pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol GABRA1   
Synonyms ECA4, EIEE19, EJM, EJM5
Description gamma-aminobutyric acid type A receptor alpha1 subunit
Transcript NM_000806   
Other Transcripts NM_001127643 , NM_001127644 , NM_001127645 , NM_001127648   
Expression
Putative miRNA Targets on GABRA1
3'UTR of GABRA1
(miRNA target sites are highlighted)
>GABRA1|NM_000806|3'UTR
   1 ATCTTTTACTCACATTCTGTTGTTCAGTCCTCTGCACTGGGAATTTATTTATGTTCTCAACGCAGTAATTCCCATCTGCT
  81 TTATTGCCTCTGTCTTAAAGAATTTGAAAGTTTCCTTATTTTCATAATTCATTTAAGAACAAGAGACCCCTGTCTGGCAG
 161 TCTGGAGCAAAGCAGACTATGCAGCTTGGAGACAGGATTCTGACAGAGCAAGCGAAAGAGCAAAGTCATGTCAGAAGGAG
 241 ACAGAATGAGAGAGAAAAGAGGGGGAAGATGGTTCAAAGATACAAGAAAAAGTAGAAAAAAAAATAACACTTAACTAAAA
 321 CCCCTAGGTCATTTGTAGATATATATTTCCAAATATTCTAAAAAAGATACTGTATATGTCAAAAATATTTTTATGTGAAG
 401 GTGTTTCAAAGGGTAAATTATAAATGTTTCATGAAGAAAAAATTTTAAAAATCTACGTCTTTATTACACAAACTATGGTG
 481 TGCTTATGTTTTTGTTTTGCTTTTTAAACTGATGTATAGCTTTAACATTTTGTTTCCAAAGCTGAAGATCCCCATTCTTT
 561 CTCTTTGAAAAAAAAAAAGGCCTAATGCATTATTTTGTCATAAAATGCTATTTTAAAATTCATGGAACTTTCATACGTAA
 641 AGGTGCAGTTGCTCATTGTAGAGCACATTTAGTCCAATGAAGATAAATGCTTTAAATAGTTTACTTCACTTTCATCTGAG
 721 CTTTTACCACTAGACTCAAGGAAGAATAATTTTAACAGACATGTATACTCCATAGAAACTAAACTAAAATAGTTTAAAAA
 801 TATTCCCTTTTTCACCCTATTTTCAGATAGCACATGAGCCCAACACTCACTTAATTCTCATTATGAAGATGTTTTTAGAG
 881 GGGCAAAAATATTTTGCAAGCTCTGGAATTGTTGAATGTATTCTTTTATATAACTACATTAAAAGCTTTAGATTGAAATT
 961 TATGACTAGCAAACAAAAATAGAATATATAAACGATATATGTAAATATACAGCATGAGATTGTACATTTTTTACTTTTTT
1041 AAAATTGTGTTCTTAAAATATTGTGTAAGAATCACTGCACTTAGCTGTTGGAATGTTGTTAAATGCTATGGAAATACATT
1121 TAGAACCTGCATTTAAGAACAGAACAGCAAGTATGAACCACATGGAACTTAAAACATATGGGTGTGAAGTCCACTTATGT
1201 AGACAAAACTTATAATTTCCAAACTGTTGTCTAGTATACAGTGATCAGTTGCTCTCTGTTCAAGTCATTCCACACATTTC
1281 CCTATTTTAGGCTATTATAATATAGAAAGAAAATGGGAAGCATTAGTTGGAGCTAGAAAATGAACTGTATATTATTGCTA
1361 TATTTGCTAATACCAACTATTTCAATAAGTGTTGTACCATATGTAGCATTAAATATAAAATACATAAAAGAATGTACAGA
1441 AAATAGCTTTTATTGAGTAATATTACATTTCATTTATACTGTAGCAATATATTTGTAGGTATACTATGTAAGGGCTTTAA
1521 ATAAAAGAGGTCCATTAATACTTCCTTATAAAAATTCTAGTCTGTTTCATTACTGCCCAGATGTTTTAGAGATAAATATT
1601 TATGCAGAAGGTATTTTTGAAGTCTCCTTTTGTCTGATAGAGTTTAACAGATATTTAAATTTAGTGCTCAGAATCCACAA
1681 GTCACGGTCTAAACACACTTAGAATACTACAGCATAAATCTGTTAGCATTATTGCCAAATAAGACAGTTGGGATCCAAAC
1761 CCAAGTCTTGAGCAATGTTTTTCTCAAAAAGCTGCTATCCAATGATATAGGAAAATACATTGTGTTTTCCTAAACACACT
1841 TTTCTTTTTAAATGTGCTTCATTGTTTGATTTGGTCCTGCCTAAATTTCACAAGCTAGGCCAATGAAGGCTGAATCAAAG
1921 ACATTTCATCCACCAATATCATGTGTAGATATTATGTATAGAAAATAAAATAAATTATGGCTCTAACTTCTGTGTTGCTG
2001 TTTATCTTGTTATTTTTCGGCGTTATACTAATGTGTTTATTGAGAGCATTTTACCTTCCAGACTTCTCATGGCTAACTTT
2081 TGGTCTGTATTTTGCTCCTTAGATGTGAATATTTCTTATTAGTCTGCTTCCTGCTACGCAATGACTGCATTTCTATCATT
2161 TCTCAGTTTGTTAGTATATGTGGATAGTATTCTACTGTATAAATGATTGCAAAGTTTATCAAAAACAAATTATTATATGT
2241 AGCTTTTCTACAGTGCTTTGCTAAACCATGTAGTACTAGTTAAGTCTTCCTTGAAAATAAAGATACACTCTTATAGGGGA
2321 CAGTTCCTGTTCACTCCCAGGAAACTTTTTTAAAAGATGACACTGAATGTTTATTGCACTTTAGTGCAGTGAAGTGGCAA
2401 TAAAACCTAACATGAATCAAGGTTGTTTATGGCAGATGCATGTGTTGCTTTACAGAGTTTAGCAAAAGCTCTTAATTTTA
2481 TGTCATACTGTATTCTACTGAATAATAAAGCTAACATTATTCAATAATAAAATGGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acauGUCGUCCGUGUCUGUCc 5'
              ||| |||   |||||| 
Target 5' atgtCAGAAGG---AGACAGa 3'
228 - 245 129.00 -14.10
2
miRNA  3' acAUGUCG-UCCGUGUCUGUCc 5'
            |:||||  ||   |||||| 
Target 5' taTGCAGCTTGG---AGACAGg 3'
178 - 196 127.00 -18.90
3
miRNA  3' acaUGUCGUCCGUGUCUGUCc 5'
             ||  :|  : ||||:|| 
Target 5' ttcACCCTATTTTCAGATAGc 3'
811 - 831 126.00 -7.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
381966 3 ClinVar
352602 214 ClinVar
904231 243 ClinVar
352603 296 ClinVar
352604 303 ClinVar
905021 326 ClinVar
352605 399 ClinVar
352606 402 ClinVar
352607 414 ClinVar
905022 434 ClinVar
905023 439 ClinVar
905024 457 ClinVar
352608 471 ClinVar
906603 581 ClinVar
906604 581 ClinVar
906605 631 ClinVar
352609 772 ClinVar
906606 827 ClinVar
906607 839 ClinVar
907624 938 ClinVar
907625 989 ClinVar
907626 994 ClinVar
352610 1062 ClinVar
352611 1320 ClinVar
907627 1325 ClinVar
907628 1360 ClinVar
352612 1382 ClinVar
904289 1426 ClinVar
904290 1427 ClinVar
352613 1444 ClinVar
352614 1507 ClinVar
352615 1513 ClinVar
352616 1527 ClinVar
352617 1602 ClinVar
905089 1610 ClinVar
905090 1612 ClinVar
352618 1660 ClinVar
905091 1686 ClinVar
905092 1687 ClinVar
905093 1698 ClinVar
905094 1750 ClinVar
352619 1753 ClinVar
906673 1782 ClinVar
352620 1822 ClinVar
352621 1838 ClinVar
352622 1930 ClinVar
906674 1939 ClinVar
352623 1972 ClinVar
906675 1985 ClinVar
906676 2010 ClinVar
907700 2036 ClinVar
907701 2099 ClinVar
352624 2280 ClinVar
352625 2335 ClinVar
352626 2524 ClinVar
COSM6198060 1 COSMIC
COSN30504977 2 COSMIC
COSN30154453 4 COSMIC
COSN30179417 5 COSMIC
COSN508362 5 COSMIC
COSN30609210 6 COSMIC
COSN17243204 10 COSMIC
COSN30126125 11 COSMIC
COSN31491601 13 COSMIC
COSN30481665 18 COSMIC
COSN30520081 41 COSMIC
COSN31599789 42 COSMIC
COSN31569721 46 COSMIC
COSN31599779 57 COSMIC
COSN7905580 62 COSMIC
COSN31581096 64 COSMIC
COSN30491822 72 COSMIC
COSN31507603 79 COSMIC
COSN31502538 89 COSMIC
COSN31558747 89 COSMIC
COSN30524708 91 COSMIC
COSN30170295 97 COSMIC
COSN31552849 101 COSMIC
COSN31613295 108 COSMIC
COSN30457138 115 COSMIC
COSN30462775 117 COSMIC
COSN30541124 123 COSMIC
COSN30458615 124 COSMIC
COSN22195719 174 COSMIC
COSN2478413 194 COSMIC
COSN8206936 214 COSMIC
COSN25506255 215 COSMIC
COSN23025092 260 COSMIC
COSN30469663 265 COSMIC
COSN30469617 266 COSMIC
COSN2082046 371 COSMIC
COSN17355243 375 COSMIC
COSN14771171 471 COSMIC
COSN25337950 479 COSMIC
COSN16092236 527 COSMIC
COSN20102158 579 COSMIC
COSN20102159 579 COSMIC
COSN29204216 588 COSMIC
COSN15762408 604 COSMIC
COSN6871348 700 COSMIC
COSN9415483 709 COSMIC
COSN31543989 733 COSMIC
COSN31577230 761 COSMIC
COSN31542066 809 COSMIC
COSN20234537 813 COSMIC
COSN17078441 994 COSMIC
COSN9415484 1057 COSMIC
COSN20091304 1062 COSMIC
COSN15661152 1146 COSMIC
COSN15670087 1209 COSMIC
COSN15819706 1226 COSMIC
COSN31607376 1239 COSMIC
COSN30221609 1296 COSMIC
COSN31570641 1358 COSMIC
COSN31527788 1444 COSMIC
COSN28676732 1456 COSMIC
COSN25570093 1462 COSMIC
COSN27662819 1484 COSMIC
COSN30543067 1499 COSMIC
COSN14766310 1507 COSMIC
COSN31536020 1516 COSMIC
COSN31517897 1592 COSMIC
COSN5071789 1682 COSMIC
COSN31567881 1708 COSMIC
COSN17182663 1763 COSMIC
COSN9415485 1845 COSMIC
COSN5594478 1858 COSMIC
COSN30540713 1897 COSMIC
COSN31542671 1921 COSMIC
COSN31485962 1928 COSMIC
COSN2082047 1959 COSMIC
COSN30365431 2088 COSMIC
COSN4845121 2103 COSMIC
COSN2082048 2140 COSMIC
COSN24039990 2193 COSMIC
COSN2082049 2201 COSMIC
COSN2523465 2303 COSMIC
COSN19224420 2351 COSMIC
COSN27420652 2391 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs762836110 3 dbSNP
rs1443017064 7 dbSNP
rs1189282206 13 dbSNP
rs766341369 14 dbSNP
rs904521405 16 dbSNP
rs962983771 20 dbSNP
rs1241530800 27 dbSNP
rs369682969 28 dbSNP
rs1169601300 30 dbSNP
rs1375094851 31 dbSNP
rs201409177 40 dbSNP
rs1167781818 41 dbSNP
rs1204059262 42 dbSNP
rs1403608512 42 dbSNP
rs760295110 44 dbSNP
rs1356536662 52 dbSNP
rs1397261000 53 dbSNP
rs560848217 56 dbSNP
rs950728744 59 dbSNP
rs574105922 62 dbSNP
rs770608742 69 dbSNP
rs917348742 73 dbSNP
rs976995047 79 dbSNP
rs543408244 85 dbSNP
rs1447284712 88 dbSNP
rs1029465167 92 dbSNP
rs1406033395 99 dbSNP
rs950226627 104 dbSNP
rs746867194 105 dbSNP
rs927557369 112 dbSNP
rs1198173489 124 dbSNP
rs190770358 125 dbSNP
rs775983590 127 dbSNP
rs1169019303 144 dbSNP
rs879166854 152 dbSNP
rs891432109 153 dbSNP
rs1009926284 159 dbSNP
rs1246129883 170 dbSNP
rs1179238262 175 dbSNP
rs1050815890 180 dbSNP
rs941015485 184 dbSNP
rs2168775 186 dbSNP
rs1207670461 192 dbSNP
rs926392281 196 dbSNP
rs1006719604 213 dbSNP
rs886060362 214 dbSNP
rs1231097960 219 dbSNP
rs1057485453 220 dbSNP
rs917415345 222 dbSNP
rs1437881999 223 dbSNP
rs547423635 229 dbSNP
rs1321712401 232 dbSNP
rs1404524583 233 dbSNP
rs1371426642 241 dbSNP
rs946330734 242 dbSNP
rs1387215077 248 dbSNP
rs898332008 254 dbSNP
rs565859469 260 dbSNP
rs904747467 261 dbSNP
rs1000215969 262 dbSNP
rs1378824546 263 dbSNP
rs995350289 276 dbSNP
rs1196683053 279 dbSNP
rs34235595 283 dbSNP
rs1302709675 287 dbSNP
rs1025530109 293 dbSNP
rs1039687991 294 dbSNP
rs1252099370 296 dbSNP
rs547262225 296 dbSNP
rs886060363 296 dbSNP
rs899926947 296 dbSNP
rs1272808613 298 dbSNP
rs1220287407 301 dbSNP
rs886060364 303 dbSNP
rs1347788495 305 dbSNP
rs1029950118 306 dbSNP
rs951229906 308 dbSNP
rs1351268004 309 dbSNP
rs1310078263 311 dbSNP
rs1408290862 312 dbSNP
rs1004568299 317 dbSNP
rs1301690992 319 dbSNP
rs950694555 321 dbSNP
rs76047934 326 dbSNP
rs962576978 328 dbSNP
rs1173551555 330 dbSNP
rs980405513 332 dbSNP
rs1412141825 333 dbSNP
rs1183871618 336 dbSNP
rs1261991871 343 dbSNP
rs1353723859 344 dbSNP
rs1221326583 349 dbSNP
rs1289083200 350 dbSNP
rs983439258 351 dbSNP
rs1490732306 365 dbSNP
rs1261821248 372 dbSNP
rs1202096942 373 dbSNP
rs1329914270 376 dbSNP
rs1290343510 380 dbSNP
rs926256497 385 dbSNP
rs1372905522 386 dbSNP
rs960771094 387 dbSNP
rs374845401 399 dbSNP
rs541504060 402 dbSNP
rs980290226 403 dbSNP
rs1420339429 408 dbSNP
rs539475780 408 dbSNP
rs927412716 412 dbSNP
rs1388691307 413 dbSNP
rs886060365 414 dbSNP
rs1398541213 422 dbSNP
rs1406807664 425 dbSNP
rs1182737149 429 dbSNP
rs1426749191 432 dbSNP
rs140183311 434 dbSNP
rs1183490302 438 dbSNP
rs1041886081 439 dbSNP
rs926195383 442 dbSNP
rs41311749 443 dbSNP
rs1389613251 444 dbSNP
rs1290860346 445 dbSNP
rs1230301524 446 dbSNP
rs537161509 448 dbSNP
rs1374838779 453 dbSNP
rs913511801 456 dbSNP
rs945683052 457 dbSNP
rs1050784960 458 dbSNP
rs1377026358 459 dbSNP
rs1244673268 460 dbSNP
rs1165017622 470 dbSNP
rs2290732 471 dbSNP
rs1163376213 477 dbSNP
rs942404866 489 dbSNP
rs1221830661 495 dbSNP
rs1039463869 500 dbSNP
rs1480472753 501 dbSNP
rs372806449 512 dbSNP
rs1485579696 515 dbSNP
rs898295618 516 dbSNP
rs570515140 520 dbSNP
rs1440820645 549 dbSNP
rs1224010935 553 dbSNP
rs1183105798 566 dbSNP
rs1403027788 567 dbSNP
rs113406057 568 dbSNP
rs1357598049 568 dbSNP
rs748975579 568 dbSNP
rs80203789 569 dbSNP
rs1342701816 570 dbSNP
rs1297632463 571 dbSNP
rs1004065858 573 dbSNP
rs1360628428 576 dbSNP
rs1383452863 580 dbSNP
rs534982201 581 dbSNP
rs1165669366 584 dbSNP
rs1302856893 587 dbSNP
rs1002068028 588 dbSNP
rs1392483715 591 dbSNP
rs1168926279 598 dbSNP
rs1033344261 602 dbSNP
rs1460236315 610 dbSNP
rs1489903935 619 dbSNP
rs1299649439 623 dbSNP
rs1400993155 626 dbSNP
rs960383781 627 dbSNP
rs578077816 631 dbSNP
rs1025497118 634 dbSNP
rs913670039 635 dbSNP
rs1312353220 637 dbSNP
rs769792774 638 dbSNP
rs187108662 640 dbSNP
rs1282230965 643 dbSNP
rs1410111047 647 dbSNP
rs1399044164 651 dbSNP
rs1228539652 654 dbSNP
rs1461878940 655 dbSNP
rs1360266065 656 dbSNP
rs1178241024 660 dbSNP
rs1294356947 660 dbSNP
rs926102529 675 dbSNP
rs1473716212 678 dbSNP
rs1004831438 679 dbSNP
rs1024763909 687 dbSNP
rs576074789 690 dbSNP
rs975645426 691 dbSNP
rs1480234706 700 dbSNP
rs1307305461 702 dbSNP
rs1256513381 710 dbSNP
rs971423283 722 dbSNP
rs1320770139 729 dbSNP
rs574956160 730 dbSNP
rs762913227 735 dbSNP
rs934022648 745 dbSNP
rs1260358008 750 dbSNP
rs1391180175 759 dbSNP
rs1380430558 761 dbSNP
rs1339245561 762 dbSNP
rs1468743536 764 dbSNP
rs886060366 772 dbSNP
rs1203568424 796 dbSNP
rs1051509934 797 dbSNP
rs887199886 801 dbSNP
rs1181446348 805 dbSNP
rs542030537 807 dbSNP
rs1241370332 809 dbSNP
rs1034450570 813 dbSNP
rs1484256305 817 dbSNP
rs1182690353 822 dbSNP
rs957754896 827 dbSNP
rs557546790 832 dbSNP
rs1459953294 834 dbSNP
rs940074128 839 dbSNP
rs576166615 846 dbSNP
rs190302700 853 dbSNP
rs990347964 864 dbSNP
rs1258576999 865 dbSNP
rs1322670726 868 dbSNP
rs1424055351 870 dbSNP
rs141928377 882 dbSNP
rs766942549 883 dbSNP
rs1321233660 886 dbSNP
rs946320614 889 dbSNP
rs1407698598 900 dbSNP
rs1158190767 901 dbSNP
rs1002099176 906 dbSNP
rs1385596421 908 dbSNP
rs987056063 909 dbSNP
rs1165268929 912 dbSNP
rs912182011 923 dbSNP
rs1442642238 924 dbSNP
rs564873207 929 dbSNP
rs1242463525 935 dbSNP
rs41315924 938 dbSNP
rs1039838531 939 dbSNP
rs898266645 941 dbSNP
rs1204151463 946 dbSNP
rs139554086 947 dbSNP
rs1359265558 954 dbSNP
rs559414972 960 dbSNP
rs1298977235 970 dbSNP
rs369546620 972 dbSNP
rs1230321942 975 dbSNP
rs1280552727 984 dbSNP
rs931133246 985 dbSNP
rs1046912304 988 dbSNP
rs182930988 989 dbSNP
rs1387521424 990 dbSNP
rs1013417216 994 dbSNP
rs1304664477 995 dbSNP
rs879144163 1001 dbSNP
rs1046317425 1004 dbSNP
rs1210967540 1007 dbSNP
rs142860832 1010 dbSNP
rs1001568534 1021 dbSNP
rs1034835465 1022 dbSNP
rs1168401492 1026 dbSNP
rs957476517 1041 dbSNP
rs569376392 1042 dbSNP
rs563152013 1045 dbSNP
rs1020427760 1046 dbSNP
rs753466444 1048 dbSNP
rs374002978 1062 dbSNP
rs1270599805 1066 dbSNP
rs987431727 1072 dbSNP
rs531272719 1077 dbSNP
rs752538724 1084 dbSNP
rs1490282886 1086 dbSNP
rs912833570 1088 dbSNP
rs964030211 1095 dbSNP
rs1269613376 1097 dbSNP
rs1234066834 1098 dbSNP
rs552298521 1109 dbSNP
rs975133982 1111 dbSNP
rs1347541318 1116 dbSNP
rs1281594979 1121 dbSNP
rs1479964468 1124 dbSNP
rs1174210377 1125 dbSNP
rs986825462 1127 dbSNP
rs919660134 1128 dbSNP
rs1364695111 1133 dbSNP
rs931101971 1136 dbSNP
rs1329325400 1142 dbSNP
rs1411544078 1146 dbSNP
rs908528520 1164 dbSNP
rs1046801448 1165 dbSNP
rs1166736326 1173 dbSNP
rs1480474920 1175 dbSNP
rs377728451 1180 dbSNP
rs908349331 1182 dbSNP
rs1430855877 1183 dbSNP
rs949234209 1184 dbSNP
rs543428415 1186 dbSNP
rs1342908864 1187 dbSNP
rs1432472112 1199 dbSNP
rs1184448530 1201 dbSNP
rs1436515289 1205 dbSNP
rs1038398527 1208 dbSNP
rs1201592307 1213 dbSNP
rs905138699 1214 dbSNP
rs1298354490 1222 dbSNP
rs1341549633 1224 dbSNP
rs1325727344 1225 dbSNP
rs898363462 1226 dbSNP
rs1001934280 1230 dbSNP
rs1055838933 1235 dbSNP
rs1279859211 1239 dbSNP
rs549431469 1254 dbSNP
rs1220304131 1255 dbSNP
rs1333831890 1260 dbSNP
rs893145458 1266 dbSNP
rs896412103 1270 dbSNP
rs1407606853 1275 dbSNP
rs1013913945 1276 dbSNP
rs1020658989 1285 dbSNP
rs1315136696 1289 dbSNP
rs902164466 1295 dbSNP
rs1468913962 1296 dbSNP
rs1000648255 1299 dbSNP
rs1184716651 1303 dbSNP
rs1032109936 1304 dbSNP
rs1241298016 1305 dbSNP
rs570502633 1310 dbSNP
rs1286947746 1316 dbSNP
rs1317673148 1318 dbSNP
rs1490241348 1319 dbSNP
rs886060367 1320 dbSNP
rs1222340434 1324 dbSNP
rs866632459 1325 dbSNP
rs1278772854 1327 dbSNP
rs975579947 1337 dbSNP
rs1028872877 1344 dbSNP
rs1020396403 1347 dbSNP
rs534737930 1350 dbSNP
rs1008420407 1357 dbSNP
rs1407662280 1359 dbSNP
rs1164629079 1360 dbSNP
rs546995144 1368 dbSNP
rs1446906099 1373 dbSNP
rs1020271122 1375 dbSNP
rs1383929830 1381 dbSNP
rs187522588 1382 dbSNP
rs1213860459 1387 dbSNP
rs1243964763 1387 dbSNP
rs1405166967 1388 dbSNP
rs1446662150 1390 dbSNP
rs555430982 1399 dbSNP
rs975479490 1408 dbSNP
rs1246445159 1411 dbSNP
rs1361416688 1411 dbSNP
rs1312819603 1419 dbSNP
rs749987275 1422 dbSNP
rs1245220981 1423 dbSNP
rs920029056 1425 dbSNP
rs919551233 1426 dbSNP
rs952390349 1427 dbSNP
rs982466510 1431 dbSNP
rs536156782 1432 dbSNP
rs557229266 1434 dbSNP
rs949202975 1438 dbSNP
rs917740881 1441 dbSNP
rs575959204 1444 dbSNP
rs193210849 1449 dbSNP
rs1351923994 1452 dbSNP
rs528083481 1457 dbSNP
rs1184870563 1461 dbSNP
rs1475170231 1462 dbSNP
rs1437816105 1463 dbSNP
rs926530666 1477 dbSNP
rs1289378813 1481 dbSNP
rs1220684561 1485 dbSNP
rs1371303170 1487 dbSNP
rs1242463851 1491 dbSNP
rs1297020511 1495 dbSNP
rs558722133 1497 dbSNP
rs1339360491 1499 dbSNP
rs546239191 1500 dbSNP
rs998754 1507 dbSNP
rs866637020 1509 dbSNP
rs886060368 1513 dbSNP
rs540638714 1527 dbSNP
rs1000553629 1529 dbSNP
rs1169043588 1530 dbSNP
rs1291774165 1538 dbSNP
rs1430139086 1542 dbSNP
rs559313551 1549 dbSNP
rs1201823211 1557 dbSNP
rs900257498 1562 dbSNP
rs1266443045 1582 dbSNP
rs886060369 1602 dbSNP
rs1231156247 1610 dbSNP
rs903295997 1612 dbSNP
rs1316721673 1613 dbSNP
rs1178789445 1619 dbSNP
rs1224918625 1633 dbSNP
rs1008802285 1635 dbSNP
rs1343274322 1637 dbSNP
rs746881638 1643 dbSNP
rs574602367 1649 dbSNP
rs746582124 1654 dbSNP
rs886060370 1660 dbSNP
rs1008508399 1663 dbSNP
rs1296938469 1672 dbSNP
rs1016273259 1673 dbSNP
rs1406872806 1677 dbSNP
rs1178702975 1681 dbSNP
rs961584616 1682 dbSNP
rs1442411830 1686 dbSNP
rs1428861665 1696 dbSNP
rs75337618 1698 dbSNP
rs1393372440 1710 dbSNP
rs1419438907 1715 dbSNP
rs1252463699 1722 dbSNP
rs563139650 1725 dbSNP
rs1328575051 1727 dbSNP
rs959488607 1749 dbSNP
rs1449645412 1751 dbSNP
rs899999242 1752 dbSNP
rs41303356 1753 dbSNP
rs1382046357 1757 dbSNP
rs151076324 1758 dbSNP
rs1319076184 1762 dbSNP
rs1042202327 1771 dbSNP
rs1286132641 1777 dbSNP
rs952357734 1782 dbSNP
rs1384195320 1787 dbSNP
rs77720837 1795 dbSNP
rs75746434 1796 dbSNP
rs1213820150 1802 dbSNP
rs936536450 1809 dbSNP
rs1459084683 1811 dbSNP
rs982435273 1817 dbSNP
rs1401658149 1819 dbSNP
rs1015290563 1821 dbSNP
rs10059108 1822 dbSNP
rs770566138 1823 dbSNP
rs1459561120 1825 dbSNP
rs886060371 1838 dbSNP
rs995961732 1840 dbSNP
rs1204158989 1841 dbSNP
rs1245887006 1844 dbSNP
rs1385782754 1855 dbSNP
rs1185406669 1865 dbSNP
rs564215168 1871 dbSNP
rs1254923639 1874 dbSNP
rs866127115 1882 dbSNP
rs1205318388 1883 dbSNP
rs1486657570 1890 dbSNP
rs1259267498 1895 dbSNP
rs368099176 1897 dbSNP
rs926443282 1905 dbSNP
rs1474858528 1910 dbSNP
rs2290733 1930 dbSNP
rs1008829989 1935 dbSNP
rs1421918555 1937 dbSNP
rs1339912498 1949 dbSNP
rs41311747 1950 dbSNP
rs1171920979 1951 dbSNP
rs376130796 1956 dbSNP
rs915187729 1968 dbSNP
rs886060372 1972 dbSNP
rs1015675139 1985 dbSNP
rs770097153 1997 dbSNP
rs1297892066 2001 dbSNP
rs1418854426 2004 dbSNP
rs1405477098 2007 dbSNP
rs1366015080 2008 dbSNP
rs139565984 2010 dbSNP
rs961640646 2019 dbSNP
rs535774149 2020 dbSNP
rs1341370056 2021 dbSNP
rs1193301808 2022 dbSNP
rs995712615 2023 dbSNP
rs1259226083 2024 dbSNP
rs1215514109 2026 dbSNP
rs1430268693 2027 dbSNP
rs1026967163 2028 dbSNP
rs959624807 2031 dbSNP
rs1356286103 2032 dbSNP
rs73317010 2036 dbSNP
rs1319653754 2039 dbSNP
rs1229698267 2043 dbSNP
rs1219207253 2046 dbSNP
rs1041531766 2049 dbSNP
rs1262381940 2050 dbSNP
rs1345870346 2062 dbSNP
rs1304758878 2066 dbSNP
rs1321309491 2069 dbSNP
rs1403482801 2071 dbSNP
rs899970107 2072 dbSNP
rs569460050 2073 dbSNP
rs970800727 2080 dbSNP
rs1446125411 2084 dbSNP
rs1480576210 2086 dbSNP
rs978340587 2086 dbSNP
rs773306587 2087 dbSNP
rs1027174549 2091 dbSNP
rs540069540 2095 dbSNP
rs147837301 2099 dbSNP
rs1197729911 2113 dbSNP
rs1003832637 2119 dbSNP
rs189237787 2126 dbSNP
rs1274307747 2132 dbSNP
rs534722665 2138 dbSNP
rs970807727 2139 dbSNP
rs538462336 2141 dbSNP
rs1478982595 2142 dbSNP
rs1257542372 2148 dbSNP
rs1172037554 2156 dbSNP
rs1429254180 2157 dbSNP
rs149385481 2159 dbSNP
rs1325948874 2171 dbSNP
rs981857793 2174 dbSNP
rs1033867314 2177 dbSNP
rs959218868 2179 dbSNP
rs1402935419 2180 dbSNP
rs1400346244 2182 dbSNP
rs921625142 2185 dbSNP
rs552647468 2188 dbSNP
rs192225130 2191 dbSNP
rs1400440277 2194 dbSNP
rs1282362084 2197 dbSNP
rs1169367590 2201 dbSNP
rs1469943961 2205 dbSNP
rs1430969533 2207 dbSNP
rs141464277 2215 dbSNP
rs556870416 2217 dbSNP
rs1235308391 2228 dbSNP
rs1477893475 2228 dbSNP
rs1051412768 2230 dbSNP
rs1184554296 2244 dbSNP
rs1256089478 2263 dbSNP
rs1456843281 2266 dbSNP
rs1349249822 2269 dbSNP
rs1237586500 2270 dbSNP
rs915152007 2274 dbSNP
rs575186628 2280 dbSNP
rs978003985 2284 dbSNP
rs545561711 2285 dbSNP
rs35777559 2289 dbSNP
rs1261477962 2292 dbSNP
rs924598562 2294 dbSNP
rs1343987138 2303 dbSNP
rs1279953266 2305 dbSNP
rs944049723 2306 dbSNP
rs1374587166 2307 dbSNP
rs1037201144 2308 dbSNP
rs1041111254 2309 dbSNP
rs1452711429 2311 dbSNP
rs1407723208 2313 dbSNP
rs921372189 2317 dbSNP
rs1203035665 2319 dbSNP
rs563948843 2322 dbSNP
rs886060373 2335 dbSNP
rs888619045 2338 dbSNP
rs1287654967 2347 dbSNP
rs1488399218 2348 dbSNP
rs1160670794 2350 dbSNP
rs1004387539 2352 dbSNP
rs1268613107 2364 dbSNP
rs878877656 2372 dbSNP
rs1380225838 2389 dbSNP
rs995745231 2395 dbSNP
rs1037259843 2399 dbSNP
rs528531605 2401 dbSNP
rs1209630324 2413 dbSNP
rs1447820251 2414 dbSNP
rs1027207430 2419 dbSNP
rs1218524095 2422 dbSNP
rs1351308550 2424 dbSNP
rs540771612 2426 dbSNP
rs1201566574 2431 dbSNP
rs1246677915 2436 dbSNP
rs895379034 2440 dbSNP
rs1003646439 2456 dbSNP
rs1446763141 2457 dbSNP
rs536520286 2465 dbSNP
rs1024943888 2468 dbSNP
rs1418233277 2469 dbSNP
rs1360342102 2473 dbSNP
rs554920205 2478 dbSNP
rs959419488 2479 dbSNP
rs978166189 2482 dbSNP
rs1010740804 2512 dbSNP
rs561930118 2516 dbSNP
rs966538791 2518 dbSNP
rs977972839 2523 dbSNP
rs567624810 2524 dbSNP
rs1301841968 2526 dbSNP
rs774807571 2532 dbSNP
rs1334680872 2533 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acaUGUCGUCCGUGUCUGUCc 5'
             | || :|| : |||::| 
Target 5' agaAAAGAGGGGGAAGAUGGu 3'
10 - 30
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000428797.2 | 3UTR | GAAUGAGAGAGAAAAGAGGGGGAAGAUGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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