miRTarBase - #MIRT666172


—
pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SNX27   
Synonyms MRT1, MY014
Description sorting nexin family member 27
Transcript NM_030918   
Expression
Putative miRNA Targets on SNX27
3'UTR of SNX27
(miRNA target sites are highlighted)		 
>SNX27|NM_030918|3'UTR
   1 TTAGAGACTGATTATCTCATGTGAGCCAGGACATTCTTCCAGCAAGGTTGGCCTCTGGATGGTGAACGGGCTGTGCAAAA
  81 AAGCCCTGCTTCTTCCCTTGTCTAGAGGGTGGACATTGGCTACAGGCTCTTCCATCTCTCATGACTTCATGGACCCTCCT
 161 CTGCCAGTTTTTTAAATCAGATCACCCTCCATGTTGTTCCTGACCCACAGGGGAAGCTGTCCTCAGTTGTAGCCGTCTTG
 241 ACTGGATGAGTCCTGGCAGTCTTTCTAGGCGAACCAAGAATGTTTGTGTGAGGGAAGGTGTTTGCTGTTGCTTTACTGCT
 321 GTCTGTATGTGCCAGTGCTGGAACAGAATTTGGAAGATTCTGAATAATTAGTTACTTATTCTCAAAGAAAATCTTTGAAA
 401 GAATCAGGAGGTCAAGTCAAGAACATGAAAATTTATATTTTAGTACAGTAGAAAGAACATTGGGCTCTGGGAATTTTATC
 481 TGGGTTTTCTCCTGGCTTTTTTTTCCCTCTGTGTAATTTTGGGTAAATCAGCCTCCCTAGCTTTCAGTTTTCTCTTCTGT
 561 GAAACAGGAAGACTGAACCACGTAATTAATATCCAAGGTCCCTTCCGGCTCTAAAAGGCTATGATTCTAGATGAGAAGTT
 641 ATATCAAGAAAGATGTGGCCAATCAGATTGAGTCATCCAGGCATACCTTTTTAGCTTCTGTTTGTGGAGTTGTCTCCAGA
 721 TAAGAGGAGATGTGCCTTCCCAATAACTCTTTTTTTTTTTCCTTTCAGAACATTTTCCAGATGGCGAGGTCACAGCAGAG
 801 AGATGTGGCCACCTAGCCTTTCCTTATCCCCTTCCCTTCCCTTCACCCCCATCCTCTTACTCCTTTCATGTCCCATTTCA
 881 GACAGAGTAACCATTAACAAAAAAGAAGAGAAAAAGTTAAAGTCGTTATATTCAAAAGCCCTAAACTAAATATTATTAAT
 961 AACCCCCTCTGAATTTCATGTCTCTGGAATTGAGGTGGTAGTGAACAGCAGATCGGTCAGCACCAGAAGTCAACTGAGTT
1041 AAGGCAGGAAAAGAAATAAGCCCAACCAACTTGCCAAAGGTATCTTTGTCCTTTCACCTGGGCCTCATACCAACAGCCTC
1121 TCCTTGTACTATATTTTTAAAACTGGAACTATGAACTTCATCCATTTGCACTGTTCAGACATATATATGTATGTATGTAA
1201 AAATTATATATACACAAATTAGCTGCACGTATATACATATATATATTTCTTTTTAAATTTCATATTGATGGCAGTACCTT
1281 TTTTAGCTTGTGTTTTTACACACCTTTCACTAGAATCCATGACCTCCCTCGTGCTCTCTTTCTTTTGAAACAAACTTTAA
1361 AAAGGAAAAAAAAGCATTTTACAGGGAAAAATACCTCTCCTCATGAAGGACTTGAAAAGTTTACAACCTGCTTGGATTTT
1441 TGCCCCTTTTTTTGTATTGAGTATAGATTCCGGCTCATGGGTTGCCATAGAGTCTAGGAACAAGGAGTATAGTTTCTTTA
1521 TCTTCCAAGAGGGTGCTGGGGAGGAGAAAGAGGTGTGTTTCTCAAGGTTAACAGGCTGTAGTTCTGCAGGGAGAGCCTGA
1601 AGTCCTGGTATGGGCTCTTGATTCTGTGACAATTTTTTTGATCCATCTATTTCTCTCACTCCTGGCTTTCTAGCCACATT
1681 CTGCACCTCCTTCCTGCTTTCCTAGAGCCTCGGTATGCTTTCCCTCAACCGACCCTGGCTCAGGAGGTTGATGCCATGGG
1761 AACCTGAACCTGAAACACTTCATGGTAGTAATTTCCTGTTTTCCTTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAG
1841 ACAGGGTCTTACTCTGTCGCCCAGACTGGAATGTGGTGGCATGAACATAGCTCACTGTTACCTTGAATTCTGGGCTCAGG
1921 TGATCCTTCCGCCTCACCCTCCTGAGTAGCTGGGACTACAGGTGTGCACCACCACACCTGGCTAATTCTTCTTAAAATTT
2001 TTTTGTAGAGACAGGGTCTCACTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAGGTGATCCTCTTGTCTCAGCCT
2081 CCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGTCCTTCCCTGCCTTTTTTGCAGCAGGGATAGTACTCAGGACCAG
2161 AGTTAAGCTGATACCTTAGGCACACAGGTTGGACTTACATAGAGGAAAGAAAGCAAGAAATGCCCTATGTACATGAGGTT
2241 TTACCTCCTCCATTCCTGACCAATAACCACCCATAACTACGGCATTCTCTGTGACTTCCTTAAACAGCAGTGATGGGAAG
2321 GGATCCAATAGTATCTTCAAGGCCTTGGGGAAACTTGCAGTGGGTCAGTGGTCTGTGCCAACCAAACGATAGCCCCATCC
2401 AAGCCAGCTGAGAACCTAGGAAGGAGTAGTAGGAATATGGTTGATTAGATTGGATCTCCCAAGTTTTAATTGAAAGGAGA
2481 CTGAACGAAAACCTTTCTGCTTTCTGTCCGTTAAAGAGCTCCTCATCTGATCTTGCAGCTAGACCCTTTGAGACTTAAGA
2561 GCTGCATCCCAGGATCAGAAGCCAGGGCTAATTGGGGTAGGACAATATTCCCAGCCCCTAAGCTCTGTAGATAATGCATA
2641 AGAAGCACCAAGTCAGGCTCAGATGCAACTAAAACACATCTTTGAGCCTTTTCTTTTTCCCTTCTCCCCTTTCTAAACAA
2721 AAACCTTCCTAGGATGGCATCTTTTGCTCTAACTGGGAGACAGTCATAATTGGTTGTAGTCAATTCTACTAAGCAGTGTT
2801 GGGGTGGTTGGAAAGTCTCTTTTTTGTAATTTGTTTTTGCAAATCATTGTGAGGCCACTTTTTCTTTCTTTCTTTCTTTC
2881 TTTCTTTCTTTCTTTCTTTCTTTCGTTCTTTCGTTCTTTCGTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTTGC
2961 TTTCCTTCTTTCATCTCTTTTTTGTAATTTGTTGTTGCAAATCATTGTGAGGCCACTTTTCTTTCCCCTTCCTTCCTTCC
3041 TTTTTTTCTGTTTTTTTTTTTTTTTTTTCCCAGAGTCTTGCTCTGTCGCCCAGGTTGGAGTGCAGTGGCACGATCTCGGC
3121 TCACTGCACCCTCTGCCTCTTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATACACC
3201 ACCACGCCCCACTAATTTTTTGTATTTTTGGTAGGGCGGGGTTTCACCATGATGGCCAGGTTGGTTTTGAACTCCTGACC
3281 TCAAGTAATCTGCCCACCTCGGCCTCCCAAAGTGCTAGGATTACAGGAGTGAGCCACTGCGCCTGGCCCACTTTTCTTTC
3361 TTTCCTTCTTATTTTGTTATGCTGGCAGCCATTTGCCCCTGCATGGTATGGGATCAAAGAGGACAGCCTTTCCTCCCTCA
3441 CCTTCTCCAAATCTAGGTGAAATCACAGAGTACAAAACGTGAGAATGCTGAATGTGTAAAGTTGCAGAGGGATCCCTAAT
3521 TTGAAGACTTTGACACAGAACTAACTTCTTTTGACTTAAATGAATTTAAAATGAGCCAAAGGACCCTGAAAAGAAGACAT
3601 GTTGATTTCCCACTCCTAGATGCTAAAGAGACTTGGCACCAGCTTTGTTCAAACTGTAAAAATAGCAATTTGCCCCTACT
3681 CGCTCAGAGTGGGACAGTAGTGAACAGAGCTGGGATTCCATGCGACAGCTTGAATGCTGACCTTCAGACATGAGACATAG
3761 GGATTTGGAGGCCCCTTAGAATGGGTAGATGGTGTTATGTTCCCTTTCTGGCATAGCATTCACTTGGTGCTTTGGAGATT
3841 AGGTGAGGGCCCTATAGGTAGTTGGCCTGTTGGCAGAATTTATTTAGGAACAGCCCTTTTGAAAGTGTCCCAGTAACAAC
3921 GCACCCAGCTGCAGCAAGGAGGTGGGGAAGGAGGGCACCCCAAAGGACAGCGCCTTCTTCTCTTCCACCCATGCACGGCC
4001 TTGGGTGATGGAGGCGGGTTCCCTGTGGCTGCGTGGATCCCATAGGATCAAGCCCTTCTTTGCATGAAGCAGTGTTGTGA
4081 CTCTTCTCTCTCCCCTTCCTCTGCACTTCCTTTCTGTAATCCCTACTGTTCTTCTTAGTCCCAGCTTCTGCCCAGGGAGG
4161 CTTCTACCCAGACTTCTTTTGCAATTTGTCCCTGGGAAGAGGGGGTCTCCCAGTGCCCCCAGCTTCATCCCAGCAGAACC
4241 AGCAGGATCCTCCTGGTCTCTCACTGGCCTTCCTCCACACTTGGTTTCTATCCTCAGGGGTAGAAGCTCAGAGCTTTTTA
4321 TGGCCCAGGAGAAAATGTAGACCCTGAGAAACCTGTCCCTGCAGAAAGGTTCCCTTGGGCCATGCTTTGGGCCCTCTGCT
4401 CTTTATATGTTTATTCTATTCTCCATTTTTCCACCCCGTCCTTACCCTAGGCCTAAACACAGGTACAGATATGTGCATGC
4481 TCAGGGCAGCTCCTAGGCCTGGACTGAGCTCTCAGGGGGGAATTAGATAAATATTCCAACATCCTCATGCCTGGCCCATT
4561 TAGTTTCATCCTTTAGTTACCCAGGCCAGTAGCTTTGGGTTATCCCTTCCTGTAGCTCCAAACCCAGCACTTGGAGCAGC
4641 AAAATAGGGCACTGACAGGAGATGAAACTCTCTCCTATCTCAGAATTTGCCAACTTCTGGGCTGGGCTCCTAGGAGGTAG
4721 TTTTCTTGAAGGGGACTGCATCCTAGTTGACCTGAATTTTCCAGACCAGGAGGGACTGCTGTGCTCTCCCTTCTCGCCAT
4801 CATACTGTTTGGCTAGATTCATTCAGCAGTAGAAGCTGTTTGATCTGTTGACCCCAGCATACTGCTGTTTCTTCACCAGC
4881 TTCATTGTGTCACAGTAGCTTCCTTTGGGAGGATGATGTGATAGAACACTCAGAGAGAGGGAGGGAGAAGAGAGATAGTG
4961 GGTATGCTTCTCTAGCTCCCCATCTTCCAGGTCCACCTCTTGACTTCCTGTTCCCCTAAACCTGAGCACATCACGCCAGG
5041 CCTCTTTGCTGCCAGGACAGCATCAGCTCACTCCTCAGCAATAATCTAGGGTATGTGGGAAGGTCAGGGCTGTGGTAAGG
5121 AATAGAATCAAAGAGGGGAGTGATACGGGGTGGGGGCACTTGGCCGCCTGCTAAACTTGGACATTAATTTTATATCATGA
5201 CCCCCTTTTAAGCCAGTGAGCTGGGCTTCAGTTTTTCCCAGGCCATGCACATTTAATTTATTTCAGAGAAACTCTAATTG
5281 TATTTTCACTGCAGTATCTTGTATTTTTTATTTGTGATTTAAGAAATGTGAAGAGAAAATACACAGACACAATAATGGCT
5361 AACATTGTTTCTTTCATTCCTTGTTCTAGAGCTAACCACTCTAAAATTGTTTGGTAATGTCACTTAGTGTAATTAATTGT
5441 AACATATTCTTTTAAATAAATTGATTTATTGATCAAACACTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||| ||:|   ||||||| 
Target 5' tgATCCTCTTGTCTCAGCCTc 3'
 2061 - 2081 156.00 -19.60
2 
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' cgATTCTCCTGCCTCAGCCTc 3'
 3151 - 3171 156.00 -17.50
3 
miRNA  3' gguagaaggaAGUCGGAg 5'
                    ||||||| 
Target 5' tttgggtaaaTCAGCCTc 3'
 518 - 535 140.00 -12.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1170176 1 ClinVar
COSN20631194 8 COSMIC
COSN30186042 19 COSMIC
COSN30158555 22 COSMIC
COSN30475458 40 COSMIC
COSN31601141 45 COSMIC
COSN30466241 56 COSMIC
COSN18745046 83 COSMIC
COSN13470189 90 COSMIC
COSN9363252 92 COSMIC
COSN30513069 98 COSMIC
COSN30473685 108 COSMIC
COSN30448762 121 COSMIC
COSN22542889 179 COSMIC
COSN20576525 546 COSMIC
COSN24386516 607 COSMIC
COSN31482220 612 COSMIC
COSN23337408 634 COSMIC
COSN20809311 649 COSMIC
COSN1089384 761 COSMIC
COSN4894391 786 COSMIC
COSN28162471 787 COSMIC
COSN28162040 813 COSMIC
COSN28162041 814 COSMIC
COSN31529584 829 COSMIC
COSN1406052 876 COSMIC
COSN31584669 923 COSMIC
COSN20073731 964 COSMIC
COSN28871053 1016 COSMIC
COSN26648198 1092 COSMIC
COSN17183324 1230 COSMIC
COSN31518659 1332 COSMIC
COSN31484381 1343 COSMIC
COSN31572732 1374 COSMIC
COSN26574504 1447 COSMIC
COSN8642335 1468 COSMIC
COSN31576170 1505 COSMIC
COSN8636193 1565 COSMIC
COSN7177357 1847 COSMIC
COSN32064390 1865 COSMIC
COSN22662853 1932 COSMIC
COSN28202092 2882 COSMIC
COSN26070424 2884 COSMIC
COSN30073328 2890 COSMIC
COSN20284175 2898 COSMIC
COSN27218026 2905 COSMIC
COSN32061720 2906 COSMIC
COSN9023571 2914 COSMIC
COSN23943961 2922 COSMIC
COSN29533742 2929 COSMIC
COSN25822153 2995 COSMIC
COSN32061081 3065 COSMIC
COSN32123675 3153 COSMIC
COSN8642336 3291 COSMIC
COSN31778013 3564 COSMIC
COSN26224196 3918 COSMIC
COSN28631385 3921 COSMIC
COSN31545716 3923 COSMIC
COSN31530938 3977 COSMIC
COSN31557334 4064 COSMIC
COSN30165172 4066 COSMIC
COSN31480571 4067 COSMIC
COSN31546755 4187 COSMIC
COSN31483470 4296 COSMIC
COSN31572278 4520 COSMIC
COSN31533593 4573 COSMIC
COSN21126379 4586 COSMIC
COSN20638067 4685 COSMIC
COSN31578762 4859 COSMIC
COSN28234508 4903 COSMIC
COSN31545741 4998 COSMIC
COSN31543123 5041 COSMIC
COSN8636194 5098 COSMIC
COSN30169862 5230 COSMIC
COSN1406054 5239 COSMIC
COSN15923014 5259 COSMIC
COSN8636195 5317 COSMIC
COSN31491088 5402 COSMIC
COSN31535464 5479 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs143574605 1 dbSNP
rs756293705 1 dbSNP
rs1425644869 3 dbSNP
rs1374683124 9 dbSNP
rs749868798 15 dbSNP
rs762461355 17 dbSNP
rs777663801 19 dbSNP
rs751277274 20 dbSNP
rs755263305 22 dbSNP
rs1458676125 25 dbSNP
rs1462156157 27 dbSNP
rs1020410780 29 dbSNP
rs781653869 33 dbSNP
rs367996078 36 dbSNP
rs1251418759 37 dbSNP
rs372276476 40 dbSNP
rs971586344 41 dbSNP
rs749326686 43 dbSNP
rs1423991800 48 dbSNP
rs549508145 49 dbSNP
rs149149190 59 dbSNP
rs1224487862 64 dbSNP
rs905902255 68 dbSNP
rs538284320 69 dbSNP
rs1242595830 73 dbSNP
rs558510655 77 dbSNP
rs1337462934 82 dbSNP
rs1307094386 84 dbSNP
rs747027217 87 dbSNP
rs375174450 91 dbSNP
rs1368237379 96 dbSNP
rs896416325 104 dbSNP
rs1013479047 110 dbSNP
rs974132143 111 dbSNP
rs1424872589 115 dbSNP
rs1456656668 116 dbSNP
rs1165365480 124 dbSNP
rs867419214 133 dbSNP
rs1161821694 137 dbSNP
rs1391670964 141 dbSNP
rs1455809862 146 dbSNP
rs919981535 150 dbSNP
rs1465348839 151 dbSNP
rs1329365216 155 dbSNP
rs930063697 160 dbSNP
rs1047557695 164 dbSNP
rs775027225 168 dbSNP
rs1200478817 174 dbSNP
rs1490244317 177 dbSNP
rs1266499065 181 dbSNP
rs907718016 182 dbSNP
rs534939041 187 dbSNP
rs1207782002 192 dbSNP
rs1352771268 195 dbSNP
rs1261194106 199 dbSNP
rs776971241 206 dbSNP
rs1326514091 209 dbSNP
rs1284626585 212 dbSNP
rs944558099 222 dbSNP
rs1040676255 227 dbSNP
rs900444342 232 dbSNP
rs554856156 235 dbSNP
rs1386353361 236 dbSNP
rs1006414813 237 dbSNP
rs1054146736 238 dbSNP
rs574693530 243 dbSNP
rs1177244772 251 dbSNP
rs181343880 254 dbSNP
rs1020023741 271 dbSNP
rs558327774 272 dbSNP
rs1242289919 278 dbSNP
rs1267019560 290 dbSNP
rs563014139 294 dbSNP
rs971537311 308 dbSNP
rs1356582546 318 dbSNP
rs1003068506 321 dbSNP
rs1197666560 326 dbSNP
rs1035003955 328 dbSNP
rs1208087724 345 dbSNP
rs878916865 356 dbSNP
rs1463483515 357 dbSNP
rs974394884 362 dbSNP
rs1029931254 366 dbSNP
rs1343881247 368 dbSNP
rs959001994 372 dbSNP
rs1458755873 375 dbSNP
rs1327439654 378 dbSNP
rs974456568 380 dbSNP
rs919929568 388 dbSNP
rs1198738218 405 dbSNP
rs989044654 423 dbSNP
rs1337488850 424 dbSNP
rs756645042 435 dbSNP
rs1589433 436 dbSNP
rs1169914396 437 dbSNP
rs1475855527 439 dbSNP
rs947577997 444 dbSNP
rs1369450284 447 dbSNP
rs761867291 461 dbSNP
rs927348202 463 dbSNP
rs912673003 465 dbSNP
rs545104602 473 dbSNP
rs565295209 484 dbSNP
rs1275869093 485 dbSNP
rs1302368794 486 dbSNP
rs1401350123 497 dbSNP
rs867717663 504 dbSNP
rs1057170343 505 dbSNP
rs1297333472 510 dbSNP
rs112772149 512 dbSNP
rs1314568965 513 dbSNP
rs534165386 523 dbSNP
rs931920730 528 dbSNP
rs1316302976 530 dbSNP
rs1447911336 541 dbSNP
rs1054494238 542 dbSNP
rs867153463 547 dbSNP
rs1338831563 570 dbSNP
rs1330969080 573 dbSNP
rs576369570 578 dbSNP
rs1217620515 582 dbSNP
rs1167750367 583 dbSNP
rs949333563 591 dbSNP
rs1402506265 592 dbSNP
rs1386826686 604 dbSNP
rs143217216 607 dbSNP
rs1041432118 608 dbSNP
rs906991774 622 dbSNP
rs1183266971 623 dbSNP
rs1003425735 630 dbSNP
rs1273406929 637 dbSNP
rs1275846039 640 dbSNP
rs1203495815 641 dbSNP
rs1319557113 642 dbSNP
rs1034542698 643 dbSNP
rs894682545 646 dbSNP
rs1354776226 648 dbSNP
rs1281362465 658 dbSNP
rs995783168 662 dbSNP
rs1350134912 668 dbSNP
rs1306446984 669 dbSNP
rs1027276207 677 dbSNP
rs1367280227 679 dbSNP
rs1006043016 680 dbSNP
rs1404700357 683 dbSNP
rs561239837 684 dbSNP
rs1411465458 691 dbSNP
rs1482546264 697 dbSNP
rs1159821184 701 dbSNP
rs1016023914 702 dbSNP
rs1472612534 702 dbSNP
rs530279691 721 dbSNP
rs1406457624 722 dbSNP
rs1464919945 724 dbSNP
rs549941550 725 dbSNP
rs768314150 732 dbSNP
rs1490735965 733 dbSNP
rs1444423875 735 dbSNP
rs900281325 739 dbSNP
rs776446327 742 dbSNP
rs1019679290 744 dbSNP
rs1221217941 746 dbSNP
rs749125243 747 dbSNP
rs1217760927 748 dbSNP
rs745946161 750 dbSNP
rs771117157 750 dbSNP
rs774448915 750 dbSNP
rs954395409 750 dbSNP
rs1285438382 751 dbSNP
rs989507580 753 dbSNP
rs1020516642 761 dbSNP
rs1193348395 761 dbSNP
rs1348086837 761 dbSNP
rs1324648671 762 dbSNP
rs1457687461 763 dbSNP
rs1414407741 766 dbSNP
rs1198441965 767 dbSNP
rs1256673438 769 dbSNP
rs1156230928 771 dbSNP
rs1440097010 772 dbSNP
rs1204582982 773 dbSNP
rs1402578485 779 dbSNP
rs965506493 781 dbSNP
rs978937151 785 dbSNP
rs1191011195 786 dbSNP
rs765970268 787 dbSNP
rs1201061741 791 dbSNP
rs747898830 798 dbSNP
rs1477349474 805 dbSNP
rs1168317084 807 dbSNP
rs921795417 811 dbSNP
rs1410518310 817 dbSNP
rs1464837373 819 dbSNP
rs199982887 823 dbSNP
rs1349308727 824 dbSNP
rs772107789 829 dbSNP
rs990022467 829 dbSNP
rs1218595747 832 dbSNP
rs914515324 836 dbSNP
rs1217662679 841 dbSNP
rs945703380 842 dbSNP
rs1305139398 845 dbSNP
rs1346424904 846 dbSNP
rs1218374075 847 dbSNP
rs1276755937 849 dbSNP
rs1365293265 850 dbSNP
rs1041378020 855 dbSNP
rs1435726771 860 dbSNP
rs367550592 861 dbSNP
rs906923655 864 dbSNP
rs753592676 868 dbSNP
rs1056335547 871 dbSNP
rs894637922 872 dbSNP
rs569685791 874 dbSNP
rs1309993773 876 dbSNP
rs1174973030 881 dbSNP
rs1431082561 891 dbSNP
rs1234804929 903 dbSNP
rs1257036873 904 dbSNP
rs1189538930 906 dbSNP
rs1353659932 911 dbSNP
rs1246677218 913 dbSNP
rs1205686526 917 dbSNP
rs113128393 919 dbSNP
rs146479109 919 dbSNP
rs1255469877 923 dbSNP
rs996119480 926 dbSNP
rs754555053 927 dbSNP
rs1276522206 929 dbSNP
rs1048139079 930 dbSNP
rs1190897016 944 dbSNP
rs1295366637 957 dbSNP
rs1397690047 964 dbSNP
rs886373734 967 dbSNP
rs1301750683 985 dbSNP
rs148061480 991 dbSNP
rs1027225604 1004 dbSNP
rs1265341502 1005 dbSNP
rs189604143 1015 dbSNP
rs1176880587 1016 dbSNP
rs1037501859 1031 dbSNP
rs1004190069 1060 dbSNP
rs1424895182 1066 dbSNP
rs1255559732 1068 dbSNP
rs1019626902 1075 dbSNP
rs1180126221 1078 dbSNP
rs1481753181 1080 dbSNP
rs1252756856 1085 dbSNP
rs1204661377 1103 dbSNP
rs1341254616 1105 dbSNP
rs1419040668 1110 dbSNP
rs200636393 1114 dbSNP
rs995917270 1116 dbSNP
rs965809307 1118 dbSNP
rs1051457634 1127 dbSNP
rs1311408320 1129 dbSNP
rs975514887 1152 dbSNP
rs543334162 1172 dbSNP
rs752953549 1182 dbSNP
rs1165364200 1186 dbSNP
rs1365062982 1186 dbSNP
rs953218857 1189 dbSNP
rs1458875103 1190 dbSNP
rs1368347493 1194 dbSNP
rs989971810 1196 dbSNP
rs1020341333 1205 dbSNP
rs914461910 1209 dbSNP
rs758912156 1214 dbSNP
rs1376785880 1215 dbSNP
rs1000408062 1216 dbSNP
rs1346507424 1221 dbSNP
rs1482194201 1226 dbSNP
rs778196831 1229 dbSNP
rs1034522787 1230 dbSNP
rs1264756170 1231 dbSNP
rs746880443 1234 dbSNP
rs879113310 1236 dbSNP
rs752589762 1237 dbSNP
rs534557175 1239 dbSNP
rs1227479557 1242 dbSNP
rs917330048 1244 dbSNP
rs951520054 1246 dbSNP
rs1387663404 1248 dbSNP
rs1390422096 1253 dbSNP
rs554943019 1255 dbSNP
rs1221309333 1264 dbSNP
rs1263832217 1272 dbSNP
rs1278282891 1274 dbSNP
rs909836519 1277 dbSNP
rs1158433855 1282 dbSNP
rs574780642 1287 dbSNP
rs771069003 1302 dbSNP
rs1290982482 1320 dbSNP
rs1037575999 1323 dbSNP
rs1191792906 1324 dbSNP
rs921807529 1330 dbSNP
rs1055547851 1331 dbSNP
rs781105471 1332 dbSNP
rs537268814 1348 dbSNP
rs143704283 1351 dbSNP
rs1051978940 1356 dbSNP
rs1176765841 1357 dbSNP
rs1382112727 1358 dbSNP
rs1207492542 1359 dbSNP
rs550573959 1359 dbSNP
rs1326670867 1363 dbSNP
rs1163848638 1364 dbSNP
rs1347709584 1365 dbSNP
rs1276286834 1366 dbSNP
rs1233488651 1368 dbSNP
rs1459169712 1369 dbSNP
rs1330943533 1371 dbSNP
rs1299639732 1375 dbSNP
rs1437907337 1383 dbSNP
rs1325963060 1384 dbSNP
rs887316369 1389 dbSNP
rs1004474426 1400 dbSNP
rs1312021432 1415 dbSNP
rs1455674541 1415 dbSNP
rs1041727693 1420 dbSNP
rs1404407224 1436 dbSNP
rs1173428892 1447 dbSNP
rs1374693693 1447 dbSNP
rs1477816564 1448 dbSNP
rs1376928098 1452 dbSNP
rs901170316 1454 dbSNP
rs997276981 1455 dbSNP
rs1028395819 1462 dbSNP
rs904151326 1467 dbSNP
rs1323706701 1471 dbSNP
rs1463197366 1473 dbSNP
rs1280059394 1474 dbSNP
rs796739109 1491 dbSNP
rs1214593827 1502 dbSNP
rs1343847294 1505 dbSNP
rs1257493238 1507 dbSNP
rs1456457796 1508 dbSNP
rs958377089 1510 dbSNP
rs1231043228 1513 dbSNP
rs1254686964 1513 dbSNP
rs769862587 1526 dbSNP
rs913710997 1527 dbSNP
rs1011341351 1529 dbSNP
rs1021416942 1530 dbSNP
rs958882766 1534 dbSNP
rs576926089 1536 dbSNP
rs1342355417 1537 dbSNP
rs1334836162 1549 dbSNP
rs1014447125 1551 dbSNP
rs1400312466 1553 dbSNP
rs1171573121 1554 dbSNP
rs967236343 1556 dbSNP
rs1431435855 1563 dbSNP
rs1390508196 1564 dbSNP
rs1470487191 1575 dbSNP
rs1474348322 1577 dbSNP
rs1181051149 1584 dbSNP
rs545503904 1587 dbSNP
rs561615494 1596 dbSNP
rs1441537595 1607 dbSNP
rs959716492 1610 dbSNP
rs1399107629 1611 dbSNP
rs1206804660 1618 dbSNP
rs558743652 1625 dbSNP
rs1343343588 1628 dbSNP
rs1308135 1642 dbSNP
rs915638152 1649 dbSNP
rs973318066 1650 dbSNP
rs1284910915 1656 dbSNP
rs541026376 1662 dbSNP
rs1447353089 1666 dbSNP
rs181974949 1671 dbSNP
rs1310115975 1675 dbSNP
rs559497935 1685 dbSNP
rs1370947042 1700 dbSNP
rs1048557120 1702 dbSNP
rs931870948 1712 dbSNP
rs772145480 1713 dbSNP
rs1415847503 1724 dbSNP
rs776591168 1731 dbSNP
rs1381877965 1742 dbSNP
rs940210756 1743 dbSNP
rs945823033 1748 dbSNP
rs530314291 1751 dbSNP
rs115201833 1753 dbSNP
rs1251628703 1754 dbSNP
rs935632222 1755 dbSNP
rs1453881795 1756 dbSNP
rs1055441360 1757 dbSNP
rs1220494504 1758 dbSNP
rs1354353206 1761 dbSNP
rs1273869179 1782 dbSNP
rs1229315021 1792 dbSNP
rs1350089823 1792 dbSNP
rs879039141 1799 dbSNP
rs996830917 1803 dbSNP
rs1209419101 1804 dbSNP
rs1235512683 1808 dbSNP
rs1246403704 1808 dbSNP
rs1483419758 1809 dbSNP
rs1014882520 1810 dbSNP
rs1175081250 1810 dbSNP
rs1184353862 1810 dbSNP
rs1209414360 1810 dbSNP
rs1221484234 1810 dbSNP
rs1270159662 1810 dbSNP
rs1305171922 1810 dbSNP
rs1328797912 1810 dbSNP
rs1351363645 1810 dbSNP
rs1356671471 1810 dbSNP
rs1369480411 1810 dbSNP
rs1410736550 1810 dbSNP
rs1472745502 1810 dbSNP
rs1479223875 1810 dbSNP
rs894749899 1810 dbSNP
rs12723419 1811 dbSNP
rs1435752631 1815 dbSNP
rs1486495734 1820 dbSNP
rs1322024246 1821 dbSNP
rs1457278029 1824 dbSNP
rs1387219247 1831 dbSNP
rs1188393775 1833 dbSNP
rs1050210009 1834 dbSNP
rs1426400490 1834 dbSNP
rs887266820 1835 dbSNP
rs1189729409 1836 dbSNP
rs563930698 1836 dbSNP
rs960160892 1837 dbSNP
rs1472201667 1839 dbSNP
rs1419660203 1840 dbSNP
rs139567878 1841 dbSNP
rs1258978591 1845 dbSNP
rs147197182 1849 dbSNP
rs532923024 1853 dbSNP
rs1021032367 1859 dbSNP
rs561153868 1860 dbSNP
rs998671541 1864 dbSNP
rs4845486 1865 dbSNP
rs960246822 1869 dbSNP
rs1435656547 1879 dbSNP
rs1415740508 1880 dbSNP
rs962714314 1882 dbSNP
rs975397800 1891 dbSNP
rs991129777 1892 dbSNP
rs1175845917 1896 dbSNP
rs1402128984 1896 dbSNP
rs915568206 1902 dbSNP
rs1392360825 1912 dbSNP
rs1169797857 1924 dbSNP
rs952388186 1931 dbSNP
rs551438062 1932 dbSNP
rs1270844551 1937 dbSNP
rs1183655515 1938 dbSNP
rs1483727833 1940 dbSNP
rs1028256394 1942 dbSNP
rs1217557711 1946 dbSNP
rs759502690 1948 dbSNP
rs1276432082 1951 dbSNP
rs1229140681 1954 dbSNP
rs908315700 1956 dbSNP
rs1292886337 1963 dbSNP
rs565629202 1970 dbSNP
rs1349996532 1971 dbSNP
rs371186638 1977 dbSNP
rs987758944 1978 dbSNP
rs1379212032 1981 dbSNP
rs1211269087 1991 dbSNP
rs1308136 2005 dbSNP
rs945866490 2007 dbSNP
rs977219332 2007 dbSNP
rs548183465 2011 dbSNP
rs1487085986 2025 dbSNP
rs1167048023 2026 dbSNP
rs1424501782 2041 dbSNP
rs1413098411 2045 dbSNP
rs935715430 2054 dbSNP
rs138865577 2058 dbSNP
rs1253785998 2065 dbSNP
rs1205585261 2066 dbSNP
rs932899642 2069 dbSNP
rs1480292879 2074 dbSNP
rs537356788 2082 dbSNP
rs1249577993 2088 dbSNP
rs1246840175 2095 dbSNP
rs1049715730 2098 dbSNP
rs1292061387 2110 dbSNP
rs1231143736 2125 dbSNP
rs1242177468 2129 dbSNP
rs1289421829 2131 dbSNP
rs1234525552 2136 dbSNP
rs369837419 2137 dbSNP
rs950366205 2141 dbSNP
rs562154364 2166 dbSNP
rs1477371224 2173 dbSNP
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rs1458809470 2176 dbSNP
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rs1162866090 2183 dbSNP
rs1473725264 2197 dbSNP
rs1412935444 2199 dbSNP
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rs1042435900 2211 dbSNP
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rs1004777880 2272 dbSNP
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rs1207771813 2655 dbSNP
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rs60932961 2861 dbSNP
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rs1224272039 4513 dbSNP
rs1255719949 4513 dbSNP
rs1322640956 4514 dbSNP
rs145768222 4514 dbSNP
rs200263814 4515 dbSNP
rs1227096430 4516 dbSNP
rs926773421 4517 dbSNP
rs1023782815 4520 dbSNP
rs563950374 4523 dbSNP
rs1398412436 4527 dbSNP
rs530533192 4534 dbSNP
rs1037942648 4541 dbSNP
rs1164068534 4542 dbSNP
rs1421963767 4547 dbSNP
rs1381670429 4550 dbSNP
rs1438493584 4551 dbSNP
rs879018963 4568 dbSNP
rs532896597 4572 dbSNP
rs993487733 4575 dbSNP
rs982569593 4589 dbSNP
rs1308141 4610 dbSNP
rs1356426964 4617 dbSNP
rs115276638 4631 dbSNP
rs1239542866 4633 dbSNP
rs1048700 4638 dbSNP
rs972655667 4646 dbSNP
rs918518907 4673 dbSNP
rs1007591427 4674 dbSNP
rs529098365 4678 dbSNP
rs1017682410 4689 dbSNP
rs548742611 4690 dbSNP
rs1459901992 4694 dbSNP
rs1362403719 4700 dbSNP
rs1159121020 4707 dbSNP
rs1000683287 4709 dbSNP
rs568245994 4714 dbSNP
rs911013460 4733 dbSNP
rs1328030171 4735 dbSNP
rs530924708 4741 dbSNP
rs956855296 4744 dbSNP
rs1410918113 4747 dbSNP
rs1200619866 4770 dbSNP
rs78566300 4777 dbSNP
rs1041188129 4778 dbSNP
rs1489446614 4789 dbSNP
rs900859716 4791 dbSNP
rs1216438852 4792 dbSNP
rs183645509 4796 dbSNP
rs1025072202 4797 dbSNP
rs768259607 4798 dbSNP
rs1257812125 4805 dbSNP
rs1234293884 4806 dbSNP
rs1333709502 4816 dbSNP
rs1311862409 4821 dbSNP
rs1299407641 4829 dbSNP
rs1402889316 4830 dbSNP
rs1342075620 4833 dbSNP
rs1298810284 4856 dbSNP
rs970455927 4862 dbSNP
rs980496518 4863 dbSNP
rs1173786022 4874 dbSNP
rs934970817 4875 dbSNP
rs926387011 4886 dbSNP
rs942146229 4903 dbSNP
rs973584806 4913 dbSNP
rs1444116095 4914 dbSNP
rs762569160 4915 dbSNP
rs566617369 4930 dbSNP
rs1279731223 4932 dbSNP
rs1193638238 4938 dbSNP
rs539779231 4940 dbSNP
rs774706526 4942 dbSNP
rs762022342 4944 dbSNP
rs1052057024 4945 dbSNP
rs1230903622 4957 dbSNP
rs1220694485 4965 dbSNP
rs1319807678 4968 dbSNP
rs1278587958 4972 dbSNP
rs1217983003 4975 dbSNP
rs767908689 4976 dbSNP
rs1336041628 4979 dbSNP
rs1396123372 4983 dbSNP
rs1334363386 4992 dbSNP
rs1400791880 4992 dbSNP
rs1466852322 4998 dbSNP
rs1424836722 5000 dbSNP
rs905350384 5011 dbSNP
rs1474602574 5013 dbSNP
rs1274551585 5025 dbSNP
rs943397134 5035 dbSNP
rs1035503851 5036 dbSNP
rs1241339166 5041 dbSNP
rs1200806938 5044 dbSNP
rs770124402 5071 dbSNP
rs553750395 5074 dbSNP
rs768015801 5081 dbSNP
rs904630030 5092 dbSNP
rs1337142158 5093 dbSNP
rs1285889523 5102 dbSNP
rs1000632349 5109 dbSNP
rs1339426250 5134 dbSNP
rs1032594595 5141 dbSNP
rs138689616 5147 dbSNP
rs1027572940 5149 dbSNP
rs1308142 5151 dbSNP
rs1024932518 5153 dbSNP
rs970784844 5160 dbSNP
rs983995713 5163 dbSNP
rs911097994 5164 dbSNP
rs536090628 5166 dbSNP
rs189086624 5167 dbSNP
rs1167188770 5181 dbSNP
rs1394288445 5198 dbSNP
rs963124982 5202 dbSNP
rs922357269 5205 dbSNP
rs935044516 5206 dbSNP
rs1291745743 5207 dbSNP
rs973532700 5217 dbSNP
rs1052101119 5226 dbSNP
rs575769103 5239 dbSNP
rs1289442784 5240 dbSNP
rs1354399395 5244 dbSNP
rs893440511 5247 dbSNP
rs1376906900 5251 dbSNP
rs1308160342 5267 dbSNP
rs1439550591 5274 dbSNP
rs1333235892 5275 dbSNP
rs1294584509 5277 dbSNP
rs80094829 5279 dbSNP
rs1405102267 5281 dbSNP
rs1045720289 5283 dbSNP
rs529655994 5291 dbSNP
rs753918619 5299 dbSNP
rs1342111710 5303 dbSNP
rs557796615 5311 dbSNP
rs1336737142 5327 dbSNP
rs1196722700 5333 dbSNP
rs1157108384 5338 dbSNP
rs192656742 5339 dbSNP
rs1247468527 5345 dbSNP
rs1490108222 5351 dbSNP
rs1484810879 5352 dbSNP
rs1056614968 5364 dbSNP
rs1353866217 5365 dbSNP
rs897916931 5372 dbSNP
rs1039029427 5377 dbSNP
rs1221750075 5380 dbSNP
rs1258492863 5384 dbSNP
rs1275029243 5387 dbSNP
rs1427953433 5402 dbSNP
rs1436226861 5402 dbSNP
rs539837706 5408 dbSNP
rs141531672 5425 dbSNP
rs1401130317 5444 dbSNP
rs1371247109 5450 dbSNP
rs936097380 5453 dbSNP
rs182869159 5464 dbSNP
rs952045682 5465 dbSNP
rs373665472 5469 dbSNP
rs1168988957 5475 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions BCBL-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1015448. RNA binding protein: AGO2. Condition:BCBL-1 mRNA ...

- Haecker I; Gay LA; Yang Y; Hu J; Morse AM; et al., 2012, PLoS pathogens.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' cgAUUCUCCUGCCUCAGCCUc 3'
 		17 - 37
2 
miRNA  3' gguagaaggaaguCGGAg 5'
                       |||| 
Target 5' -------------GCCUc 3'
 		1 - 5
Article - Haecker I; Gay LA; Yang Y; Hu J; Morse AM; et al.
- PLoS pathogens, 2012
KSHV is the etiological agent of Kaposi's sarcoma (KS), primary effusion lymphoma (PEL), and a subset of multicentricCastleman's disease (MCD). The fact that KSHV-encoded miRNAs are readily detectable in all KSHV-associated tumors suggests a potential role in viral pathogenesis and tumorigenesis. MiRNA-mediated regulation of gene expression is a complex network with each miRNA having many potential targets, and to date only few KSHV miRNA targets have been experimentally determined. A detailed understanding of KSHV miRNA functions requires high-through putribonomics to globally analyze putative miRNA targets in a cell type-specific manner. We performed Ago HITS-CLIP to identify viral and cellular miRNAs and their cognate targets in two latently KSHV-infected PEL cell lines. Ago HITS-CLIP recovered 1170 and 950 cellular KSHV miRNA targets from BCBL-1 and BC-3, respectively. Importantly, enriched clusters contained KSHV miRNA seed matches in the 3'UTRs of numerous well characterized targets, among them THBS1, BACH1, and C/EBPbeta. KSHV miRNA targets were strongly enriched for genes involved in multiple pathways central for KSHV biology, such as apoptosis, cell cycle regulation, lymphocyte proliferation, and immune evasion, thus further supporting a role in KSHV pathogenesis and potentially tumorigenesis. A limited number of viral transcripts were also enriched by HITS-CLIP including vIL-6 expressed only in a subset of PEL cells during latency. Interestingly, Ago HITS-CLIP revealed extremely high levels of Ago-associated KSHV miRNAs especially in BC-3 cells where more than 70% of all miRNAs are of viral origin. This suggests that in addition to seed match-specific targeting of cellular genes, KSHV miRNAs may also function by hijacking RISCs, thereby contributing to a global de-repression of cellular gene expression due to the loss of regulation by human miRNAs. In summary, we provide an extensive list of cellular and viral miRNA targets representing an important resource to decipher KSHV miRNA function.
LinkOut: [PMID: 22927820]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_030918 | 3UTR | GUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_030918 | 3UTR | GUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_030918 | 3UTR | CACGAUCUCGGCUCACUGCACCCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCAUACACCACCACGCCCCACUAAUUUUUUGUAUUUUUGGUAGGGCGGGGUUUCACCAUGAUGGCCAGGUUGGUUUUGAACUCCUGACCUCAAGUAAUCUGCCCACCUCGGCCUCCCAAAGUGCUAGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_030918 | 3UTR | ACGAUCUCGGCUCACUGCACCCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCAUACACCACCACGCCCCACUAAUUUUUUGUAUUUUUGGUAGGGCGGGGUUUCACCAUGAUGGCCAGGUUGGUUUUGAACUCCUGACCUCAAGUAAUCUGCCCACCUCGGCCUCCCAAAGUGCUAGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_030918 | 3UTR | CGAUCUCGGCUCACUGCACCCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCAUACACCACCACGCCCCACUAAUUUUUUGUAUUUUUGGUAGGGCGGGGUUUCACCAUGAUGGCCAGGUUGGUUUUGAACUCCUGACCUCAAGUAAUCUGCCCACCUCGGCCUCCCAAAGUGCUAGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_030918 | 3UTR | CGAUCUCGGCUCACUGCACCCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCAUACACCACCACGCCCCACUAAUUUUUUGUAUUUUUGGUAGGGCGGGGUUUCACCAUGAUGGCCAGGUUGGUUUUGAACUCCUGACCUCAAGUAAUCUGCCCACCUCGGCCUCCCAAAGUGCUAGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_030918 | 3UTR | GGCUCACUGCACCCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCAUACACCACCACGCCCCACUAAUUUUUUGUAUUUUUGGUAGGGCGGGGUUUCACCAUGAUGGCCAGGUUGGUUUUGAACUCCUGACCUCAAGUAAUCUGCCCACCUCGGCCUCCCAAAGUGCUAGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_030918 | 3UTR | UCUCGGCUCACUGCACCCUCUGCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCAUACACCACCACGCCCCACUAAUUUUUUGUAUUUUUGGUAGGGCGGGGUUUCACCAUGAUGGCCAGGUUGGUUUUGAACUCCUGACCUCAAGUAAUCUGCCCACCUCGGCCUCCCAAAGUGCUAGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1015448
Method / RBP HITS-CLIP / AGO2
Cell line / Condition BCBL-1 / BCBL-1 mRNA
Location of target site ENST00000368843.3 | 3UTR | GCCUCUUGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22927820 / GSE41357
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000368843.3 | 3UTR | UUGGGUUCAAGCGAUUCUCCUGCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2