pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SMARCC1   
Synonyms BAF155, CRACC1, Rsc8, SRG3, SWI3
Description SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
Transcript NM_003074   
Expression
Putative miRNA Targets on SMARCC1
3'UTR of SMARCC1
(miRNA target sites are highlighted)
>SMARCC1|NM_003074|3'UTR
   1 CCTGGAAGATGCAGGGAACCTCCACGCCCACCACCATGAGCTGGAGTGGGGATGACAAGACTTGTGTTCCTCAACTTTCT
  81 TGGGTTTCTTTCAGGATTTTTCTTCTCACAGCTCCAAGCACGTGTCCCGTGCCTCCCCACTCCTCTTACCACCCCTCTCT
 161 CTGACACTTTTTGTGTTGGGTCCTCAGCCAACACTCAAGGGGAAACCTGTAGTGACAGTGTGCCCTGGTCATCCTTAAAA
 241 TAACCTGCATCTCCCCTGTCCTGGTGTGGGAGTAAGCTGACAGTTTCTCTGCAGGTCCTGTCAACTTTAGCATGCTATGT
 321 CTTTACCATTTTTGCTCTCTTGCAGTTTTTTGCTTTGTCTTATGCTTCTATGGATAATGCTATATAATCATTATCTTTTT
 401 ATCTTTCTGTTATTATTGTTTTAAAGGAGAGCATCCTAAGTTAATAGGAACCAAAAAATAATGATGGGCAGAAGGGGGGG
 481 AATAGCCACAGGGGACAAACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTTTCTGAGCTAAGAATGGTGCTGATGGT
 561 AAAGTTTGAGACTTTTGCCACACACAAATTTGTGAAAATTAAACGAGATGTGGAAGGAGAACCTCAGTGATTTTATTCCC
 641 TAGTGAGGCCTCTGAGGGCCTCCACACTGCCTGGCAGAACATACCACTGAACTAGTATGTGCTAGAGGAGGGCACAAACA
 721 TCCGCTCCTTCCCTAGGCCTGCTGGCTCTGGTTTTCTATGCAGATGATTCATTGGATTGGGGGTGAGTGTTTTGTTTTTC
 801 TGGGGGCAGTGTGAGCTTTGAGGGTTGGAATATTGGGAGGCATTCCTTAGTTTCCTCAACTAGCCTGGAAAGTTAGGAGT
 881 CTAGGGTAATTACCCCCAATGAGTCTAGCCTACTATTCACTGCTTTGTGTGCATTTTTTTCTCCCTCTTTAAAAAACCCT
 961 TTAAAAGAAAAAAAAAAGTAGATAGTGCTAAATATTTTAGCTCATGAAACTTGGTTAGGATGGCTGGGGGTACAAGTCCC
1041 CAAACTACCTCTTGTTACAGTAGCCAGGGAGTGGAATTTCGTCAACCGGTACTTTTAAGGTTAGGATGGGACGGGAAAAG
1121 TGAAGCAGGATATTAGCTCCTTATACCTTCTCCCTTCCATTTCTGAGATCTCACATTCCATCTATCACAGGGTTTTCAAA
1201 GAGATGCTGAGGGTAACAAGGAACTCACTTGGCAGTCAGAGCATCATGCTTTGAGGTTTGGGGTGCTCAGGCTGGGAGGG
1281 TAGAATGCCATTCCAGAGGACAAGCCACAAAAATGCCTTAATTTGAGCTCGTATTTACCCCTGCTGATAAGTGACTTGAG
1361 AGTTCCCGGTTTTTTCCTCTTGTCCTTCCCTCCCTTCTGTCCTTCCATGTGTGGGGAAAGGGTGTTTTTGGTAGAGCTTG
1441 GTTTCCAAAGCGCCTGGCTTTCTCACTTCACATTCTCAAGTGGCAGTTTCATTATTTAGAATGCAAGGTGGACATCTTTT
1521 GGATATCTTTTTCTATATATTTTCTAAAGCTTTACATATGAGAGGGTATAGGGAGGTGTTTATAAAACACTTGAGAACTT
1601 TTTTCCTTAATATCAGAAAGCAAAAAAATAAAACCACAATTGAGATTTGCCTTTCAAACCCTCAGGTTTGCCTCTAACCA
1681 GGTGTCCCTGGTCACCATCAGAGTACTGGAATACGGGAACCGAGGAGACCTTGGTCCTTTTGTTTTTGTTCTGGACTCTT
1761 GGGAGTGGAAATGAGAATGAGTTTATTCCTACTGGAGCTTAGTTCCAATGCATTTGGCTCCAGAAAGACCCCAGTGCCTT
1841 TTGACAATGGCCAGGGTTTTACCTACTTCCTGCCAGTCTTTCCCAAAGGAAACTCATTCCAAATACTTCTTTTTTCCCCT
1921 GGAGTCCGAGAAGGAAAATGGAATTCTGGTTCATACTGTGGTCCCTTGTAACCTCAGGTCTTTAATGTGATCACTTTCAA
2001 ATTTAAAAGATCCAGGTGGAAATATTTTTACTATAGTAATAATTCTACAAAATACCTGAATTCTTAACACTGTTATATTT
2081 CAGTATAAGTGGTGGCTTTTTCTTTTCATGTCTTTGATCTGGTTTTATTCCTGTAATTCAGCCACCTGATTTTGTGAGGG
2161 GGGGGAATAATATGTGGTTTTTGTACAAACATGTTTCTCAGTGTGTTGTTATTTTGGAAAAAATGAGGGGAGGGAGTTTG
2241 GCAAGAATGGAGAAAATGAATGAAGAAGGCCTAATCTCTCTCTTTTTCAGTGAATAAATGGAACACCATTTCTGGATTCT
2321 AAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGU--UGAGU------------GUCAC-GUCu 5'
            :||||||  |||||            :|||| ||| 
Target 5' ccTCAGCCAACACTCAAGGGGAAACCTGTAGTGACAGt 3'
182 - 219 125.00 -23.60
2
miRNA  3' ucGGUCGGUUGAGUGUCACGucu 5'
            ||||  |:  | ||||||   
Target 5' ctCCAGAAAGACCCCAGTGCctt 3'
1818 - 1840 121.00 -16.02
3
miRNA  3' ucggucGGU-UGAGUG-UCA-CGUCu 5'
                :|| |:|| | ||| |||| 
Target 5' ctcactTCACATTCTCAAGTGGCAGt 3'
1462 - 1487 121.00 -12.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN6769182 2 COSMIC
COSN26995719 11 COSMIC
COSN30179419 22 COSMIC
COSN30143181 26 COSMIC
COSN2529084 34 COSMIC
COSN30449952 43 COSMIC
COSN30480398 48 COSMIC
COSN30480370 49 COSMIC
COSN30117417 60 COSMIC
COSN23016338 79 COSMIC
COSN31576666 99 COSMIC
COSN16131320 102 COSMIC
COSN16129339 115 COSMIC
COSN30120028 129 COSMIC
COSN31484734 279 COSMIC
COSN31609440 403 COSMIC
COSN28811353 429 COSMIC
COSN30161878 454 COSMIC
COSN30175288 473 COSMIC
COSN17078482 494 COSMIC
COSN7699495 587 COSMIC
COSN31536216 686 COSMIC
COSN29838719 758 COSMIC
COSN1277766 773 COSMIC
COSN30161039 857 COSMIC
COSN20098445 892 COSMIC
COSN22154655 909 COSMIC
COSN27376547 967 COSMIC
COSN30161156 1003 COSMIC
COSN31522575 1018 COSMIC
COSN31571092 1080 COSMIC
COSN31487976 1296 COSMIC
COSN189383 1301 COSMIC
COSN31611150 1333 COSMIC
COSN9003652 1365 COSMIC
COSN31522122 1516 COSMIC
COSN25628193 1599 COSMIC
COSN31593532 1714 COSMIC
COSN31585621 2063 COSMIC
COSN31522245 2157 COSMIC
COSN31481372 2165 COSMIC
COSN31488845 2199 COSMIC
COSN32102372 2587 COSMIC
COSN30241067 2749 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs763906752 14 dbSNP
rs1159972732 15 dbSNP
rs1402518906 18 dbSNP
rs761106906 19 dbSNP
rs1266876462 21 dbSNP
rs1270930210 23 dbSNP
rs1307042982 24 dbSNP
rs189496850 25 dbSNP
rs767843750 26 dbSNP
rs1269369476 29 dbSNP
rs760118623 31 dbSNP
rs774242886 35 dbSNP
rs1241155377 36 dbSNP
rs374076665 37 dbSNP
rs1318216159 39 dbSNP
rs1275813937 44 dbSNP
rs989408038 46 dbSNP
rs1003983586 47 dbSNP
rs1481232976 49 dbSNP
rs955804246 50 dbSNP
rs1035475486 56 dbSNP
rs1408349641 61 dbSNP
rs879076414 64 dbSNP
rs780767147 65 dbSNP
rs1002539959 74 dbSNP
rs1363648958 97 dbSNP
rs905489945 108 dbSNP
rs1026398477 118 dbSNP
rs1347203916 120 dbSNP
rs994840962 121 dbSNP
rs898340636 122 dbSNP
rs1361356598 124 dbSNP
rs186285791 127 dbSNP
rs570810944 128 dbSNP
rs1038137577 129 dbSNP
rs765233508 129 dbSNP
rs1222165628 133 dbSNP
rs754632085 138 dbSNP
rs1280102109 140 dbSNP
rs1490958722 148 dbSNP
rs1200596087 150 dbSNP
rs1047541158 153 dbSNP
rs1338341288 159 dbSNP
rs1249193954 161 dbSNP
rs889724483 164 dbSNP
rs772232713 165 dbSNP
rs1383259367 166 dbSNP
rs933684446 168 dbSNP
rs552761197 171 dbSNP
rs1164184637 173 dbSNP
rs977845698 175 dbSNP
rs946421820 188 dbSNP
rs1041069044 191 dbSNP
rs915431233 198 dbSNP
rs911191712 204 dbSNP
rs1384976939 212 dbSNP
rs530979873 215 dbSNP
rs1299961613 230 dbSNP
rs1380731005 230 dbSNP
rs746506814 244 dbSNP
rs1245859260 250 dbSNP
rs1316431855 253 dbSNP
rs1358826495 256 dbSNP
rs985883644 263 dbSNP
rs142475256 264 dbSNP
rs1409380799 268 dbSNP
rs773449277 271 dbSNP
rs369081989 273 dbSNP
rs959556286 274 dbSNP
rs1217549872 275 dbSNP
rs548929477 279 dbSNP
rs779660043 286 dbSNP
rs1184125414 287 dbSNP
rs982385531 289 dbSNP
rs1169818848 290 dbSNP
rs148711246 291 dbSNP
rs1026237090 300 dbSNP
rs994893319 302 dbSNP
rs559434175 317 dbSNP
rs1017668057 322 dbSNP
rs1446963109 331 dbSNP
rs1322867112 334 dbSNP
rs1064450 342 dbSNP
rs1238627135 347 dbSNP
rs540977704 359 dbSNP
rs1403990731 361 dbSNP
rs532264582 363 dbSNP
rs1007164908 365 dbSNP
rs889618763 368 dbSNP
rs1051491483 370 dbSNP
rs1436667181 371 dbSNP
rs981156132 375 dbSNP
rs181908070 376 dbSNP
rs765109375 382 dbSNP
rs1279304126 387 dbSNP
rs1022618073 390 dbSNP
rs1006328016 407 dbSNP
rs951986489 409 dbSNP
rs9835477 412 dbSNP
rs1206805919 413 dbSNP
rs1042052996 416 dbSNP
rs1342494482 418 dbSNP
rs532190619 418 dbSNP
rs1290740960 430 dbSNP
rs188429127 436 dbSNP
rs1181050809 444 dbSNP
rs748295545 451 dbSNP
rs554744793 452 dbSNP
rs915024966 458 dbSNP
rs1243583034 461 dbSNP
rs993431400 468 dbSNP
rs542553154 475 dbSNP
rs1469309579 476 dbSNP
rs1284648365 478 dbSNP
rs938219454 479 dbSNP
rs1404491078 480 dbSNP
rs1390143834 481 dbSNP
rs1328848134 483 dbSNP
rs767648085 483 dbSNP
rs1412071409 484 dbSNP
rs928116073 494 dbSNP
rs1322429798 501 dbSNP
rs1223552678 512 dbSNP
rs1257215849 519 dbSNP
rs1334011923 525 dbSNP
rs1336941346 528 dbSNP
rs1331026460 529 dbSNP
rs1195146322 556 dbSNP
rs73083103 562 dbSNP
rs1483878626 564 dbSNP
rs950937866 564 dbSNP
rs1365253390 568 dbSNP
rs1162056013 573 dbSNP
rs1379431707 577 dbSNP
rs1426874957 584 dbSNP
rs919275138 587 dbSNP
rs1397853186 601 dbSNP
rs149586534 605 dbSNP
rs1301716134 608 dbSNP
rs1345322913 610 dbSNP
rs914828494 617 dbSNP
rs534671952 621 dbSNP
rs57845792 627 dbSNP
rs1158448437 628 dbSNP
rs61573869 629 dbSNP
rs1324171802 640 dbSNP
rs749100442 643 dbSNP
rs963335216 645 dbSNP
rs1251765185 646 dbSNP
rs1053743174 652 dbSNP
rs934909765 659 dbSNP
rs1019070889 667 dbSNP
rs928761031 668 dbSNP
rs753189811 670 dbSNP
rs759896592 671 dbSNP
rs139935326 674 dbSNP
rs1183786387 677 dbSNP
rs1192590680 682 dbSNP
rs954015065 691 dbSNP
rs1029470117 711 dbSNP
rs1267649300 713 dbSNP
rs1162280339 716 dbSNP
rs1365328740 721 dbSNP
rs1425768079 722 dbSNP
rs984469410 723 dbSNP
rs1219811302 724 dbSNP
rs1453064234 733 dbSNP
rs1243662536 738 dbSNP
rs951761905 742 dbSNP
rs1290363136 747 dbSNP
rs998122028 753 dbSNP
rs558821165 758 dbSNP
rs1267405278 781 dbSNP
rs1348520961 783 dbSNP
rs965952195 788 dbSNP
rs1018716388 800 dbSNP
rs902455269 802 dbSNP
rs1248701538 807 dbSNP
rs527825105 809 dbSNP
rs1229165596 817 dbSNP
rs1385169064 825 dbSNP
rs1010613179 835 dbSNP
rs1301464516 840 dbSNP
rs889861159 842 dbSNP
rs184244711 847 dbSNP
rs1320879735 853 dbSNP
rs1011665783 857 dbSNP
rs756111430 861 dbSNP
rs745871221 869 dbSNP
rs1335936942 876 dbSNP
rs1383467051 878 dbSNP
rs762979118 884 dbSNP
rs893094690 890 dbSNP
rs77978730 892 dbSNP
rs869126665 897 dbSNP
rs11375183 898 dbSNP
rs201321637 898 dbSNP
rs397813959 898 dbSNP
rs201657094 900 dbSNP
rs1410888985 909 dbSNP
rs533073510 914 dbSNP
rs1472598444 915 dbSNP
rs773723916 927 dbSNP
rs1045923423 929 dbSNP
rs948902626 941 dbSNP
rs1413730925 943 dbSNP
rs1467731172 949 dbSNP
rs780539301 957 dbSNP
rs929455436 961 dbSNP
rs1247048595 962 dbSNP
rs1214885096 963 dbSNP
rs143364938 963 dbSNP
rs1445207584 966 dbSNP
rs1269873185 967 dbSNP
rs1296442892 967 dbSNP
rs1209293761 977 dbSNP
rs368515459 978 dbSNP
rs538915768 978 dbSNP
rs918892732 978 dbSNP
rs930423125 978 dbSNP
rs1312905385 987 dbSNP
rs1212852828 990 dbSNP
rs919536691 995 dbSNP
rs965922574 1000 dbSNP
rs570203825 1003 dbSNP
rs1183381146 1024 dbSNP
rs973617863 1030 dbSNP
rs548794824 1032 dbSNP
rs868777116 1038 dbSNP
rs1368644749 1053 dbSNP
rs963386703 1057 dbSNP
rs1198301227 1060 dbSNP
rs910514097 1067 dbSNP
rs985924119 1069 dbSNP
rs986634018 1073 dbSNP
rs954795624 1078 dbSNP
rs536946389 1081 dbSNP
rs79407806 1085 dbSNP
rs192959773 1087 dbSNP
rs976610755 1088 dbSNP
rs1403318174 1089 dbSNP
rs1469765547 1095 dbSNP
rs966528723 1096 dbSNP
rs1274551011 1100 dbSNP
rs1368308765 1104 dbSNP
rs1221028197 1105 dbSNP
rs1031662767 1106 dbSNP
rs115392384 1112 dbSNP
rs1206553905 1113 dbSNP
rs748448282 1115 dbSNP
rs1434534133 1125 dbSNP
rs1489979176 1135 dbSNP
rs867751167 1140 dbSNP
rs1045974080 1143 dbSNP
rs1010790149 1144 dbSNP
rs1246933103 1147 dbSNP
rs948957599 1152 dbSNP
rs894607213 1153 dbSNP
rs1185580143 1154 dbSNP
rs1418211180 1163 dbSNP
rs1449976828 1165 dbSNP
rs1049246881 1177 dbSNP
rs893472533 1184 dbSNP
rs1323074675 1190 dbSNP
rs1350709514 1194 dbSNP
rs930370202 1198 dbSNP
rs1249687717 1200 dbSNP
rs1364612640 1201 dbSNP
rs1189092248 1203 dbSNP
rs1229773652 1208 dbSNP
rs1033320504 1209 dbSNP
rs1460846100 1215 dbSNP
rs114328668 1219 dbSNP
rs34554174 1222 dbSNP
rs1326699774 1224 dbSNP
rs1429029804 1242 dbSNP
rs1212415395 1245 dbSNP
rs1290091073 1248 dbSNP
rs1453008645 1250 dbSNP
rs1213268249 1255 dbSNP
rs971697880 1269 dbSNP
rs151292604 1271 dbSNP
rs1272486330 1278 dbSNP
rs911561989 1281 dbSNP
rs985979838 1286 dbSNP
rs1163655947 1293 dbSNP
rs953576728 1299 dbSNP
rs78615793 1301 dbSNP
rs1046115895 1305 dbSNP
rs1022526279 1306 dbSNP
rs989354980 1310 dbSNP
rs1435915003 1311 dbSNP
rs34505792 1314 dbSNP
rs1452517063 1317 dbSNP
rs1323074417 1330 dbSNP
rs1381258258 1331 dbSNP
rs1447714828 1332 dbSNP
rs549655745 1341 dbSNP
rs1804698 1343 dbSNP
rs1381301570 1355 dbSNP
rs1358970047 1362 dbSNP
rs957676053 1367 dbSNP
rs531425651 1368 dbSNP
rs1467073587 1376 dbSNP
rs1031797086 1377 dbSNP
rs929509525 1383 dbSNP
rs777035459 1384 dbSNP
rs1241164453 1394 dbSNP
rs1037919007 1396 dbSNP
rs942261387 1399 dbSNP
rs1169252620 1404 dbSNP
rs910562134 1408 dbSNP
rs986173565 1424 dbSNP
rs1157039386 1448 dbSNP
rs1411576367 1451 dbSNP
rs933303849 1452 dbSNP
rs560935690 1453 dbSNP
rs894750824 1454 dbSNP
rs374090006 1466 dbSNP
rs1414346512 1475 dbSNP
rs1335460306 1477 dbSNP
rs1342635863 1479 dbSNP
rs1440540832 1492 dbSNP
rs1287300373 1494 dbSNP
rs1350771912 1499 dbSNP
rs189442492 1504 dbSNP
rs1183538317 1507 dbSNP
rs1260650722 1522 dbSNP
rs1343691506 1527 dbSNP
rs1200896831 1528 dbSNP
rs1483590221 1535 dbSNP
rs977502773 1543 dbSNP
rs1280731951 1559 dbSNP
rs966538772 1566 dbSNP
rs1181243800 1567 dbSNP
rs1202655013 1575 dbSNP
rs1020767877 1576 dbSNP
rs759147754 1577 dbSNP
rs1344637322 1578 dbSNP
rs897568571 1593 dbSNP
rs1245791147 1595 dbSNP
rs1036031961 1613 dbSNP
rs1427213283 1616 dbSNP
rs944469503 1627 dbSNP
rs1357751500 1629 dbSNP
rs989411660 1635 dbSNP
rs185324705 1636 dbSNP
rs559981945 1637 dbSNP
rs1408543171 1639 dbSNP
rs1307766189 1644 dbSNP
rs1033994988 1657 dbSNP
rs1371582329 1663 dbSNP
rs1411213370 1665 dbSNP
rs544888184 1681 dbSNP
rs1280978147 1689 dbSNP
rs147484358 1703 dbSNP
rs906180993 1709 dbSNP
rs1276518765 1711 dbSNP
rs562625708 1714 dbSNP
rs537192612 1715 dbSNP
rs989714812 1717 dbSNP
rs576444336 1722 dbSNP
rs923775646 1742 dbSNP
rs1265608025 1751 dbSNP
rs1432650322 1758 dbSNP
rs977474702 1765 dbSNP
rs1366519365 1791 dbSNP
rs971488095 1792 dbSNP
rs1474685304 1803 dbSNP
rs1064452 1804 dbSNP
rs1024294147 1807 dbSNP
rs1168522755 1807 dbSNP
rs898005339 1808 dbSNP
rs1166780716 1813 dbSNP
rs1300887119 1820 dbSNP
rs547572075 1831 dbSNP
rs1389624423 1842 dbSNP
rs1365555346 1843 dbSNP
rs1012948547 1845 dbSNP
rs1324903220 1847 dbSNP
rs1324189489 1851 dbSNP
rs555220452 1853 dbSNP
rs942176070 1859 dbSNP
rs536805151 1860 dbSNP
rs191899332 1865 dbSNP
rs1488256820 1867 dbSNP
rs889404435 1869 dbSNP
rs1484158639 1874 dbSNP
rs1252732749 1882 dbSNP
rs995501176 1882 dbSNP
rs1051109656 1884 dbSNP
rs897964611 1891 dbSNP
rs933377806 1896 dbSNP
rs1036503742 1903 dbSNP
rs923230856 1906 dbSNP
rs977512153 1909 dbSNP
rs946086978 1912 dbSNP
rs1382139191 1920 dbSNP
rs913753755 1927 dbSNP
rs187357128 1928 dbSNP
rs914890706 1929 dbSNP
rs1450399912 1934 dbSNP
rs958094894 1955 dbSNP
rs1311685914 1971 dbSNP
rs539314566 1978 dbSNP
rs1245710556 1980 dbSNP
rs1267525389 1981 dbSNP
rs1327146666 1987 dbSNP
rs926592490 1997 dbSNP
rs562198396 2005 dbSNP
rs1249152856 2045 dbSNP
rs935256658 2056 dbSNP
rs571194731 2063 dbSNP
rs1255834271 2070 dbSNP
rs1225968965 2071 dbSNP
rs1189178329 2074 dbSNP
rs1351813396 2075 dbSNP
rs970421769 2085 dbSNP
rs1456222847 2088 dbSNP
rs1159210110 2091 dbSNP
rs1403985020 2091 dbSNP
rs1464431580 2094 dbSNP
rs1024562055 2097 dbSNP
rs1379616644 2099 dbSNP
rs993220121 2102 dbSNP
rs1295117098 2118 dbSNP
rs1228045646 2131 dbSNP
rs1458331712 2131 dbSNP
rs961793914 2132 dbSNP
rs1344601478 2133 dbSNP
rs923744737 2135 dbSNP
rs1015954818 2143 dbSNP
rs1483772764 2150 dbSNP
rs533642973 2158 dbSNP
rs757328664 2159 dbSNP
rs183427616 2160 dbSNP
rs998144667 2163 dbSNP
rs560622114 2165 dbSNP
rs200719659 2166 dbSNP
rs901859989 2166 dbSNP
rs917372323 2166 dbSNP
rs1198923864 2171 dbSNP
rs1305907315 2173 dbSNP
rs768963988 2173 dbSNP
rs201210687 2176 dbSNP
rs1289220119 2179 dbSNP
rs1352401018 2185 dbSNP
rs1217597887 2186 dbSNP
rs1479602508 2190 dbSNP
rs1041718828 2191 dbSNP
rs958695519 2201 dbSNP
rs753674894 2211 dbSNP
rs1313261057 2217 dbSNP
rs1028078732 2224 dbSNP
rs1272861252 2224 dbSNP
rs995073235 2235 dbSNP
rs962289931 2236 dbSNP
rs1253600390 2259 dbSNP
rs114040512 2261 dbSNP
rs1190166361 2265 dbSNP
rs192429520 2268 dbSNP
rs1434784150 2269 dbSNP
rs1166653244 2274 dbSNP
rs1389243941 2276 dbSNP
rs1009050684 2282 dbSNP
rs1054937564 2283 dbSNP
rs1257169839 2284 dbSNP
rs1356541150 2288 dbSNP
rs187978167 2291 dbSNP
rs926409327 2308 dbSNP
rs1368414956 2316 dbSNP
rs1237061261 2329 dbSNP
rs1296132653 2330 dbSNP
rs1341879899 2331 dbSNP
rs1229669712 2344 dbSNP
rs543828668 2345 dbSNP
rs1259426631 2365 dbSNP
rs777761787 2374 dbSNP
rs1220398294 2386 dbSNP
rs1050141032 2390 dbSNP
rs752081030 2391 dbSNP
rs182450959 2395 dbSNP
rs1330556234 2397 dbSNP
rs1288472150 2419 dbSNP
rs1222495285 2422 dbSNP
rs1329051063 2423 dbSNP
rs1186586526 2430 dbSNP
rs78343683 2431 dbSNP
rs1449816709 2433 dbSNP
rs996334413 2434 dbSNP
rs755220812 2440 dbSNP
rs971733840 2441 dbSNP
rs961680586 2443 dbSNP
rs751765053 2444 dbSNP
rs565147651 2445 dbSNP
rs1164353295 2464 dbSNP
rs755273039 2474 dbSNP
rs766536309 2478 dbSNP
rs1443273495 2493 dbSNP
rs1383992206 2504 dbSNP
rs1365154846 2511 dbSNP
rs1006346290 2513 dbSNP
rs763035376 2526 dbSNP
rs1029549287 2532 dbSNP
rs750477415 2536 dbSNP
rs935215533 2541 dbSNP
rs1336280613 2542 dbSNP
rs1206329895 2544 dbSNP
rs1266979747 2550 dbSNP
rs1389432332 2553 dbSNP
rs1190452820 2558 dbSNP
rs1175856616 2568 dbSNP
rs902460160 2579 dbSNP
rs1181484644 2581 dbSNP
rs1414861265 2584 dbSNP
rs1046255430 2591 dbSNP
rs1156980645 2605 dbSNP
rs1379657689 2610 dbSNP
rs1458172459 2611 dbSNP
rs997798575 2615 dbSNP
rs1320852563 2618 dbSNP
rs79394230 2626 dbSNP
rs1447830417 2629 dbSNP
rs576472514 2637 dbSNP
rs1010274330 2645 dbSNP
rs1220408877 2646 dbSNP
rs1246606765 2650 dbSNP
rs1287101300 2657 dbSNP
rs776947190 2663 dbSNP
rs1329242200 2665 dbSNP
rs1465782035 2676 dbSNP
rs1268188970 2677 dbSNP
rs893137526 2682 dbSNP
rs1441610130 2686 dbSNP
rs920585648 2689 dbSNP
rs768965026 2690 dbSNP
rs1054548271 2695 dbSNP
rs973837001 2698 dbSNP
rs760969066 2699 dbSNP
rs1180306507 2703 dbSNP
rs1411244218 2704 dbSNP
rs191478065 2712 dbSNP
rs1160782823 2718 dbSNP
rs543120733 2720 dbSNP
rs1295183517 2722 dbSNP
rs1400750673 2725 dbSNP
rs1015166319 2728 dbSNP
rs1437162968 2733 dbSNP
rs572723936 2734 dbSNP
rs1377670162 2748 dbSNP
rs1407546478 2749 dbSNP
rs1336160177 2751 dbSNP
rs1350553149 2757 dbSNP
rs143599701 2763 dbSNP
rs949209683 2764 dbSNP
rs954840005 2768 dbSNP
rs1282123558 2770 dbSNP
rs1481951292 2774 dbSNP
rs1404468342 2777 dbSNP
rs1203274067 2781 dbSNP
rs1173333732 2782 dbSNP
rs1438441381 2798 dbSNP
rs1184035897 2805 dbSNP
rs538971840 2808 dbSNP
rs1029586885 2809 dbSNP
rs995914326 2815 dbSNP
rs1173681174 2820 dbSNP
rs893569087 2822 dbSNP
rs766795447 2823 dbSNP
rs1450628657 2831 dbSNP
rs971953164 2849 dbSNP
rs1242997635 2861 dbSNP
rs940364359 2878 dbSNP
rs1330015969 2880 dbSNP
rs902428936 2895 dbSNP
rs186181443 2910 dbSNP
rs2293226 2917 dbSNP
rs111750473 2918 dbSNP
rs1197792079 2922 dbSNP
rs745376577 2922 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000254480.5 | 3UTR | AAAAAAAGAAGUGAUUGUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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