 dbSNP
rs973158864 2728 dbSNP
rs1281374942 2729 dbSNP
rs1196644379 2730 dbSNP
rs1311522254 2732 dbSNP
rs1479776646 2733 dbSNP
rs112855601 2734 dbSNP
rs1375416793 2752 dbSNP
rs956846880 2753 dbSNP
rs1022756365 2757 dbSNP
rs1194854581 2763 dbSNP
rs1204715359 2766 dbSNP
rs1270050131 2769 dbSNP
rs993086306 2778 dbSNP
rs75525933 2779 dbSNP
rs1197692832 2784 dbSNP
rs762969267 2788 dbSNP
rs1259211187 2790 dbSNP
rs1420176558 2791 dbSNP
rs543976964 2803 dbSNP
rs1159239532 2806 dbSNP
rs1031621941 2809 dbSNP
rs182684758 2813 dbSNP
rs1157606759 2818 dbSNP
rs904562472 2831 dbSNP
rs541567352 2832 dbSNP
rs574081264 2833 dbSNP
rs1221698442 2836 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084041. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep1 HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_005433 | 3UTR | GUUUUCUUUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCUGCCUCCCAGGUUCACACCAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGUGCCCACCACCACGCCUGGCUAGUUUUUUGUAUUUUUAGUAGAGACGCAGUUUCACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_005433 | 3UTR | UUUUCUUUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCUGCCUCCCAGGUUCACACCAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_005433 | 3UTR | UUUUUUGAGACGGAGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGCGAUCUCGGCUCACUGCAAGCUCUGCCUCCCAGGUUCACACCAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGUGCCCACCACCACGCCUGGCUAGUUUUUUGUAUUUUUAGUAGAGACGCAGUUUCACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084041
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep1
Location of target site ENST00000577961.1 | 3UTR | GAUUACAGGCGUGAGCCACCGCGCCCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000577961.1 | 3UTR | AUUACAGGCGUGAGCCACCGCGCCCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000577961.1 | 3UTR | GGAUUACAGGCGUGAGCCACCGCGCCCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000577961.1 | 3UTR | GCUGGGAUUACAGGCGUGAGCCACCGCGCCCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000577961.1 | 3UTR | GGAUUACAGGCGUGAGCCACCGCGCCCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

Error report submission