pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GPR156   
Synonyms GABABL, PGR28
Description G protein-coupled receptor 156
Transcript NM_001168271   
Other Transcripts NM_153002   
Expression
Putative miRNA Targets on GPR156
3'UTR of GPR156
(miRNA target sites are highlighted)
>GPR156|NM_001168271|3'UTR
   1 AAAGCAACAGAGCTGGTCTAGACACAGAGGTCAGTCCAAGAGAAGCTGTACCAAGGCCCACAGGAGAAGAGCCAATTTCT
  81 GGTCTTTGGGGAACAGATTAGTGCCCTGCATTTGACCAGCCCATACCATGTTTCAGCTAGGCTCACTGTGTTACTTTGAG
 161 TACTTCTTGATCTATAAAAAGAGAGGCATTGCCTGTCCTGTTACTACCTCGCAGCCTTACTATAAAAGACTCCAGTTGAG
 241 TGACTATGAAAGACACTGACTCCTTGGATAAAAGGTGCTGAATGAACACATAGGATTTTCTGTCCAGGTCAGCCTACATT
 321 CTGTAAAACTCTTAATATATTCAGATGGATGGCTGAATGGACAGACAGATGGAGAGATGCATGGGAAATTTCTGTAGAAC
 401 TTGAGGTGTGGACTGTGACCCATCAAACTGGCCTTTTGGTGGACAGACCTACCAGGAAGATAAGTCTCCTACATCCTTGG
 481 GCCTCCCACTCCTGGAAGGCAGTGGTTTTATTTCTGCTGAATGTTGTGAACAGCACCTCCCTAGATTCCAGCTTCTGGCC
 561 AGACCCAGCTCAGAGCCACCCCTACACCACTATTTCTTGATGGTGTCTTTCCACCATTATGGCACTTTACCCTCCTCTCT
 641 GAGACAGATCTCCATGCGCCCGCAGGCTTCCCAGATCTCTCCCCTGGGATCGGATGTACCTGAGGTCCTGACTGTCCCCA
 721 CTGTCCCCTTGTCCTGTGGCTCATCCTCGATTCACCCACTGATGCAGTTTTGTACTGCGGGGAGGCACACACCAGCAATT
 801 TCTGTTGGGGTATGGGAGAACCTGTTGGTCAAGAGTGCTTTTGGTTCCATTGGGGTTACATGACTACCAACAGACACATA
 881 AACCTGGAAGCCAAATGGAGAAATAAAAAGGAAGACACGAGGGACACGAAAACAGGAAAGAAAACAGGATTTGAATATTT
 961 CACTTGAGTCCAGCATAGTACTTGGCAATATCATATTTTTGTGATTCCTTTTGATAACCCTGTGAAGTAGACACTTTCAT
1041 TTTTACAGACAAGGATTATGAGGCTTAGAGAAATGAGGTAGTTTCCCGCAACATCACACTGCTGGACAGAGATGTACACA
1121 CAGCTCCTGGGACTCAAGTAGGTGGGTTTTCCCAGGGACACATGGCTTCATGTGTTCTTCTGGGAATGGCAGGTGACGCT
1201 TGGCAGACGAGACAACAAAGCAAGGCTCATGTAAGAAAGCTGGGATGTGCTCCCCTATAGTCCAGAATAATAGACCTGGG
1281 TCCTCACCTCAGGAAACGGGCCTCCACTTCCTCACTGCCAAAGGCCACACTGGCACCTCCCAAGGGAGCTGGGGAGCTGG
1361 TGAAGGATGAGTGCGAGGAACTCAGCCACCACCAGAGCCACAGGGAGAGCACACCTGGGTCCACTGTGCTTATTGCTGAG
1441 CTGGCTGTCATGTCCAGGCTGTCCCCTGCCCCGAGTCCTGTGTATACATCTGTGGGTGTGCACATGTTTGCATGAAGGAA
1521 TTCAGGCCTTATTAAATATTCTCAGAGGGGGAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucucguucUGGG-GCAGAGAUUu 5'
                  |||| | |||||:| 
Target 5' ggcactttACCCTCCTCTCTGAg 3'
621 - 643 138.00 -15.40
2
miRNA  3' ucuCGUUC--UGGGGC-AGAGAuuu 5'
             |||:|   ||| | |||||   
Target 5' cccGCAGGCTTCCCAGATCTCTccc 3'
659 - 683 117.00 -14.52
3
miRNA  3' ucUCGUUCUGGGGCAGAGAUUu 5'
            ||:|   |::  ||| ||| 
Target 5' tgAGTACTTCTTGATCTATAAa 3'
157 - 178 116.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26552741 8 COSMIC
COSN26551390 13 COSMIC
COSN2462871 37 COSMIC
COSN28655688 137 COSMIC
COSN28789072 186 COSMIC
COSN14983582 191 COSMIC
COSN1910614 342 COSMIC
COSN21332002 466 COSMIC
COSN26714011 898 COSMIC
COSN22487590 1319 COSMIC
rs1488763 1216 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781200485 5 dbSNP
rs1300639575 9 dbSNP
rs1340772709 12 dbSNP
rs1216901955 16 dbSNP
rs1274310511 25 dbSNP
rs1307338213 27 dbSNP
rs977922598 27 dbSNP
rs1023092445 30 dbSNP
rs760195127 33 dbSNP
rs1279697778 37 dbSNP
rs1014343003 45 dbSNP
rs1255242740 45 dbSNP
rs1469092491 46 dbSNP
rs1193181067 49 dbSNP
rs960295637 54 dbSNP
rs1364500443 57 dbSNP
rs1476424030 57 dbSNP
rs1031863158 60 dbSNP
rs966974556 64 dbSNP
rs1463959952 65 dbSNP
rs561477489 80 dbSNP
rs866113699 87 dbSNP
rs1022360573 90 dbSNP
rs1382657169 91 dbSNP
rs1394869070 93 dbSNP
rs1460595994 94 dbSNP
rs1321175344 98 dbSNP
rs551148266 108 dbSNP
rs989601236 116 dbSNP
rs1430799340 136 dbSNP
rs1300830619 142 dbSNP
rs1271328250 147 dbSNP
rs959350169 148 dbSNP
rs1433765478 154 dbSNP
rs1375698398 156 dbSNP
rs1175080663 160 dbSNP
rs77898950 162 dbSNP
rs1371936773 166 dbSNP
rs1194590063 168 dbSNP
rs902166855 169 dbSNP
rs1213364015 173 dbSNP
rs1003546795 174 dbSNP
rs1873070 186 dbSNP
rs1011072771 187 dbSNP
rs545471511 191 dbSNP
rs1189892954 197 dbSNP
rs60947625 204 dbSNP
rs944497718 211 dbSNP
rs1386647197 218 dbSNP
rs754035055 222 dbSNP
rs1400892328 227 dbSNP
rs890401124 230 dbSNP
rs1358008419 231 dbSNP
rs559697778 246 dbSNP
rs1048092143 247 dbSNP
rs542520471 248 dbSNP
rs1338842885 251 dbSNP
rs1295653521 256 dbSNP
rs1356555205 258 dbSNP
rs1244477669 259 dbSNP
rs929357462 275 dbSNP
rs1353131852 280 dbSNP
rs1205877436 300 dbSNP
rs920589539 300 dbSNP
rs1283652483 306 dbSNP
rs1270835928 312 dbSNP
rs9853378 314 dbSNP
rs1487345509 329 dbSNP
rs375205379 331 dbSNP
rs1258116042 332 dbSNP
rs933663148 335 dbSNP
rs1328103633 346 dbSNP
rs1365275139 349 dbSNP
rs1470316774 361 dbSNP
rs948815006 362 dbSNP
rs551927718 368 dbSNP
rs1310424705 386 dbSNP
rs758671450 397 dbSNP
rs1436014083 401 dbSNP
rs992977087 405 dbSNP
rs1376625965 406 dbSNP
rs960181480 422 dbSNP
rs1413970647 424 dbSNP
rs1355779670 430 dbSNP
rs1240107683 439 dbSNP
rs556756114 448 dbSNP
rs9853082 449 dbSNP
rs1395224987 458 dbSNP
rs1281083818 461 dbSNP
rs915090578 466 dbSNP
rs756181237 474 dbSNP
rs968955868 475 dbSNP
rs1022383962 476 dbSNP
rs1010540921 479 dbSNP
rs1378062123 480 dbSNP
rs1455273355 489 dbSNP
rs1367259912 492 dbSNP
rs1187811864 493 dbSNP
rs1393892987 497 dbSNP
rs900270230 499 dbSNP
rs1475744139 518 dbSNP
rs1017346344 522 dbSNP
rs1465979800 523 dbSNP
rs1259982880 535 dbSNP
rs1033778405 541 dbSNP
rs982097733 550 dbSNP
rs1392313059 555 dbSNP
rs1330982730 562 dbSNP
rs1375000261 564 dbSNP
rs577751547 581 dbSNP
rs765655810 585 dbSNP
rs1273860231 587 dbSNP
rs1008763533 597 dbSNP
rs1197650431 600 dbSNP
rs1354284866 603 dbSNP
rs1231065862 613 dbSNP
rs1271196932 618 dbSNP
rs1232542356 625 dbSNP
rs1339875479 632 dbSNP
rs1197811395 634 dbSNP
rs1236080988 636 dbSNP
rs1355911437 648 dbSNP
rs890285231 657 dbSNP
rs375015070 658 dbSNP
rs542992080 661 dbSNP
rs759965396 662 dbSNP
rs138924280 667 dbSNP
rs1170443116 671 dbSNP
rs1392658548 672 dbSNP
rs1387872275 678 dbSNP
rs929217759 682 dbSNP
rs1462418344 688 dbSNP
rs1420563835 689 dbSNP
rs1007700972 691 dbSNP
rs1157363773 692 dbSNP
rs899048395 699 dbSNP
rs1385135132 702 dbSNP
rs1469899689 705 dbSNP
rs1038120748 707 dbSNP
rs948700923 716 dbSNP
rs1184164218 720 dbSNP
rs916022056 726 dbSNP
rs1449951935 739 dbSNP
rs1326977304 746 dbSNP
rs111415077 748 dbSNP
rs67169145 748 dbSNP
rs60112606 749 dbSNP
rs76690928 750 dbSNP
rs1336663786 751 dbSNP
rs997842734 758 dbSNP
rs992862543 760 dbSNP
rs754233905 764 dbSNP
rs900874730 776 dbSNP
rs766906699 778 dbSNP
rs924774060 779 dbSNP
rs1221881009 784 dbSNP
rs1349634120 789 dbSNP
rs915163207 807 dbSNP
rs761145090 810 dbSNP
rs1349545814 827 dbSNP
rs969387746 834 dbSNP
rs1021853659 843 dbSNP
rs534712245 859 dbSNP
rs1399399678 866 dbSNP
rs1276211374 868 dbSNP
rs1357186927 884 dbSNP
rs1473448620 896 dbSNP
rs1233639609 907 dbSNP
rs145109836 918 dbSNP
rs141422746 919 dbSNP
rs1324633849 927 dbSNP
rs1260806761 928 dbSNP
rs9871988 929 dbSNP
rs1216599336 948 dbSNP
rs768198343 963 dbSNP
rs1017399711 967 dbSNP
rs1486882167 973 dbSNP
rs1182826076 974 dbSNP
rs970748376 994 dbSNP
rs1397347175 995 dbSNP
rs1161542410 1001 dbSNP
rs1381062333 1016 dbSNP
rs183120079 1018 dbSNP
rs1316798826 1019 dbSNP
rs1008648897 1022 dbSNP
rs551214226 1030 dbSNP
rs145428155 1034 dbSNP
rs1376614348 1038 dbSNP
rs1225187501 1045 dbSNP
rs1307249787 1057 dbSNP
rs1352408618 1061 dbSNP
rs190837954 1063 dbSNP
rs1350696404 1066 dbSNP
rs560498177 1068 dbSNP
rs1016485553 1069 dbSNP
rs1237330804 1078 dbSNP
rs1477159045 1080 dbSNP
rs1007667944 1085 dbSNP
rs993317045 1087 dbSNP
rs73177934 1088 dbSNP
rs1194315332 1099 dbSNP
rs371548770 1114 dbSNP
rs1357277861 1122 dbSNP
rs866058299 1131 dbSNP
rs1037607966 1136 dbSNP
rs1469841887 1137 dbSNP
rs186386533 1142 dbSNP
rs1213477601 1145 dbSNP
rs894475598 1151 dbSNP
rs1375737547 1152 dbSNP
rs1028025824 1153 dbSNP
rs1446231662 1156 dbSNP
rs998376975 1159 dbSNP
rs1347963301 1160 dbSNP
rs559323950 1162 dbSNP
rs1278508991 1163 dbSNP
rs1310851752 1166 dbSNP
rs1225187510 1177 dbSNP
rs1259056123 1182 dbSNP
rs1457495857 1186 dbSNP
rs1176931995 1189 dbSNP
rs60464555 1197 dbSNP
rs1190599555 1198 dbSNP
rs1042404607 1201 dbSNP
rs1234418115 1206 dbSNP
rs774343304 1208 dbSNP
rs529163980 1209 dbSNP
rs947560546 1213 dbSNP
rs1488763 1216 dbSNP
rs1430624000 1222 dbSNP
rs780913202 1225 dbSNP
rs544691016 1243 dbSNP
rs1272531034 1249 dbSNP
rs964413463 1253 dbSNP
rs910221929 1257 dbSNP
rs987101739 1259 dbSNP
rs1279241272 1265 dbSNP
rs1317679877 1268 dbSNP
rs954630012 1271 dbSNP
rs1197049218 1274 dbSNP
rs1026041246 1276 dbSNP
rs543290974 1290 dbSNP
rs770884114 1297 dbSNP
rs1220972447 1298 dbSNP
rs1245008167 1302 dbSNP
rs1375095262 1304 dbSNP
rs1194290857 1305 dbSNP
rs1174455718 1319 dbSNP
rs1422726013 1327 dbSNP
rs1455646033 1329 dbSNP
rs1046236527 1332 dbSNP
rs181553349 1336 dbSNP
rs1391041765 1341 dbSNP
rs1404341812 1343 dbSNP
rs1321028501 1348 dbSNP
rs1388341481 1350 dbSNP
rs575389263 1357 dbSNP
rs1279374435 1361 dbSNP
rs140125348 1362 dbSNP
rs1217155882 1364 dbSNP
rs1357352006 1374 dbSNP
rs762655486 1375 dbSNP
rs972446940 1387 dbSNP
rs555525876 1390 dbSNP
rs1279162447 1392 dbSNP
rs34897578 1406 dbSNP
rs1262348967 1411 dbSNP
rs1211082493 1413 dbSNP
rs894359654 1414 dbSNP
rs909449234 1415 dbSNP
rs1472264479 1426 dbSNP
rs758581529 1433 dbSNP
rs772878330 1437 dbSNP
rs1409597629 1439 dbSNP
rs1419750548 1441 dbSNP
rs1299388958 1447 dbSNP
rs572062246 1451 dbSNP
rs1360488749 1461 dbSNP
rs1398643390 1466 dbSNP
rs1057071824 1470 dbSNP
rs13092071 1472 dbSNP
rs747881476 1473 dbSNP
rs755224346 1474 dbSNP
rs1041789885 1484 dbSNP
rs947575745 1490 dbSNP
rs191759291 1496 dbSNP
rs1355993448 1506 dbSNP
rs914743251 1512 dbSNP
rs1241004056 1515 dbSNP
rs997695120 1521 dbSNP
rs1313730068 1524 dbSNP
rs569656094 1525 dbSNP
rs1212850201 1530 dbSNP
rs1039855617 1542 dbSNP
rs942938935 1544 dbSNP
rs1256682852 1548 dbSNP
rs557718053 1548 dbSNP
rs572955600 1551 dbSNP
rs114163422 1554 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            :|::| ||||||||||||  
Target 5' auGGUGAAACCCCGUCUCUAcu 3'
25 - 46
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000464295.1 | 3UTR | GAUUUCAAGACCAGCCUGGCCAACAUGGUGAAACCCCGUCUCUACUAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000464295.1 | 3UTR | UUUCAAGACCAGCCUGGCCAACAUGGUGAAACCCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla -0.674 5.8e-3 -0.615 1.3e-2 13 Click to see details
GSE32688 Pancreatic cancer 0.427 7.4e-3 0.347 2.6e-2 32 Click to see details
GSE38226 Liver fibrosis 0.345 6.3e-2 0.210 1.8e-1 21 Click to see details
GSE28544 Breast cancer 0.251 1.2e-1 0.318 6.5e-2 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.141 2.6e-1 -0.127 2.8e-1 23 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.081 3.5e-1 0.192 1.8e-1 25 Click to see details
GSE26953 Aortic valvular endothelial cells 0.069 3.7e-1 0.177 2.0e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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