pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol TGIF2   
Synonyms -
Description TGFB induced factor homeobox 2
Transcript NM_021809   
Expression
Putative miRNA Targets on TGIF2
3'UTR of TGIF2
(miRNA target sites are highlighted)
>TGIF2|NM_021809|3'UTR
   1 GCATCTGCCAAGAAGGGTGCTGAAGGCTCCAGCCAGCTGTCCTGGGTTTCCGTTTTGGTTCCCTTTCATACAGAGGGTTT
  81 TCTATGGATCACTGCCAAACATTGGGATCATCTCCTCTGTCCAGAGGTCTTCAACAGGAAGATGCCAGCTGGCACCACTG
 161 CACTGTGATGGGGGCCCTCTCCTCTGCTGACTCTGCCGTTTCTCCAGGCCTCCGCTCAGTGATGAGACCAAGAGATCGGA
 241 GACAAGCATGGTGCTGCTGCTTCTGCTGCTTCTCCAGAAAATCCCTGGGACACCTTTGTTCCAGCCTGGTTTCCTGGGCT
 321 GGGCTCAGGAAAGCTGCCAAATTCAGTCCTATGTTGGGTCCAAGCTGCCCCTGTGCTGTTTCTGTCAAGCCAGGTGTGGA
 401 CATTCCAAGTTCATATGCGTGAACAAAAGAAAAGAGGAACCCAGTGGATGTAACAGAACCGACTCCAGTTGAATGTTTAG
 481 ATTTTTGCTAAACTGTTTTCTTTTTCCCTTTTTTGCTGTGGTTTGCATTCACGGCAGTAGTTAGCCCAGGTGTGGGGAAC
 561 GAGAGTGCACTGCATGATAGCGTTCTGGTGAGCTGGGAAGGACCCACCACTGCCACTGAGGATTGTTTTGGAAGAAAGGA
 641 ATATTTTTATCTTGGGGACCAGCTAAGTCTCTGCAGTAGTGTGAAATTCCAAATGGTTGTTTTATCATTGGTTTGGTTTA
 721 CCAAAAAAAAGGCAGGGAAAAAAAAAAAAAACAACCGTATGAGCGCATTGGCTTGTCTGCCGCAGGCACAGAAGGGTAGA
 801 AAGCCACAGCAGGGGGCAGTCCAGCAGACTCTGACTCAACTTTCTAGGCACCTAGCAGAGAAAGATAAGATCAAAAGGTG
 881 TTTGGTTTTTCTTTTAATTTTTATTGTAGTTTTTTTGGGTGGGTGGGGGAAGTAAACTAGACTGAAGCGATGGATTTTTT
 961 TTTTCTTTTTTTTCTTTAGTGTTTTTCCCTTTGTTCTTGAACACTTTTGCCCTGCAGCCTCAGTTTTGAATTCTTTTAGC
1041 AACTTGGATTAGAGGGGCCCATATGTCAGAAGCTCCCAGCACCTCCTACTTGGGAGAAAAGTGAGCCATCTGCTGGTCAG
1121 GAAGTCCTCCAGAGAGGCAGCTTTTCCCACAATGGTGGCAGGAAACTTTGGGGAAAGCAGGAATGGTGTCCACTGCTGCG
1201 GAGGAACTGCCTTCAGAGAAGGTGGGGCTGGAAAAGGGTTAGAAGCCTCCTAGCTGGGATTGTCTTTGTTTCACCTTTCT
1281 TTAAATTAGAATTACAGAAGCCCCTGCCCAGTGAACAGATAACGATTGGTCTTATGCTCCTCCCTTTCCCCCATTTTTTC
1361 TTTTGCTGTTTTGTTTTTTGTTTTTTGTTTGTTTGTTTGTTTTTTTGAGACAGAGTCATGCTCTGTCACCCGGGCTGGAG
1441 TGCAGTGGTGCGATCTCAGCTCACTGTAACCTCCGCCTCCCGGGTTCAAGCAATTATTTGCCTCAGCCTCCCGAGTAGCT
1521 GGGATTATAGGCACCCGCCACCATGTCTGGCTTTTAGTAGAGACGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGGAAC
1601 TCCTGACCTCGTGAGCCACCACGCCCAGCCTCTTTTGCTGTTTCATTGCTGACAGTGTTCAACAATATGCCCCATCTTTA
1681 TATATCCTAAGAAACACTAATCCTAGGTTATTGCTAGCCAAAATATTTTTGTCCTGAGTAGTGTCACTGGGCCAAAAGAT
1761 AGATCAGGACGACAGCCTTTAGTTTTCCTGAAATCACCAGGTCAGGCACAAGGAGAAAAGGTTCCTGGATACTGACTAAC
1841 TTGGGTGGGTCTAGCCAGGAGAAAGACAGTAACATGTGTTCTGTACTTTCTGGGAAGATCCCTGAAGCCATCACAGAGGC
1921 TCCCCAACTTCTGAGTCGCCCATCTGTTGCTGTGGGAGTGTGAACGGATCGCTGAAGGAGAGGGAGCTTTGCTCTCTCTA
2001 GGTGGGCAAGTTTCCTGGGCTCTCTGTGTTGCCTCCCTCTGGCTTCTTCCTCCCGTGCCCTCTCCCCGTGTGCCCCAGGG
2081 GGATCAGGGATCCTCACCCTCCTGAGGCCCAGTGGGGAAGAATGAACATGGCTTCATCCAGGTTAACTGATGCTGCCATT
2161 TGCCCAGCCTCTTCCATCCCAGCCCTGTCAGTGAGCCCAGGTCTGGTGCAACTGCTGCAGGATGCCTGTAGTAGGGAACT
2241 CTGGAAGTGTATTGGGCTGAGGTGGGATTTTCCCTCCCCACAGTGCACTGAGCAATGGAGGGTGGTGAGGGAGCCATGCT
2321 GCTGAATTCTGGTTGGCATTTCCCCATTATGTAAAATGGGGTGTTGGGTAGGGCAGACTCTGCTTGGGTTTGGTTGTAAG
2401 ATAAACCTGGAGGAGAAGCACAGTTGTCCCATTGAATTATTTGAGCAAAAACTACTGTAAATAACTTTTTTGTCTTTTGT
2481 CAAATAAAATTTTTTTTTGTTTTTTTAAGCAGAAACAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accacGUUUUCAUUAACACCAAAAa 5'
               ||||||  :|| ||||||| 
Target 5' aagatCAAAAGGTGTT-TGGTTTTt 3'
867 - 890 167.00 -11.60
2
miRNA  3' acCACGUUUUCA---UUAACACCAAAAa 5'
            |||::||| |   ||| || ||||| 
Target 5' taGTGTGAAATTCCAAATGGTTGTTTTa 3'
677 - 704 147.00 -5.94
3
miRNA  3' accacguuuucauuaACACCAAAaa 5'
                         ||||||||  
Target 5' ttttcccttttttgcTGTGGTTTgc 3'
502 - 526 130.00 -7.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30116712 3 COSMIC
COSN30160117 6 COSMIC
COSN30452927 51 COSMIC
COSN2382353 76 COSMIC
COSN30450305 78 COSMIC
COSN30191556 89 COSMIC
COSN30469746 115 COSMIC
COSN30156063 118 COSMIC
COSN28862549 158 COSMIC
COSN31549871 318 COSMIC
COSN29417155 491 COSMIC
COSN31570565 504 COSMIC
COSN19656205 736 COSMIC
COSN29280828 752 COSMIC
COSN30540409 1055 COSMIC
COSN31490366 1130 COSMIC
COSN28714718 1140 COSMIC
COSN31553596 1538 COSMIC
COSN31490357 1573 COSMIC
COSN31531188 1616 COSMIC
COSN26508081 1629 COSMIC
COSN31557684 1722 COSMIC
COSN31562709 1771 COSMIC
COSN20116427 1852 COSMIC
COSN9127055 2040 COSMIC
COSN5969605 2167 COSMIC
COSN31541078 2290 COSMIC
COSN26573132 2435 COSMIC
COSN31515838 2440 COSMIC
COSN31602550 2476 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759423877 2 dbSNP
rs1466948992 3 dbSNP
rs767519437 4 dbSNP
rs1263310000 9 dbSNP
rs372115125 13 dbSNP
rs1197386499 16 dbSNP
rs764291677 17 dbSNP
rs1478638830 18 dbSNP
rs181179141 20 dbSNP
rs1479456248 22 dbSNP
rs375919073 23 dbSNP
rs757538538 24 dbSNP
rs1201158476 27 dbSNP
rs1421087646 32 dbSNP
rs1421780383 35 dbSNP
rs765494940 38 dbSNP
rs1365042920 45 dbSNP
rs750747678 46 dbSNP
rs1325594986 52 dbSNP
rs186881499 53 dbSNP
rs1194306478 72 dbSNP
rs1459315500 72 dbSNP
rs780482879 76 dbSNP
rs1308288598 85 dbSNP
rs926706674 87 dbSNP
rs747573508 88 dbSNP
rs1276073112 91 dbSNP
rs1241874042 101 dbSNP
rs1233287638 103 dbSNP
rs755621682 104 dbSNP
rs1334684932 110 dbSNP
rs777386071 111 dbSNP
rs752757544 121 dbSNP
rs1291367218 125 dbSNP
rs748873935 136 dbSNP
rs770571151 137 dbSNP
rs1448538543 141 dbSNP
rs1043893608 149 dbSNP
rs778459047 153 dbSNP
rs1335911938 163 dbSNP
rs1400753057 163 dbSNP
rs745588984 164 dbSNP
rs534464169 171 dbSNP
rs772002368 172 dbSNP
rs1384909632 173 dbSNP
rs1456580855 175 dbSNP
rs1165122347 178 dbSNP
rs768207375 181 dbSNP
rs758393108 182 dbSNP
rs1363303661 186 dbSNP
rs778016863 191 dbSNP
rs892509456 195 dbSNP
rs775551002 196 dbSNP
rs556122650 198 dbSNP
rs760760889 199 dbSNP
rs1044011954 213 dbSNP
rs903497570 214 dbSNP
rs1350190383 215 dbSNP
rs996958436 219 dbSNP
rs773890163 220 dbSNP
rs1309704331 221 dbSNP
rs1339543797 224 dbSNP
rs574266382 226 dbSNP
rs1242136801 233 dbSNP
rs1007747274 236 dbSNP
rs1285476306 238 dbSNP
rs1431100558 239 dbSNP
rs1314073291 241 dbSNP
rs1050004198 244 dbSNP
rs1017953418 254 dbSNP
rs1342053718 254 dbSNP
rs1400111001 266 dbSNP
rs1384324751 268 dbSNP
rs1156981617 272 dbSNP
rs891339985 274 dbSNP
rs1421721312 285 dbSNP
rs1008438923 291 dbSNP
rs531275777 295 dbSNP
rs1349442668 315 dbSNP
rs1387168787 329 dbSNP
rs1303052777 330 dbSNP
rs1329287983 339 dbSNP
rs1486206188 340 dbSNP
rs6065106 350 dbSNP
rs1163200934 352 dbSNP
rs1232519027 358 dbSNP
rs1471982159 359 dbSNP
rs1015692885 364 dbSNP
rs963774132 366 dbSNP
rs1188849700 367 dbSNP
rs1344463886 369 dbSNP
rs1259034863 392 dbSNP
rs747478009 397 dbSNP
rs1353839815 398 dbSNP
rs1290525796 406 dbSNP
rs997769512 415 dbSNP
rs1358193357 417 dbSNP
rs747680095 419 dbSNP
rs1429905750 420 dbSNP
rs377212348 425 dbSNP
rs572532170 425 dbSNP
rs961537873 434 dbSNP
rs951106370 435 dbSNP
rs983084545 437 dbSNP
rs909816243 446 dbSNP
rs140265869 461 dbSNP
rs549477282 462 dbSNP
rs1164252480 472 dbSNP
rs1475358478 475 dbSNP
rs1422062734 476 dbSNP
rs1196499436 482 dbSNP
rs1432951769 482 dbSNP
rs926654040 491 dbSNP
rs1267635890 494 dbSNP
rs1218905754 496 dbSNP
rs756569945 505 dbSNP
rs188876883 508 dbSNP
rs760406263 511 dbSNP
rs1337227714 512 dbSNP
rs766147696 514 dbSNP
rs1166129204 516 dbSNP
rs1369565105 517 dbSNP
rs1458046529 518 dbSNP
rs1294911243 519 dbSNP
rs1388395902 521 dbSNP
rs1056597047 522 dbSNP
rs1341207965 528 dbSNP
rs1298306811 531 dbSNP
rs564854267 533 dbSNP
rs776629101 534 dbSNP
rs1367205104 538 dbSNP
rs1409704116 543 dbSNP
rs1035696472 545 dbSNP
rs960588468 551 dbSNP
rs1296880196 552 dbSNP
rs6101370 553 dbSNP
rs1247327711 558 dbSNP
rs544788415 561 dbSNP
rs560061704 562 dbSNP
rs1188988590 567 dbSNP
rs571731365 570 dbSNP
rs182005523 574 dbSNP
rs1203389195 575 dbSNP
rs945213475 577 dbSNP
rs1250476948 578 dbSNP
rs1456227240 581 dbSNP
rs560882496 582 dbSNP
rs1199181096 583 dbSNP
rs902061047 585 dbSNP
rs867735112 588 dbSNP
rs1463882785 597 dbSNP
rs1217511210 603 dbSNP
rs1186139732 607 dbSNP
rs1275605622 610 dbSNP
rs1389082419 612 dbSNP
rs925060357 617 dbSNP
rs1423887216 630 dbSNP
rs997875782 631 dbSNP
rs1029387768 646 dbSNP
rs6101371 652 dbSNP
rs1405941090 668 dbSNP
rs1174598907 693 dbSNP
rs75484069 696 dbSNP
rs1425266123 699 dbSNP
rs1017228845 700 dbSNP
rs1437500161 706 dbSNP
rs1239751861 709 dbSNP
rs186240598 711 dbSNP
rs1390748317 717 dbSNP
rs1432733492 722 dbSNP
rs1212174114 723 dbSNP
rs1254125037 723 dbSNP
rs1460732394 723 dbSNP
rs1313960598 731 dbSNP
rs1319790060 731 dbSNP
rs200293257 735 dbSNP
rs1239662007 738 dbSNP
rs1248235652 738 dbSNP
rs1447916183 738 dbSNP
rs556291931 738 dbSNP
rs60964912 738 dbSNP
rs755821096 738 dbSNP
rs764215917 739 dbSNP
rs980723841 742 dbSNP
rs1033504856 749 dbSNP
rs960559402 750 dbSNP
rs1157795453 751 dbSNP
rs1417449979 752 dbSNP
rs1229401005 753 dbSNP
rs890812086 757 dbSNP
rs944266180 758 dbSNP
rs1253829670 759 dbSNP
rs1208725432 764 dbSNP
rs1238528806 766 dbSNP
rs1037274799 768 dbSNP
rs1483321490 768 dbSNP
rs897311359 769 dbSNP
rs995665610 775 dbSNP
rs533429497 777 dbSNP
rs74748470 782 dbSNP
rs905903180 783 dbSNP
rs925490222 784 dbSNP
rs1001643983 788 dbSNP
rs1321492721 797 dbSNP
rs1159654614 804 dbSNP
rs1039288558 811 dbSNP
rs901998916 814 dbSNP
rs1036070144 816 dbSNP
rs960056196 822 dbSNP
rs1455443004 829 dbSNP
rs933507539 832 dbSNP
rs1051256028 838 dbSNP
rs1397537960 846 dbSNP
rs992056772 852 dbSNP
rs1298363260 855 dbSNP
rs1020920179 868 dbSNP
rs1301097015 871 dbSNP
rs966528845 884 dbSNP
rs979643553 886 dbSNP
rs925145052 888 dbSNP
rs540350914 910 dbSNP
rs932370808 919 dbSNP
rs4812359 921 dbSNP
rs1004246270 931 dbSNP
rs1191434394 937 dbSNP
rs1487310196 939 dbSNP
rs985241745 944 dbSNP
rs548061480 949 dbSNP
rs566834781 950 dbSNP
rs113760296 955 dbSNP
rs1264016249 955 dbSNP
rs898189322 955 dbSNP
rs75858122 956 dbSNP
rs1002108294 964 dbSNP
rs1033619667 966 dbSNP
rs1278064329 966 dbSNP
rs1322723513 966 dbSNP
rs960505976 966 dbSNP
rs1278328517 969 dbSNP
rs943730712 974 dbSNP
rs992007666 974 dbSNP
rs1349060083 975 dbSNP
rs1294945268 978 dbSNP
rs1228139438 979 dbSNP
rs6101373 980 dbSNP
rs1314410556 982 dbSNP
rs1168439809 986 dbSNP
rs1478794887 987 dbSNP
rs932092798 989 dbSNP
rs1253689571 1004 dbSNP
rs1037243524 1005 dbSNP
rs1265474863 1010 dbSNP
rs897378029 1018 dbSNP
rs1211876151 1019 dbSNP
rs1488974421 1021 dbSNP
rs1257900050 1022 dbSNP
rs1182539103 1024 dbSNP
rs931585376 1029 dbSNP
rs1049015531 1034 dbSNP
rs549686628 1037 dbSNP
rs1320667816 1044 dbSNP
rs1259300238 1053 dbSNP
rs906044119 1055 dbSNP
rs1002011148 1056 dbSNP
rs1302867874 1061 dbSNP
rs1471516361 1062 dbSNP
rs376493075 1064 dbSNP
rs964703069 1073 dbSNP
rs1467093225 1077 dbSNP
rs150382819 1081 dbSNP
rs1425825397 1083 dbSNP
rs895815211 1089 dbSNP
rs923535715 1090 dbSNP
rs138103023 1095 dbSNP
rs1201280227 1097 dbSNP
rs1434045410 1105 dbSNP
rs1173852415 1106 dbSNP
rs1020308019 1108 dbSNP
rs933455012 1108 dbSNP
rs1239257169 1109 dbSNP
rs1200387617 1118 dbSNP
rs966580114 1119 dbSNP
rs71351028 1128 dbSNP
rs1000809647 1134 dbSNP
rs1032563291 1151 dbSNP
rs1352580195 1153 dbSNP
rs556678847 1160 dbSNP
rs898146309 1167 dbSNP
rs1377384320 1169 dbSNP
rs767778892 1173 dbSNP
rs1394290760 1187 dbSNP
rs1400147070 1199 dbSNP
rs537986567 1201 dbSNP
rs912351734 1210 dbSNP
rs1001888824 1213 dbSNP
rs965106902 1223 dbSNP
rs1233885105 1225 dbSNP
rs1187442914 1227 dbSNP
rs1218044319 1235 dbSNP
rs1441239769 1237 dbSNP
rs538700167 1238 dbSNP
rs1200490300 1239 dbSNP
rs553614883 1249 dbSNP
rs571692015 1261 dbSNP
rs1283371004 1263 dbSNP
rs542256684 1265 dbSNP
rs918270106 1270 dbSNP
rs1346578923 1275 dbSNP
rs1354146356 1292 dbSNP
rs1283444276 1300 dbSNP
rs1242495491 1301 dbSNP
rs931527008 1302 dbSNP
rs1251259534 1304 dbSNP
rs1048667919 1307 dbSNP
rs1415410628 1312 dbSNP
rs1276363854 1314 dbSNP
rs927433955 1322 dbSNP
rs937561792 1323 dbSNP
rs6016004 1325 dbSNP
rs575891459 1332 dbSNP
rs1163081812 1338 dbSNP
rs543366234 1343 dbSNP
rs1247126777 1348 dbSNP
rs895872029 1352 dbSNP
rs536820842 1353 dbSNP
rs1189440983 1354 dbSNP
rs1260499898 1354 dbSNP
rs1477172571 1354 dbSNP
rs1488442876 1362 dbSNP
rs1032856010 1364 dbSNP
rs1450190230 1367 dbSNP
rs548772022 1369 dbSNP
rs964652584 1372 dbSNP
rs1218006666 1378 dbSNP
rs974721432 1380 dbSNP
rs1276438688 1381 dbSNP
rs1402045808 1381 dbSNP
rs923484961 1381 dbSNP
rs1323166506 1382 dbSNP
rs190701127 1384 dbSNP
rs544238390 1384 dbSNP
rs908022912 1384 dbSNP
rs954955544 1384 dbSNP
rs1195266991 1395 dbSNP
rs1010329913 1396 dbSNP
rs1041718799 1399 dbSNP
rs1196307428 1400 dbSNP
rs1368949094 1400 dbSNP
rs570280329 1404 dbSNP
rs1316031647 1405 dbSNP
rs537501558 1405 dbSNP
rs1259951727 1408 dbSNP
rs1352052125 1421 dbSNP
rs1362766355 1424 dbSNP
rs1274419208 1429 dbSNP
rs1032284705 1432 dbSNP
rs1293511886 1433 dbSNP
rs1366498188 1436 dbSNP
rs772312060 1448 dbSNP
rs558784653 1452 dbSNP
rs1006712743 1453 dbSNP
rs937626967 1459 dbSNP
rs1166549742 1461 dbSNP
rs1173467243 1464 dbSNP
rs1019408772 1466 dbSNP
rs896194395 1471 dbSNP
rs965075167 1475 dbSNP
rs773695341 1476 dbSNP
rs1253360847 1477 dbSNP
rs972468787 1482 dbSNP
rs570820407 1483 dbSNP
rs952434308 1488 dbSNP
rs1308136615 1491 dbSNP
rs1278085514 1493 dbSNP
rs984775121 1504 dbSNP
rs1217654993 1507 dbSNP
rs1347457717 1508 dbSNP
rs1437637489 1513 dbSNP
rs1304467290 1514 dbSNP
rs1446449718 1516 dbSNP
rs1375169834 1519 dbSNP
rs1252327354 1522 dbSNP
rs1333942007 1531 dbSNP
rs909238030 1534 dbSNP
rs1443649237 1537 dbSNP
rs1465237651 1538 dbSNP
rs749770871 1539 dbSNP
rs1173405733 1543 dbSNP
rs1415706124 1545 dbSNP
rs927599928 1552 dbSNP
rs1395270146 1558 dbSNP
rs1388465354 1561 dbSNP
rs937595043 1565 dbSNP
rs143715787 1566 dbSNP
rs917442464 1567 dbSNP
rs1416202812 1574 dbSNP
rs145811351 1583 dbSNP
rs1236951327 1586 dbSNP
rs1032353882 1589 dbSNP
rs779427424 1595 dbSNP
rs1041855111 1598 dbSNP
rs996254645 1599 dbSNP
rs1390024978 1601 dbSNP
rs549354407 1603 dbSNP
rs1140732 1604 dbSNP
rs904504829 1610 dbSNP
rs936056145 1611 dbSNP
rs954738262 1612 dbSNP
rs1054104704 1623 dbSNP
rs1309658809 1626 dbSNP
rs889671140 1629 dbSNP
rs1006779726 1630 dbSNP
rs1301639763 1636 dbSNP
rs1324212241 1647 dbSNP
rs1429383447 1655 dbSNP
rs567676128 1663 dbSNP
rs182600714 1664 dbSNP
rs367638483 1672 dbSNP
rs1015610561 1699 dbSNP
rs1297185130 1708 dbSNP
rs1417549772 1716 dbSNP
rs1362182824 1718 dbSNP
rs1357972499 1720 dbSNP
rs550231100 1731 dbSNP
rs1159622394 1734 dbSNP
rs138657186 1734 dbSNP
rs1183525787 1736 dbSNP
rs538896959 1740 dbSNP
rs1216127851 1743 dbSNP
rs993858143 1755 dbSNP
rs746348386 1771 dbSNP
rs1329592310 1772 dbSNP
rs1210591303 1782 dbSNP
rs1216905212 1787 dbSNP
rs1246086341 1789 dbSNP
rs1321502447 1791 dbSNP
rs1311132531 1798 dbSNP
rs1235737381 1799 dbSNP
rs1298383707 1801 dbSNP
rs1355533934 1812 dbSNP
rs1277061252 1814 dbSNP
rs1386613541 1816 dbSNP
rs41276988 1816 dbSNP
rs919637669 1818 dbSNP
rs565485783 1819 dbSNP
rs535950467 1821 dbSNP
rs371836516 1822 dbSNP
rs990605065 1823 dbSNP
rs1166831219 1833 dbSNP
rs917578387 1841 dbSNP
rs112208120 1850 dbSNP
rs60435168 1850 dbSNP
rs778161295 1850 dbSNP
rs151113715 1852 dbSNP
rs200316735 1853 dbSNP
rs80020539 1854 dbSNP
rs201285664 1855 dbSNP
rs1476901318 1859 dbSNP
rs1042276641 1864 dbSNP
rs993094316 1866 dbSNP
rs1413245709 1868 dbSNP
rs917411112 1869 dbSNP
rs775963186 1873 dbSNP
rs201834011 1878 dbSNP
rs902435178 1883 dbSNP
rs946221280 1891 dbSNP
rs1264123638 1895 dbSNP
rs1216062286 1901 dbSNP
rs1157648670 1911 dbSNP
rs977502520 1920 dbSNP
rs1384809824 1922 dbSNP
rs1399644710 1926 dbSNP
rs1327682675 1933 dbSNP
rs936476418 1936 dbSNP
rs770730836 1942 dbSNP
rs1365190884 1943 dbSNP
rs1441398723 1947 dbSNP
rs926093465 1950 dbSNP
rs185940389 1951 dbSNP
rs1053547208 1961 dbSNP
rs554110313 1963 dbSNP
rs1050425029 1964 dbSNP
rs889129192 1969 dbSNP
rs142756264 1970 dbSNP
rs572275178 1971 dbSNP
rs1030396278 1975 dbSNP
rs1432860448 1976 dbSNP
rs901009051 1979 dbSNP
rs993994020 1987 dbSNP
rs1195833083 1991 dbSNP
rs1025904236 1992 dbSNP
rs1238029379 1996 dbSNP
rs1197313519 2003 dbSNP
rs759122025 2012 dbSNP
rs1005305722 2018 dbSNP
rs1015143781 2021 dbSNP
rs1232053895 2026 dbSNP
rs963968980 2029 dbSNP
rs1266189452 2039 dbSNP
rs1305221859 2042 dbSNP
rs1349822266 2055 dbSNP
rs1201113175 2059 dbSNP
rs868422287 2060 dbSNP
rs41276990 2064 dbSNP
rs1440767022 2066 dbSNP
rs1393135588 2067 dbSNP
rs1398687589 2068 dbSNP
rs1298866795 2071 dbSNP
rs866118826 2072 dbSNP
rs765223024 2073 dbSNP
rs1454932125 2078 dbSNP
rs1380133226 2079 dbSNP
rs1177284405 2081 dbSNP
rs1473788293 2083 dbSNP
rs958891289 2085 dbSNP
rs1251901130 2087 dbSNP
rs1199354145 2093 dbSNP
rs990552805 2097 dbSNP
rs775264706 2102 dbSNP
rs1234645867 2109 dbSNP
rs558609562 2112 dbSNP
rs1352709999 2114 dbSNP
rs993063105 2115 dbSNP
rs1363731187 2117 dbSNP
rs1306859284 2120 dbSNP
rs576957273 2128 dbSNP
rs1241069108 2136 dbSNP
rs1024603435 2142 dbSNP
rs1311960473 2149 dbSNP
rs775569502 2154 dbSNP
rs1373719009 2155 dbSNP
rs1314986536 2156 dbSNP
rs923668723 2162 dbSNP
rs1360270712 2173 dbSNP
rs113228049 2174 dbSNP
rs1471380964 2176 dbSNP
rs559594378 2181 dbSNP
rs1364814259 2185 dbSNP
rs1403812453 2190 dbSNP
rs1432297704 2192 dbSNP
rs926132320 2206 dbSNP
rs527747479 2207 dbSNP
rs1052112 2208 dbSNP
rs1259088183 2211 dbSNP
rs1211117158 2213 dbSNP
rs936071030 2220 dbSNP
rs986647296 2226 dbSNP
rs554304872 2230 dbSNP
rs944747320 2231 dbSNP
rs1411464608 2233 dbSNP
rs1351134544 2235 dbSNP
rs767762558 2238 dbSNP
rs1304517217 2239 dbSNP
rs922487502 2241 dbSNP
rs1242585050 2243 dbSNP
rs1353633741 2246 dbSNP
rs890544075 2249 dbSNP
rs1415504278 2256 dbSNP
rs1340076841 2263 dbSNP
rs1322027028 2267 dbSNP
rs543161450 2271 dbSNP
rs1316507359 2272 dbSNP
rs1335112003 2272 dbSNP
rs1402745612 2277 dbSNP
rs1233954336 2279 dbSNP
rs1386207601 2284 dbSNP
rs1004847823 2286 dbSNP
rs1276510953 2288 dbSNP
rs1419360939 2291 dbSNP
rs1015338661 2292 dbSNP
rs899200718 2302 dbSNP
rs1239933380 2307 dbSNP
rs750669100 2312 dbSNP
rs1447348181 2319 dbSNP
rs1046872383 2320 dbSNP
rs1034627259 2335 dbSNP
rs1210187716 2343 dbSNP
rs752172327 2351 dbSNP
rs888292540 2352 dbSNP
rs1005290233 2356 dbSNP
rs1233907723 2357 dbSNP
rs1014437392 2364 dbSNP
rs573471801 2366 dbSNP
rs970879755 2368 dbSNP
rs1250321052 2372 dbSNP
rs977901747 2374 dbSNP
rs894144907 2375 dbSNP
rs1439188245 2377 dbSNP
rs1013964327 2387 dbSNP
rs1434112557 2393 dbSNP
rs1166289493 2401 dbSNP
rs1464595356 2401 dbSNP
rs923588388 2418 dbSNP
rs1201702320 2420 dbSNP
rs957723778 2420 dbSNP
rs1245797867 2424 dbSNP
rs989333813 2436 dbSNP
rs561240625 2460 dbSNP
rs201975059 2469 dbSNP
rs1253489825 2470 dbSNP
rs199875415 2472 dbSNP
rs796552455 2472 dbSNP
rs1437312897 2474 dbSNP
rs1023985488 2475 dbSNP
rs1172433090 2475 dbSNP
rs1216524808 2482 dbSNP
rs1390411232 2483 dbSNP
rs746266570 2486 dbSNP
rs183220779 2494 dbSNP
rs931782692 2494 dbSNP
rs1327146287 2495 dbSNP
rs756330904 2496 dbSNP
rs911769611 2498 dbSNP
rs940765743 2499 dbSNP
rs1395557491 2502 dbSNP
rs187660553 2503 dbSNP
rs1171381252 2504 dbSNP
rs1423952335 2504 dbSNP
rs1455411750 2508 dbSNP
rs1325469437 2517 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' accacGUUUUCAUUAACACCAAAAa 5'
               ||||||  :|| ||||||| 
Target 5' aagauCAAAAGGUGUU-UGGUUUU- 3'
3 - 25
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000373874.2 | 3UTR | AUAAGAUCAAAAGGUGUUUGGUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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