pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CHEK1   
Synonyms CHK1
Description checkpoint kinase 1
Transcript NM_001114122   
Other Transcripts NM_001114121 , NM_001274   
Expression
Putative miRNA Targets on CHEK1
3'UTR of CHEK1
(miRNA target sites are highlighted)
>CHEK1|NM_001114122|3'UTR
   1 TCGGACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTATGTTGACATTATTCTTCCTAGAGAAGATTATCCTG
  81 TCCTGCAAACTGCAAATAGTAGTTCCTGAAGTGTTCACTTCCCTGTTTATCCAAACATCTTCCAATTTATTTTGTTTGTT
 161 CGGCATACAAATAATACCTATATCTTAATTGTAAGCAAAACTTTGGGGAAAGGATGAATAGAATTCATTTGATTATTTCT
 241 TCATGTGTGTTTAGTATCTGAATTTGAAACTCATCTGGTGGAAACCAAGTTTCAGGGGACATGAGTTTTCCAGCTTTTAT
 321 ACACACGTATCTCATTTTTATCAAAACATTTTGTTTAATTCAAAAAGTACATATTCCATGTTGATTTAATTCTAAGATGA
 401 ACCAATAAAGACATAATTCTTGTGACTTTTGGACAGTAGATTTATCAGTCTGTGAAGCGAAGCCAGCTTCAAAACATATC
 481 CCCAAGATTTGTACTTATATTTTCAAAAGGGCCTGGCCAGTTATATAAACCTGTTTTTGAATTATAATGATTAATTAAAA
 561 TTGCAAGTAGGTGTTTTTTCCAGTGTAGTTAGTAAAATACTTGTATTTTACAGTGTTGCATAAACTCTAGTGCTTAACTA
 641 ACTTTACTCTAAAAATTACTGTTGAACATCTTAAATATTTTTCTATATTTTCTACTTTCATAGCCATATTTTAACCTTTT
 721 CAACTTACTGGTGACCAAGCTTTTAGGTGATAAAGAATAAAAGAGGGAAGGGAAGAGTAAGGAAGCTATAAGAAAAATAG
 801 ATCTGATTCTTTGTTCCTTTACCTGTTAGACTTACAAAAAGTTTGTTTTTCTAATAAAATTTGTATCAACTTTGGGGCAT
 881 ATTAGGTTGAGGCCTTGGCTCCTGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGAGAGGAGGATCGCGTGAACCTGGAAG
 961 TTTGAGGCTGTAGTGAGCTATGATTGCACCAGTGCACTCCAGCTTGGATGACAGAGTAAGACCCTACCTCTAATAAAAAT
1041 TTTTAAAATTGTAAAACATTATAAAATTAATCAGTTATTTTAATCTGAAGCCAAGAACATGTAGAATGTTATGATTAGAG
1121 TTTATCACATATTAATGTATACTGGCAAATTGTGTTACTGGAGTATACCCATAGGAGGAATAAATTCAAACCTGTTTTAT
1201 TTATTTGAACCTATTTACGGTATGCTTAAGAATTGAATCAGTATAAATTCTCAAATATGGGAGAAATTTTGTTCTTGAGA
1281 ATTATCTGAGTCATTAATATTTTTCAAAAACAGCTCTCACTGACTTGAACCTCTTCTGTAAGCTCTAACCTTTTACCTGC
1361 TTTACATTTCCACTTGAATGTCTAGTAGGCATCTCTTGACCAAAAACAGCTTTTGATTCCTGTTCTCCAACCTGTTCCTC
1441 TCCTAGTTTTCTCCATCTCAGAAATGTTACTTCCTCTGCAAAGTCTTTCCCTGACTTATCTAAAATAATAACCTCCTCTG
1521 TTTGCTGTGGGAATTTGTATAGAATGGTGGGAAAATTTCAAGTTTCATATTTGGATTAGCTCTGACATTTATTTATCTGA
1601 ACACTGGTAATTGCCTCAGTAAAGACACTGATAATAAGTACCTTTTAGAGTTATTTTAATCTTTAATGCTTTAATGTGTA
1681 GGAAGAGTATAGTGTCCTGTTTTGCACAGAAAGGCATTCTGTAAATAATAAGTTGCCTTAATTTTCCTGTAATGTTCATT
1761 ATATTGTTGTGGGAAGGTATTTACTCCTATTATTAAAAATAAAAATGTGTAAAATTTACTACCTGAAAAAAAAAAAAAAA
1841 AAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucggUCGGU--UGA-GU-GUCACGUcu 5'
              |||:|  |:| || |||||||  
Target 5' agtgAGCTATGATTGCACCAGTGCAct 3'
972 - 998 141.00 -16.10
2
miRNA  3' ucggucgguuGAGUGUCACGUCu 5'
                    :|: |||||:|| 
Target 5' gtaggtgtttTTTCCAGTGTAGt 3'
567 - 589 133.00 -15.90
3
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            |::|: ||  :|:||||| | 
Target 5' tcCTGGTGAA--TATAGTGCTGc 3'
23 - 43 125.00 -12.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26575252 4 COSMIC
COSN26556998 13 COSMIC
COSN31600859 24 COSMIC
COSN30158938 26 COSMIC
COSN30179292 28 COSMIC
COSN30179290 29 COSMIC
COSN31613997 36 COSMIC
COSN26970625 58 COSMIC
COSN30460365 84 COSMIC
COSN31564405 127 COSMIC
COSN26671781 155 COSMIC
COSN31605508 162 COSMIC
COSN1128439 371 COSMIC
COSN20108960 376 COSMIC
COSN8736231 935 COSMIC
COSN25658961 1250 COSMIC
COSN27293215 1826 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1461079315 2 dbSNP
rs746474609 3 dbSNP
rs373998065 4 dbSNP
rs1032047014 5 dbSNP
rs780645711 8 dbSNP
rs747973479 11 dbSNP
rs748831574 12 dbSNP
rs749279821 14 dbSNP
rs1379752146 17 dbSNP
rs573744071 21 dbSNP
rs375887872 23 dbSNP
rs1453372998 25 dbSNP
rs1177289255 27 dbSNP
rs760632598 31 dbSNP
rs1296278154 34 dbSNP
rs764381233 37 dbSNP
rs776659228 44 dbSNP
rs1397834579 48 dbSNP
rs769434607 53 dbSNP
rs9282658 62 dbSNP
rs952890763 80 dbSNP
rs1383282654 86 dbSNP
rs1182803697 88 dbSNP
rs1285677542 90 dbSNP
rs1444978164 94 dbSNP
rs148807246 96 dbSNP
rs1202753914 98 dbSNP
rs1257439035 100 dbSNP
rs1260282320 103 dbSNP
rs868300535 112 dbSNP
rs1018498934 117 dbSNP
rs528501689 119 dbSNP
rs1313514770 124 dbSNP
rs976752552 128 dbSNP
rs547243050 132 dbSNP
rs373169887 137 dbSNP
rs1245738497 139 dbSNP
rs1185444197 141 dbSNP
rs566608597 144 dbSNP
rs967472656 162 dbSNP
rs1440480505 163 dbSNP
rs545410689 165 dbSNP
rs961200994 167 dbSNP
rs184393295 168 dbSNP
rs1288996773 181 dbSNP
rs925778195 182 dbSNP
rs1363674707 190 dbSNP
rs1433947874 227 dbSNP
rs1162802614 236 dbSNP
rs1358449867 251 dbSNP
rs1369909741 256 dbSNP
rs937212660 257 dbSNP
rs1303399900 270 dbSNP
rs530886491 273 dbSNP
rs1194524971 286 dbSNP
rs1401362524 295 dbSNP
rs1055553794 300 dbSNP
rs551019927 302 dbSNP
rs762754025 303 dbSNP
rs917138297 311 dbSNP
rs567785939 320 dbSNP
rs1377194929 325 dbSNP
rs142447277 327 dbSNP
rs1040471427 328 dbSNP
rs1036004503 330 dbSNP
rs546900560 335 dbSNP
rs1343032866 342 dbSNP
rs897513387 351 dbSNP
rs901934954 368 dbSNP
rs1405549905 372 dbSNP
rs141464656 372 dbSNP
rs113628894 374 dbSNP
rs199723723 374 dbSNP
rs3731480 374 dbSNP
rs201914580 377 dbSNP
rs1165988339 384 dbSNP
rs1461266556 393 dbSNP
rs994580634 400 dbSNP
rs1171589699 413 dbSNP
rs778999496 414 dbSNP
rs190098261 424 dbSNP
rs746593482 427 dbSNP
rs566817329 433 dbSNP
rs1257116570 434 dbSNP
rs892931725 435 dbSNP
rs1483176648 440 dbSNP
rs1339090288 441 dbSNP
rs1258323332 445 dbSNP
rs181773130 447 dbSNP
rs1198805611 460 dbSNP
rs1320960403 464 dbSNP
rs1011511727 470 dbSNP
rs1007031214 474 dbSNP
rs1022875058 476 dbSNP
rs557311968 477 dbSNP
rs867477773 481 dbSNP
rs571357048 485 dbSNP
rs536760417 494 dbSNP
rs1458257673 495 dbSNP
rs1390626647 505 dbSNP
rs1035314960 512 dbSNP
rs1378667515 517 dbSNP
rs184932784 525 dbSNP
rs1467433618 529 dbSNP
rs1427436159 531 dbSNP
rs1176460827 534 dbSNP
rs998869350 535 dbSNP
rs1020269576 561 dbSNP
rs1464426378 569 dbSNP
rs1026499237 574 dbSNP
rs573756240 581 dbSNP
rs978811178 585 dbSNP
rs531003966 591 dbSNP
rs1239245813 598 dbSNP
rs1200891775 605 dbSNP
rs925998849 614 dbSNP
rs1262086017 625 dbSNP
rs536408620 627 dbSNP
rs943414991 641 dbSNP
rs796283040 646 dbSNP
rs923231958 648 dbSNP
rs1377549826 660 dbSNP
rs552083132 674 dbSNP
rs1311246212 687 dbSNP
rs1450148898 694 dbSNP
rs1404227733 700 dbSNP
rs1388896449 708 dbSNP
rs1336264376 718 dbSNP
rs991252163 721 dbSNP
rs570698696 727 dbSNP
rs1156885807 729 dbSNP
rs892998671 730 dbSNP
rs771819651 734 dbSNP
rs113311223 744 dbSNP
rs918927650 745 dbSNP
rs1443124777 762 dbSNP
rs905781244 768 dbSNP
rs776907998 772 dbSNP
rs189829306 783 dbSNP
rs1198048265 785 dbSNP
rs1048767326 789 dbSNP
rs1489557570 801 dbSNP
rs537919085 808 dbSNP
rs1288022429 810 dbSNP
rs896789185 810 dbSNP
rs1431220464 814 dbSNP
rs1007335617 818 dbSNP
rs1172778733 824 dbSNP
rs151312608 839 dbSNP
rs993953816 849 dbSNP
rs1424198947 853 dbSNP
rs1039856921 858 dbSNP
rs952281786 864 dbSNP
rs1167841670 866 dbSNP
rs549875618 871 dbSNP
rs984923724 887 dbSNP
rs998438095 888 dbSNP
rs1020992549 895 dbSNP
rs903447742 896 dbSNP
rs1160925923 901 dbSNP
rs1423145620 906 dbSNP
rs545446097 915 dbSNP
rs1384930241 921 dbSNP
rs140546391 922 dbSNP
rs1032986172 923 dbSNP
rs1473607950 934 dbSNP
rs144047942 946 dbSNP
rs567889 947 dbSNP
rs867555391 948 dbSNP
rs368655022 949 dbSNP
rs971677146 950 dbSNP
rs988944790 953 dbSNP
rs1341628002 955 dbSNP
rs1218107471 966 dbSNP
rs561393899 971 dbSNP
rs1268601050 972 dbSNP
rs530272683 973 dbSNP
rs1399503558 979 dbSNP
rs1323581880 987 dbSNP
rs1222663973 988 dbSNP
rs914637377 1000 dbSNP
rs34215005 1004 dbSNP
rs1300593475 1005 dbSNP
rs146445217 1018 dbSNP
rs551723322 1028 dbSNP
rs1165978004 1029 dbSNP
rs984433707 1039 dbSNP
rs1166897737 1040 dbSNP
rs927080479 1040 dbSNP
rs1477414696 1053 dbSNP
rs938596460 1058 dbSNP
rs1196627164 1065 dbSNP
rs1490179143 1070 dbSNP
rs1247187638 1073 dbSNP
rs1057412025 1077 dbSNP
rs1435819396 1085 dbSNP
rs1271166799 1091 dbSNP
rs867617337 1101 dbSNP
rs560443248 1105 dbSNP
rs1318868650 1109 dbSNP
rs370171293 1113 dbSNP
rs896845485 1116 dbSNP
rs910246133 1120 dbSNP
rs140816182 1121 dbSNP
rs1347716742 1133 dbSNP
rs1423156691 1138 dbSNP
rs1040559377 1140 dbSNP
rs1300374712 1144 dbSNP
rs552421232 1146 dbSNP
rs1048183188 1150 dbSNP
rs1361742416 1154 dbSNP
rs1425294398 1167 dbSNP
rs1189216717 1170 dbSNP
rs1173691372 1172 dbSNP
rs1432055258 1176 dbSNP
rs1425819515 1190 dbSNP
rs773225208 1192 dbSNP
rs1192795100 1196 dbSNP
rs1400004414 1211 dbSNP
rs1479539900 1212 dbSNP
rs1268924766 1214 dbSNP
rs901335616 1215 dbSNP
rs888197735 1216 dbSNP
rs934112906 1219 dbSNP
rs1041895640 1220 dbSNP
rs1381498057 1223 dbSNP
rs1017741795 1236 dbSNP
rs565362064 1252 dbSNP
rs1311618759 1258 dbSNP
rs1302589675 1268 dbSNP
rs1221495673 1272 dbSNP
rs1371792226 1282 dbSNP
rs997748107 1286 dbSNP
rs1447935595 1287 dbSNP
rs1030992149 1289 dbSNP
rs1334235867 1290 dbSNP
rs528324506 1292 dbSNP
rs535067031 1301 dbSNP
rs1000422066 1315 dbSNP
rs914545162 1319 dbSNP
rs1218518953 1320 dbSNP
rs1032956466 1321 dbSNP
rs968801474 1329 dbSNP
rs894508571 1333 dbSNP
rs1179066512 1338 dbSNP
rs1286554540 1344 dbSNP
rs1013001066 1345 dbSNP
rs1024771987 1351 dbSNP
rs1441263637 1358 dbSNP
rs980156664 1376 dbSNP
rs971515016 1378 dbSNP
rs763049367 1381 dbSNP
rs1180266399 1383 dbSNP
rs766801457 1385 dbSNP
rs1483044508 1411 dbSNP
rs1487831828 1413 dbSNP
rs761790614 1417 dbSNP
rs1285885772 1419 dbSNP
rs1026172464 1423 dbSNP
rs1379507579 1431 dbSNP
rs938480103 1437 dbSNP
rs1057083995 1441 dbSNP
rs951925606 1479 dbSNP
rs144623058 1482 dbSNP
rs1180724862 1494 dbSNP
rs1359847030 1495 dbSNP
rs370678835 1496 dbSNP
rs1421291632 1498 dbSNP
rs943053106 1501 dbSNP
rs1186558281 1517 dbSNP
rs1423507722 1518 dbSNP
rs1441086072 1519 dbSNP
rs748754627 1519 dbSNP
rs572649402 1525 dbSNP
rs975774215 1532 dbSNP
rs1487323349 1546 dbSNP
rs1263124699 1550 dbSNP
rs11220176 1560 dbSNP
rs1006613036 1570 dbSNP
rs949295920 1596 dbSNP
rs1244492261 1597 dbSNP
rs1321991357 1603 dbSNP
rs1381387110 1608 dbSNP
rs1380040775 1618 dbSNP
rs550412202 1622 dbSNP
rs998090409 1636 dbSNP
rs1298268826 1637 dbSNP
rs1030458160 1638 dbSNP
rs770167851 1641 dbSNP
rs1361354186 1647 dbSNP
rs1042253999 1652 dbSNP
rs1448865039 1672 dbSNP
rs1369295606 1673 dbSNP
rs903384237 1678 dbSNP
rs1476886605 1679 dbSNP
rs1380667947 1684 dbSNP
rs567344136 1684 dbSNP
rs936244239 1686 dbSNP
rs138368921 1691 dbSNP
rs1489585943 1692 dbSNP
rs894732706 1696 dbSNP
rs1013300343 1701 dbSNP
rs1045744018 1704 dbSNP
rs907259154 1716 dbSNP
rs993621795 1717 dbSNP
rs568382140 1722 dbSNP
rs1026141402 1729 dbSNP
rs1242658815 1732 dbSNP
rs951896323 1733 dbSNP
rs553181272 1737 dbSNP
rs1266848410 1742 dbSNP
rs1352764643 1743 dbSNP
rs1316906472 1744 dbSNP
rs1278328639 1749 dbSNP
rs180885007 1751 dbSNP
rs1280681048 1752 dbSNP
rs1010459027 1753 dbSNP
rs1442876902 1758 dbSNP
rs1269270365 1763 dbSNP
rs1017491515 1770 dbSNP
rs964665283 1783 dbSNP
rs1387154327 1797 dbSNP
rs1392537814 1801 dbSNP
rs1208822841 1804 dbSNP
rs1296239259 1806 dbSNP
rs976124566 1808 dbSNP
rs968685585 1812 dbSNP
rs538949609 1817 dbSNP
rs1449106730 1819 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucGGUU--GAGUGUCACGUCu 5'
                ||||  || : ||||||| 
Target 5' ------CCAAAGCU-GGAGUGCAGu 3'
1 - 18
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000534070.1 | 3UTR | CCAAAGCUGGAGUGCAGUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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