pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ISCA2   
Synonyms HBLD1, ISA2, MMDS4, c14_5557
Description iron-sulfur cluster assembly 2
Transcript NM_194279   
Expression
Putative miRNA Targets on ISCA2
3'UTR of ISCA2
(miRNA target sites are highlighted)
>ISCA2|NM_194279|3'UTR
   1 TGTGATGACTGGTGACTCTGGGATTGTCACCAGTTGTACCAATTTGAAGAACCTGGAATTAGTAGAATTCTAGAAGTTTA
  81 CTTCTAATCATGTCCCTCTCAATTTTATTTCCCGCAGTCCAGGAGTGTTATGTTTTGCCACTATTATTTTCAGAATGTGA
 161 AGATTTTACTCTTGGCTTAATTTTTCCCTCCACTCAGTGCTAAGGCTGAGCCTCCAGATGCTGTTACCTCAGATTTAATC
 241 ACTGGTTGAAACTCCGTATAATCTGTAGAGCCTCCATGGCTCTAAAATTTGGAATTAACTTCTCTTGCCTTAAGAGCTGC
 321 TTGTACATATGTGGATAGCTATGTATAAAAGCTTCATTTTAAAGAAGGTTCTTATTGTGTTGTGGATCAGGGTCACAGAT
 401 TGGGTAGCTTGGACACCAGTTATTAGAGGATGAGAAAAGTAAATGAAATGTTCTCTTTTTCACTTCACCCTGCCAGAATG
 481 TGCCACTTGACTTATCTTTATTGTCTATGCAACCCATTTGCCACTTCCTGTTTGATAGGACAGATACATTTTACTCTCAT
 561 GCTCGTGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guCUUAGGAACGGACCCAcg 5'
            |::||   | :|||||  
Target 5' caGGGTCACAGATTGGGTag 3'
388 - 407 114.00 -15.90
2
miRNA  3' guCUUAGGAACGGACCCACg 5'
            || |:  |  |||| || 
Target 5' caGATTTAATCACTGGTTGa 3'
230 - 249 114.00 -9.59
3
miRNA  3' guCUUAGGA--AC--GGACCCacg 5'
            ||   ||  ||  :|||||   
Target 5' gtGATGACTGGTGACTCTGGGatt 3'
2 - 25 102.00 -8.42
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26551197 3 COSMIC
COSN31524211 14 COSMIC
COSN8156957 23 COSMIC
COSN30114736 33 COSMIC
COSN30121421 85 COSMIC
COSN30100408 102 COSMIC
COSN31574730 104 COSMIC
COSN30449470 112 COSMIC
COSN28452383 355 COSMIC
COSN24052012 785 COSMIC
COSN24714755 1316 COSMIC
COSN21069685 1409 COSMIC
COSN29196369 1534 COSMIC
COSN8849851 1890 COSMIC
COSN21570327 2013 COSMIC
rs11159086 573 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1337784780 10 dbSNP
rs1445583800 18 dbSNP
rs753086173 19 dbSNP
rs375097936 20 dbSNP
rs778209622 22 dbSNP
rs188369908 23 dbSNP
rs1352205239 28 dbSNP
rs199945088 29 dbSNP
rs748967636 30 dbSNP
rs1010529214 40 dbSNP
rs767982806 41 dbSNP
rs773901879 47 dbSNP
rs1376155600 54 dbSNP
rs1045648475 57 dbSNP
rs906895619 64 dbSNP
rs530597854 69 dbSNP
rs1418464708 74 dbSNP
rs550786426 82 dbSNP
rs1476170340 94 dbSNP
rs955509661 97 dbSNP
rs567621722 99 dbSNP
rs536370863 101 dbSNP
rs1034122241 113 dbSNP
rs546545542 114 dbSNP
rs1259016234 115 dbSNP
rs566538897 116 dbSNP
rs1213600874 122 dbSNP
rs368876854 124 dbSNP
rs1436602141 129 dbSNP
rs962429071 133 dbSNP
rs911434424 144 dbSNP
rs769933767 147 dbSNP
rs995689567 148 dbSNP
rs1353762402 158 dbSNP
rs1341733474 163 dbSNP
rs1291604152 177 dbSNP
rs941648840 187 dbSNP
rs1037363971 189 dbSNP
rs920284164 191 dbSNP
rs951667280 194 dbSNP
rs929053245 196 dbSNP
rs1284265338 201 dbSNP
rs1487928030 205 dbSNP
rs1214341160 208 dbSNP
rs987500761 213 dbSNP
rs1047914152 214 dbSNP
rs906296367 229 dbSNP
rs1187170603 232 dbSNP
rs1003345507 233 dbSNP
rs1366963393 241 dbSNP
rs777963559 243 dbSNP
rs1159224112 247 dbSNP
rs925382612 253 dbSNP
rs749717667 256 dbSNP
rs538690645 257 dbSNP
rs146263066 259 dbSNP
rs1271695604 264 dbSNP
rs562402039 265 dbSNP
rs1335785307 266 dbSNP
rs1295167074 276 dbSNP
rs1022275301 277 dbSNP
rs1372507392 281 dbSNP
rs80341268 282 dbSNP
rs374977004 290 dbSNP
rs1376492685 295 dbSNP
rs1029667464 304 dbSNP
rs112917040 305 dbSNP
rs1461618219 308 dbSNP
rs1396277531 310 dbSNP
rs192324488 318 dbSNP
rs1156309302 319 dbSNP
rs1418062390 320 dbSNP
rs1408075857 333 dbSNP
rs1046088101 336 dbSNP
rs1471453838 338 dbSNP
rs542747136 343 dbSNP
rs937008290 368 dbSNP
rs1469069792 376 dbSNP
rs1275342648 380 dbSNP
rs1213926052 385 dbSNP
rs1055441192 387 dbSNP
rs898257536 390 dbSNP
rs1488486267 392 dbSNP
rs911426203 393 dbSNP
rs552962701 395 dbSNP
rs1279684134 404 dbSNP
rs1368765718 420 dbSNP
rs1302378054 429 dbSNP
rs974755305 436 dbSNP
rs1025390008 451 dbSNP
rs918863994 455 dbSNP
rs928938795 469 dbSNP
rs1237924667 470 dbSNP
rs184010437 472 dbSNP
rs1008384400 473 dbSNP
rs545034232 474 dbSNP
rs1345214978 477 dbSNP
rs1485932059 479 dbSNP
rs1160721594 485 dbSNP
rs1199698635 494 dbSNP
rs1253736149 496 dbSNP
rs1393872294 497 dbSNP
rs1439791286 504 dbSNP
rs1020311790 506 dbSNP
rs1269920951 507 dbSNP
rs1182783872 508 dbSNP
rs565019077 515 dbSNP
rs4903231 531 dbSNP
rs1032263631 534 dbSNP
rs1175543383 538 dbSNP
rs1054949896 543 dbSNP
rs958027259 547 dbSNP
rs894993813 548 dbSNP
rs1349732325 554 dbSNP
rs564630404 557 dbSNP
rs1381282267 563 dbSNP
rs187194521 565 dbSNP
rs1010755332 566 dbSNP
rs1362273700 570 dbSNP
rs11159086 573 dbSNP
rs1392836437 574 dbSNP
rs1374332612 583 dbSNP
rs1331576149 584 dbSNP
rs530096447 598 dbSNP
rs546682321 599 dbSNP
rs1379688067 600 dbSNP
rs1168842868 601 dbSNP
rs1428114164 606 dbSNP
rs1420576544 607 dbSNP
rs566673145 613 dbSNP
rs1029656034 619 dbSNP
rs891203402 635 dbSNP
rs191325423 639 dbSNP
rs1348511209 655 dbSNP
rs1486639275 665 dbSNP
rs1249366992 666 dbSNP
rs1006959487 672 dbSNP
rs1307702873 677 dbSNP
rs1187569596 694 dbSNP
rs1254088730 699 dbSNP
rs1231077730 706 dbSNP
rs552573642 713 dbSNP
rs1055472639 717 dbSNP
rs1415914477 723 dbSNP
rs898203706 728 dbSNP
rs963180012 736 dbSNP
rs930958112 744 dbSNP
rs1196649720 746 dbSNP
rs538315332 748 dbSNP
rs1456578689 752 dbSNP
rs1417221546 757 dbSNP
rs974284154 762 dbSNP
rs1026284179 778 dbSNP
rs1248404105 784 dbSNP
rs1195585304 786 dbSNP
rs951665914 795 dbSNP
rs142827133 799 dbSNP
rs927641909 800 dbSNP
rs1019752827 805 dbSNP
rs554816545 811 dbSNP
rs1375180342 817 dbSNP
rs1234666028 820 dbSNP
rs556260723 826 dbSNP
rs1342773231 828 dbSNP
rs990542977 838 dbSNP
rs916343409 843 dbSNP
rs1391328766 848 dbSNP
rs997092466 859 dbSNP
rs1170354430 874 dbSNP
rs1333844286 879 dbSNP
rs1460040283 883 dbSNP
rs1399132638 885 dbSNP
rs1394102987 892 dbSNP
rs1165733251 896 dbSNP
rs761562908 897 dbSNP
rs1043569213 898 dbSNP
rs1362138837 901 dbSNP
rs958060107 902 dbSNP
rs988140989 904 dbSNP
rs1239751709 915 dbSNP
rs1191559015 918 dbSNP
rs1467750218 927 dbSNP
rs1438464200 928 dbSNP
rs1386209824 929 dbSNP
rs1347844998 933 dbSNP
rs1259664849 942 dbSNP
rs902425495 949 dbSNP
rs1021474744 954 dbSNP
rs1336908240 954 dbSNP
rs1439230443 955 dbSNP
rs1370734588 956 dbSNP
rs747841345 956 dbSNP
rs1382816718 957 dbSNP
rs1388773744 957 dbSNP
rs772813339 959 dbSNP
rs1454222502 962 dbSNP
rs3759745 968 dbSNP
rs981691260 988 dbSNP
rs1051034677 989 dbSNP
rs1253404011 993 dbSNP
rs891150866 996 dbSNP
rs750088935 1019 dbSNP
rs1257113545 1025 dbSNP
rs372014912 1028 dbSNP
rs1018285462 1039 dbSNP
rs1215775083 1041 dbSNP
rs762857803 1044 dbSNP
rs183717244 1046 dbSNP
rs996041928 1060 dbSNP
rs1275832414 1062 dbSNP
rs1235670120 1069 dbSNP
rs1488179569 1075 dbSNP
rs766059794 1087 dbSNP
rs1264511164 1094 dbSNP
rs1362557813 1096 dbSNP
rs919831471 1096 dbSNP
rs1310928124 1117 dbSNP
rs1429588488 1130 dbSNP
rs1395407031 1138 dbSNP
rs866106420 1143 dbSNP
rs981711815 1149 dbSNP
rs1035961806 1150 dbSNP
rs189557557 1152 dbSNP
rs1421866873 1184 dbSNP
rs1254817503 1186 dbSNP
rs147409392 1187 dbSNP
rs990493549 1201 dbSNP
rs1485658036 1202 dbSNP
rs1166644506 1206 dbSNP
rs1221361889 1216 dbSNP
rs573008995 1221 dbSNP
rs1269768107 1222 dbSNP
rs544645489 1237 dbSNP
rs1219490316 1241 dbSNP
rs900042598 1242 dbSNP
rs996954656 1249 dbSNP
rs946526110 1253 dbSNP
rs1359735697 1256 dbSNP
rs1291246511 1264 dbSNP
rs558546911 1267 dbSNP
rs1407941934 1294 dbSNP
rs1395510906 1295 dbSNP
rs111783476 1301 dbSNP
rs923827467 1315 dbSNP
rs894037389 1316 dbSNP
rs1414991384 1317 dbSNP
rs751551572 1325 dbSNP
rs115334896 1329 dbSNP
rs1311322383 1331 dbSNP
rs113321770 1340 dbSNP
rs182086609 1343 dbSNP
rs1436370228 1347 dbSNP
rs1003671581 1353 dbSNP
rs1199456394 1355 dbSNP
rs1320337859 1359 dbSNP
rs1033756846 1362 dbSNP
rs958557379 1367 dbSNP
rs991305227 1368 dbSNP
rs1285809767 1369 dbSNP
rs540067356 1382 dbSNP
rs952580655 1389 dbSNP
rs1039712138 1390 dbSNP
rs982865454 1395 dbSNP
rs898573848 1396 dbSNP
rs61746422 1409 dbSNP
rs943692345 1412 dbSNP
rs532482042 1416 dbSNP
rs185840246 1417 dbSNP
rs1003052603 1418 dbSNP
rs1476374999 1423 dbSNP
rs752837987 1428 dbSNP
rs1035907905 1433 dbSNP
rs1422806550 1435 dbSNP
rs189825109 1439 dbSNP
rs1271436010 1443 dbSNP
rs932838791 1448 dbSNP
rs1162102668 1455 dbSNP
rs1053852377 1467 dbSNP
rs61746409 1471 dbSNP
rs1023332511 1491 dbSNP
rs968188202 1493 dbSNP
rs1043030751 1498 dbSNP
rs979229153 1524 dbSNP
rs923705630 1536 dbSNP
rs956510994 1537 dbSNP
rs1003940857 1540 dbSNP
rs756170362 1541 dbSNP
rs1033789801 1546 dbSNP
rs554394544 1548 dbSNP
rs111597443 1553 dbSNP
rs1226766644 1555 dbSNP
rs942661384 1558 dbSNP
rs1309323410 1559 dbSNP
rs1354502433 1565 dbSNP
rs952649184 1568 dbSNP
rs1488957858 1569 dbSNP
rs982751815 1570 dbSNP
rs1213814744 1576 dbSNP
rs4903232 1586 dbSNP
rs965094676 1586 dbSNP
rs1242232116 1590 dbSNP
rs1240116580 1591 dbSNP
rs1302445926 1594 dbSNP
rs1284479236 1595 dbSNP
rs1219430637 1602 dbSNP
rs919969121 1604 dbSNP
rs760345137 1608 dbSNP
rs931322509 1612 dbSNP
rs185354303 1615 dbSNP
rs1429341462 1620 dbSNP
rs1212044955 1625 dbSNP
rs1360608816 1642 dbSNP
rs1299297233 1643 dbSNP
rs887197358 1652 dbSNP
rs554422387 1654 dbSNP
rs112375799 1656 dbSNP
rs1175844021 1660 dbSNP
rs779098552 1663 dbSNP
rs746399970 1666 dbSNP
rs1427600277 1673 dbSNP
rs989609131 1680 dbSNP
rs1477498422 1688 dbSNP
rs1252097964 1689 dbSNP
rs190163408 1691 dbSNP
rs915451112 1692 dbSNP
rs945529218 1700 dbSNP
rs1279307099 1704 dbSNP
rs1354188826 1711 dbSNP
rs1313750334 1713 dbSNP
rs1042673669 1718 dbSNP
rs1436438451 1720 dbSNP
rs906760138 1728 dbSNP
rs1340541112 1735 dbSNP
rs1023704877 1739 dbSNP
rs11623040 1744 dbSNP
rs1402364907 1744 dbSNP
rs558228432 1773 dbSNP
rs1374242816 1783 dbSNP
rs1302621208 1784 dbSNP
rs150612463 1787 dbSNP
rs895241703 1795 dbSNP
rs994885490 1797 dbSNP
rs369005473 1801 dbSNP
rs1300087827 1805 dbSNP
rs1424403860 1812 dbSNP
rs1195991897 1813 dbSNP
rs1027731849 1816 dbSNP
rs1030674491 1836 dbSNP
rs956460488 1838 dbSNP
rs116065316 1844 dbSNP
rs111775639 1845 dbSNP
rs59444322 1847 dbSNP
rs1230985775 1852 dbSNP
rs181310290 1854 dbSNP
rs919848553 1855 dbSNP
rs1397157708 1857 dbSNP
rs10135649 1861 dbSNP
rs1296862329 1863 dbSNP
rs766223923 1871 dbSNP
rs989225655 1881 dbSNP
rs1047506003 1883 dbSNP
rs914962439 1884 dbSNP
rs908624365 1886 dbSNP
rs1457903575 1889 dbSNP
rs35783473 1890 dbSNP
rs397953316 1890 dbSNP
rs1367995788 1891 dbSNP
rs1235768275 1892 dbSNP
rs1165331872 1895 dbSNP
rs938782296 1898 dbSNP
rs1425535269 1899 dbSNP
rs1248111774 1904 dbSNP
rs1455577219 1914 dbSNP
rs945589913 1929 dbSNP
rs1191703238 1931 dbSNP
rs1239555716 1942 dbSNP
rs151272925 1950 dbSNP
rs1057306724 1962 dbSNP
rs1354990849 1962 dbSNP
rs1412525145 1964 dbSNP
rs559935234 1975 dbSNP
rs894669832 1985 dbSNP
rs948919658 1996 dbSNP
rs1043285925 1998 dbSNP
rs939565980 2004 dbSNP
rs868345981 2005 dbSNP
rs772460579 2016 dbSNP
rs759367152 2018 dbSNP
rs1000498103 2026 dbSNP
rs1378133058 2030 dbSNP
rs1465241931 2034 dbSNP
rs895181446 2044 dbSNP
rs1030666093 2047 dbSNP
rs1329454971 2053 dbSNP
rs529668180 2054 dbSNP
rs1157985887 2059 dbSNP
rs1049195143 2063 dbSNP
rs1007962535 2068 dbSNP
rs1019389633 2073 dbSNP
rs1274753531 2076 dbSNP
rs1191311357 2080 dbSNP
rs1366046619 2086 dbSNP
rs1267404455 2089 dbSNP
rs1211190319 2102 dbSNP
rs1489749042 2103 dbSNP
rs886497346 2104 dbSNP
rs1216718942 2106 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gucuuaggaaCGGACCCACg 5'
                    | | | ||| 
Target 5' ----------GGCAGAGUGa 3'
1 - 10
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000554924.1 | 3UTR | GGCAGAGUGAGACUCUGUCUCAAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000554924.1 | 3UTR | GGCAGAGUGAGACUCUGUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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