pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CHAF1B   
Synonyms CAF-1, CAF-IP60, CAF1, CAF1A, CAF1P60, MPHOSPH7, MPP7
Description chromatin assembly factor 1 subunit B
Transcript NM_005441   
Expression
Putative miRNA Targets on CHAF1B
3'UTR of CHAF1B
(miRNA target sites are highlighted)
>CHAF1B|NM_005441|3'UTR
   1 TGGGACCTCGGCTTCTGCTCGAAGCCTACCAGGCTCCCGGTGTGTGCAGGGAGACGGTAAAGCTGGAGGTGCCTGAGACC
  81 AGGGCTTCCATGGAGCGGGACACACTGTAAATGGATTTCTATAACAGAAGTGACATGTGTACTGATTTTTCTCCAGAAAT
 161 ATGGATGCTGTTGTATTCAGTATCCATTTTTAACTTGGGACATGAACGTTTTAACGTAGTAAATCCTCTTTTTGATGAGT
 241 TTCTGAAACTGGAGCGGTTCAACGTTATCCAGTGTGAAAATCAGTGAGTCCTCCCTGGCATCCTCGTGAAAGTGCACACA
 321 CTTCATGGAGGGACTCCTTTTCAATAAGAATTAGGAAGATGAGAAAGTAATTTGAGATTTTACTCTGTCGAATTTTAGAG
 401 TATTTGAAGTGATTGTTAGATTTCACTTCTAAGGAGTTGATTGATTAAACTTTGGAAGGTAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAG---UGUCACGUcu 5'
            |::||   |||   | ||||||  
Target 5' ccCTGGCATCCTCGTGAAAGTGCAca 3'
293 - 318 133.00 -14.90
2
miRNA  3' ucGGUCGGUUGAGUG----UCACGUCu 5'
            |:| | ::||| |     |||||| 
Target 5' gcCTACCAGGCTCCCGGTGTGTGCAGg 3'
24 - 50 123.00 -20.40
3
miRNA  3' ucgGUC-GGUUG-AGU--GUCACGUcu 5'
             |:| :|||| |:|  |||||::  
Target 5' gagCGGTTCAACGTTATCCAGTGTGaa 3'
252 - 278 110.00 -16.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30492041 4 COSMIC
COSN31519041 8 COSMIC
COSN31509706 10 COSMIC
COSN30476841 11 COSMIC
COSN31514810 11 COSMIC
COSN30116325 37 COSMIC
COSN17858474 47 COSMIC
COSN5452941 363 COSMIC
COSN10026208 407 COSMIC
COSN5986280 493 COSMIC
COSN29145828 661 COSMIC
COSN8007416 932 COSMIC
COSN22273454 1014 COSMIC
COSN19448057 1437 COSMIC
COSN19448058 1438 COSMIC
COSN5136233 1493 COSMIC
COSN10026209 1515 COSMIC
COSN16549840 1544 COSMIC
COSN20317282 1617 COSMIC
COSN27442315 1665 COSMIC
COSN8565469 1732 COSMIC
COSN23735626 2094 COSMIC
COSN17846701 2121 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs745779016 3 dbSNP
rs774837946 6 dbSNP
rs1488424231 10 dbSNP
rs758449845 11 dbSNP
rs779982090 14 dbSNP
rs1437983824 18 dbSNP
rs746723654 21 dbSNP
rs768501505 22 dbSNP
rs1211636513 25 dbSNP
rs181653099 26 dbSNP
rs1162381017 27 dbSNP
rs377724094 29 dbSNP
rs1458325354 34 dbSNP
rs916492037 35 dbSNP
rs772745921 36 dbSNP
rs377511926 39 dbSNP
rs202093155 40 dbSNP
rs371122870 41 dbSNP
rs374622617 47 dbSNP
rs753959758 48 dbSNP
rs549374297 56 dbSNP
rs1202759808 57 dbSNP
rs935334426 72 dbSNP
rs1054258666 97 dbSNP
rs893915140 100 dbSNP
rs926456979 103 dbSNP
rs551069142 104 dbSNP
rs937893706 105 dbSNP
rs569223539 122 dbSNP
rs1219037908 134 dbSNP
rs1319326766 135 dbSNP
rs1039907534 137 dbSNP
rs901431320 140 dbSNP
rs1457388680 144 dbSNP
rs998354232 147 dbSNP
rs1025865276 148 dbSNP
rs764225603 153 dbSNP
rs950363595 156 dbSNP
rs1457704054 163 dbSNP
rs1488158924 173 dbSNP
rs531809271 176 dbSNP
rs113542793 182 dbSNP
rs1004575162 198 dbSNP
rs562769843 203 dbSNP
rs1427284365 207 dbSNP
rs1188607115 208 dbSNP
rs551615407 209 dbSNP
rs571857716 216 dbSNP
rs8596 217 dbSNP
rs1271493244 234 dbSNP
rs878953065 235 dbSNP
rs185095355 256 dbSNP
rs1384051987 260 dbSNP
rs757442115 263 dbSNP
rs970554640 264 dbSNP
rs1160079684 265 dbSNP
rs1358174182 269 dbSNP
rs1000698315 272 dbSNP
rs376663242 282 dbSNP
rs1399901919 285 dbSNP
rs1339986287 286 dbSNP
rs567967052 289 dbSNP
rs1435177165 291 dbSNP
rs1366803998 292 dbSNP
rs535409567 305 dbSNP
rs868216083 306 dbSNP
rs555366765 307 dbSNP
rs1165378423 309 dbSNP
rs1428311943 311 dbSNP
rs1390097593 315 dbSNP
rs766946573 318 dbSNP
rs1283717703 322 dbSNP
rs372828379 336 dbSNP
rs1251259703 338 dbSNP
rs575162443 349 dbSNP
rs935311999 363 dbSNP
rs1452429163 367 dbSNP
rs1267713811 368 dbSNP
rs997049069 369 dbSNP
rs1481986680 375 dbSNP
rs1273803559 387 dbSNP
rs1029823318 390 dbSNP
rs1053821784 391 dbSNP
rs1353168478 397 dbSNP
rs915304825 436 dbSNP
rs750736887 443 dbSNP
rs1331335681 461 dbSNP
rs1201415963 466 dbSNP
rs942839601 469 dbSNP
rs1408375248 490 dbSNP
rs544281789 493 dbSNP
rs1441239791 494 dbSNP
rs962337010 495 dbSNP
rs1187418954 497 dbSNP
rs1242060708 498 dbSNP
rs1423088999 501 dbSNP
rs557610606 502 dbSNP
rs113332086 514 dbSNP
rs1439789498 515 dbSNP
rs1379580768 524 dbSNP
rs1179996036 532 dbSNP
rs901316496 534 dbSNP
rs1481934963 540 dbSNP
rs1250846943 543 dbSNP
rs1205727712 545 dbSNP
rs926433139 551 dbSNP
rs959361245 552 dbSNP
rs749928560 559 dbSNP
rs992031948 567 dbSNP
rs1276230617 568 dbSNP
rs1452544394 570 dbSNP
rs934178913 571 dbSNP
rs1047284376 572 dbSNP
rs1357929538 580 dbSNP
rs530185892 585 dbSNP
rs1415092954 587 dbSNP
rs945312270 598 dbSNP
rs1412759153 600 dbSNP
rs887388364 613 dbSNP
rs115117611 614 dbSNP
rs925196186 622 dbSNP
rs1400866184 641 dbSNP
rs540041198 652 dbSNP
rs559981622 654 dbSNP
rs16994069 659 dbSNP
rs1442464723 665 dbSNP
rs1376462283 671 dbSNP
rs1206384464 675 dbSNP
rs1011961942 676 dbSNP
rs1234208280 687 dbSNP
rs1269089522 707 dbSNP
rs899943849 708 dbSNP
rs1364831032 709 dbSNP
rs542583132 719 dbSNP
rs866518866 728 dbSNP
rs1343305339 731 dbSNP
rs1284098069 733 dbSNP
rs1023401309 739 dbSNP
rs1200443540 748 dbSNP
rs970526980 749 dbSNP
rs1259273333 750 dbSNP
rs1459452929 751 dbSNP
rs756062915 752 dbSNP
rs2129798 753 dbSNP
rs1051285698 757 dbSNP
rs1402213705 758 dbSNP
rs1200008764 760 dbSNP
rs1235805384 762 dbSNP
rs1030911573 767 dbSNP
rs1011873203 768 dbSNP
rs1379213056 770 dbSNP
rs1476927923 776 dbSNP
rs956684681 780 dbSNP
rs1464100113 782 dbSNP
rs1175357367 784 dbSNP
rs1424282276 785 dbSNP
rs1467071590 787 dbSNP
rs562883028 790 dbSNP
rs1395824045 791 dbSNP
rs1387628136 792 dbSNP
rs1325756441 793 dbSNP
rs915207807 794 dbSNP
rs368595174 796 dbSNP
rs1015887210 797 dbSNP
rs201247343 802 dbSNP
rs190836496 805 dbSNP
rs182071159 806 dbSNP
rs571769639 809 dbSNP
rs934146358 810 dbSNP
rs1047253469 813 dbSNP
rs151125026 821 dbSNP
rs1480019804 831 dbSNP
rs7275524 832 dbSNP
rs1039032299 846 dbSNP
rs1405816163 847 dbSNP
rs1024772952 848 dbSNP
rs898801117 851 dbSNP
rs1448323736 854 dbSNP
rs749185430 859 dbSNP
rs779727318 867 dbSNP
rs1187860004 870 dbSNP
rs1487310591 876 dbSNP
rs977894204 876 dbSNP
rs925228822 884 dbSNP
rs1449473119 889 dbSNP
rs1273079961 891 dbSNP
rs936572765 892 dbSNP
rs1342914219 894 dbSNP
rs866362674 895 dbSNP
rs906311071 896 dbSNP
rs1168439837 897 dbSNP
rs567058820 900 dbSNP
rs1372633775 903 dbSNP
rs1294407431 904 dbSNP
rs921241457 912 dbSNP
rs768177637 914 dbSNP
rs1165037317 915 dbSNP
rs1171914887 916 dbSNP
rs1254677065 916 dbSNP
rs749576099 916 dbSNP
rs774367943 916 dbSNP
rs1431021945 924 dbSNP
rs1388876305 928 dbSNP
rs1039223300 930 dbSNP
rs1250107369 930 dbSNP
rs540433867 930 dbSNP
rs746908856 930 dbSNP
rs774375568 930 dbSNP
rs1205013270 931 dbSNP
rs1030878983 932 dbSNP
rs956750337 934 dbSNP
rs1299235723 942 dbSNP
rs1342772240 948 dbSNP
rs1225621436 949 dbSNP
rs1347113839 952 dbSNP
rs1051145266 953 dbSNP
rs989379491 953 dbSNP
rs187226984 955 dbSNP
rs189927002 956 dbSNP
rs1299878402 961 dbSNP
rs1410140728 963 dbSNP
rs1464087185 963 dbSNP
rs1470765717 963 dbSNP
rs550243275 963 dbSNP
rs7280190 965 dbSNP
rs1253270353 966 dbSNP
rs1266641928 967 dbSNP
rs1353874295 971 dbSNP
rs1482947634 972 dbSNP
rs996131044 972 dbSNP
rs1221236005 973 dbSNP
rs537491648 974 dbSNP
rs1489140033 983 dbSNP
rs778013275 985 dbSNP
rs1227544337 996 dbSNP
rs1191165510 1003 dbSNP
rs145013661 1004 dbSNP
rs577328318 1005 dbSNP
rs1189766608 1020 dbSNP
rs1377751303 1028 dbSNP
rs1013198989 1029 dbSNP
rs908673871 1033 dbSNP
rs1424340498 1039 dbSNP
rs1158038660 1040 dbSNP
rs533711144 1050 dbSNP
rs1038591807 1051 dbSNP
rs1024720650 1060 dbSNP
rs1163239287 1062 dbSNP
rs916175145 1065 dbSNP
rs868828621 1067 dbSNP
rs1044788734 1068 dbSNP
rs906281710 1069 dbSNP
rs1209640431 1077 dbSNP
rs1003255476 1078 dbSNP
rs529029230 1079 dbSNP
rs1398277365 1081 dbSNP
rs146776913 1096 dbSNP
rs1242448458 1098 dbSNP
rs1011175556 1100 dbSNP
rs1321052123 1108 dbSNP
rs1315723928 1119 dbSNP
rs180723643 1121 dbSNP
rs1362462614 1125 dbSNP
rs1319429999 1126 dbSNP
rs921284331 1128 dbSNP
rs542897476 1130 dbSNP
rs964338961 1132 dbSNP
rs218632 1137 dbSNP
rs1029577296 1138 dbSNP
rs1457779260 1143 dbSNP
rs955380783 1146 dbSNP
rs185822474 1151 dbSNP
rs940071734 1153 dbSNP
rs908636198 1167 dbSNP
rs771564845 1171 dbSNP
rs962893701 1174 dbSNP
rs974678339 1176 dbSNP
rs1263500851 1180 dbSNP
rs1202104551 1184 dbSNP
rs1207837435 1184 dbSNP
rs916158501 1196 dbSNP
rs1248127519 1198 dbSNP
rs145667793 1201 dbSNP
rs565340948 1208 dbSNP
rs1227622940 1209 dbSNP
rs1327829920 1210 dbSNP
rs1046018002 1214 dbSNP
rs745923946 1216 dbSNP
rs895398925 1217 dbSNP
rs190149225 1226 dbSNP
rs939012453 1228 dbSNP
rs1305448762 1232 dbSNP
rs1438006589 1233 dbSNP
rs547941817 1234 dbSNP
rs561453592 1240 dbSNP
rs892238594 1241 dbSNP
rs1468086880 1242 dbSNP
rs1301593163 1243 dbSNP
rs999207693 1247 dbSNP
rs1032179446 1251 dbSNP
rs1432354012 1257 dbSNP
rs1010732214 1258 dbSNP
rs1269367810 1267 dbSNP
rs1482038926 1268 dbSNP
rs376864284 1273 dbSNP
rs1309296768 1284 dbSNP
rs1043990317 1285 dbSNP
rs1232123524 1289 dbSNP
rs369457759 1289 dbSNP
rs138215273 1290 dbSNP
rs1029364094 1293 dbSNP
rs1408468599 1294 dbSNP
rs954592067 1297 dbSNP
rs1378721148 1308 dbSNP
rs1221685876 1316 dbSNP
rs986827906 1320 dbSNP
rs374199909 1321 dbSNP
rs1172168553 1344 dbSNP
rs1470436171 1349 dbSNP
rs1429656673 1350 dbSNP
rs1312546650 1353 dbSNP
rs1471522128 1354 dbSNP
rs1211910663 1355 dbSNP
rs1250963701 1364 dbSNP
rs1261185349 1372 dbSNP
rs1460788793 1377 dbSNP
rs899677831 1381 dbSNP
rs550447688 1382 dbSNP
rs1029546296 1395 dbSNP
rs1323817135 1398 dbSNP
rs1240077127 1400 dbSNP
rs955349737 1407 dbSNP
rs1004190918 1412 dbSNP
rs1226927905 1418 dbSNP
rs377379355 1420 dbSNP
rs1015667395 1421 dbSNP
rs1445029667 1423 dbSNP
rs1338721654 1425 dbSNP
rs963155330 1435 dbSNP
rs931513904 1447 dbSNP
rs974267948 1461 dbSNP
rs1408564140 1468 dbSNP
rs1157280248 1469 dbSNP
rs916026443 1473 dbSNP
rs1176828959 1474 dbSNP
rs1159026611 1482 dbSNP
rs537418547 1488 dbSNP
rs981662433 1489 dbSNP
rs928891655 1493 dbSNP
rs916846139 1494 dbSNP
rs938981482 1504 dbSNP
rs1206477035 1505 dbSNP
rs949609729 1508 dbSNP
rs149096619 1511 dbSNP
rs770461221 1512 dbSNP
rs111472207 1515 dbSNP
rs1246779128 1519 dbSNP
rs946419078 1520 dbSNP
rs1043489531 1523 dbSNP
rs1331488628 1525 dbSNP
rs1401840475 1539 dbSNP
rs1434675149 1543 dbSNP
rs899645058 1546 dbSNP
rs932503956 1547 dbSNP
rs1402301158 1553 dbSNP
rs1411520183 1558 dbSNP
rs1162905333 1566 dbSNP
rs1439646192 1568 dbSNP
rs1444678894 1568 dbSNP
rs1050949910 1570 dbSNP
rs776170091 1571 dbSNP
rs1367789995 1581 dbSNP
rs1004211439 1592 dbSNP
rs1220774348 1595 dbSNP
rs1016052938 1614 dbSNP
rs763500206 1615 dbSNP
rs537807257 1616 dbSNP
rs1219127787 1617 dbSNP
rs1289756329 1622 dbSNP
rs996433661 1628 dbSNP
rs1260150415 1649 dbSNP
rs1028811193 1652 dbSNP
rs1295513640 1652 dbSNP
rs747533741 1652 dbSNP
rs1272208999 1654 dbSNP
rs1305821735 1665 dbSNP
rs1347940965 1666 dbSNP
rs1302423492 1667 dbSNP
rs143123942 1672 dbSNP
rs570937437 1680 dbSNP
rs1008795903 1681 dbSNP
rs1427476318 1682 dbSNP
rs1419770367 1690 dbSNP
rs1187941798 1693 dbSNP
rs1489565176 1694 dbSNP
rs995963540 1698 dbSNP
rs961333339 1699 dbSNP
rs1023069588 1701 dbSNP
rs1273193518 1702 dbSNP
rs183844901 1709 dbSNP
rs970191477 1710 dbSNP
rs981631513 1711 dbSNP
rs1035935598 1714 dbSNP
rs956313969 1719 dbSNP
rs868542761 1721 dbSNP
rs1347315960 1728 dbSNP
rs1422039464 1730 dbSNP
rs913524055 1754 dbSNP
rs991408874 1757 dbSNP
rs1354645822 1759 dbSNP
rs1169092343 1761 dbSNP
rs946413499 1766 dbSNP
rs979565024 1768 dbSNP
rs916726825 1773 dbSNP
rs921034559 1775 dbSNP
rs148278624 1777 dbSNP
rs932471480 1782 dbSNP
rs1050921661 1792 dbSNP
rs1177180619 1795 dbSNP
rs891040963 1797 dbSNP
rs1234692576 1802 dbSNP
rs573774333 1805 dbSNP
rs935029273 1806 dbSNP
rs1053436769 1808 dbSNP
rs2898286 1809 dbSNP
rs1400597152 1810 dbSNP
rs1304735155 1815 dbSNP
rs1390772819 1822 dbSNP
rs931719568 1828 dbSNP
rs1299390715 1836 dbSNP
rs1445264950 1838 dbSNP
rs1280031412 1840 dbSNP
rs1176774445 1845 dbSNP
rs898462529 1848 dbSNP
rs1050705020 1849 dbSNP
rs1158950526 1852 dbSNP
rs751589270 1855 dbSNP
rs1252671206 1859 dbSNP
rs1214092817 1869 dbSNP
rs188340013 1872 dbSNP
rs1323773552 1882 dbSNP
rs1205855683 1885 dbSNP
rs1462450143 1898 dbSNP
rs1258755560 1899 dbSNP
rs576271006 1902 dbSNP
rs1291583125 1903 dbSNP
rs1309136509 1907 dbSNP
rs1243114726 1911 dbSNP
rs1381460034 1920 dbSNP
rs147354551 1925 dbSNP
rs540120404 1927 dbSNP
rs890253927 1935 dbSNP
rs1386831235 1936 dbSNP
rs574483815 1937 dbSNP
rs1035820595 1938 dbSNP
rs572508686 1946 dbSNP
rs541530524 1947 dbSNP
rs897728170 1951 dbSNP
rs994604791 1952 dbSNP
rs1161266460 1956 dbSNP
rs561415373 1965 dbSNP
rs1204323498 1967 dbSNP
rs763102152 1975 dbSNP
rs572963001 1976 dbSNP
rs1358041528 1980 dbSNP
rs970905605 1980 dbSNP
rs1247626973 1985 dbSNP
rs191662053 1992 dbSNP
rs1324312633 2001 dbSNP
rs982244273 2007 dbSNP
rs1284924824 2008 dbSNP
rs1301792304 2010 dbSNP
rs1424600987 2011 dbSNP
rs1381413503 2013 dbSNP
rs563973361 2022 dbSNP
rs879532023 2028 dbSNP
rs768436209 2039 dbSNP
rs924217103 2043 dbSNP
rs921006671 2056 dbSNP
rs1447797970 2058 dbSNP
rs532672843 2060 dbSNP
rs755970256 2063 dbSNP
rs989562777 2070 dbSNP
rs1314640943 2074 dbSNP
rs986518315 2075 dbSNP
rs914886133 2080 dbSNP
rs1490166675 2084 dbSNP
rs552485153 2085 dbSNP
rs1354636886 2092 dbSNP
rs939883594 2093 dbSNP
rs1037332911 2094 dbSNP
rs919878638 2114 dbSNP
rs1328509105 2121 dbSNP
rs890199773 2124 dbSNP
rs1404795573 2138 dbSNP
rs1346683403 2141 dbSNP
rs570900226 2143 dbSNP
rs527331698 2146 dbSNP
rs1044454262 2151 dbSNP
rs1036185130 2156 dbSNP
rs547040422 2160 dbSNP
rs183888868 2174 dbSNP
rs994741503 2175 dbSNP
rs1445936146 2185 dbSNP
rs1181140003 2187 dbSNP
rs112100545 2189 dbSNP
rs1439873634 2193 dbSNP
rs114229582 2198 dbSNP
rs1160134128 2210 dbSNP
rs1249234485 2219 dbSNP
rs556104815 2223 dbSNP
rs1382505513 2236 dbSNP
rs1341035489 2254 dbSNP
rs1012655521 2256 dbSNP
rs1023715938 2274 dbSNP
rs1334764695 2277 dbSNP
rs891933064 2278 dbSNP
rs1003693562 2283 dbSNP
rs1010424878 2304 dbSNP
rs1329625445 2309 dbSNP
rs1031096983 2311 dbSNP
rs1450586131 2317 dbSNP
rs766115735 2321 dbSNP
rs1314413352 2325 dbSNP
rs1176039281 2328 dbSNP
rs1469072761 2338 dbSNP
rs569863483 2344 dbSNP
rs1174199470 2345 dbSNP
rs1242548125 2346 dbSNP
rs1278211182 2347 dbSNP
rs969029566 2364 dbSNP
rs1181888472 2374 dbSNP
rs754844489 2376 dbSNP
rs1240854364 2377 dbSNP
rs1202678884 2380 dbSNP
rs1027907954 2398 dbSNP
rs1265407044 2399 dbSNP
rs538921740 2408 dbSNP
rs541514900 2409 dbSNP
rs953107324 2410 dbSNP
rs912332804 2413 dbSNP
rs371044853 2415 dbSNP
rs1336274843 2416 dbSNP
rs1457988186 2426 dbSNP
rs972621828 2436 dbSNP
rs1406469794 2439 dbSNP
rs1183518628 2443 dbSNP
rs1335933985 2444 dbSNP
rs865873001 2451 dbSNP
rs1361650748 2453 dbSNP
rs911673867 2455 dbSNP
rs1469443407 2456 dbSNP
rs1159117095 2462 dbSNP
rs1172909448 2463 dbSNP
rs1440960252 2465 dbSNP
rs553681128 2465 dbSNP
rs558936139 2466 dbSNP
rs572470233 2468 dbSNP
rs944410894 2470 dbSNP
rs1182542339 2471 dbSNP
rs1036216182 2477 dbSNP
rs377422975 2479 dbSNP
rs1336211434 2482 dbSNP
rs1207440834 2483 dbSNP
rs577107606 2483 dbSNP
rs79511009 2483 dbSNP
rs77804805 2484 dbSNP
rs1401113975 2485 dbSNP
rs1357311331 2486 dbSNP
rs1393413342 2486 dbSNP
rs1314479498 2493 dbSNP
rs1246890837 2496 dbSNP
rs1385248564 2497 dbSNP
rs868331120 2497 dbSNP
rs1428350595 2498 dbSNP
rs1327115965 2499 dbSNP
rs1335324668 2501 dbSNP
rs1318836906 2503 dbSNP
rs1363095898 2504 dbSNP
rs930566518 2504 dbSNP
rs1049008254 2507 dbSNP
rs374098682 2509 dbSNP
rs919830591 2526 dbSNP
rs1012228048 2528 dbSNP
rs1045029855 2541 dbSNP
rs1475267578 2554 dbSNP
rs1243075944 2555 dbSNP
rs931206005 2566 dbSNP
rs1490003998 2579 dbSNP
rs761663220 2584 dbSNP
rs1044342552 2597 dbSNP
rs1223289211 2600 dbSNP
rs778464790 2603 dbSNP
rs1003557698 2616 dbSNP
rs1318019509 2617 dbSNP
rs1031129528 2619 dbSNP
rs956861893 2623 dbSNP
rs1248020188 2625 dbSNP
rs927250084 2627 dbSNP
rs1199373462 2630 dbSNP
rs1022583274 2633 dbSNP
rs1270744384 2637 dbSNP
rs865994119 2639 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293/HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1067870. RNA binding protein: AGO2. Condition:Ago2 IP-seq (mitotic cells) ...

- Kishore S; Gruber AR; Jedlinski DJ; Syed et al., 2013, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucggUUGAGUGUCACGUCu 5'
                  ::|| : ||||||| 
Target 5' -------aGGCU-GGAGUGCAGu 3'
1 - 15
Article - Kishore S; Gruber AR; Jedlinski DJ; Syed et al.
- Genome biology, 2013
BACKGROUND: In recent years, a variety of small RNAs derived from other RNAs with well-known functions such as tRNAs and snoRNAs, have been identified. The functional relevance of these RNAs is largely unknown. To gain insight into the complexity of snoRNA processing and the functional relevance of snoRNA-derived small RNAs, we sequence long and short RNAs, small RNAs that co-precipitate with the Argonaute 2 protein and RNA fragments obtained in photoreactive nucleotide-enhanced crosslinking and immunoprecipitation (PAR-CLIP) of core snoRNA-associated proteins. RESULTS: Analysis of these data sets reveals that many loci in the human genome reproducibly give rise to C/D box-like snoRNAs, whose expression and evolutionary conservation are typically less pronounced relative to the snoRNAs that are currently cataloged. We further find that virtually all C/D box snoRNAs are specifically processed inside the regions of terminal complementarity, retaining in the mature form only 4-5 nucleotides upstream of the C box and 2-5 nucleotides downstream of the D box. Sequencing of the total and Argonaute 2-associated populations of small RNAs reveals that despite their cellular abundance, C/D box-derived small RNAs are not efficiently incorporated into the Ago2 protein. CONCLUSIONS: We conclude that the human genome encodes a large number of snoRNAs that are processed along the canonical pathway and expressed at relatively low levels. Generation of snoRNA-derived processing products with alternative, particularly miRNA-like, functions appears to be uncommon.
LinkOut: [PMID: 23706177]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucgguUGAGUGUCACGUCu 5'
                   :|| : ||||||| 
Target 5' ---------GCU-GGAGUGCAGu 3'
1 - 13
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1067870
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293/HeLa / Ago2 IP-seq (mitotic cells)
Location of target site ENST00000314103.5 | 3UTR | AGGCUGGAGUGCAGUGGCGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23706177 / GSE43666
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000314103.5 | 3UTR | GCUGGAGUGCAGUGGCGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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