pre-miRNA Information
pre-miRNA hsa-mir-23a   
Genomic Coordinates chr19: 13836587 - 13836659
Synonyms MIRN23A, hsa-mir-23a, miRNA23A, MIR23A
Description Homo sapiens miR-23a stem-loop
Comment This miRNA was previously named miR-23 . This finding was later retracted after the discovery that the regulated gene was human homolog of ES1 (HES1), whose function is unknown.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-23a-5p
Sequence 9| GGGGUUCCUGGGGAUGGGAUUU |30
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs748509260 12 dbSNP
rs1205403719 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C17orf75   
Synonyms NJMU-R1, SRI2
Description chromosome 17 open reading frame 75
Transcript NM_022344   
Expression
Putative miRNA Targets on C17orf75
3'UTR of C17orf75
(miRNA target sites are highlighted)
>C17orf75|NM_022344|3'UTR
   1 TCATATGTTTTGAGATAATTGTATGATCAAGTTGTATATTTAAGTCTTAGTGTTTGAAATTGCAGTTATAATTGTTCATA
  81 GGATTGCTATTTAAGATGATTTGAAACTCAATCCAGATTTTCTTTTTGTATTTTACCAATTTAACTTAAATAAAAATCTG
 161 AAGAACATCTTCACTGAGTCCTAGATAGATAATGTATGTGAGAGTTGTGAAATTTTAGTGTCTCACTGGCCCCATAAATT
 241 CCACGCTTCAGGAAGTTGTTGCTTAAAAAATTTCAGAGATGATTTTGTTTGTGGCTTTTCTCAGGAAAAGCCTGAGTTTG
 321 CTGCAGTATTTAGCAACTTTTCTTCTCAGAAAAACCATAATACTTCCTTTTCAGTGGACTGTAGCTTCTTAAAAAAAAAA
 401 ATGTAATTCTAGTCTTAGAACAGATTAATACCACTACACCAGTTCAGAGATAGATCTGTGCATCCTGTGGGTGCTTGATA
 481 CATTTTTTTGTCTAGTTGATAACGGCATGGATGATAAAGTCAGATTTTAAGTCAATATGCAAATCCTGAGTATGTAGAAA
 561 ATTAAATGAGCTTTACAAATCGATGCACTAGCTTCAAGATAAAATATTATCTTTGAGCTGGGCGCAGTGGCTCAAGCCTG
 641 TAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAA
 721 GCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGG
 801 CAGGAGAGTGGCGTGAACCCAGGAGGTGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGA
 881 GCGAGACTCTGTCTCAAAAAAAAAAATAATTATCTCTGAGAGAAAGCTACTGCAGAAATCGCCTTCAGTCACCATTTCAT
 961 TTATTTGTTCACAGGTATTTATGAAGAGCCTGTGTTTTCTTTTAGGTGAAAATGCTGGAGTTTTAAAACAGTGTTGAGAA
1041 AAGAAACAAAGTACATACAGTTTACAAGCAAACTGTAACATAAGGAATGCAAACAGTTTCTTCCTATTAGAGTTACTCAT
1121 TGATTTTAGTTTTTTGTACATTTGTTACAAGCCTCAGATTGTTTTACTCTGAATCAATTGAAAGTGCCCTCAGCTAGCCA
1201 TTTACAATTCCCATGGAAGCCTATGTAGCTACATACATACAATTGCAATTTGCTCGGGATAGCTCTTTAATAAATTCATT
1281 TGATAATGATTTTTGCTTAGAAGAACAGAAGTCTTGTGTTCTCACTTCCCTGAGGATGCTCAGAGGAGCACAAACCCATA
1361 AAACTGAGGAATCCTCTCTTAAATGGATCTAAATTCACATTAAGTGCTGAGTTTTAACTTTCAAAATGACTGACAATGGC
1441 CTTCTGCTTTCTCCTCTACATAAGCCTCGGGACATGACTCACATTTCTTTTCTTTTAATGAGAAATACAATTCAGAATCT
1521 TCATAAATGCTTTCATACGGTTTTAAACTTTAATAACTTGGAATGTAGGCAGTATAGAAAAAAATCTAAGTAGCATTTTT
1601 CATAGTATTAAAGTGAGAGTGGCTGGGCACGATGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCAGGTGGA
1681 TCACCTGAGGTCAGGAGTTCCAGACCAGCCTGACCAATATGGTGAAACCCTGTCTCTACTAAAATTACAAAAATTAGCTG
1761 GGAACTGTGGCATGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGAT
1841 TGCGGTGAGCCGAGATCGCGCCACTGCATTCCAACCTGAGTGACAGAGCGAGACTCTGTCTCAAAAAAATAAAGTCAGGG
1921 TGACTAAGGAAAACCAGCAATTTTATGACACTGTCCTTGAATCTGACTGTCTTTTCCCAATGTAGTTGGTTCCCCACTTG
2001 GAAATCATTTTTTAAAGTAAGCTACATTAGCACATCAACGTTTTAAGTCTGAAAAAATACTTCATTTTCAAATTCATGTC
2081 ATTCAAGAGTCTATGTTGTAAATGGCATTTAAAAGCAAATGTGTTACCTGCTTCAAATCATTTATGGATATAGGCAAGGT
2161 GTAATTACATATTCTCTGTGTGGTTGTATATATTTTTGTAATGTAGGCTCACTACATTACACAGCTCTATATGATAGTCT
2241 TATTTTATCTTTTTTTTTTTTTAATGAAATGGGGTCTCACTATGTTGCTCAGACTGGTCTTAAACTCTTGGACTCAAGCA
2321 ATCCTCCCACCTTGGCCTCCCAAACTGAGCCACTGCACCCGGCCTCTGGTAGTCTTATTTTAAAAAAAGTAAGTCTGGGC
2401 TGGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCTAGGCGGGCAGATCATGAGGTCAGGAGATCGAGAC
2481 CATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAGTACAAAAAATTAGCCGGGCGTGGTGGCAGGCGTCTGTAGT
2561 TCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACACCAC
2641 TGCACTCAAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGTCTGACAAACTCTGTATCACTACTGT
2721 AGACAAGGAAAATGGTGTCATGGAACTGAATATCTTGGTCATGAGAAGAAACCACAGAGTTCATGACTAGAAACATGTAC
2801 TGTATTCAAATTTTAATAAGCTACTATCTTGGCTTTTAAAGTTGTTTTTTTTTTTGTTTTTGTTTTATTTTTTAAGACAG
2881 AATCTCGCTCTGTCACCCAGGCTGGAGTGTGGTGGTGCAATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGA
2961 TTCTCCTTCCTCAGCCTCCCCAGTAGCTGGGACTACAGGCATGTGCCACCATGCATGGCTAATTTTTTGTATTTTTAGTA
3041 GAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTTCTCACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTG
3121 CCGGGATTACAGGCGTGAGCCACTGTGCCCAGCCAGCTTTTAAAGTTTTAAAAAGGATTTGTTCAGACATGGAATATATT
3201 TGTGTATATTACTTGTGTGCTGTACACACAGAGGAAATGTATGTTTGTCATGTATGAAGAATGGCTTCAGTTTCTCTGTA
3281 ATTAATTTGTAATTATAATAATAAAACTTAGCTTCTCATCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuUAGGGUA---GGGGUCCUUGGGg 5'
            | |||||    |: |||||:|| 
Target 5' caAACCCATAAAACTGAGGAATCCt 3'
1351 - 1375 144.00 -23.10
2
miRNA  3' uuuAGGGUAGGGGU-CCUUGGGg 5'
             | | ||:|||| |||| || 
Target 5' attTACAATTCCCATGGAAGCCt 3'
1200 - 1222 135.00 -18.60
3
miRNA  3' uuuaggguaggggucCUUGGGg 5'
                         |||||| 
Target 5' gcaggagagtggcgtGAACCCa 3'
800 - 821 120.00 -12.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30531309 5 COSMIC
COSN30169545 98 COSMIC
COSN31542351 153 COSMIC
COSN7164001 218 COSMIC
COSN24758220 390 COSMIC
COSN30291989 568 COSMIC
COSN21347816 582 COSMIC
COSN5415525 793 COSMIC
COSN22835937 1152 COSMIC
COSN23149442 1578 COSMIC
COSN24794866 1698 COSMIC
COSN15829227 1899 COSMIC
COSN4768831 1995 COSMIC
COSN27190616 2302 COSMIC
COSN23602689 2346 COSMIC
COSN21135560 2465 COSMIC
COSN28952053 2678 COSMIC
COSN27609429 2855 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs771743905 3 dbSNP
rs760015889 7 dbSNP
rs376413444 16 dbSNP
rs774898851 17 dbSNP
rs1165222924 18 dbSNP
rs1473325388 24 dbSNP
rs1338188758 36 dbSNP
rs775609529 38 dbSNP
rs1383030823 40 dbSNP
rs771281387 40 dbSNP
rs763381834 44 dbSNP
rs776093966 45 dbSNP
rs1320233290 46 dbSNP
rs1404055058 55 dbSNP
rs953281022 63 dbSNP
rs1261823114 65 dbSNP
rs190347094 68 dbSNP
rs1294850249 74 dbSNP
rs1244998037 78 dbSNP
rs1461841863 88 dbSNP
rs1183157778 89 dbSNP
rs1254338143 94 dbSNP
rs1420647610 97 dbSNP
rs1439406249 113 dbSNP
rs997396296 117 dbSNP
rs1363135838 121 dbSNP
rs11557694 122 dbSNP
rs973743639 124 dbSNP
rs11557695 128 dbSNP
rs1319424632 133 dbSNP
rs1406114400 135 dbSNP
rs1172069902 139 dbSNP
rs1467625867 148 dbSNP
rs1427759626 149 dbSNP
rs1176202720 150 dbSNP
rs761847652 150 dbSNP
rs1393491956 158 dbSNP
rs560716944 180 dbSNP
rs529789154 182 dbSNP
rs1427544988 184 dbSNP
rs1175689222 186 dbSNP
rs1227037304 191 dbSNP
rs1265552681 193 dbSNP
rs1324285295 194 dbSNP
rs759831849 196 dbSNP
rs963210273 198 dbSNP
rs1254469802 201 dbSNP
rs1481769278 203 dbSNP
rs778272877 204 dbSNP
rs1406444580 207 dbSNP
rs1249510370 209 dbSNP
rs1004298434 221 dbSNP
rs575024005 224 dbSNP
rs943245524 225 dbSNP
rs1479823422 234 dbSNP
rs559460753 235 dbSNP
rs911233941 242 dbSNP
rs1355902504 244 dbSNP
rs756732528 245 dbSNP
rs1297270868 250 dbSNP
rs1370273382 258 dbSNP
rs753433581 267 dbSNP
rs554925320 269 dbSNP
rs1408388310 272 dbSNP
rs1048357110 279 dbSNP
rs951476978 286 dbSNP
rs1218696007 289 dbSNP
rs1299334295 293 dbSNP
rs1035006013 295 dbSNP
rs1250982906 312 dbSNP
rs1003568419 316 dbSNP
rs1224534360 317 dbSNP
rs1261131280 321 dbSNP
rs1222675786 333 dbSNP
rs1312494121 340 dbSNP
rs1188921786 347 dbSNP
rs777360476 356 dbSNP
rs918700223 361 dbSNP
rs1428604057 372 dbSNP
rs185104080 373 dbSNP
rs1372049677 381 dbSNP
rs148232523 384 dbSNP
rs1305389768 385 dbSNP
rs80031868 389 dbSNP
rs63280960 391 dbSNP
rs753672665 391 dbSNP
rs1448305116 397 dbSNP
rs367685171 401 dbSNP
rs11298787 402 dbSNP
rs1364098503 402 dbSNP
rs1436339870 402 dbSNP
rs397856706 402 dbSNP
rs1215247962 404 dbSNP
rs1297139059 407 dbSNP
rs1340378872 409 dbSNP
rs1404546056 411 dbSNP
rs557178318 413 dbSNP
rs1292285021 418 dbSNP
rs374148410 420 dbSNP
rs1219207969 421 dbSNP
rs538549332 428 dbSNP
rs147153384 456 dbSNP
rs1185486049 457 dbSNP
rs1032578700 458 dbSNP
rs1446123567 461 dbSNP
rs1418699033 466 dbSNP
rs572697043 469 dbSNP
rs1386199929 478 dbSNP
rs979123538 481 dbSNP
rs1405155206 482 dbSNP
rs1163210600 487 dbSNP
rs966362186 489 dbSNP
rs1051357143 490 dbSNP
rs1020753247 503 dbSNP
rs931623800 504 dbSNP
rs1454749309 505 dbSNP
rs1381097483 524 dbSNP
rs1180619908 537 dbSNP
rs755922756 538 dbSNP
rs771132050 544 dbSNP
rs901682401 550 dbSNP
rs1017825835 553 dbSNP
rs1241209670 555 dbSNP
rs1007492960 556 dbSNP
rs1317496291 566 dbSNP
rs763230727 572 dbSNP
rs1245623032 576 dbSNP
rs887718264 578 dbSNP
rs143946370 581 dbSNP
rs1242151423 582 dbSNP
rs907694094 597 dbSNP
rs1316003192 601 dbSNP
rs1309450339 602 dbSNP
rs1241704616 605 dbSNP
rs1379927784 607 dbSNP
rs1401841570 610 dbSNP
rs1159118995 611 dbSNP
rs9898225 611 dbSNP
rs1470997574 612 dbSNP
rs951426365 623 dbSNP
rs867773232 624 dbSNP
rs1035080346 626 dbSNP
rs897123431 630 dbSNP
rs1037126853 635 dbSNP
rs1287508531 662 dbSNP
rs949471376 666 dbSNP
rs566995625 668 dbSNP
rs969342889 669 dbSNP
rs577387518 671 dbSNP
rs550666459 677 dbSNP
rs1324984882 678 dbSNP
rs1160619017 680 dbSNP
rs193292287 681 dbSNP
rs1422881401 683 dbSNP
rs557547222 687 dbSNP
rs1024058035 689 dbSNP
rs991421574 693 dbSNP
rs938150189 694 dbSNP
rs1387303425 696 dbSNP
rs1234923254 698 dbSNP
rs925562788 701 dbSNP
rs894082096 702 dbSNP
rs979681235 711 dbSNP
rs1410480070 713 dbSNP
rs767512715 714 dbSNP
rs1177302854 721 dbSNP
rs371896334 724 dbSNP
rs1412941273 731 dbSNP
rs571225976 739 dbSNP
rs565442162 745 dbSNP
rs1354840551 748 dbSNP
rs759381693 752 dbSNP
rs552594687 753 dbSNP
rs1223571064 757 dbSNP
rs1273775771 758 dbSNP
rs534397568 759 dbSNP
rs1342304277 764 dbSNP
rs751459789 765 dbSNP
rs1017335540 768 dbSNP
rs532899189 769 dbSNP
rs1286359765 775 dbSNP
rs890639746 782 dbSNP
rs1490994374 783 dbSNP
rs1218337946 786 dbSNP
rs1200236574 789 dbSNP
rs1182034782 796 dbSNP
rs1169804072 804 dbSNP
rs887603632 806 dbSNP
rs1027567887 807 dbSNP
rs1367339877 808 dbSNP
rs993341221 809 dbSNP
rs188766765 812 dbSNP
rs1322841375 813 dbSNP
rs931738292 830 dbSNP
rs1244819904 835 dbSNP
rs368510640 837 dbSNP
rs1270393933 844 dbSNP
rs1341077732 845 dbSNP
rs1037417557 850 dbSNP
rs1342813795 851 dbSNP
rs949396301 852 dbSNP
rs565465474 853 dbSNP
rs1037808313 864 dbSNP
rs941946956 868 dbSNP
rs907807095 874 dbSNP
rs1341504075 875 dbSNP
rs1248857442 880 dbSNP
rs868671017 881 dbSNP
rs1449138131 882 dbSNP
rs896594176 883 dbSNP
rs530337738 888 dbSNP
rs928460075 892 dbSNP
rs561187969 894 dbSNP
rs78988176 896 dbSNP
rs1403299210 901 dbSNP
rs544699522 904 dbSNP
rs1162518655 905 dbSNP
rs1163943617 906 dbSNP
rs1044007312 907 dbSNP
rs969499806 907 dbSNP
rs989915389 907 dbSNP
rs575502306 908 dbSNP
rs958295055 911 dbSNP
rs1432392858 920 dbSNP
rs945579892 931 dbSNP
rs1031645922 932 dbSNP
rs1246062007 933 dbSNP
rs1265366249 936 dbSNP
rs1354911283 937 dbSNP
rs913584956 941 dbSNP
rs149466536 948 dbSNP
rs1268796673 951 dbSNP
rs185502966 953 dbSNP
rs1186835625 958 dbSNP
rs999742513 966 dbSNP
rs1424159117 989 dbSNP
rs1263591116 991 dbSNP
rs1186631940 1000 dbSNP
rs1030497650 1004 dbSNP
rs890586901 1004 dbSNP
rs976175586 1025 dbSNP
rs1159861404 1026 dbSNP
rs771771947 1030 dbSNP
rs1489732403 1039 dbSNP
rs1266178829 1051 dbSNP
rs1209915167 1058 dbSNP
rs1455202085 1060 dbSNP
rs137880911 1066 dbSNP
rs548566166 1068 dbSNP
rs1396942531 1079 dbSNP
rs1250180519 1085 dbSNP
rs985895491 1088 dbSNP
rs951889167 1101 dbSNP
rs1006277355 1109 dbSNP
rs886120096 1113 dbSNP
rs1206964615 1116 dbSNP
rs1403453834 1122 dbSNP
rs1483731695 1136 dbSNP
rs1200119221 1139 dbSNP
rs1047644782 1147 dbSNP
rs1420661394 1148 dbSNP
rs535474339 1169 dbSNP
rs928448504 1171 dbSNP
rs1471321664 1172 dbSNP
rs993395131 1178 dbSNP
rs1044284284 1179 dbSNP
rs948103519 1189 dbSNP
rs1300747713 1199 dbSNP
rs774737592 1204 dbSNP
rs748199676 1207 dbSNP
rs1309156437 1212 dbSNP
rs1350482616 1220 dbSNP
rs191467333 1223 dbSNP
rs1312883805 1224 dbSNP
rs989595352 1240 dbSNP
rs958247842 1243 dbSNP
rs1250946888 1247 dbSNP
rs1217690192 1249 dbSNP
rs1201529896 1253 dbSNP
rs923970516 1255 dbSNP
rs147119418 1256 dbSNP
rs1374490300 1258 dbSNP
rs1030445210 1263 dbSNP
rs1309074898 1277 dbSNP
rs1424190691 1291 dbSNP
rs1370362741 1297 dbSNP
rs777019847 1298 dbSNP
rs867851370 1299 dbSNP
rs879681947 1303 dbSNP
rs1295809116 1308 dbSNP
rs1479294538 1311 dbSNP
rs1386343152 1315 dbSNP
rs1299460880 1317 dbSNP
rs1376728346 1325 dbSNP
rs1228839457 1334 dbSNP
rs1273589602 1336 dbSNP
rs1339840135 1350 dbSNP
rs764393013 1351 dbSNP
rs1224542003 1354 dbSNP
rs896485576 1358 dbSNP
rs1487863953 1361 dbSNP
rs1005976185 1367 dbSNP
rs1189015036 1367 dbSNP
rs761164209 1371 dbSNP
rs1449652756 1381 dbSNP
rs1002257128 1385 dbSNP
rs904037038 1391 dbSNP
rs1167612205 1395 dbSNP
rs1247762384 1395 dbSNP
rs1198621236 1401 dbSNP
rs1458633188 1411 dbSNP
rs1167514032 1422 dbSNP
rs1351043028 1422 dbSNP
rs186659952 1422 dbSNP
rs1291910487 1432 dbSNP
rs945511341 1433 dbSNP
rs914169720 1434 dbSNP
rs1436036593 1456 dbSNP
rs1040622688 1468 dbSNP
rs772690311 1469 dbSNP
rs944410059 1471 dbSNP
rs1275735743 1476 dbSNP
rs1290495419 1482 dbSNP
rs910180426 1487 dbSNP
rs573790545 1496 dbSNP
rs543271095 1497 dbSNP
rs35494882 1499 dbSNP
rs1219315043 1500 dbSNP
rs985855789 1502 dbSNP
rs1464962911 1505 dbSNP
rs35000152 1506 dbSNP
rs1044231388 1508 dbSNP
rs951775159 1530 dbSNP
rs772149436 1531 dbSNP
rs948533913 1533 dbSNP
rs914422878 1535 dbSNP
rs1054243589 1538 dbSNP
rs920325385 1539 dbSNP
rs746372038 1540 dbSNP
rs971899175 1541 dbSNP
rs1447557122 1552 dbSNP
rs556735157 1553 dbSNP
rs1163329884 1556 dbSNP
rs1390840249 1563 dbSNP
rs774850343 1565 dbSNP
rs936811414 1573 dbSNP
rs1320124990 1584 dbSNP
rs755201402 1585 dbSNP
rs72811100 1593 dbSNP
rs1284614318 1603 dbSNP
rs1378216290 1610 dbSNP
rs1226474956 1611 dbSNP
rs34691119 1615 dbSNP
rs1468089661 1617 dbSNP
rs1401226545 1618 dbSNP
rs1265817529 1619 dbSNP
rs1205268831 1628 dbSNP
rs748782955 1630 dbSNP
rs961001174 1631 dbSNP
rs1033659205 1633 dbSNP
rs1361653482 1636 dbSNP
rs1177475782 1639 dbSNP
rs1324565090 1640 dbSNP
rs974979469 1641 dbSNP
rs182764282 1642 dbSNP
rs903964714 1650 dbSNP
rs539319270 1668 dbSNP
rs1414909425 1669 dbSNP
rs567139790 1669 dbSNP
rs1009773609 1672 dbSNP
rs1158568971 1693 dbSNP
rs1409999418 1694 dbSNP
rs1416345900 1709 dbSNP
rs1335114235 1712 dbSNP
rs1358304133 1716 dbSNP
rs548046608 1717 dbSNP
rs950529212 1719 dbSNP
rs7224742 1724 dbSNP
rs944947979 1728 dbSNP
rs1227221199 1732 dbSNP
rs530276167 1733 dbSNP
rs1002561352 1740 dbSNP
rs888798219 1748 dbSNP
rs1050074414 1766 dbSNP
rs1277490878 1768 dbSNP
rs190169921 1774 dbSNP
rs1202494046 1786 dbSNP
rs1442191734 1795 dbSNP
rs1209260958 1799 dbSNP
rs749823955 1803 dbSNP
rs1483693924 1808 dbSNP
rs906885095 1811 dbSNP
rs780979869 1815 dbSNP
rs188803175 1817 dbSNP
rs531072757 1818 dbSNP
rs920377791 1822 dbSNP
rs971782993 1825 dbSNP
rs940519378 1827 dbSNP
rs917052923 1828 dbSNP
rs993169733 1832 dbSNP
rs1370963496 1839 dbSNP
rs754735891 1840 dbSNP
rs1450314714 1843 dbSNP
rs1339703118 1844 dbSNP
rs1332262873 1845 dbSNP
rs1436643454 1850 dbSNP
rs565119046 1851 dbSNP
rs751482837 1857 dbSNP
rs968034562 1858 dbSNP
rs1277147006 1860 dbSNP
rs766295499 1868 dbSNP
rs1205009410 1871 dbSNP
rs1157664885 1875 dbSNP
rs1009615447 1876 dbSNP
rs1318315022 1879 dbSNP
rs1246324200 1880 dbSNP
rs1452758591 1883 dbSNP
rs545028411 1886 dbSNP
rs892635661 1889 dbSNP
rs1472771266 1890 dbSNP
rs1166623353 1897 dbSNP
rs936739737 1898 dbSNP
rs1405408674 1900 dbSNP
rs1322358075 1901 dbSNP
rs902631472 1914 dbSNP
rs1436772566 1916 dbSNP
rs757333321 1918 dbSNP
rs1366367419 1924 dbSNP
rs1190053740 1928 dbSNP
rs1042470630 1937 dbSNP
rs1285646770 1941 dbSNP
rs1250097517 1943 dbSNP
rs1217616291 1945 dbSNP
rs74535326 1946 dbSNP
rs753941155 1952 dbSNP
rs1467199303 1953 dbSNP
rs1289650301 1963 dbSNP
rs1227759574 1964 dbSNP
rs868610611 1971 dbSNP
rs777309505 1975 dbSNP
rs975359954 1976 dbSNP
rs1284653389 1979 dbSNP
rs1450029043 1988 dbSNP
rs1248942512 1996 dbSNP
rs1050627845 2015 dbSNP
rs1297245024 2016 dbSNP
rs930350199 2032 dbSNP
rs1400205513 2033 dbSNP
rs898793540 2039 dbSNP
rs1036076341 2040 dbSNP
rs985004565 2043 dbSNP
rs1458414228 2045 dbSNP
rs1161168378 2051 dbSNP
rs950499068 2058 dbSNP
rs755606188 2064 dbSNP
rs1404177065 2078 dbSNP
rs940425392 2080 dbSNP
rs917090247 2089 dbSNP
rs1415173018 2090 dbSNP
rs1434798306 2090 dbSNP
rs1293820669 2093 dbSNP
rs1342670089 2096 dbSNP
rs1246085393 2105 dbSNP
rs992700039 2121 dbSNP
rs1332749178 2139 dbSNP
rs1474669442 2150 dbSNP
rs1210743378 2152 dbSNP
rs572230603 2154 dbSNP
rs981198892 2158 dbSNP
rs1262877345 2161 dbSNP
rs1203631876 2169 dbSNP
rs559181326 2171 dbSNP
rs752156341 2177 dbSNP
rs778084689 2178 dbSNP
rs1442790859 2191 dbSNP
rs1186739148 2193 dbSNP
rs1194710189 2202 dbSNP
rs937159741 2204 dbSNP
rs927230388 2215 dbSNP
rs1159326084 2230 dbSNP
rs544163422 2233 dbSNP
rs1022678845 2237 dbSNP
rs1489405267 2241 dbSNP
rs978673317 2244 dbSNP
rs968044363 2250 dbSNP
rs1220948921 2256 dbSNP
rs75849385 2262 dbSNP
rs1397033922 2263 dbSNP
rs879538359 2263 dbSNP
rs1322394629 2271 dbSNP
rs1290594711 2273 dbSNP
rs1022271437 2274 dbSNP
rs1230276968 2275 dbSNP
rs1289010326 2282 dbSNP
rs988649545 2282 dbSNP
rs1237067867 2284 dbSNP
rs956834882 2285 dbSNP
rs1019432709 2288 dbSNP
rs998676989 2299 dbSNP
rs1199705716 2305 dbSNP
rs1277355399 2308 dbSNP
rs1255296498 2332 dbSNP
rs183405646 2342 dbSNP
rs1182851442 2345 dbSNP
rs1341997851 2346 dbSNP
rs889279177 2354 dbSNP
rs1029201784 2356 dbSNP
rs995014709 2360 dbSNP
rs898846009 2361 dbSNP
rs1035966182 2364 dbSNP
rs1466846564 2374 dbSNP
rs1004939564 2381 dbSNP
rs1173458607 2382 dbSNP
rs1374047181 2388 dbSNP
rs1161788904 2389 dbSNP
rs1349953170 2391 dbSNP
rs1309175811 2395 dbSNP
rs1372622962 2399 dbSNP
rs1326157578 2404 dbSNP
rs1389817181 2405 dbSNP
rs1303640911 2407 dbSNP
rs933410751 2413 dbSNP
rs1232842557 2416 dbSNP
rs1344045995 2417 dbSNP
rs191629828 2419 dbSNP
rs1057277765 2422 dbSNP
rs1221809496 2426 dbSNP
rs1039067115 2442 dbSNP
rs372780171 2446 dbSNP
rs937231191 2448 dbSNP
rs368771943 2450 dbSNP
rs55833140 2452 dbSNP
rs947258681 2457 dbSNP
rs913134333 2458 dbSNP
rs988187144 2459 dbSNP
rs543138348 2460 dbSNP
rs985462925 2462 dbSNP
rs1169765810 2465 dbSNP
rs929428777 2475 dbSNP
rs912019204 2476 dbSNP
rs1295318180 2490 dbSNP
rs577698160 2495 dbSNP
rs1368438590 2498 dbSNP
rs1440361351 2506 dbSNP
rs1301544232 2507 dbSNP
rs577958562 2507 dbSNP
rs1367078947 2510 dbSNP
rs987920217 2520 dbSNP
rs1294730260 2529 dbSNP
rs557912152 2533 dbSNP
rs953553602 2535 dbSNP
rs534561211 2536 dbSNP
rs553816782 2539 dbSNP
rs565685763 2540 dbSNP
rs1249567055 2542 dbSNP
rs1451687252 2545 dbSNP
rs553654098 2548 dbSNP
rs1419282490 2551 dbSNP
rs1199053500 2552 dbSNP
rs536999044 2553 dbSNP
rs1424188584 2556 dbSNP
rs567748994 2561 dbSNP
rs991196748 2562 dbSNP
rs1056885246 2566 dbSNP
rs1001251241 2571 dbSNP
rs1359642853 2572 dbSNP
rs1367750385 2577 dbSNP
rs1313357317 2582 dbSNP
rs1333505039 2586 dbSNP
rs905707754 2592 dbSNP
rs1032900490 2593 dbSNP
rs1042934730 2595 dbSNP
rs1443884203 2596 dbSNP
rs947190068 2602 dbSNP
rs1207753973 2603 dbSNP
rs913185176 2604 dbSNP
rs1053441068 2606 dbSNP
rs1184098393 2607 dbSNP
rs935347183 2608 dbSNP
rs1332619155 2610 dbSNP
rs911845890 2611 dbSNP
rs1162938061 2617 dbSNP
rs1414309069 2622 dbSNP
rs1457929020 2623 dbSNP
rs866702084 2626 dbSNP
rs1343153448 2628 dbSNP
rs1357758340 2634 dbSNP
rs1175687855 2635 dbSNP
rs1434007302 2636 dbSNP
rs1303352725 2640 dbSNP
rs1029489174 2641 dbSNP
rs376168866 2648 dbSNP
rs551190375 2650 dbSNP
rs1289641803 2653 dbSNP
rs1329246435 2656 dbSNP
rs1439102686 2657 dbSNP
rs1237553093 2658 dbSNP
rs1315502985 2659 dbSNP
rs1188038564 2665 dbSNP
rs1179174100 2666 dbSNP
rs530886755 2673 dbSNP
rs1039427994 2674 dbSNP
rs1209098468 2676 dbSNP
rs1312438719 2677 dbSNP
rs1280216850 2678 dbSNP
rs562201615 2688 dbSNP
rs987584166 2692 dbSNP
rs953437580 2693 dbSNP
rs1415927180 2694 dbSNP
rs1474335153 2694 dbSNP
rs1374663436 2696 dbSNP
rs1007533821 2708 dbSNP
rs1309793950 2709 dbSNP
rs1350555405 2716 dbSNP
rs1440927446 2719 dbSNP
rs887785602 2723 dbSNP
rs1375518295 2725 dbSNP
rs7214211 2732 dbSNP
rs1219469789 2737 dbSNP
rs929545059 2741 dbSNP
rs1377563582 2754 dbSNP
rs1347614506 2759 dbSNP
rs973573682 2760 dbSNP
rs748304267 2771 dbSNP
rs1277461664 2772 dbSNP
rs919419375 2773 dbSNP
rs1375598610 2776 dbSNP
rs1045961693 2777 dbSNP
rs1466812326 2779 dbSNP
rs1361131505 2783 dbSNP
rs963507475 2790 dbSNP
rs949766102 2793 dbSNP
rs1419246823 2797 dbSNP
rs1394192698 2800 dbSNP
rs1432692543 2801 dbSNP
rs1170409739 2802 dbSNP
rs1371133015 2803 dbSNP
rs1015217320 2807 dbSNP
rs551469750 2811 dbSNP
rs1179232790 2814 dbSNP
rs1351145834 2827 dbSNP
rs377668011 2839 dbSNP
rs959742618 2844 dbSNP
rs925612984 2845 dbSNP
rs977306766 2848 dbSNP
rs1035735053 2850 dbSNP
rs1300401952 2851 dbSNP
rs1340741972 2852 dbSNP
rs1001303716 2853 dbSNP
rs371452830 2855 dbSNP
rs113366274 2856 dbSNP
rs1252682833 2856 dbSNP
rs1453419174 2856 dbSNP
rs201726591 2856 dbSNP
rs1238915644 2857 dbSNP
rs905639019 2858 dbSNP
rs1475019098 2860 dbSNP
rs373732002 2862 dbSNP
rs1352408806 2863 dbSNP
rs559370047 2865 dbSNP
rs1392186296 2866 dbSNP
rs1051572654 2867 dbSNP
rs1405499311 2867 dbSNP
rs1286140754 2868 dbSNP
rs1391884359 2877 dbSNP
rs1241634977 2881 dbSNP
rs1320448130 2882 dbSNP
rs1312565418 2886 dbSNP
rs1322925420 2887 dbSNP
rs1327397569 2888 dbSNP
rs997998306 2891 dbSNP
rs963863705 2892 dbSNP
rs1227270326 2895 dbSNP
rs1268996677 2903 dbSNP
rs1021376802 2904 dbSNP
rs1381789577 2913 dbSNP
rs1234022235 2914 dbSNP
rs1296625846 2920 dbSNP
rs1399607580 2924 dbSNP
rs1017658109 2928 dbSNP
rs1467274353 2928 dbSNP
rs1160559909 2929 dbSNP
rs1008062631 2937 dbSNP
rs1011453528 2942 dbSNP
rs1370189572 2950 dbSNP
rs1366657693 2952 dbSNP
rs755539955 2965 dbSNP
rs1049566462 2974 dbSNP
rs1163643891 2975 dbSNP
rs891583521 2979 dbSNP
rs541965025 2987 dbSNP
rs1158801796 2991 dbSNP
rs542506108 2997 dbSNP
rs760963389 3009 dbSNP
rs775794075 3012 dbSNP
rs1419737179 3013 dbSNP
rs767773882 3014 dbSNP
rs774742316 3015 dbSNP
rs1191182115 3026 dbSNP
rs1292705086 3029 dbSNP
rs1332768661 3039 dbSNP
rs1487777863 3040 dbSNP
rs187209957 3041 dbSNP
rs771445919 3045 dbSNP
rs1218182485 3046 dbSNP
rs1487212350 3047 dbSNP
rs950171095 3056 dbSNP
rs748834793 3057 dbSNP
rs1323928288 3060 dbSNP
rs772698742 3062 dbSNP
rs563320021 3063 dbSNP
rs1055510161 3069 dbSNP
rs1362906644 3070 dbSNP
rs1218361761 3072 dbSNP
rs1453475965 3073 dbSNP
rs1157146299 3075 dbSNP
rs922055506 3076 dbSNP
rs1435808050 3082 dbSNP
rs1341363062 3085 dbSNP
rs1307938933 3086 dbSNP
rs769237114 3088 dbSNP
rs1237183215 3090 dbSNP
rs973457876 3097 dbSNP
rs1385216622 3098 dbSNP
rs1348342836 3101 dbSNP
rs1390071543 3102 dbSNP
rs1292922003 3105 dbSNP
rs373685687 3106 dbSNP
rs925632880 3107 dbSNP
rs577774808 3108 dbSNP
rs141043455 3109 dbSNP
rs908003329 3113 dbSNP
rs370230778 3122 dbSNP
rs751919775 3123 dbSNP
rs922499119 3124 dbSNP
rs572065553 3130 dbSNP
rs1423970871 3132 dbSNP
rs1194876960 3133 dbSNP
rs1490828717 3134 dbSNP
rs555441202 3135 dbSNP
rs1266025601 3137 dbSNP
rs1209863103 3141 dbSNP
rs151074518 3142 dbSNP
rs1305972836 3143 dbSNP
rs1256639037 3153 dbSNP
rs1018525468 3159 dbSNP
rs1233344954 3176 dbSNP
rs766770982 3181 dbSNP
rs979799075 3188 dbSNP
rs1221112066 3197 dbSNP
rs1198421283 3206 dbSNP
rs1344169442 3207 dbSNP
rs1319014010 3208 dbSNP
rs1280403540 3214 dbSNP
rs181763481 3215 dbSNP
rs1479378697 3225 dbSNP
rs557390720 3229 dbSNP
rs1302114371 3240 dbSNP
rs1388527682 3247 dbSNP
rs1027640276 3249 dbSNP
rs1193455189 3251 dbSNP
rs537612091 3268 dbSNP
rs993476470 3282 dbSNP
rs1430771266 3288 dbSNP
rs879712793 3304 dbSNP
rs1464969820 3305 dbSNP
rs1400721151 3320 dbSNP
rs1460590863 3323 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuuaggguagggguCCUUGGGg 5'
                        |||:|:: 
Target 5' ------caggagguGGAGCUUg 3'
1 - 16
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000577809.1 | 3UTR | CAGGAGGUGGAGCUUGCAGUGAGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE15076 Monocyte-derived dendritic cells -0.943 6.9e-5 -0.483 9.4e-2 9 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.596 2.8e-3 0.598 2.7e-3 20 Click to see details
GSE28544 Breast cancer 0.517 4.8e-3 0.486 8.0e-3 24 Click to see details
GSE21687 Ependynoma primary tumors -0.216 4.3e-2 -0.211 4.7e-2 64 Click to see details
GSE21032 Prostate cancer -0.162 7.2e-2 -0.146 9.4e-2 83 Click to see details
GSE42095 Differentiated embryonic stem cells -0.27 1.1e-1 -0.138 2.7e-1 23 Click to see details
GSE17498 Multiple myeloma -0.191 1.2e-1 -0.019 4.5e-1 40 Click to see details
GSE38226 Liver fibrosis -0.245 1.4e-1 -0.520 7.8e-3 21 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.191 1.8e-1 0.307 6.8e-2 25 Click to see details
GSE19350 CNS germ cell tumors 0.239 2.3e-1 0.173 3.0e-1 12 Click to see details
GSE32688 Pancreatic cancer -0.101 2.9e-1 -0.037 4.2e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells 0.072 3.7e-1 0.040 4.3e-1 24 Click to see details
GSE19783 ER- ER- breast cancer 0.032 3.9e-1 0.023 4.2e-1 79 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.046 4.1e-1 0.099 3.2e-1 25 Click to see details
GSE19783 ER+ ER+ breast cancer -0.048 4.2e-1 0.131 2.9e-1 20 Click to see details
GSE19536 Breast cancer -0.015 4.4e-1 0.022 4.1e-1 100 Click to see details
GSE28260 Renal cortex and medulla -0.001 5.0e-1 0.088 3.9e-1 13 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BLCA -0.634 0 -0.574 0.01 16 Click to see details
ESCA -0.566 0.03 -0.491 0.06 11 Click to see details
KICH -0.349 0.07 -0.275 0.12 20 Click to see details
THCA 0.187 0.08 0.138 0.15 59 Click to see details
BRCA -0.142 0.11 -0.161 0.08 78 Click to see details
CESC -0.933 0.12 -1.000 0.5 3 Click to see details
PCPG 0.925 0.12 1.000 0.5 3 Click to see details
STAD -0.178 0.18 -0.028 0.44 28 Click to see details
HNSC -0.137 0.2 -0.096 0.28 40 Click to see details
KIRC 0.097 0.23 0.080 0.27 62 Click to see details
LUSC -0.115 0.25 -0.040 0.41 38 Click to see details
CHOL 0.228 0.29 0.095 0.41 8 Click to see details
PAAD -0.395 0.3 0.000 0.5 4 Click to see details
PRAD -0.124 0.31 -0.247 0.15 19 Click to see details
LUAD -0.151 0.35 -0.050 0.45 9 Click to see details
COAD 0.155 0.36 0.071 0.43 8 Click to see details
UCEC 0.017 0.47 0.067 0.39 19 Click to see details
KIRP 0.003 0.49 -0.032 0.43 32 Click to see details
KIRP 0.003 0.49 -0.032 0.43 32 Click to see details
KIRP 0.003 0.49 -0.032 0.43 32 Click to see details
LIHC 0 0.5 -0.008 0.48 38 Click to see details
131 hsa-miR-23a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038958 ATF1 activating transcription factor 1 1 1
MIRT057661 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT395438 NFKBID NFKB inhibitor delta 2 2
MIRT463884 WNT7B Wnt family member 7B 2 4
MIRT475804 HDGF heparin binding growth factor 2 2
MIRT478528 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT479278 CHD4 chromodomain helicase DNA binding protein 4 2 6
MIRT492564 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT500353 ZNF385A zinc finger protein 385A 2 2
MIRT509788 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511566 HIST3H2BB histone cluster 3 H2B family member b 2 4
MIRT525450 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539558 CNKSR3 CNKSR family member 3 2 4
MIRT540034 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540225 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT540242 RGS17 regulator of G protein signaling 17 2 2
MIRT540871 ZBTB24 zinc finger and BTB domain containing 24 2 2
MIRT559065 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT560685 HIST1H1T histone cluster 1 H1 family member t 2 2
MIRT565593 SLC35G1 solute carrier family 35 member G1 2 2
MIRT565642 SKI SKI proto-oncogene 2 2
MIRT576747 Tmem127 transmembrane protein 127 2 2
MIRT607712 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT615682 NAV2 neuron navigator 2 2 2
MIRT617337 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT617378 FAM227A family with sequence similarity 227 member A 2 2
MIRT620855 SERPING1 serpin family G member 1 2 2
MIRT625112 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625124 NUP93 nucleoporin 93 2 2
MIRT625898 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626016 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626481 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT626573 MED7 mediator complex subunit 7 2 2
MIRT626814 PRR11 proline rich 11 2 2
MIRT628136 HM13 histocompatibility minor 13 2 2
MIRT630771 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT633133 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT636950 APTX aprataxin 2 2
MIRT637802 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT638622 GSR glutathione-disulfide reductase 2 4
MIRT642196 SMAGP small cell adhesion glycoprotein 2 2
MIRT645121 HES2 hes family bHLH transcription factor 2 2 2
MIRT645344 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT646564 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT649243 TRIM65 tripartite motif containing 65 2 2
MIRT651810 USP49 ubiquitin specific peptidase 49 2 2
MIRT652137 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652668 TIMELESS timeless circadian clock 2 2
MIRT655894 NEK9 NIMA related kinase 9 2 2
MIRT656564 LYRM7 LYR motif containing 7 2 2
MIRT657194 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657907 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT660207 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660619 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660826 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT660986 ABHD2 abhydrolase domain containing 2 2 2
MIRT662232 PGBD4 piggyBac transposable element derived 4 2 2
MIRT663691 ZNF347 zinc finger protein 347 2 2
MIRT665577 TUBD1 tubulin delta 1 2 2
MIRT666149 SP2 Sp2 transcription factor 2 2
MIRT666310 SLC22A3 solute carrier family 22 member 3 2 2
MIRT666457 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT667716 KIAA1468 KIAA1468 2 2
MIRT668329 FKBP5 FK506 binding protein 5 2 2
MIRT668370 FBXO47 F-box protein 47 2 2
MIRT669304 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669538 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT671681 ADK adenosine kinase 2 2
MIRT672177 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT673604 HPSE heparanase 2 2
MIRT673749 ZNF333 zinc finger protein 333 2 2
MIRT674807 FAM229B family with sequence similarity 229 member B 2 2
MIRT675286 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675391 SVOP SV2 related protein 2 2
MIRT675788 MED28 mediator complex subunit 28 2 2
MIRT676151 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676499 GJD3 gap junction protein delta 3 2 2
MIRT676621 CSNK1E casein kinase 1 epsilon 2 2
MIRT676644 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT676711 METTL14 methyltransferase like 14 2 2
MIRT676809 SHROOM4 shroom family member 4 2 2
MIRT677036 FOXO3 forkhead box O3 2 2
MIRT677062 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT677086 SMIM15 small integral membrane protein 15 2 2
MIRT677193 MURC caveolae associated protein 4 2 2
MIRT677273 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT677345 POC1A POC1 centriolar protein A 2 2
MIRT677504 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677526 OCIAD2 OCIA domain containing 2 2 2
MIRT677661 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT677727 SSR1 signal sequence receptor subunit 1 2 2
MIRT677803 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT678144 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678376 VTA1 vesicle trafficking 1 2 2
MIRT678708 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT678868 FAM118A family with sequence similarity 118 member A 2 2
MIRT679039 LACTB lactamase beta 2 2
MIRT679081 PURB purine rich element binding protein B 2 2
MIRT679137 SYK spleen associated tyrosine kinase 2 2
MIRT679299 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679741 CABP4 calcium binding protein 4 2 2
MIRT679946 AS3MT arsenite methyltransferase 2 2
MIRT679976 E2F2 E2F transcription factor 2 2 2
MIRT683628 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT683901 PSMB9 proteasome subunit beta 9 2 2
MIRT684172 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684231 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT685403 C1orf158 chromosome 1 open reading frame 158 2 2
MIRT686253 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687513 NCKAP1 NCK associated protein 1 2 2
MIRT688243 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688315 FAM151B family with sequence similarity 151 member B 2 2
MIRT688733 CNDP1 carnosine dipeptidase 1 2 2
MIRT689031 ANGPTL3 angiopoietin like 3 2 2
MIRT698207 TMEM248 transmembrane protein 248 2 2
MIRT699859 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT709954 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT711541 MSH3 mutS homolog 3 2 2
MIRT712077 WDR37 WD repeat domain 37 2 2
MIRT715312 POLR2E RNA polymerase II subunit E 2 2
MIRT715725 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT715748 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT717604 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717875 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718042 NIPAL2 NIPA like domain containing 2 2 2
MIRT718829 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT724037 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 2 2
MIRT733305 TNF tumor necrosis factor 1 0
MIRT734941 HSPA1B heat shock protein family A (Hsp70) member 1B 3 0
MIRT737343 IGF2 insulin like growth factor 2 3 0
MIRT737546 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-23a 1'-Acetoxychavicol acetate (ACA) NULL 119104 Microarray HN4 cell line 24317043 2014 down-regulated
miR-23a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-23a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 up-regulated
miR-23a Enoxacin approved 3229 Quantitative real-time PCR HEK293 cells 18641635 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Quantitative real-time PCR glandular epithelial cells 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR endometrial stromal 19088369 2008 down-regulated
miR-23a Medroxyprogesterone acetate approved 6279 Quantitative real-time PCR glandular epithelial cells 19088369 2008 up-regulated
miR-23a 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 up-regulated
miR-23a Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miR-23a Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-23a Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-23a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-23a 5-Fluorouracil approved 3385 Microarray MCF-7 breast cancer cells 21506117 2011 up-regulated
miR-23a Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-23a Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-23a Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-23a Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 up-regualted
miR-23a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-23a Comfrey NULL 6440495 Microarray rat liver 21370286 2011 up-regulated
miR-23a Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-23a Ethanol NULL 702 Quantitative real-time PCR zebrafish embryos 22298809 2012 down-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 up-regulated
miR-23a Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive Low Breast Cancer cell line (MDA-MB-231)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC-7901)
hsa-mir-23a Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-mir-23a Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-23a Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (OE19)
hsa-mir-23a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-23a Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-mir-23a Cisplatin 5460033 NSC119875 approved sensitive cell line (SGC-7901)
hsa-miR-23a-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-23a-5p Palbociclib 5330286 NSC758247 approved resistant High Breast Cancer cell line (T47D)
hsa-miR-23a-5p Arsenic trioxide 261004 NSC759274 approved sensitive Low Acute Myeloid Leukemia cell line (U937, Kasumi-1, THP-1, Jurkat E6.1, SUP B15)
hsa-miR-23a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-23a-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-23a-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-23a-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-23a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-23a-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-23a-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-23a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-23a-5p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-23a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-23a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-23a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-23a-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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