pre-miRNA Information
pre-miRNA hsa-mir-6509   
Genomic Coordinates chr7: 135206994 - 135207078
Description Homo sapiens miR-6509 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6509-3p
Sequence 52| UUCCACUGCCACUACCUAAUUU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778601614 1 dbSNP
rs754554776 3 dbSNP
rs767798995 3 dbSNP
rs145322812 4 dbSNP
rs773941257 5 dbSNP
rs768273593 9 dbSNP
rs984565062 12 dbSNP
rs748872915 13 dbSNP
rs774861125 14 dbSNP
rs13241975 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ERCC1   
Synonyms COFS4, RAD10, UV20
Description ERCC excision repair 1, endonuclease non-catalytic subunit
Transcript NM_001166049   
Other Transcripts NM_001983 , NM_202001   
Expression
Putative miRNA Targets on ERCC1
3'UTR of ERCC1
(miRNA target sites are highlighted)
>ERCC1|NM_001166049|3'UTR
   1 TGACCCCAGCTGCCAAGGAAACCCCCAGTGTAATAATAAATCGTCCTCCCAGGCCAGGCTCCTGCTGGCTGCGCTGGTGC
  81 AGTCTCTGGGGAGGGATTCTGGGGGTGTCACCTTCTGGTGGCCCAGGTGGGCACCTTCAGCTTTCTTTAGTTCCTCAGTT
 161 TCCCGGGGGCAGACTACACAGGCTGCTGCTGCTGCTGCTTCCGCTTCTTGTCCCGGCCTGTGGGAGCCTCCTCCCCAGAC
 241 TCTGAATTCAGTGGCGGCCCTGGCATCTCCTCTTGGGGCACTGTCTCTGGCATCCGGCTTTCCTGACTCTGCTTCTTCCT
 321 CTTCTTGGTGGATCCCGGAGTTGCCCTGGCTTCAGGCTGTCCCTCCCCTGGCAGTTCAGGCTCTAGTGGCTGAATTGGCT
 401 CAGTCACTGTGTGACCTCTCTCTTTCTTCTTCTTCTTCTTCTTGGTGGATGTGGGAGCTGCCTGAGGCTCAAGGTCATCC
 481 GGCAGCTCAGGCCCCACCACCTCTGTCTCTGGCTCCACTGTGGCATCTTGCTGTTTTTCTTTCTTCGTCTTCTTTTTGGG
 561 AGCTGCCAGAGCTGCCTGGGCCTGAGGCTTCGCTCCTTCTGGCTGTTGAGGCGCCATGGTCCCCCCTGGGGACTCCAGAG
 641 GCTTCATCTCCGGCTCCACTGGCTCCATCGCCTCCGTCCCTGGCTCCATCATTGCCATCTGTCCCTTTTCTTTTTTCCTC
 721 TTCTTCGTAGGGGGCAGAGGGATGGCTTCCTCCAGTGGCTCCACCTTCACCTGTGGCTGAGACTCAACTGTCACCCCCTC
 801 CTCTGGCTCCATCCCTTCCGTCCCCTTTTGCCTCTTTCTCTTTTTGGTCGGGGACAGGACTGTGTCTTCTAGAGGCTCAG
 881 TGTTAATCTGTTCCTGCTTCACTGTCTTGTCTTCTGGCTCGAAGGTTTCTTTCCCTTTGGGCTTCTTCCTCTTCTTGGTG
 961 GTGGACGGGAACAGCACTCCCAGAGGCTCCAGTGTCTCCACTGTGGGCTCTGTCCCCACAGGCCCTGCTGCCTCTGGTTC
1041 TTTCAGCTGCTGATTTTTTTTCTTCTTCTTCTTCCGCACATCCATTTCTGGCGACCCCAAAGCCATGTCCACCTCCAGGG
1121 CCCCGTGCCCATTCACTGCCTCCTGAGTGACTGGGGCCTCTGTCACCTGCATCTCCTTTTTCTTCTTCCCTGAGGTGAGC
1201 AGGTTGGGGGCCAAGGCTGACCTAGGCCCTGTGACTGGTGGGTTGCCCCCAAAGGCACAGAACCGAGGCCTCAGGCCAGG
1281 AGGGATCTGTGGTGGGGGACTTGCTGGGATGGGCTGCAGAGGGCTCCCTGACAGGGATTGCTGGGGACCCTCAAGGATCC
1361 TTAGGGTGCCCTGGGGGGCTGAGGCACAGGTGAGTCCACCTCCTGCCTCCGTTGAGGGGGCCAGCAGGGTCGCTTCTCCA
1441 GCTTGGGGACAGCTGCTGAGGACTCGATAGCGGTGCCGCTTGCCTGCCAATTTGCCCTTGACGATCTGGGAGCCAGAGAG
1521 AGGCACATGCCGCCCATTGAAGCTACAGAGAGAAACAGGGAGGGCAGAGGCTTAAGTGGAACAGGAGAGGGAAGGTTTTT
1601 TGATTTTTTTTTTGTTTTTTTTTGAGAGAGTCTTGCTCTGTTGCCTAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACT
1681 GCAATGTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCAAGTAGCTGGGATTACAGGCACCTGCCACCAC
1761 GCCCAGCCAATTTTTGTATTTTTAGTAGAGACAATTTCACTATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTG
1841 ATCTGCTCGCCTCGGCCTCCCAAAGGATGGGATTACAGGCACCAGCCACTGCGCCTGGCTGGCCTCTGGTTTTTAATAAA
1921 ACATGACTAGAGTGACTCCATCTTAAAGTGAGTAGCTAGGCACTTACAAGGTTCATGCTTATGGCCTGAAAATAACCACA
2001 TCCCAGGCTGACCACCAATTATAATTACAGAATATTTATGGCCATACAGAACATGTTCCACCAAGCCTGCAGAATGTCCA
2081 AATGTCCTAAGAATGCAGCCCCCATTACTTAAATATAACATAAATGAGCAAGCTTAGGTTGCAGGATTAATGGTCGTGGA
2161 TAACACCAATAGCCCCTACCTTTAGTGAGCTTATCTGCACACTCCAAGTTTAACTATAGTTCCTTATAGTTTCTTATAAG
2241 TAGAAATACTAACAAAGGGCTGTGGGTTTCTCCCCCTGCTTTCTGAGGACACTCTACTCTGTAAAGGAGTAGTTTCCAAT
2321 AAACTTGTTTCTTTCACTGTGCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuuaAUCC-AUCAC-CGUCACCuu 5'
              |||| |:| | |||||||  
Target 5' tgccTAGGCTGGAGTGCAGTGGca 3'
1642 - 1665 142.00 -16.40
2
miRNA  3' uuuaaUCCAUCACC-------GUCACCuu 5'
               ||| | |||       ||||||  
Target 5' ggcagAGGGA-TGGCTTCCTCCAGTGGct 3'
733 - 760 124.00 -14.30
3
miRNA  3' uuuaauccaucACCGUCACCUu 5'
                     |||::||||| 
Target 5' cttcctcttctTGGTGGTGGAc 3'
945 - 966 123.00 -11.73
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1178721 85 ClinVar
1203639 183 ClinVar
225987 197 ClinVar
235480 863 ClinVar
COSN30150949 26 COSMIC
COSN18742260 43 COSMIC
COSN30162798 67 COSMIC
COSN30144399 71 COSMIC
COSN31538309 82 COSMIC
COSN8973610 121 COSMIC
COSN30170278 156 COSMIC
COSN30170392 158 COSMIC
COSN30100785 164 COSMIC
COSN30136130 165 COSMIC
COSM3938175 179 COSMIC
COSM8492593 182 COSMIC
COSM4985714 197 COSMIC
COSM998199 215 COSMIC
COSM8969836 223 COSMIC
COSM4820639 230 COSMIC
COSM998198 255 COSMIC
COSM8080743 256 COSMIC
COSM6992028 267 COSMIC
COSM7321673 292 COSMIC
COSM4079359 296 COSMIC
COSM9031705 297 COSMIC
COSM3960203 321 COSMIC
COSM7231769 321 COSMIC
COSM3104156 335 COSMIC
COSM6623757 337 COSMIC
COSM4079358 346 COSMIC
COSM8408508 349 COSMIC
COSM7935943 363 COSMIC
COSM8103510 367 COSMIC
COSM4581216 385 COSMIC
COSM6623759 386 COSMIC
COSM3389137 407 COSMIC
COSM8198822 417 COSMIC
COSM5390105 419 COSMIC
COSM1304776 420 COSMIC
COSM5390104 420 COSMIC
COSM3960202 422 COSMIC
COSM1481223 424 COSMIC
COSM5833778 426 COSMIC
COSM8242240 426 COSMIC
COSM9609733 427 COSMIC
COSM6151480 429 COSMIC
COSM7085737 429 COSMIC
COSM7648507 432 COSMIC
COSM5856161 458 COSMIC
COSM6623754 480 COSMIC
COSM3104153 481 COSMIC
COSM1200296 500 COSMIC
COSM8614228 525 COSMIC
COSM4985305 527 COSMIC
COSM4460717 530 COSMIC
COSM4982864 539 COSMIC
COSM1284021 547 COSMIC
COSM5018501 572 COSMIC
COSM1163196 590 COSMIC
COSM9528743 591 COSMIC
COSM439786 599 COSMIC
COSM998197 612 COSMIC
COSM8317126 620 COSMIC
COSM8466636 636 COSMIC
COSM7219650 651 COSMIC
COSM6623756 652 COSMIC
COSM4818925 663 COSMIC
COSM8551755 675 COSMIC
COSM1394606 676 COSMIC
COSM8733962 678 COSMIC
COSM5181024 691 COSMIC
COSM8679830 699 COSMIC
COSM9901219 704 COSMIC
COSM5741641 718 COSMIC
COSM7087355 723 COSMIC
COSM3773068 727 COSMIC
COSM8189317 729 COSMIC
COSM5856160 731 COSMIC
COSM9533693 737 COSMIC
COSM9696450 740 COSMIC
COSM8490802 745 COSMIC
COSM998196 751 COSMIC
COSM82057 753 COSMIC
COSM4901363 755 COSMIC
COSM8175328 785 COSMIC
COSM8190105 790 COSMIC
COSM4670495 795 COSMIC
COSM4079357 796 COSMIC
COSM1681132 811 COSMIC
COSM5856159 826 COSMIC
COSM9689097 838 COSMIC
COSM4518908 846 COSMIC
COSM6880519 855 COSMIC
COSM8452130 876 COSMIC
COSM7710589 880 COSMIC
COSM5446531 897 COSMIC
COSM8175376 914 COSMIC
COSM3104144 921 COSMIC
COSM9661588 924 COSMIC
COSM7686440 930 COSMIC
COSM3756954 931 COSMIC
COSM6987857 948 COSMIC
COSM8675566 954 COSMIC
COSM1471012 966 COSMIC
COSM7710571 983 COSMIC
COSM3743010 1012 COSMIC
COSM5087008 1018 COSMIC
COSM7626139 1018 COSMIC
COSM9665786 1021 COSMIC
COSM4436402 1034 COSMIC
COSM9142454 1040 COSMIC
COSM33397 1053 COSMIC
COSM3104142 1054 COSMIC
COSM8952070 1059 COSMIC
COSM1721172 1060 COSMIC
COSM7484795 1076 COSMIC
COSM293185 1093 COSMIC
COSM243566 1125 COSMIC
COSM7292176 1129 COSMIC
COSM4552044 1160 COSMIC
COSM5066775 1163 COSMIC
COSM9154177 1171 COSMIC
COSM6623761 1177 COSMIC
COSM1750984 1179 COSMIC
COSM7107314 1219 COSMIC
COSM5150280 1220 COSMIC
COSM3672946 1229 COSMIC
COSM8507302 1263 COSMIC
COSM6623760 1264 COSMIC
COSM5599271 1265 COSMIC
COSM8907443 1282 COSMIC
COSM6305459 1305 COSMIC
COSM6623755 1312 COSMIC
COSM3104134 1316 COSMIC
COSM8811176 1317 COSMIC
COSM5364737 1338 COSMIC
COSM4925938 1347 COSMIC
COSM4670494 1371 COSMIC
COSM3104133 1395 COSMIC
COSM4541734 1402 COSMIC
COSM9789860 1403 COSMIC
COSM4079356 1410 COSMIC
COSM9148341 1421 COSMIC
COSM8599150 1432 COSMIC
COSM6465842 1441 COSMIC
COSM6465841 1442 COSMIC
COSM6289840 1453 COSMIC
COSM8175290 1463 COSMIC
COSM5856158 1466 COSMIC
COSM7502388 1472 COSMIC
COSM8934225 1478 COSMIC
COSM6292751 1495 COSMIC
COSM6623758 1495 COSMIC
COSM5111589 1502 COSMIC
COSM7678227 1516 COSMIC
COSM7519568 1531 COSMIC
COSM7519493 1532 COSMIC
COSM8595291 1532 COSMIC
COSM7530869 1533 COSMIC
COSM6151481 1535 COSMIC
COSN17183377 1575 COSMIC
COSN19729429 1613 COSMIC
COSN20046944 1614 COSMIC
COSN32062061 1614 COSMIC
COSN30588580 1615 COSMIC
COSN27126516 2013 COSMIC
COSN29476505 2171 COSMIC
COSN24598446 2222 COSMIC
COSN24957502 2275 COSMIC
COSN16195958 2301 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs570218353 5 dbSNP
rs766667054 7 dbSNP
rs763312427 8 dbSNP
rs780421259 8 dbSNP
rs2229918 9 dbSNP
rs1224780946 12 dbSNP
rs1487404602 16 dbSNP
rs770380953 18 dbSNP
rs1301642339 21 dbSNP
rs1440085788 22 dbSNP
rs1392149950 23 dbSNP
rs1404270562 27 dbSNP
rs1245893313 32 dbSNP
rs536397762 32 dbSNP
rs1347315805 34 dbSNP
rs756488455 34 dbSNP
rs368093760 37 dbSNP
rs956890282 40 dbSNP
rs377744579 42 dbSNP
rs189503912 43 dbSNP
rs779688347 45 dbSNP
rs1193326204 46 dbSNP
rs1453156022 48 dbSNP
rs758155521 49 dbSNP
rs999979824 51 dbSNP
rs1271770191 52 dbSNP
rs1481045042 54 dbSNP
rs899946498 58 dbSNP
rs1018111806 64 dbSNP
rs904182440 71 dbSNP
rs743571 72 dbSNP
rs1041342185 73 dbSNP
rs1159304575 81 dbSNP
rs55776297 85 dbSNP
rs945700906 103 dbSNP
rs547897348 104 dbSNP
rs917141254 105 dbSNP
rs1367422239 107 dbSNP
rs1046986625 118 dbSNP
rs1179792411 124 dbSNP
rs527715200 125 dbSNP
rs1306059524 130 dbSNP
rs778552962 132 dbSNP
rs1193726916 135 dbSNP
rs1346599935 138 dbSNP
rs757304583 141 dbSNP
rs1233230614 144 dbSNP
rs750900979 149 dbSNP
rs753826588 152 dbSNP
rs1355076475 154 dbSNP
rs1447421671 156 dbSNP
rs767764676 158 dbSNP
rs1326872098 161 dbSNP
rs1358283996 163 dbSNP
rs1056830405 164 dbSNP
rs755051088 165 dbSNP
rs751736790 167 dbSNP
rs757317847 170 dbSNP
rs768081656 170 dbSNP
rs766585705 172 dbSNP
rs941494600 175 dbSNP
rs371905515 176 dbSNP
rs750837868 179 dbSNP
rs118178942 183 dbSNP
rs1231816534 184 dbSNP
rs1406995672 184 dbSNP
rs1178992969 188 dbSNP
rs762364836 194 dbSNP
rs3212986 197 dbSNP
rs768155232 199 dbSNP
rs1165589448 200 dbSNP
rs763194578 200 dbSNP
rs775597312 200 dbSNP
rs532461242 202 dbSNP
rs759287808 202 dbSNP
rs771809793 203 dbSNP
rs745481928 204 dbSNP
rs778839547 206 dbSNP
rs770839696 208 dbSNP
rs1243282808 210 dbSNP
rs749251479 214 dbSNP
rs777786624 215 dbSNP
rs367572828 216 dbSNP
rs1227346996 217 dbSNP
rs563391291 224 dbSNP
rs376126455 227 dbSNP
rs776702737 227 dbSNP
rs372336084 230 dbSNP
rs543650827 233 dbSNP
rs1424285320 235 dbSNP
rs765598246 243 dbSNP
rs1029847463 244 dbSNP
rs771047736 244 dbSNP
rs747942403 251 dbSNP
rs199556175 255 dbSNP
rs35448603 256 dbSNP
rs1165483494 258 dbSNP
rs1473516400 261 dbSNP
rs1260533705 263 dbSNP
rs761067606 267 dbSNP
rs1030236165 270 dbSNP
rs775107965 272 dbSNP
rs1168424481 273 dbSNP
rs964169447 273 dbSNP
rs1371326961 278 dbSNP
rs1018481502 279 dbSNP
rs771482315 280 dbSNP
rs1216191384 289 dbSNP
rs561071631 292 dbSNP
rs1282128839 294 dbSNP
rs774090319 295 dbSNP
rs1357230199 296 dbSNP
rs770853929 298 dbSNP
rs1192343391 301 dbSNP
rs1057199784 303 dbSNP
rs1338232476 308 dbSNP
rs746953232 309 dbSNP
rs749054278 309 dbSNP
rs1231687687 312 dbSNP
rs1342563495 314 dbSNP
rs777876532 319 dbSNP
rs1430522545 322 dbSNP
rs772777599 327 dbSNP
rs201700017 331 dbSNP
rs201278532 334 dbSNP
rs143359960 336 dbSNP
rs780237434 337 dbSNP
rs758351561 343 dbSNP
rs372260050 344 dbSNP
rs1425269261 347 dbSNP
rs368905711 349 dbSNP
rs558144446 359 dbSNP
rs1474986125 361 dbSNP
rs199701462 365 dbSNP
rs947154479 366 dbSNP
rs1321776782 370 dbSNP
rs764413282 380 dbSNP
rs1272658274 384 dbSNP
rs1211839877 385 dbSNP
rs1225679970 386 dbSNP
rs756713553 388 dbSNP
rs771508875 388 dbSNP
rs779058845 389 dbSNP
rs374805034 392 dbSNP
rs758904399 393 dbSNP
rs867495210 398 dbSNP
rs1430274515 402 dbSNP
rs774178467 422 dbSNP
rs1194238582 424 dbSNP
rs747817890 424 dbSNP
rs1428358087 425 dbSNP
rs1360386294 426 dbSNP
rs1400809717 426 dbSNP
rs1178302075 429 dbSNP
rs1364245324 429 dbSNP
rs778473284 429 dbSNP
rs762674257 432 dbSNP
rs1276916316 433 dbSNP
rs796814956 436 dbSNP
rs773205526 442 dbSNP
rs35729377 444 dbSNP
rs374686338 444 dbSNP
rs756498450 444 dbSNP
rs769943309 444 dbSNP
rs781551483 444 dbSNP
rs1324662945 445 dbSNP
rs35452819 450 dbSNP
rs1301163543 451 dbSNP
rs769460953 452 dbSNP
rs372751771 456 dbSNP
rs776365367 462 dbSNP
rs772220665 463 dbSNP
rs1417129616 466 dbSNP
rs745896122 472 dbSNP
rs778938952 473 dbSNP
rs1262593631 474 dbSNP
rs757513980 480 dbSNP
rs555070201 481 dbSNP
rs1355086331 491 dbSNP
rs201676132 493 dbSNP
rs200817062 497 dbSNP
rs199559014 499 dbSNP
rs1459197193 500 dbSNP
rs1268162117 501 dbSNP
rs778172332 503 dbSNP
rs375637409 504 dbSNP
rs756380267 505 dbSNP
rs200242647 507 dbSNP
rs201295345 508 dbSNP
rs1281209870 509 dbSNP
rs533843222 512 dbSNP
rs977410259 513 dbSNP
rs1421171660 515 dbSNP
rs139349157 520 dbSNP
rs754539828 524 dbSNP
rs373496739 525 dbSNP
rs2336219 527 dbSNP
rs1441061830 533 dbSNP
rs1197890940 535 dbSNP
rs866797290 536 dbSNP
rs762751719 539 dbSNP
rs1179547099 540 dbSNP
rs772941647 546 dbSNP
rs763442500 547 dbSNP
rs761470524 550 dbSNP
rs1171749886 552 dbSNP
rs757694703 555 dbSNP
rs1251341774 556 dbSNP
rs1238517049 562 dbSNP
rs1364308247 564 dbSNP
rs776649533 565 dbSNP
rs1407263866 575 dbSNP
rs768522342 576 dbSNP
rs1275844150 583 dbSNP
rs746915457 583 dbSNP
rs1239484346 587 dbSNP
rs1206088531 588 dbSNP
rs762562 590 dbSNP
rs770987363 591 dbSNP
rs112438131 592 dbSNP
rs1219550328 594 dbSNP
rs756532982 595 dbSNP
rs1318001821 596 dbSNP
rs752091935 601 dbSNP
rs140755881 609 dbSNP
rs755479894 612 dbSNP
rs752096692 613 dbSNP
rs150941977 614 dbSNP
rs757913813 617 dbSNP
rs62109561 618 dbSNP
rs1421475430 619 dbSNP
rs1364262688 621 dbSNP
rs909941106 622 dbSNP
rs750131630 625 dbSNP
rs1416051886 626 dbSNP
rs1035579942 628 dbSNP
rs764743323 628 dbSNP
rs201152485 630 dbSNP
rs764185055 638 dbSNP
rs571732598 639 dbSNP
rs1219181363 640 dbSNP
rs1409785943 647 dbSNP
rs143986694 648 dbSNP
rs1162420461 650 dbSNP
rs140434179 651 dbSNP
rs775352894 652 dbSNP
rs1314676040 654 dbSNP
rs371398284 656 dbSNP
rs762979974 657 dbSNP
rs773505594 665 dbSNP
rs1291235096 667 dbSNP
rs769960893 669 dbSNP
rs748372404 670 dbSNP
rs758456293 670 dbSNP
rs1300240168 672 dbSNP
rs781466069 674 dbSNP
rs199895540 675 dbSNP
rs146750944 676 dbSNP
rs780667352 682 dbSNP
rs866543758 683 dbSNP
rs757999734 684 dbSNP
rs749947084 688 dbSNP
rs1361608949 690 dbSNP
rs778451525 691 dbSNP
rs756925223 696 dbSNP
rs1196073231 699 dbSNP
rs1429548281 700 dbSNP
rs1261450153 703 dbSNP
rs1203910905 705 dbSNP
rs1489714884 710 dbSNP
rs1202246031 711 dbSNP
rs753518136 715 dbSNP
rs371868030 720 dbSNP
rs760400069 721 dbSNP
rs752666450 723 dbSNP
rs767394181 726 dbSNP
rs752931566 727 dbSNP
rs964222383 727 dbSNP
rs1018947921 728 dbSNP
rs371563856 731 dbSNP
rs773206067 732 dbSNP
rs769915095 734 dbSNP
rs1380467170 736 dbSNP
rs1373024429 737 dbSNP
rs761952784 739 dbSNP
rs776844788 740 dbSNP
rs769173238 741 dbSNP
rs1419502731 745 dbSNP
rs1169924007 746 dbSNP
rs747329205 747 dbSNP
rs143443617 752 dbSNP
rs200618543 759 dbSNP
rs746379344 762 dbSNP
rs778346767 763 dbSNP
rs1193527878 765 dbSNP
rs756736472 766 dbSNP
rs1186026178 768 dbSNP
rs766725989 769 dbSNP
rs748900769 773 dbSNP
rs777368519 774 dbSNP
rs755925154 776 dbSNP
rs1339584823 779 dbSNP
rs3212988 789 dbSNP
rs767269782 791 dbSNP
rs895475604 794 dbSNP
rs1304153580 795 dbSNP
rs1440061512 796 dbSNP
rs754939987 797 dbSNP
rs751453778 800 dbSNP
rs148669652 804 dbSNP
rs761911449 806 dbSNP
rs776736875 808 dbSNP
rs764460395 814 dbSNP
rs199589536 819 dbSNP
rs143986145 820 dbSNP
rs1212695862 821 dbSNP
rs1173626984 822 dbSNP
rs772550576 823 dbSNP
rs1250606238 824 dbSNP
rs746376502 832 dbSNP
rs774856339 834 dbSNP
rs1318265868 838 dbSNP
rs765443575 840 dbSNP
rs759389149 844 dbSNP
rs767701108 847 dbSNP
rs372074228 848 dbSNP
rs139303076 849 dbSNP
rs748783248 850 dbSNP
rs777247662 852 dbSNP
rs1047124023 858 dbSNP
rs3212989 863 dbSNP
rs747797856 873 dbSNP
rs1474724281 874 dbSNP
rs1335223653 875 dbSNP
rs370766397 876 dbSNP
rs754733579 880 dbSNP
rs751480513 890 dbSNP
rs766287340 895 dbSNP
rs377364364 902 dbSNP
rs758241432 906 dbSNP
rs373394597 909 dbSNP
rs200817376 911 dbSNP
rs1174710038 917 dbSNP
rs754011540 920 dbSNP
rs142978273 921 dbSNP
rs1317761990 924 dbSNP
rs1324712237 925 dbSNP
rs1001385997 928 dbSNP
rs735482 931 dbSNP
rs1362706930 933 dbSNP
rs1341053378 934 dbSNP
rs775794365 935 dbSNP
rs768000297 937 dbSNP
rs1257994417 944 dbSNP
rs1209840998 945 dbSNP
rs1484549603 946 dbSNP
rs759906101 949 dbSNP
rs774742587 951 dbSNP
rs968900148 955 dbSNP
rs771521721 964 dbSNP
rs749731534 966 dbSNP
rs764593189 967 dbSNP
rs1356278859 968 dbSNP
rs769283749 969 dbSNP
rs959738282 971 dbSNP
rs374741789 972 dbSNP
rs1282954388 979 dbSNP
rs1035447642 985 dbSNP
rs780779664 991 dbSNP
rs370350694 998 dbSNP
rs1319635946 999 dbSNP
rs1480382696 1006 dbSNP
rs768354999 1008 dbSNP
rs1183029489 1011 dbSNP
rs1383639797 1014 dbSNP
rs796868856 1016 dbSNP
rs1197767271 1018 dbSNP
rs1476002109 1019 dbSNP
rs147330482 1022 dbSNP
rs1265683216 1023 dbSNP
rs901323864 1024 dbSNP
rs970147671 1025 dbSNP
rs1016165025 1027 dbSNP
rs1471721124 1030 dbSNP
rs113047593 1034 dbSNP
rs1361148840 1037 dbSNP
rs1288746065 1039 dbSNP
rs575933606 1040 dbSNP
rs1446293774 1044 dbSNP
rs1266336975 1047 dbSNP
rs776026821 1049 dbSNP
rs778011053 1051 dbSNP
rs201059236 1052 dbSNP
rs756199096 1053 dbSNP
rs753000019 1054 dbSNP
rs911518224 1057 dbSNP
rs1048681973 1059 dbSNP
rs1214476998 1062 dbSNP
rs1286069201 1062 dbSNP
rs753626854 1062 dbSNP
rs767730573 1068 dbSNP
rs1430673074 1072 dbSNP
rs759655642 1075 dbSNP
rs760646316 1075 dbSNP
rs766278594 1075 dbSNP
rs751999730 1076 dbSNP
rs1328480603 1079 dbSNP
rs766652613 1080 dbSNP
rs1394559512 1082 dbSNP
rs763511902 1088 dbSNP
rs77680493 1092 dbSNP
rs1421404462 1093 dbSNP
rs1423944065 1097 dbSNP
rs773336535 1101 dbSNP
rs1475058793 1103 dbSNP
rs769322750 1104 dbSNP
rs761260808 1106 dbSNP
rs776093179 1110 dbSNP
rs1387192837 1111 dbSNP
rs1041126813 1112 dbSNP
rs770436134 1114 dbSNP
rs1469020258 1115 dbSNP
rs574241250 1117 dbSNP
rs746637760 1121 dbSNP
rs779956242 1122 dbSNP
rs771705068 1124 dbSNP
rs148142467 1125 dbSNP
rs778956589 1128 dbSNP
rs1306345910 1131 dbSNP
rs756285272 1133 dbSNP
rs1371096615 1136 dbSNP
rs1324567977 1138 dbSNP
rs752873305 1142 dbSNP
rs1365751831 1144 dbSNP
rs781105455 1148 dbSNP
rs1267826729 1152 dbSNP
rs1329076946 1155 dbSNP
rs1409203245 1158 dbSNP
rs755298755 1160 dbSNP
rs1175448969 1166 dbSNP
rs746472221 1171 dbSNP
rs1195639734 1173 dbSNP
rs1359322290 1182 dbSNP
rs143757857 1185 dbSNP
rs1189511449 1194 dbSNP
rs763261365 1197 dbSNP
rs368322936 1198 dbSNP
rs534345630 1199 dbSNP
rs1031778537 1204 dbSNP
rs1282831188 1205 dbSNP
rs989012744 1207 dbSNP
rs762272937 1208 dbSNP
rs1347729443 1209 dbSNP
rs1300024741 1214 dbSNP
rs1166983840 1217 dbSNP
rs1217006246 1221 dbSNP
rs1370173436 1229 dbSNP
rs997264148 1233 dbSNP
rs1374841687 1238 dbSNP
rs776271362 1241 dbSNP
rs149071715 1245 dbSNP
rs1368490552 1249 dbSNP
rs760386647 1253 dbSNP
rs774936715 1258 dbSNP
rs1374818554 1261 dbSNP
rs35218885 1261 dbSNP
rs771934564 1264 dbSNP
rs745611241 1265 dbSNP
rs771033441 1268 dbSNP
rs928391614 1271 dbSNP
rs749237136 1272 dbSNP
rs1449912668 1273 dbSNP
rs1314225801 1280 dbSNP
rs889967425 1281 dbSNP
rs1471699340 1282 dbSNP
rs781393898 1286 dbSNP
rs1211990472 1287 dbSNP
rs1485530244 1288 dbSNP
rs578179310 1289 dbSNP
rs1218538552 1292 dbSNP
rs747262811 1294 dbSNP
rs867839585 1295 dbSNP
rs137924394 1298 dbSNP
rs538270415 1299 dbSNP
rs750823192 1302 dbSNP
rs1294714955 1304 dbSNP
rs765577776 1308 dbSNP
rs1378154645 1317 dbSNP
rs1301087694 1326 dbSNP
rs756696195 1327 dbSNP
rs1320364003 1328 dbSNP
rs145278578 1333 dbSNP
rs754240207 1337 dbSNP
rs763663970 1338 dbSNP
rs938769614 1340 dbSNP
rs1016307845 1342 dbSNP
rs1158414554 1346 dbSNP
rs1455870457 1348 dbSNP
rs1420341913 1349 dbSNP
rs1188889840 1351 dbSNP
rs1475116451 1352 dbSNP
rs775232610 1356 dbSNP
rs767329376 1359 dbSNP
rs1486453089 1365 dbSNP
rs201322262 1368 dbSNP
rs370128975 1369 dbSNP
rs1326438436 1374 dbSNP
rs559543077 1376 dbSNP
rs771583146 1379 dbSNP
rs749264193 1381 dbSNP
rs771845106 1383 dbSNP
rs772958591 1387 dbSNP
rs950729595 1393 dbSNP
rs768800295 1394 dbSNP
rs367886330 1395 dbSNP
rs980158832 1396 dbSNP
rs375294528 1397 dbSNP
rs1319768407 1398 dbSNP
rs1345788884 1399 dbSNP
rs758683252 1400 dbSNP
rs1404969416 1402 dbSNP
rs140241488 1410 dbSNP
rs746076752 1411 dbSNP
rs779262400 1416 dbSNP
rs761300455 1418 dbSNP
rs914419252 1420 dbSNP
rs754399021 1425 dbSNP
rs1261702970 1428 dbSNP
rs200375319 1431 dbSNP
rs752189100 1432 dbSNP
rs767131357 1433 dbSNP
rs1213942160 1446 dbSNP
rs774042056 1450 dbSNP
rs759323601 1451 dbSNP
rs1318404185 1455 dbSNP
rs889796834 1455 dbSNP
rs774092679 1460 dbSNP
rs146656316 1461 dbSNP
rs762618583 1465 dbSNP
rs769657381 1466 dbSNP
rs1031327928 1468 dbSNP
rs1400626711 1470 dbSNP
rs761801066 1471 dbSNP
rs143485921 1472 dbSNP
rs140862830 1477 dbSNP
rs1300095517 1478 dbSNP
rs1462870277 1480 dbSNP
rs1470528389 1482 dbSNP
rs779065447 1484 dbSNP
rs1167269845 1489 dbSNP
rs1261015567 1490 dbSNP
rs1455919962 1493 dbSNP
rs150994935 1497 dbSNP
rs749664375 1498 dbSNP
rs768138183 1498 dbSNP
rs778171085 1502 dbSNP
rs113025996 1503 dbSNP
rs1450504139 1511 dbSNP
rs938848514 1513 dbSNP
rs1194171340 1516 dbSNP
rs1197165668 1522 dbSNP
rs1480872178 1524 dbSNP
rs1017334637 1526 dbSNP
rs780867630 1527 dbSNP
rs754473696 1529 dbSNP
rs368286738 1531 dbSNP
rs549329477 1532 dbSNP
rs1232692003 1536 dbSNP
rs376830194 1537 dbSNP
rs1309510894 1539 dbSNP
rs750247397 1542 dbSNP
rs979881919 1543 dbSNP
rs1370352178 1557 dbSNP
rs1306507106 1559 dbSNP
rs765064943 1560 dbSNP
rs761668695 1562 dbSNP
rs1452497887 1565 dbSNP
rs948432392 1567 dbSNP
rs776484508 1568 dbSNP
rs1295783786 1569 dbSNP
rs772168585 1570 dbSNP
rs748945276 1574 dbSNP
rs749206651 1576 dbSNP
rs1363047294 1577 dbSNP
rs536169665 1580 dbSNP
rs771100281 1582 dbSNP
rs749522470 1583 dbSNP
rs567181439 1584 dbSNP
rs770141832 1593 dbSNP
rs1221160656 1596 dbSNP
rs547191855 1597 dbSNP
rs187794054 1602 dbSNP
rs2013521 1603 dbSNP
rs202063629 1604 dbSNP
rs373645122 1604 dbSNP
rs1473758415 1608 dbSNP
rs77052728 1611 dbSNP
rs747498774 1613 dbSNP
rs8103749 1613 dbSNP
rs11314106 1614 dbSNP
rs1418118176 1614 dbSNP
rs1491573977 1614 dbSNP
rs5828233 1614 dbSNP
rs200025030 1615 dbSNP
rs75205129 1622 dbSNP
rs1361970356 1623 dbSNP
rs35708119 1624 dbSNP
rs368358045 1624 dbSNP
rs547087785 1624 dbSNP
rs1180890194 1627 dbSNP
rs1294467446 1630 dbSNP
rs1372925143 1631 dbSNP
rs1419444646 1631 dbSNP
rs1254249815 1639 dbSNP
rs907220893 1643 dbSNP
rs531407458 1652 dbSNP
rs1245327367 1659 dbSNP
rs1291015736 1665 dbSNP
rs545753812 1666 dbSNP
rs1017353870 1672 dbSNP
rs542570048 1673 dbSNP
rs1480119399 1676 dbSNP
rs183074620 1680 dbSNP
rs990425265 1684 dbSNP
rs1439845779 1689 dbSNP
rs1182433014 1690 dbSNP
rs1260648584 1691 dbSNP
rs934593217 1692 dbSNP
rs1407548890 1693 dbSNP
rs1165969964 1694 dbSNP
rs1007391807 1695 dbSNP
rs1464278303 1696 dbSNP
rs889903027 1697 dbSNP
rs1021698537 1706 dbSNP
rs560766196 1707 dbSNP
rs1012014599 1712 dbSNP
rs1377905779 1713 dbSNP
rs1452067583 1714 dbSNP
rs891776741 1715 dbSNP
rs540871734 1724 dbSNP
rs1376924104 1727 dbSNP
rs1229910511 1729 dbSNP
rs1290344723 1732 dbSNP
rs1053376869 1738 dbSNP
rs1402679570 1739 dbSNP
rs938879545 1748 dbSNP
rs907370976 1755 dbSNP
rs1306637844 1760 dbSNP
rs1196525220 1761 dbSNP
rs1044995785 1794 dbSNP
rs1406582118 1802 dbSNP
rs1382779564 1807 dbSNP
rs578208320 1810 dbSNP
rs1202531182 1814 dbSNP
rs965674545 1822 dbSNP
rs1474073484 1823 dbSNP
rs910239756 1829 dbSNP
rs948905285 1832 dbSNP
rs1454132789 1835 dbSNP
rs1477077839 1836 dbSNP
rs985858065 1838 dbSNP
rs1401349584 1845 dbSNP
rs908981385 1848 dbSNP
rs984535155 1849 dbSNP
rs996116077 1850 dbSNP
rs961569382 1853 dbSNP
rs767797029 1854 dbSNP
rs1269855508 1865 dbSNP
rs1003138740 1870 dbSNP
rs558309295 1872 dbSNP
rs148038609 1876 dbSNP
rs1044405628 1878 dbSNP
rs1047272823 1881 dbSNP
rs193096276 1888 dbSNP
rs965974902 1892 dbSNP
rs555484529 1893 dbSNP
rs1331698964 1897 dbSNP
rs1261708692 1898 dbSNP
rs1223254808 1908 dbSNP
rs868539528 1909 dbSNP
rs764315369 1917 dbSNP
rs143529478 1918 dbSNP
rs1275065707 1921 dbSNP
rs1437989290 1922 dbSNP
rs763402713 1923 dbSNP
rs1324112110 1925 dbSNP
rs1480239496 1930 dbSNP
rs567269017 1939 dbSNP
rs986398382 1950 dbSNP
rs1170969947 1952 dbSNP
rs1427521876 1959 dbSNP
rs1317585127 1967 dbSNP
rs1415169429 1967 dbSNP
rs553640912 1976 dbSNP
rs934457740 1977 dbSNP
rs1390717564 1983 dbSNP
rs533771641 1997 dbSNP
rs924484490 1998 dbSNP
rs1340838058 2028 dbSNP
rs117128015 2030 dbSNP
rs149272244 2036 dbSNP
rs910205288 2040 dbSNP
rs985826900 2047 dbSNP
rs951770832 2049 dbSNP
rs920297224 2056 dbSNP
rs1219353079 2064 dbSNP
rs891808539 2067 dbSNP
rs1372539163 2072 dbSNP
rs1031636605 2074 dbSNP
rs1193958107 2077 dbSNP
rs138557840 2081 dbSNP
rs568889783 2083 dbSNP
rs1478462225 2086 dbSNP
rs1158103088 2095 dbSNP
rs1378505247 2099 dbSNP
rs1241819609 2113 dbSNP
rs1417805316 2116 dbSNP
rs1203500887 2128 dbSNP
rs1461991103 2129 dbSNP
rs548752904 2132 dbSNP
rs1386050628 2134 dbSNP
rs1321300211 2139 dbSNP
rs111448570 2141 dbSNP
rs188831361 2142 dbSNP
rs1436687544 2143 dbSNP
rs1336915229 2150 dbSNP
rs1307912046 2155 dbSNP
rs971656717 2170 dbSNP
rs1363677830 2176 dbSNP
rs540904237 2177 dbSNP
rs533637524 2179 dbSNP
rs887924730 2180 dbSNP
rs1049295952 2185 dbSNP
rs1356235211 2191 dbSNP
rs929019825 2195 dbSNP
rs1208472303 2204 dbSNP
rs1292421298 2207 dbSNP
rs1452432495 2209 dbSNP
rs1022920429 2215 dbSNP
rs760296724 2216 dbSNP
rs1367354782 2217 dbSNP
rs564538579 2218 dbSNP
rs1380880583 2226 dbSNP
rs919005100 2227 dbSNP
rs544748650 2236 dbSNP
rs376694674 2239 dbSNP
rs1161263893 2243 dbSNP
rs1406486800 2248 dbSNP
rs1046282 2261 dbSNP
rs1408474574 2265 dbSNP
rs910483488 2276 dbSNP
rs1054921615 2281 dbSNP
rs1448414634 2286 dbSNP
rs1451401551 2293 dbSNP
rs1243194945 2294 dbSNP
rs1383926497 2296 dbSNP
rs771863554 2298 dbSNP
rs183371964 2302 dbSNP
rs915044390 2304 dbSNP
rs1040234266 2308 dbSNP
rs1199379365 2309 dbSNP
rs990235116 2319 dbSNP
rs73559395 2324 dbSNP
rs761507705 2335 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaauccaucaccgUCACCUu 5'
                         |||||| 
Target 5' --------------aAGUGGAa 3'
1 - 8
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000300853.3 | 3UTR | AAGUGGAACAGGAGAGGGAAGGUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6509-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055374 PDCD4 programmed cell death 4 2 4
MIRT378341 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT444668 CDKL2 cyclin dependent kinase like 2 2 2
MIRT446953 CD248 CD248 molecule 2 2
MIRT460332 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT464078 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464586 UBN2 ubinuclein 2 2 2
MIRT468482 SESN3 sestrin 3 2 2
MIRT468962 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT475455 HSPA8 heat shock protein family A (Hsp70) member 8 2 2
MIRT482403 ADRB1 adrenoceptor beta 1 2 10
MIRT486992 ZFAND2B zinc finger AN1-type containing 2B 2 2
MIRT489397 TUBB2A tubulin beta 2A class IIa 2 2
MIRT526319 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526560 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526732 ZNF138 zinc finger protein 138 2 8
MIRT531581 STXBP5L syntaxin binding protein 5 like 2 2
MIRT532011 NOX5 NADPH oxidase 5 2 2
MIRT533407 TXLNG taxilin gamma 2 2
MIRT533436 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533866 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT539254 ANKRD50 ankyrin repeat domain 50 2 2
MIRT541451 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT566794 MIER3 MIER family member 3 2 2
MIRT569294 SURF6 surfeit 6 2 2
MIRT571336 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT572802 PPP3CB protein phosphatase 3 catalytic subunit beta 2 2
MIRT572813 MYO1C myosin IC 2 2
MIRT574219 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT607259 GRAMD1B GRAM domain containing 1B 2 4
MIRT609307 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT615459 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT616861 RPLP1 ribosomal protein lateral stalk subunit P1 2 2
MIRT619415 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT619652 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT625325 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT638980 ARFIP2 ADP ribosylation factor interacting protein 2 2 2
MIRT639458 ZNF429 zinc finger protein 429 2 2
MIRT640550 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT641473 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT642720 ATXN3 ataxin 3 2 2
MIRT643048 SMN1 survival of motor neuron 1, telomeric 2 2
MIRT644921 SMN2 survival of motor neuron 2, centromeric 2 2
MIRT645875 ZNF275 zinc finger protein 275 2 2
MIRT649824 LIPG lipase G, endothelial type 2 2
MIRT649851 GYS2 glycogen synthase 2 2 2
MIRT649972 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650675 ZNF259 ZPR1 zinc finger 1 1
MIRT651319 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652876 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT652881 SYVN1 synoviolin 1 2 2
MIRT654144 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT657080 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657181 INO80C INO80 complex subunit C 2 2
MIRT657830 GJD3 gap junction protein delta 3 2 2
MIRT657897 GDF7 growth differentiation factor 7 2 2
MIRT659631 CDKN2AIP CDKN2A interacting protein 2 2
MIRT663115 SPTA1 spectrin alpha, erythrocytic 1 2 2
MIRT664739 METTL16 methyltransferase like 16 2 2
MIRT667551 LRAT lecithin retinol acyltransferase 2 2
MIRT668552 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT682893 XIAP X-linked inhibitor of apoptosis 2 2
MIRT683092 PRRG4 proline rich and Gla domain 4 2 2
MIRT683102 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT697648 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT709158 ZNF419 zinc finger protein 419 2 2
MIRT713220 RCAN2 regulator of calcineurin 2 2 2
MIRT713277 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT715008 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715051 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT715696 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT717250 TMEM246 transmembrane protein 246 2 2
MIRT717322 PGK1 phosphoglycerate kinase 1 2 2
MIRT717587 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT718122 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718418 CALN1 calneuron 1 2 2
MIRT718750 ZNF490 zinc finger protein 490 2 2
MIRT720048 PPP1R3F protein phosphatase 1 regulatory subunit 3F 2 2
MIRT721497 THRB thyroid hormone receptor beta 2 2
MIRT722531 EPRS glutamyl-prolyl-tRNA synthetase 2 2
MIRT723279 KRTAP21-2 keratin associated protein 21-2 2 2
MIRT724813 MSX2 msh homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6509-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6509-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6509-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6509-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6509-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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