pre-miRNA Information
pre-miRNA hsa-mir-6839   
Genomic Coordinates chr7: 64679064 - 64679176
Description Homo sapiens miR-6839 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6839-3p
Sequence 92| UUGGGUUUUCUCUUCAAUCCAG |113
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN15661209 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1426245091 3 dbSNP
rs533324498 6 dbSNP
rs1169594864 16 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ERGIC2   
Synonyms CDA14, Erv41, PTX1, cd002
Description ERGIC and golgi 2
Transcript NM_016570   
Expression
Putative miRNA Targets on ERGIC2
3'UTR of ERGIC2
(miRNA target sites are highlighted)
>ERGIC2|NM_016570|3'UTR
   1 CACCTCCCGATTGAAGGAGAAAAACTTTTTGCCTGAGACATAAAACCTTTTTTTAATAATAAAATATTGTGCAATATATT
  81 CAAAGAAAAGAAAACACAAATAAGCAGAAAACATACTTATTTTAAAAAAGAAAAAAAAGGATAAAAAAACCCAAACTGAA
 161 ATTCTATATACGTTGTGTCTGTTACAAATGTCGTAGAAGAAATCATGCAGCTAAACGATGAAGAAGCCCAACTGGAGTGT
 241 TGCTTTGAAGATGACGCCTTCTTATATTTTCATAGCAAATGGGTGGTATCAAAATCAGACATTGCTTCTTGCTGATAAAA
 321 AGCCTGAAGGAAATAAGTGAAACTACATCTATGGGAAAAAAAAAAACATTGAGAAGTGCAAATGTTCGCATCCTTTTGTT
 401 TTTAAAAGATATGATGTCAGAATAAAATGTGGAAAACATACGGAAAACTAGTCTAGACTTTAAAGAATTGTGATCAGGTC
 481 ACATTGTTAATAAAAAAAAAAAACGGGCTAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaCCUAACUUCUCUUUUGGGUu 5'
            ||||  || | |||||||| 
Target 5' aaGGAT--AA-A-AAAACCCAa 3'
137 - 154 154.00 -11.70
2
miRNA  3' gaccuaaCUUCUCUUUUGGGUu 5'
                 || || :||:|||| 
Target 5' gctaaacGATGAAGAAGCCCAa 3'
210 - 231 139.00 -13.20
3
miRNA  3' gaccUAA----CUUCUCUUUUGGGUu 5'
              |||    ||| ||||||| || 
Target 5' atatATTCAAAGAAAAGAAAACACAa 3'
74 - 99 136.00 -9.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19692803 45 COSMIC
COSN31582935 58 COSMIC
COSN30137195 81 COSMIC
COSN30130638 85 COSMIC
COSN31583179 90 COSMIC
COSN31586005 92 COSMIC
COSN1146893 130 COSMIC
COSN31555612 130 COSMIC
COSN30567911 142 COSMIC
COSN20071427 143 COSMIC
COSN24386864 143 COSMIC
COSN30129756 256 COSMIC
COSN25600074 279 COSMIC
COSN31522834 287 COSMIC
COSN29103476 355 COSMIC
COSN25308873 356 COSMIC
COSN29030854 356 COSMIC
COSN30760726 371 COSMIC
COSN26647023 387 COSMIC
COSN26561371 441 COSMIC
COSN27379637 491 COSMIC
COSN27543421 492 COSMIC
COSN31567463 496 COSMIC
COSN14615622 539 COSMIC
COSN28431780 863 COSMIC
COSN29505460 1215 COSMIC
COSN7325685 1772 COSMIC
COSN20752772 1808 COSMIC
COSN8708364 2296 COSMIC
COSN20288148 2352 COSMIC
COSN5715413 2499 COSMIC
COSN1569435 2582 COSMIC
COSN28033898 2750 COSMIC
COSN21702239 2959 COSMIC
COSN22144131 3163 COSMIC
COSN16072606 3379 COSMIC
rs966541 2561 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1197351220 1 dbSNP
rs772717397 4 dbSNP
rs771535014 6 dbSNP
rs761680960 7 dbSNP
rs529996666 8 dbSNP
rs768448921 9 dbSNP
rs749176009 11 dbSNP
rs1246423070 12 dbSNP
rs1226290942 13 dbSNP
rs779982220 16 dbSNP
rs1306947663 24 dbSNP
rs771293037 28 dbSNP
rs35174441 31 dbSNP
rs559390626 31 dbSNP
rs1217305848 33 dbSNP
rs1277651634 34 dbSNP
rs1298754392 39 dbSNP
rs1463603553 43 dbSNP
rs1308366594 46 dbSNP
rs1305015579 47 dbSNP
rs1200700597 55 dbSNP
rs1430422967 60 dbSNP
rs888083150 67 dbSNP
rs926729636 70 dbSNP
rs547329022 77 dbSNP
rs981323041 79 dbSNP
rs1477306287 80 dbSNP
rs1191044506 90 dbSNP
rs1420652057 93 dbSNP
rs1428758823 98 dbSNP
rs949541943 100 dbSNP
rs994347671 109 dbSNP
rs1464695323 113 dbSNP
rs140632144 114 dbSNP
rs531994729 119 dbSNP
rs1351614445 120 dbSNP
rs1434199740 124 dbSNP
rs1363268654 127 dbSNP
rs988372841 133 dbSNP
rs956980887 139 dbSNP
rs896890079 140 dbSNP
rs1317495838 142 dbSNP
rs1041644051 143 dbSNP
rs944187350 146 dbSNP
rs1450451885 148 dbSNP
rs1221401604 150 dbSNP
rs1243057739 150 dbSNP
rs1177047830 151 dbSNP
rs564608668 166 dbSNP
rs1421076359 168 dbSNP
rs1415265167 170 dbSNP
rs1477288926 170 dbSNP
rs761304614 171 dbSNP
rs775376696 172 dbSNP
rs534411795 174 dbSNP
rs765583271 175 dbSNP
rs1296080464 178 dbSNP
rs1340200899 179 dbSNP
rs865821829 185 dbSNP
rs978102788 187 dbSNP
rs890943001 189 dbSNP
rs114508457 192 dbSNP
rs371258352 193 dbSNP
rs111537312 199 dbSNP
rs1285635428 202 dbSNP
rs1231601306 207 dbSNP
rs994038268 211 dbSNP
rs191149802 216 dbSNP
rs73273359 217 dbSNP
rs992622378 218 dbSNP
rs1038065133 219 dbSNP
rs572655979 231 dbSNP
rs1238736427 232 dbSNP
rs1471497018 235 dbSNP
rs1162100643 239 dbSNP
rs1408678460 240 dbSNP
rs959831421 242 dbSNP
rs1034242419 243 dbSNP
rs942058330 254 dbSNP
rs759796513 255 dbSNP
rs879125952 256 dbSNP
rs185955950 258 dbSNP
rs753450726 264 dbSNP
rs1336355142 265 dbSNP
rs1299767074 281 dbSNP
rs1447445862 286 dbSNP
rs949471890 287 dbSNP
rs1356540310 288 dbSNP
rs1238536987 295 dbSNP
rs1348346375 300 dbSNP
rs538991457 301 dbSNP
rs1425660287 306 dbSNP
rs1387530227 314 dbSNP
rs1200700112 316 dbSNP
rs1177186459 322 dbSNP
rs1370549888 332 dbSNP
rs1306719827 333 dbSNP
rs1418961210 338 dbSNP
rs1251870020 346 dbSNP
rs758501091 347 dbSNP
rs1487252403 348 dbSNP
rs1238233608 355 dbSNP
rs578054000 356 dbSNP
rs1176626968 357 dbSNP
rs1222821574 362 dbSNP
rs748465306 367 dbSNP
rs770210175 367 dbSNP
rs1361299885 368 dbSNP
rs979479337 372 dbSNP
rs781561501 376 dbSNP
rs879408466 378 dbSNP
rs1018382740 379 dbSNP
rs1336218766 386 dbSNP
rs1309133101 387 dbSNP
rs1393215274 388 dbSNP
rs1365636768 393 dbSNP
rs1309115554 404 dbSNP
rs986513351 408 dbSNP
rs1253126583 411 dbSNP
rs1372341132 412 dbSNP
rs955159977 413 dbSNP
rs1019323477 414 dbSNP
rs1342509536 417 dbSNP
rs1199466955 430 dbSNP
rs1258146990 438 dbSNP
rs771399732 441 dbSNP
rs1485660397 442 dbSNP
rs1237545464 449 dbSNP
rs993962818 453 dbSNP
rs1200808756 459 dbSNP
rs1375665806 466 dbSNP
rs1477826288 472 dbSNP
rs962922190 482 dbSNP
rs1256181883 488 dbSNP
rs77623412 491 dbSNP
rs77413977 492 dbSNP
rs1464181302 495 dbSNP
rs1016862837 504 dbSNP
rs1176548229 504 dbSNP
rs1330731520 504 dbSNP
rs1395933843 504 dbSNP
rs879735798 504 dbSNP
rs1008410083 505 dbSNP
rs1483951900 510 dbSNP
rs556627964 512 dbSNP
rs113590327 519 dbSNP
rs1405928547 524 dbSNP
rs1256164365 528 dbSNP
rs1237907708 529 dbSNP
rs1314871533 534 dbSNP
rs538330306 546 dbSNP
rs889931371 556 dbSNP
rs1050024578 566 dbSNP
rs1290029615 585 dbSNP
rs1001885037 590 dbSNP
rs905174533 591 dbSNP
rs1354804211 592 dbSNP
rs528728122 610 dbSNP
rs1426100874 611 dbSNP
rs1476959919 621 dbSNP
rs1311140579 628 dbSNP
rs1170129372 630 dbSNP
rs904095107 637 dbSNP
rs73273355 639 dbSNP
rs1292251092 641 dbSNP
rs1390491200 645 dbSNP
rs945355344 653 dbSNP
rs1300402663 658 dbSNP
rs1342051709 660 dbSNP
rs1216349749 669 dbSNP
rs1277027286 670 dbSNP
rs1288456158 672 dbSNP
rs367777872 679 dbSNP
rs1451932052 684 dbSNP
rs1365891986 686 dbSNP
rs992174033 690 dbSNP
rs938535908 691 dbSNP
rs1355522799 712 dbSNP
rs1416248790 716 dbSNP
rs181576652 723 dbSNP
rs7312956 736 dbSNP
rs1043967285 737 dbSNP
rs1256285534 744 dbSNP
rs1256986553 746 dbSNP
rs1204157648 748 dbSNP
rs942987190 751 dbSNP
rs1368436753 752 dbSNP
rs910882147 758 dbSNP
rs979893616 759 dbSNP
rs986439607 759 dbSNP
rs1397786244 767 dbSNP
rs1209195606 770 dbSNP
rs1333892160 772 dbSNP
rs918353361 779 dbSNP
rs1379419139 780 dbSNP
rs1246923250 794 dbSNP
rs972509551 794 dbSNP
rs962560524 797 dbSNP
rs1240705211 801 dbSNP
rs1287896777 811 dbSNP
rs1351180261 815 dbSNP
rs565930454 819 dbSNP
rs1484341560 820 dbSNP
rs763494731 820 dbSNP
rs547396736 822 dbSNP
rs1255489850 836 dbSNP
rs760135179 840 dbSNP
rs1378878566 841 dbSNP
rs1419536145 844 dbSNP
rs1017202806 847 dbSNP
rs1294993370 849 dbSNP
rs1001456840 862 dbSNP
rs374469918 863 dbSNP
rs772391221 866 dbSNP
rs1381314260 877 dbSNP
rs1447460454 882 dbSNP
rs1311301363 891 dbSNP
rs1374541488 896 dbSNP
rs1223040280 903 dbSNP
rs1301715189 924 dbSNP
rs748844302 926 dbSNP
rs56186786 929 dbSNP
rs1208201432 941 dbSNP
rs1255520949 943 dbSNP
rs1458233575 945 dbSNP
rs1200584467 958 dbSNP
rs1023605999 962 dbSNP
rs1439621591 963 dbSNP
rs532302144 966 dbSNP
rs1013611324 969 dbSNP
rs564524647 975 dbSNP
rs1404746902 979 dbSNP
rs1052506037 988 dbSNP
rs1046469 989 dbSNP
rs531303802 998 dbSNP
rs779490443 1001 dbSNP
rs1441375097 1005 dbSNP
rs904019881 1016 dbSNP
rs1369415242 1026 dbSNP
rs560825614 1028 dbSNP
rs543169021 1043 dbSNP
rs147226753 1049 dbSNP
rs1318835853 1058 dbSNP
rs1220619810 1064 dbSNP
rs1191918356 1070 dbSNP
rs1437777321 1101 dbSNP
rs1222862250 1105 dbSNP
rs1248847699 1110 dbSNP
rs1426362521 1111 dbSNP
rs755791424 1112 dbSNP
rs11050204 1115 dbSNP
rs1188818788 1118 dbSNP
rs1477940096 1120 dbSNP
rs567015376 1127 dbSNP
rs933668712 1128 dbSNP
rs1420761111 1135 dbSNP
rs1467824123 1153 dbSNP
rs760726781 1161 dbSNP
rs972489236 1164 dbSNP
rs1302305770 1167 dbSNP
rs1341429255 1182 dbSNP
rs190092506 1187 dbSNP
rs1276386132 1198 dbSNP
rs1338777686 1205 dbSNP
rs1250829654 1206 dbSNP
rs1229414107 1207 dbSNP
rs1292698823 1207 dbSNP
rs1320410365 1210 dbSNP
rs1001802725 1236 dbSNP
rs578259360 1248 dbSNP
rs909708180 1249 dbSNP
rs1488420651 1250 dbSNP
rs1195346507 1254 dbSNP
rs556592040 1258 dbSNP
rs544618222 1273 dbSNP
rs1298547332 1275 dbSNP
rs1415961055 1284 dbSNP
rs969960491 1289 dbSNP
rs1162715515 1290 dbSNP
rs1369200210 1291 dbSNP
rs1421782677 1293 dbSNP
rs1326008823 1306 dbSNP
rs1024242009 1317 dbSNP
rs78816893 1326 dbSNP
rs1286023879 1328 dbSNP
rs1377702008 1332 dbSNP
rs555594707 1336 dbSNP
rs1245807938 1341 dbSNP
rs1287196281 1343 dbSNP
rs1356239247 1345 dbSNP
rs536418978 1349 dbSNP
rs1396495861 1357 dbSNP
rs1281758676 1377 dbSNP
rs960678628 1382 dbSNP
rs1187713249 1385 dbSNP
rs1166663577 1387 dbSNP
rs77221829 1388 dbSNP
rs879253453 1394 dbSNP
rs1182864753 1398 dbSNP
rs1031050086 1405 dbSNP
rs1380705212 1405 dbSNP
rs999610837 1407 dbSNP
rs1391504909 1410 dbSNP
rs1384606516 1421 dbSNP
rs903945561 1424 dbSNP
rs779111606 1426 dbSNP
rs1357433269 1453 dbSNP
rs1453460806 1454 dbSNP
rs1250882439 1460 dbSNP
rs1310693159 1468 dbSNP
rs781012208 1468 dbSNP
rs1451973071 1475 dbSNP
rs565714737 1475 dbSNP
rs1279325568 1480 dbSNP
rs1007487176 1487 dbSNP
rs575612957 1488 dbSNP
rs1280171706 1504 dbSNP
rs934265695 1511 dbSNP
rs1202455459 1526 dbSNP
rs1194027633 1527 dbSNP
rs1344364413 1528 dbSNP
rs1275500550 1534 dbSNP
rs568004226 1546 dbSNP
rs1233817838 1547 dbSNP
rs1478482566 1556 dbSNP
rs1174493890 1559 dbSNP
rs1427433732 1561 dbSNP
rs1346064841 1562 dbSNP
rs1332121359 1565 dbSNP
rs1276966923 1570 dbSNP
rs1445134820 1575 dbSNP
rs771389991 1578 dbSNP
rs1331996658 1584 dbSNP
rs1233554904 1589 dbSNP
rs896822961 1598 dbSNP
rs1320937345 1599 dbSNP
rs1335556539 1600 dbSNP
rs1037138615 1606 dbSNP
rs1327375951 1611 dbSNP
rs1412259311 1620 dbSNP
rs1371834224 1627 dbSNP
rs1168729662 1646 dbSNP
rs1459045934 1646 dbSNP
rs941084900 1650 dbSNP
rs1433698218 1652 dbSNP
rs1200695081 1661 dbSNP
rs1392805663 1675 dbSNP
rs1223758025 1679 dbSNP
rs1427543453 1680 dbSNP
rs909623990 1684 dbSNP
rs1171490039 1691 dbSNP
rs1425780295 1698 dbSNP
rs1460942857 1709 dbSNP
rs1167789720 1726 dbSNP
rs979932481 1729 dbSNP
rs763332425 1730 dbSNP
rs1478205566 1731 dbSNP
rs1363046773 1732 dbSNP
rs1179538282 1737 dbSNP
rs1321986318 1738 dbSNP
rs1484025175 1739 dbSNP
rs1343319448 1744 dbSNP
rs1403892532 1747 dbSNP
rs948523074 1753 dbSNP
rs751249627 1756 dbSNP
rs1210339388 1760 dbSNP
rs1484732995 1772 dbSNP
rs1319335673 1774 dbSNP
rs917111620 1774 dbSNP
rs1356957803 1775 dbSNP
rs142503158 1777 dbSNP
rs1266431690 1784 dbSNP
rs1490248403 1792 dbSNP
rs1220053253 1806 dbSNP
rs955977646 1814 dbSNP
rs1030970104 1817 dbSNP
rs34392961 1824 dbSNP
rs1192525861 1846 dbSNP
rs1369618010 1847 dbSNP
rs1278184620 1849 dbSNP
rs1459889154 1852 dbSNP
rs1162078602 1858 dbSNP
rs73273351 1860 dbSNP
rs1319855509 1861 dbSNP
rs374671871 1873 dbSNP
rs1423642156 1893 dbSNP
rs968137937 1895 dbSNP
rs1022813333 1896 dbSNP
rs1312812157 1897 dbSNP
rs531217792 1898 dbSNP
rs1007002645 1900 dbSNP
rs1341006462 1908 dbSNP
rs1246813170 1910 dbSNP
rs1289357560 1910 dbSNP
rs889931618 1911 dbSNP
rs1029822842 1919 dbSNP
rs773512006 1920 dbSNP
rs1036660363 1922 dbSNP
rs567323783 1936 dbSNP
rs888148927 1938 dbSNP
rs186171993 1943 dbSNP
rs1385030873 1944 dbSNP
rs527412944 1947 dbSNP
rs1160818502 1951 dbSNP
rs202059724 1953 dbSNP
rs1346656376 1958 dbSNP
rs1451100986 1959 dbSNP
rs560508623 1963 dbSNP
rs948491707 1966 dbSNP
rs1454531495 1970 dbSNP
rs1312892664 1979 dbSNP
rs1381913832 1981 dbSNP
rs1240692154 1991 dbSNP
rs917081294 1996 dbSNP
rs1315367931 1999 dbSNP
rs992671501 2002 dbSNP
rs1256697919 2004 dbSNP
rs1484249508 2007 dbSNP
rs12311187 2012 dbSNP
rs924543363 2014 dbSNP
rs972815116 2016 dbSNP
rs34303590 2023 dbSNP
rs961039596 2030 dbSNP
rs1019389220 2031 dbSNP
rs74078140 2037 dbSNP
rs181487528 2044 dbSNP
rs759886339 2045 dbSNP
rs1470690567 2049 dbSNP
rs953761241 2051 dbSNP
rs1405341451 2055 dbSNP
rs1474237163 2058 dbSNP
rs1299675433 2061 dbSNP
rs1370859879 2069 dbSNP
rs544581509 2072 dbSNP
rs573972591 2081 dbSNP
rs781391517 2089 dbSNP
rs7305232 2090 dbSNP
rs761103986 2091 dbSNP
rs1262524816 2099 dbSNP
rs1009995645 2106 dbSNP
rs1231547280 2107 dbSNP
rs896461099 2108 dbSNP
rs1480537827 2112 dbSNP
rs1192103210 2115 dbSNP
rs1267690437 2125 dbSNP
rs1056371517 2132 dbSNP
rs16934161 2148 dbSNP
rs1330261592 2151 dbSNP
rs1293163656 2169 dbSNP
rs189000953 2170 dbSNP
rs1376311694 2171 dbSNP
rs926702855 2180 dbSNP
rs1441260292 2185 dbSNP
rs1044249031 2186 dbSNP
rs931122732 2188 dbSNP
rs185788628 2197 dbSNP
rs1403261758 2198 dbSNP
rs1282761412 2200 dbSNP
rs1016247394 2205 dbSNP
rs749342712 2205 dbSNP
rs1216379628 2210 dbSNP
rs553683321 2215 dbSNP
rs972649556 2216 dbSNP
rs1307418677 2218 dbSNP
rs1222850575 2224 dbSNP
rs1294334713 2229 dbSNP
rs1490740385 2236 dbSNP
rs1344309779 2237 dbSNP
rs888108499 2242 dbSNP
rs1477891240 2250 dbSNP
rs1187733686 2253 dbSNP
rs1417376056 2257 dbSNP
rs1409241398 2269 dbSNP
rs961355291 2295 dbSNP
rs772655656 2301 dbSNP
rs986455213 2309 dbSNP
rs953813141 2319 dbSNP
rs1028033582 2321 dbSNP
rs1012640569 2323 dbSNP
rs1268475419 2333 dbSNP
rs1164075026 2338 dbSNP
rs1001446756 2340 dbSNP
rs1222189873 2349 dbSNP
rs895572623 2349 dbSNP
rs1290632768 2352 dbSNP
rs968214773 2357 dbSNP
rs1217327583 2367 dbSNP
rs1182576800 2369 dbSNP
rs1475060135 2372 dbSNP
rs1182325803 2374 dbSNP
rs182089045 2381 dbSNP
rs1442585633 2384 dbSNP
rs1162686632 2392 dbSNP
rs748563243 2401 dbSNP
rs1246359331 2403 dbSNP
rs924495806 2406 dbSNP
rs1344648360 2412 dbSNP
rs1449432769 2444 dbSNP
rs1317840224 2445 dbSNP
rs1009843673 2446 dbSNP
rs1043344916 2449 dbSNP
rs947363529 2462 dbSNP
rs915218046 2471 dbSNP
rs1225073861 2474 dbSNP
rs878967114 2476 dbSNP
rs571169796 2477 dbSNP
rs985433866 2478 dbSNP
rs1459911909 2499 dbSNP
rs1182764517 2501 dbSNP
rs556056346 2505 dbSNP
rs1156999436 2511 dbSNP
rs1364097015 2511 dbSNP
rs1459449949 2511 dbSNP
rs202108442 2511 dbSNP
rs1407505503 2516 dbSNP
rs868349030 2519 dbSNP
rs537424049 2525 dbSNP
rs567132214 2526 dbSNP
rs769267668 2528 dbSNP
rs922706693 2529 dbSNP
rs747009361 2530 dbSNP
rs780160830 2530 dbSNP
rs1324091917 2531 dbSNP
rs1291401539 2535 dbSNP
rs905289666 2547 dbSNP
rs1223652643 2551 dbSNP
rs1049103322 2559 dbSNP
rs931156244 2560 dbSNP
rs966541 2561 dbSNP
rs1037255991 2562 dbSNP
rs1015802994 2564 dbSNP
rs1232590236 2573 dbSNP
rs1480879899 2575 dbSNP
rs1294880449 2580 dbSNP
rs1006210450 2581 dbSNP
rs939986138 2582 dbSNP
rs1365617363 2591 dbSNP
rs953001394 2593 dbSNP
rs1022600601 2595 dbSNP
rs867590057 2611 dbSNP
rs1334815462 2613 dbSNP
rs1012609519 2615 dbSNP
rs1284687144 2617 dbSNP
rs895541186 2626 dbSNP
rs1056887119 2645 dbSNP
rs1251858603 2660 dbSNP
rs1341383004 2660 dbSNP
rs1193920684 2664 dbSNP
rs998626677 2667 dbSNP
rs1490583491 2668 dbSNP
rs1201796671 2675 dbSNP
rs1325031720 2676 dbSNP
rs527390038 2680 dbSNP
rs1193982741 2687 dbSNP
rs986465126 2689 dbSNP
rs1167700951 2702 dbSNP
rs1366543750 2706 dbSNP
rs947258195 2706 dbSNP
rs1304639526 2707 dbSNP
rs566563858 2708 dbSNP
rs1403872042 2711 dbSNP
rs953657292 2712 dbSNP
rs910471676 2714 dbSNP
rs921028186 2716 dbSNP
rs1478373583 2717 dbSNP
rs1049693322 2720 dbSNP
rs966540 2721 dbSNP
rs922629880 2723 dbSNP
rs1224399759 2726 dbSNP
rs1165399287 2728 dbSNP
rs189617888 2730 dbSNP
rs184136466 2754 dbSNP
rs1205800770 2757 dbSNP
rs1021151458 2758 dbSNP
rs1263857800 2761 dbSNP
rs1388435799 2768 dbSNP
rs988708350 2769 dbSNP
rs941849813 2775 dbSNP
rs1252752744 2776 dbSNP
rs1035195499 2782 dbSNP
rs940155657 2789 dbSNP
rs148415006 2798 dbSNP
rs34069273 2800 dbSNP
rs1457047941 2803 dbSNP
rs1288947723 2812 dbSNP
rs1386427384 2814 dbSNP
rs908670197 2817 dbSNP
rs1319853597 2824 dbSNP
rs1383433354 2827 dbSNP
rs1247967824 2829 dbSNP
rs1312566863 2833 dbSNP
rs116731771 2835 dbSNP
rs191689852 2838 dbSNP
rs1239977402 2846 dbSNP
rs1262593364 2848 dbSNP
rs953054926 2850 dbSNP
rs756988013 2864 dbSNP
rs1023238322 2868 dbSNP
rs991771731 2875 dbSNP
rs905176574 2881 dbSNP
rs1182147471 2884 dbSNP
rs1028175249 2891 dbSNP
rs1384930500 2894 dbSNP
rs1422913722 2908 dbSNP
rs1159444350 2915 dbSNP
rs1365148780 2916 dbSNP
rs1204465419 2917 dbSNP
rs1306369518 2920 dbSNP
rs1271906930 2923 dbSNP
rs1157755645 2924 dbSNP
rs1230130570 2927 dbSNP
rs1342506031 2928 dbSNP
rs994955837 2930 dbSNP
rs1302406330 2935 dbSNP
rs1454442183 2941 dbSNP
rs897893266 2943 dbSNP
rs959674235 2953 dbSNP
rs1378108419 2955 dbSNP
rs11050203 2958 dbSNP
rs999001712 2960 dbSNP
rs902939391 2963 dbSNP
rs939808872 2974 dbSNP
rs1441441268 2975 dbSNP
rs1368764681 2982 dbSNP
rs1227931454 2983 dbSNP
rs1263772117 2983 dbSNP
rs1326288569 2983 dbSNP
rs35726730 2983 dbSNP
rs76812793 2983 dbSNP
rs1252299662 2984 dbSNP
rs1310001627 2984 dbSNP
rs1416876423 2987 dbSNP
rs1430646142 2988 dbSNP
rs1157772435 2989 dbSNP
rs144469667 2993 dbSNP
rs1470927146 2995 dbSNP
rs1011425648 2996 dbSNP
rs866100758 3003 dbSNP
rs891053559 3004 dbSNP
rs1462368948 3009 dbSNP
rs1050291554 3012 dbSNP
rs1177100141 3013 dbSNP
rs1371473358 3023 dbSNP
rs558434626 3025 dbSNP
rs933279787 3027 dbSNP
rs1221729375 3034 dbSNP
rs1278617610 3036 dbSNP
rs1308585554 3038 dbSNP
rs1050969835 3043 dbSNP
rs901174263 3045 dbSNP
rs1483098724 3047 dbSNP
rs932323035 3050 dbSNP
rs920954735 3051 dbSNP
rs1481156150 3054 dbSNP
rs1196650251 3056 dbSNP
rs777395230 3057 dbSNP
rs946519904 3058 dbSNP
rs186905474 3062 dbSNP
rs1267527023 3070 dbSNP
rs913640069 3074 dbSNP
rs988329497 3075 dbSNP
rs908644985 3082 dbSNP
rs1410454448 3085 dbSNP
rs960827808 3090 dbSNP
rs1374947245 3108 dbSNP
rs1367677027 3110 dbSNP
rs12318027 3111 dbSNP
rs916103524 3112 dbSNP
rs1363270801 3115 dbSNP
rs991735742 3119 dbSNP
rs1293903612 3129 dbSNP
rs1467807419 3130 dbSNP
rs1360084626 3139 dbSNP
rs1158910585 3145 dbSNP
rs1292141280 3148 dbSNP
rs1490735660 3153 dbSNP
rs1471894146 3155 dbSNP
rs1414746096 3156 dbSNP
rs1486172585 3157 dbSNP
rs758405566 3158 dbSNP
rs1472611470 3160 dbSNP
rs140111658 3164 dbSNP
rs977116221 3166 dbSNP
rs1163964872 3177 dbSNP
rs1387326945 3178 dbSNP
rs146128801 3182 dbSNP
rs184394926 3186 dbSNP
rs1027686432 3187 dbSNP
rs1484063352 3195 dbSNP
rs995242487 3201 dbSNP
rs537736935 3202 dbSNP
rs1365097872 3206 dbSNP
rs897910240 3207 dbSNP
rs1326835907 3208 dbSNP
rs1011769303 3209 dbSNP
rs1226219917 3210 dbSNP
rs1288554781 3215 dbSNP
rs755106075 3218 dbSNP
rs573921626 3226 dbSNP
rs1447128548 3235 dbSNP
rs1015386364 3236 dbSNP
rs555014417 3247 dbSNP
rs1339912449 3253 dbSNP
rs1464341777 3271 dbSNP
rs1028817411 3295 dbSNP
rs561542566 3297 dbSNP
rs1162936809 3304 dbSNP
rs890939459 3308 dbSNP
rs1408943937 3310 dbSNP
rs901771457 3310 dbSNP
rs1050896691 3314 dbSNP
rs1388569261 3315 dbSNP
rs1453931389 3318 dbSNP
rs932583149 3323 dbSNP
rs1455922059 3327 dbSNP
rs1447734815 3330 dbSNP
rs1283279732 3334 dbSNP
rs576187891 3335 dbSNP
rs1391315872 3338 dbSNP
rs1224979401 3341 dbSNP
rs940051682 3346 dbSNP
rs1043439515 3348 dbSNP
rs946337217 3364 dbSNP
rs192237184 3377 dbSNP
rs1264897998 3379 dbSNP
rs753900526 3383 dbSNP
rs988267649 3384 dbSNP
rs939541936 3401 dbSNP
rs931425652 3403 dbSNP
rs928162907 3414 dbSNP
rs1233726769 3418 dbSNP
rs980894173 3434 dbSNP
rs752157250 3435 dbSNP
rs1411283918 3438 dbSNP
rs547792223 3439 dbSNP
rs916071081 3443 dbSNP
rs969648609 3447 dbSNP
rs1404502906 3449 dbSNP
rs920804098 3450 dbSNP
rs973435156 3451 dbSNP
rs1329894424 3461 dbSNP
rs962323378 3462 dbSNP
rs1015025952 3466 dbSNP
rs188291972 3471 dbSNP
rs1285934247 3480 dbSNP
rs1009008710 3481 dbSNP
rs928890003 3485 dbSNP
rs557956928 3491 dbSNP
rs1256356099 3492 dbSNP
rs78635729 3498 dbSNP
rs1264999388 3511 dbSNP
rs117218549 3516 dbSNP
rs1269825876 3525 dbSNP
rs989909180 3526 dbSNP
rs899751925 3533 dbSNP
rs931915316 3537 dbSNP
rs548605820 3544 dbSNP
rs1203231183 3552 dbSNP
rs1044001788 3558 dbSNP
rs1251335993 3558 dbSNP
rs1028745499 3578 dbSNP
rs1376442588 3580 dbSNP
rs1010585087 3581 dbSNP
rs1168883538 3584 dbSNP
rs138469199 3593 dbSNP
rs1433222299 3594 dbSNP
rs760758633 3596 dbSNP
rs965907859 3608 dbSNP
rs1284583055 3610 dbSNP
rs1321712136 3613 dbSNP
rs1373436389 3614 dbSNP
rs939134069 3615 dbSNP
rs927711487 3617 dbSNP
rs750831556 3618 dbSNP
rs562365123 3619 dbSNP
rs1048906959 3620 dbSNP
rs1165528296 3620 dbSNP
rs995555559 3623 dbSNP
rs894565222 3628 dbSNP
rs1045210982 3629 dbSNP
rs948187394 3644 dbSNP
rs1168337197 3645 dbSNP
rs1389184531 3653 dbSNP
rs1055948409 3654 dbSNP
rs938843657 3656 dbSNP
rs767739042 3669 dbSNP
rs1385716296 3675 dbSNP
rs529558283 3676 dbSNP
rs1328128783 3698 dbSNP
rs974038022 3708 dbSNP
rs962302095 3711 dbSNP
rs80197179 3720 dbSNP
rs1296510338 3722 dbSNP
rs1447333526 3728 dbSNP
rs1041954625 3730 dbSNP
rs1355780493 3730 dbSNP
rs577621480 3730 dbSNP
rs1249644897 3732 dbSNP
rs1189046083 3735 dbSNP
rs1450824924 3739 dbSNP
rs946325803 3741 dbSNP
rs1188335345 3742 dbSNP
rs202120557 3746 dbSNP
rs57708742 3747 dbSNP
rs914210203 3747 dbSNP
rs10645613 3748 dbSNP
rs79976765 3748 dbSNP
rs953110321 3749 dbSNP
rs990226253 3749 dbSNP
rs1158631084 3751 dbSNP
rs1457033145 3751 dbSNP
rs200624755 3751 dbSNP
rs1390766540 3753 dbSNP
rs1432757216 3753 dbSNP
rs1211586497 3755 dbSNP
rs1357094820 3757 dbSNP
rs921699317 3763 dbSNP
rs975834904 3768 dbSNP
rs965834723 3773 dbSNP
rs1015213032 3779 dbSNP
rs907895749 3783 dbSNP
rs1239875562 3789 dbSNP
rs1262502592 3797 dbSNP
rs987460235 3799 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaCCUAACUUCUCUUUUGgguu 5'
            ||||  || | |||||    
Target 5' aaGGAU--AA-A-AAAAC---- 3'
12 - 25
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000360150.4 | 3UTR | AAAAGAAAAAAAAGGAUAAAAAAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
62 hsa-miR-6839-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059162 TXNIP thioredoxin interacting protein 2 2
MIRT064872 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT065802 HOXC8 homeobox C8 2 4
MIRT106005 SDCBP syndecan binding protein 2 2
MIRT275773 TFDP1 transcription factor Dp-1 2 2
MIRT314032 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 2
MIRT360277 HIST1H2BE histone cluster 1 H2B family member e 2 8
MIRT360301 HIST1H2BH histone cluster 1 H2B family member h 2 2
MIRT450086 OR2A4 olfactory receptor family 2 subfamily A member 4 2 2
MIRT468815 RSRC2 arginine and serine rich coiled-coil 2 2 6
MIRT475093 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT477575 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
MIRT483926 LCORL ligand dependent nuclear receptor corepressor like 2 6
MIRT504381 HIST1H1C histone cluster 1 H1 family member c 2 4
MIRT506970 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 6
MIRT507028 HIST1H3B histone cluster 1 H3 family member b 2 6
MIRT511561 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT511650 HIST1H3D histone cluster 1 H3 family member d 2 6
MIRT511696 HIST1H2BL histone cluster 1 H2B family member l 2 4
MIRT511737 HIST1H2BB histone cluster 1 H2B family member b 2 6
MIRT511746 HIST1H2BA histone cluster 1 H2B family member a 2 8
MIRT515260 CSNK1E casein kinase 1 epsilon 2 2
MIRT516220 RAB3B RAB3B, member RAS oncogene family 2 4
MIRT523281 HIST1H1E histone cluster 1 H1 family member e 2 2
MIRT524121 DMXL1 Dmx like 1 2 2
MIRT530744 GPR82 G protein-coupled receptor 82 2 2
MIRT532214 CCDC117 coiled-coil domain containing 117 2 2
MIRT546182 TPRG1L tumor protein p63 regulated 1 like 2 2
MIRT558638 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT559562 ARF1 ADP ribosylation factor 1 2 4
MIRT560680 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT570746 AAK1 AP2 associated kinase 1 2 2
MIRT609518 RAB3IP RAB3A interacting protein 2 2
MIRT612583 SYNGAP1 synaptic Ras GTPase activating protein 1 2 4
MIRT615733 RIOK3 RIO kinase 3 2 2
MIRT616068 SIX1 SIX homeobox 1 2 2
MIRT617903 SGCD sarcoglycan delta 2 2
MIRT620851 SERPING1 serpin family G member 1 2 2
MIRT625107 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625120 NUP93 nucleoporin 93 2 2
MIRT625893 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626569 MED7 mediator complex subunit 7 2 2
MIRT626694 ZFP14 ZFP14 zinc finger protein 2 4
MIRT626808 PRR11 proline rich 11 2 2
MIRT628131 HM13 histocompatibility minor 13 2 2
MIRT636596 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT649866 SLFN12L schlafen family member 12 like 2 2
MIRT652133 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652663 TIMELESS timeless circadian clock 2 2
MIRT658335 FAM83D family with sequence similarity 83 member D 2 2
MIRT660615 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT666304 SLC22A3 solute carrier family 22 member 3 2 2
MIRT668528 ERGIC2 ERGIC and golgi 2 2 2
MIRT692510 PARD3 par-3 family cell polarity regulator 2 2
MIRT694784 DHFRL1 dihydrofolate reductase 2 2 2
MIRT700510 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT701438 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT710155 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT711436 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT716979 GPR155 G protein-coupled receptor 155 2 2
MIRT720155 POU2F2 POU class 2 homeobox 2 2 2
MIRT722512 DSTYK dual serine/threonine and tyrosine protein kinase 2 2

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