pre-miRNA Information
pre-miRNA hsa-mir-3192   
Genomic Coordinates chr20: 18470615 - 18470691
Description Homo sapiens miR-3192 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3192-5p
Sequence 10| UCUGGGAGGUUGUAGCAGUGGAA |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906254403 3 dbSNP
rs554130490 4 dbSNP
rs773140898 6 dbSNP
rs376614009 11 dbSNP
rs899297329 12 dbSNP
rs1330418015 18 dbSNP
rs1402597660 21 dbSNP
rs995052311 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ULBP3   
Synonyms N2DL-3, NKG2DL3, RAET1N
Description UL16 binding protein 3
Transcript NM_024518   
Expression
Putative miRNA Targets on ULBP3
3'UTR of ULBP3
(miRNA target sites are highlighted)
>ULBP3|NM_024518|3'UTR
   1 GAAGAGTCATTTAGAGTGACAGGTGGAAGGTGATATCAAGAAGCCTCTGTTAGCCTGGTCTGGTTCCTGCTCTCCCTTCA
  81 GGGAGGCCGCCTGTCTACTCACCACTGTGCCTTTCTGGAAAGCAGGAGTTCAAGCCTTAGCAAGCCCAGAGGCCCCCAGC
 161 AGATGATGAGGACATTGTCGGCTCAACATCTCAGGCCACTCATTACCTTCGCTCATGATCCCAGCAGCCATTTTTCTTTT
 241 TTTTTTTTTGTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAAT
 321 CTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCA
 401 CCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCT
 481 CCTGACCTCATGATCCACCTGCCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAGCCATT
 561 TTTCTTAACACCTTCTGCCACTTTCTCTCGGTGCTAATGGATGGAATTCCTGCACAAGTTTTAACTGAACAAGAAATCCC
 641 AGCAAAAGGCATTTTCTTTCTACTTCTTTGATTGTGGAAAAGCAGACATTTCTCTGAAGCATGACCTTATTCTTCGAAAC
 721 GGTATTGCTAGTAAAATAGCATGCAGGACTTCAGACCTCAGGGATCCTTTCCATGCACTGACCAAGAATTGTATTAATCC
 801 TTTTTATCATTATAGTTTTTTTACATTTTCTCATTCTGTCAACCATATTGGAGTGAAGTGGCATAGTCATCACTCACTGT
 881 AATCTCCAACTCCTGGGCTCAAGTGATCCTCTAGACTCAGCCTCTAGAGTAGCTGGGACTACAGGCGCATGCCACCATGC
 961 CTGGCAAATTGTTTTATATTTAGGTAGAGATTGGGTCTTCCTATGTTGCGCAGGTAATAAAACTGTGAAAATCCTGGAAT
1041 ATAAGCTAAGAAATACCAATGTGGACATAGGGCCTGGCAAAGATTTCATGAAGAAGACACTAAAAACAATTGTAACAAAA
1121 ACAAAAATTGACAAATGGGACCTCATTAAACTAAAGAGCTTCTGCACAGAAAAAGAAACTAGCAACACGGTAAACAGACA
1201 GCGTGTAGAATGGGGAAACTATTTGCAAACTCTGCATCTGACAAAGGTCCAATATCCAGAATCTACAAAGTACTTAAACA
1281 ATTAGACAAGCAAGAAAAAAAAACCCAATTAAAAAATGTGCAAAGACATGAACAGACACTTTTCAAAAGAAGACATACAA
1361 GTGGCCAACAAACGTGAAAAAATGCTCAATATCACTAATCATCAGATAAGTGCAAATCAAAACTGCAATGAGTTACCATC
1441 TCTTACCAGTCACAAAGTTGGAGATGGTGGTGAGGCTGCAGAGGAAAAGAAACAGACACTGTTGGTGGGAAAGCAAACTT
1521 GTTCAGCCGCTATGGAAAGCAGTTTGGAGATTTCTCCAAGAACTTAAAATAGAACTACCATTCAAGCCTGCAATCCCACT
1601 ACTCGGGATATATCCACAGGAAAAGAATTCATTTTATCCAAAAGACACCTGCACCAATATGTTCATTACAGTGCTATTCT
1681 TACTAGCAAGGACACAGAATCAACCTAAGTGCCCAGCAACACTGAATTGAATGAAAAAAATGTGGTACATAAACACCATG
1761 GAAATCTATGCAGCCACCAAACACAGCAAAATCATGTCCTTTTCAGCAACATGGATGGAACTAGAGGCTATTATCCTAAG
1841 CAACCTAATGCAAGAACAGAAAACTACATACTGCATGTTCCCATTGGAAAGTGGCAGCTACACATTGAATTCACATGAAC
1921 CAGAGGCACTGGAGATTACTAGACAGGTGAGACAGGAGGGGCACCTGGGCTGAAAAACCACCTGTTGGGTACCATGCTTA
2001 CTGTTTGAGTGATGAGATCATTGGGACACCAAGCCTCAGCCTTCCAAAATCTACCCATGTAACAAACCTGTATGTGTACC
2081 CTTTAATCTATAATAAAGGTTAAAATTAAAGATTCGTAAGTAAAATAAAATGACATAGAGCCCTCCAAAAAATGGGGTTA
2161 ACTGAGTGGAACGAGAGAACTTTGCACTATGAACGCTAACCCAGATCAAAAACTAAACTCTAGTCATTTAAAATAATCGT
2241 AAGTTGTATATGATGATAATTGTATAAAAGTTATACGTGAAAGTGCCAAACCCTAAAATTAAACACTGCATAATGAAATT
2321 ATACAAGAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaGGU-GACGAUGUUGGAGGGUCu 5'
            ||| ||||  |::|||||||| 
Target 5' atCCACCTGCCTCGGCCTCCCAGa 3'
493 - 516 173.00 -33.40
2
miRNA  3' aaGGUGACGAUGUUGGAGGG-UCu 5'
            |: ||||  ||:|||||| || 
Target 5' ttCTCCTGCCTCAGCCTCCCGAGt 3'
360 - 383 141.00 -25.30
3
miRNA  3' aaGGUGACGAU---GUUGGAGGGUCu 5'
            :|||||| |   | :|:||||:| 
Target 5' gcTCACTGCAAGCTCCGCTTCCCGGg 3'
325 - 350 137.00 -22.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM7896657 4 COSMIC
COSN1083938 13 COSMIC
COSN15330862 13 COSMIC
COSN30103095 23 COSMIC
COSN28801497 73 COSMIC
COSN14702330 267 COSMIC
COSN7785922 417 COSMIC
COSN7694142 586 COSMIC
COSN2147252 646 COSMIC
COSN1326780 852 COSMIC
COSN29284926 934 COSMIC
COSN1326779 1071 COSMIC
COSN21264111 1232 COSMIC
COSN14689823 1421 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs367617086 1 dbSNP
rs1341877277 3 dbSNP
rs1187565247 6 dbSNP
rs1463308613 7 dbSNP
rs557427034 8 dbSNP
rs912558 13 dbSNP
rs1488030049 14 dbSNP
rs749793921 16 dbSNP
rs201165093 21 dbSNP
rs1223616544 22 dbSNP
rs780440022 24 dbSNP
rs201738415 29 dbSNP
rs750684616 30 dbSNP
rs867082981 32 dbSNP
rs781226692 35 dbSNP
rs1300077292 37 dbSNP
rs1195586605 47 dbSNP
rs370610702 50 dbSNP
rs535793998 51 dbSNP
rs540380088 57 dbSNP
rs1459856127 64 dbSNP
rs1194164843 71 dbSNP
rs4869815 73 dbSNP
rs905711639 80 dbSNP
rs1352512754 81 dbSNP
rs1393647289 86 dbSNP
rs1461841190 88 dbSNP
rs1327396459 100 dbSNP
rs1385796477 101 dbSNP
rs1283525493 107 dbSNP
rs1236052004 114 dbSNP
rs1345038815 116 dbSNP
rs546683436 119 dbSNP
rs1436343854 120 dbSNP
rs949529860 121 dbSNP
rs75931284 125 dbSNP
rs564466074 130 dbSNP
rs1266387961 131 dbSNP
rs1464475737 138 dbSNP
rs1205737997 139 dbSNP
rs972091716 143 dbSNP
rs1422212663 146 dbSNP
rs1360290505 147 dbSNP
rs940680088 149 dbSNP
rs551078913 152 dbSNP
rs1166965041 159 dbSNP
rs183994204 160 dbSNP
rs764250221 164 dbSNP
rs140830385 166 dbSNP
rs752859667 167 dbSNP
rs1265316688 173 dbSNP
rs976256921 179 dbSNP
rs1220411471 182 dbSNP
rs1287026140 184 dbSNP
rs1194113057 185 dbSNP
rs542810802 187 dbSNP
rs765502687 189 dbSNP
rs1020026077 195 dbSNP
rs111674412 196 dbSNP
rs529182751 198 dbSNP
rs1211739256 202 dbSNP
rs1442678380 205 dbSNP
rs1370753819 207 dbSNP
rs1210430498 213 dbSNP
rs34958478 215 dbSNP
rs1009910188 217 dbSNP
rs1217021438 221 dbSNP
rs1343479940 234 dbSNP
rs1409710737 235 dbSNP
rs1418365140 247 dbSNP
rs892808375 258 dbSNP
rs1464292441 259 dbSNP
rs12662067 267 dbSNP
rs2010259 268 dbSNP
rs1340235232 278 dbSNP
rs1296769824 285 dbSNP
rs1417043057 291 dbSNP
rs1306488962 300 dbSNP
rs1373262311 301 dbSNP
rs150995323 312 dbSNP
rs1392465362 313 dbSNP
rs767402603 314 dbSNP
rs1309324783 316 dbSNP
rs1450428416 327 dbSNP
rs1360014517 330 dbSNP
rs905768463 333 dbSNP
rs1350278997 334 dbSNP
rs1212764894 346 dbSNP
rs1046014983 350 dbSNP
rs368895972 363 dbSNP
rs1177708724 365 dbSNP
rs1252098224 367 dbSNP
rs1425882076 368 dbSNP
rs1430929145 383 dbSNP
rs1192417251 385 dbSNP
rs1395312480 392 dbSNP
rs879792607 393 dbSNP
rs557461727 398 dbSNP
rs1354305340 403 dbSNP
rs543878442 407 dbSNP
rs574963075 408 dbSNP
rs1462979010 411 dbSNP
rs1300389634 415 dbSNP
rs1366042266 418 dbSNP
rs1440307532 427 dbSNP
rs1421161274 428 dbSNP
rs896946521 432 dbSNP
rs555555395 437 dbSNP
rs1373490057 442 dbSNP
rs117292154 446 dbSNP
rs1270706481 451 dbSNP
rs1306675836 455 dbSNP
rs1205195615 458 dbSNP
rs1253030274 466 dbSNP
rs1472911367 467 dbSNP
rs567099832 470 dbSNP
rs909222765 471 dbSNP
rs186924724 484 dbSNP
rs183132590 485 dbSNP
rs563117415 488 dbSNP
rs1465520934 491 dbSNP
rs1258164920 498 dbSNP
rs1199770724 515 dbSNP
rs932248037 525 dbSNP
rs922207188 527 dbSNP
rs1348654532 535 dbSNP
rs976692673 537 dbSNP
rs966247410 538 dbSNP
rs1396783739 542 dbSNP
rs1230443359 553 dbSNP
rs768046183 556 dbSNP
rs1433222061 561 dbSNP
rs550966404 562 dbSNP
rs1020373101 565 dbSNP
rs1446111794 566 dbSNP
rs1297379383 568 dbSNP
rs988539165 571 dbSNP
rs1212985981 572 dbSNP
rs1273309015 581 dbSNP
rs957090156 587 dbSNP
rs1402489955 589 dbSNP
rs573147621 596 dbSNP
rs1332165543 614 dbSNP
rs1241187027 615 dbSNP
rs1001139093 616 dbSNP
rs1465013197 623 dbSNP
rs531044226 624 dbSNP
rs2152102 635 dbSNP
rs1166247492 644 dbSNP
rs1420175433 645 dbSNP
rs2010440 646 dbSNP
rs1317681623 652 dbSNP
rs1346023839 653 dbSNP
rs1433135439 654 dbSNP
rs1014547647 655 dbSNP
rs1293849435 657 dbSNP
rs1336802475 658 dbSNP
rs897004798 660 dbSNP
rs148912591 663 dbSNP
rs373430837 665 dbSNP
rs1217496498 670 dbSNP
rs887842058 679 dbSNP
rs931994674 680 dbSNP
rs921895700 681 dbSNP
rs1040634452 685 dbSNP
rs1177518020 686 dbSNP
rs1457699188 696 dbSNP
rs944931348 699 dbSNP
rs1402701357 701 dbSNP
rs1171982252 710 dbSNP
rs1012639528 729 dbSNP
rs560227717 731 dbSNP
rs913415841 732 dbSNP
rs1413972176 733 dbSNP
rs1224438654 734 dbSNP
rs781669967 738 dbSNP
rs1357306483 739 dbSNP
rs957144095 740 dbSNP
rs1322639859 744 dbSNP
rs1350731759 746 dbSNP
rs925696594 754 dbSNP
rs1277776726 764 dbSNP
rs191320285 767 dbSNP
rs1212052082 768 dbSNP
rs1379452158 771 dbSNP
rs1310054050 772 dbSNP
rs1282894238 775 dbSNP
rs1446212703 792 dbSNP
rs1436644271 795 dbSNP
rs1374570012 799 dbSNP
rs1233572813 802 dbSNP
rs1471210435 804 dbSNP
rs980224651 804 dbSNP
rs2152101 805 dbSNP
rs563758724 810 dbSNP
rs186025433 821 dbSNP
rs961269733 833 dbSNP
rs117604315 836 dbSNP
rs1328080302 844 dbSNP
rs1336228860 845 dbSNP
rs1448395419 846 dbSNP
rs1300545130 849 dbSNP
rs1369861569 850 dbSNP
rs1234563947 852 dbSNP
rs1380589919 852 dbSNP
rs1306137937 857 dbSNP
rs1337829010 868 dbSNP
rs1195538141 869 dbSNP
rs1274355648 877 dbSNP
rs1157523342 882 dbSNP
rs1439992739 883 dbSNP
rs1211913071 888 dbSNP
rs1252439446 892 dbSNP
rs1005385323 905 dbSNP
rs1437204210 915 dbSNP
rs2184452 916 dbSNP
rs1193380417 925 dbSNP
rs1489111912 932 dbSNP
rs1246458698 934 dbSNP
rs1049183502 939 dbSNP
rs996627818 945 dbSNP
rs1323386691 950 dbSNP
rs1393055318 952 dbSNP
rs1356111539 965 dbSNP
rs900521077 969 dbSNP
rs542101780 976 dbSNP
rs1040749202 978 dbSNP
rs1315151323 988 dbSNP
rs1231995825 993 dbSNP
rs945006712 994 dbSNP
rs1468951214 998 dbSNP
rs1215588096 1006 dbSNP
rs1259951558 1007 dbSNP
rs1387244418 1008 dbSNP
rs573373013 1013 dbSNP
rs1192223029 1019 dbSNP
rs1373425070 1025 dbSNP
rs1366883387 1028 dbSNP
rs1301048949 1029 dbSNP
rs1401682749 1031 dbSNP
rs1360932159 1040 dbSNP
rs1157617106 1041 dbSNP
rs1461534066 1046 dbSNP
rs1417510032 1048 dbSNP
rs1381288487 1058 dbSNP
rs1382339204 1058 dbSNP
rs1425731898 1062 dbSNP
rs35002752 1063 dbSNP
rs913469455 1066 dbSNP
rs1053256811 1067 dbSNP
rs936179733 1068 dbSNP
rs1293242046 1077 dbSNP
rs13199618 1095 dbSNP
rs1247091718 1098 dbSNP
rs1258981059 1106 dbSNP
rs1425160417 1120 dbSNP
rs979894833 1124 dbSNP
rs180710886 1140 dbSNP
rs547425450 1141 dbSNP
rs1264372018 1154 dbSNP
rs367929126 1155 dbSNP
rs1216110663 1157 dbSNP
rs1485036361 1159 dbSNP
rs1257808579 1164 dbSNP
rs557401934 1173 dbSNP
rs1361553750 1174 dbSNP
rs916947931 1180 dbSNP
rs992883464 1187 dbSNP
rs1362014061 1202 dbSNP
rs1413361106 1209 dbSNP
rs1312580470 1212 dbSNP
rs961323278 1213 dbSNP
rs1281226551 1221 dbSNP
rs1220406464 1224 dbSNP
rs1335222674 1225 dbSNP
rs1015510867 1237 dbSNP
rs984006179 1238 dbSNP
rs952528242 1240 dbSNP
rs1208479069 1243 dbSNP
rs1028553343 1246 dbSNP
rs996290685 1248 dbSNP
rs900572182 1249 dbSNP
rs1247868813 1253 dbSNP
rs1403968648 1263 dbSNP
rs1302909682 1273 dbSNP
rs147871652 1277 dbSNP
rs1381784010 1279 dbSNP
rs1432418436 1282 dbSNP
rs1008852448 1291 dbSNP
rs892082124 1293 dbSNP
rs1053301449 1295 dbSNP
rs1403274867 1297 dbSNP
rs1296981756 1303 dbSNP
rs1396356480 1305 dbSNP
rs936233106 1313 dbSNP
rs1479105124 1319 dbSNP
rs1048451422 1321 dbSNP
rs568616182 1322 dbSNP
rs1044943348 1334 dbSNP
rs1312535669 1337 dbSNP
rs1426943495 1348 dbSNP
rs1258613423 1352 dbSNP
rs1480233259 1359 dbSNP
rs1201249374 1362 dbSNP
rs1239455886 1367 dbSNP
rs548653891 1371 dbSNP
rs1192591453 1373 dbSNP
rs1261367197 1376 dbSNP
rs1395258029 1379 dbSNP
rs1435309250 1380 dbSNP
rs1168695446 1388 dbSNP
rs1200415340 1390 dbSNP
rs1318571537 1392 dbSNP
rs1333521710 1397 dbSNP
rs1392333948 1409 dbSNP
rs1277309126 1412 dbSNP
rs113156940 1413 dbSNP
rs1369955149 1416 dbSNP
rs1341893505 1417 dbSNP
rs1293104668 1420 dbSNP
rs111496180 1421 dbSNP
rs11491485 1427 dbSNP
rs1219166218 1429 dbSNP
rs1395108481 1430 dbSNP
rs1466765894 1432 dbSNP
rs546446705 1437 dbSNP
rs1246930021 1438 dbSNP
rs1307885445 1439 dbSNP
rs939677252 1441 dbSNP
rs1332837453 1443 dbSNP
rs908170420 1444 dbSNP
rs1478456965 1454 dbSNP
rs1173427765 1456 dbSNP
rs1467620122 1463 dbSNP
rs13199061 1468 dbSNP
rs28659918 1469 dbSNP
rs1167694167 1470 dbSNP
rs1165663305 1471 dbSNP
rs12178372 1472 dbSNP
rs1460726329 1472 dbSNP
rs1351849350 1474 dbSNP
rs1370575095 1475 dbSNP
rs1188446786 1476 dbSNP
rs1423494939 1477 dbSNP
rs866687346 1478 dbSNP
rs1037764761 1479 dbSNP
rs943456949 1480 dbSNP
rs910363077 1481 dbSNP
rs112991117 1482 dbSNP
rs1196251525 1483 dbSNP
rs1256030765 1483 dbSNP
rs13199162 1483 dbSNP
rs1416052085 1483 dbSNP
rs1475134288 1483 dbSNP
rs61195794 1483 dbSNP
rs1158631424 1484 dbSNP
rs1257423005 1485 dbSNP
rs933228401 1485 dbSNP
rs1353543453 1486 dbSNP
rs534414363 1486 dbSNP
rs555605014 1486 dbSNP
rs770523512 1486 dbSNP
rs1194014263 1487 dbSNP
rs1358134941 1488 dbSNP
rs1265838620 1489 dbSNP
rs1380677303 1489 dbSNP
rs1243571215 1490 dbSNP
rs1221523901 1491 dbSNP
rs1380184150 1496 dbSNP
rs1283158891 1497 dbSNP
rs1310789735 1497 dbSNP
rs1353893062 1498 dbSNP
rs1491512543 1498 dbSNP
rs1188821649 1499 dbSNP
rs1219265491 1499 dbSNP
rs1278616724 1499 dbSNP
rs1468689461 1499 dbSNP
rs1491243024 1499 dbSNP
rs57614625 1499 dbSNP
rs777439118 1499 dbSNP
rs1176621903 1500 dbSNP
rs1491418898 1500 dbSNP
rs563996473 1503 dbSNP
rs1395190936 1504 dbSNP
rs1328701545 1505 dbSNP
rs1413885814 1507 dbSNP
rs1334770140 1509 dbSNP
rs1390188349 1511 dbSNP
rs1393277700 1512 dbSNP
rs1164242104 1517 dbSNP
rs1424236937 1519 dbSNP
rs1383681142 1520 dbSNP
rs1301753669 1525 dbSNP
rs1160531831 1528 dbSNP
rs1440328873 1529 dbSNP
rs546829967 1530 dbSNP
rs1281350828 1532 dbSNP
rs1436516696 1535 dbSNP
rs1232389899 1536 dbSNP
rs1179513613 1541 dbSNP
rs371614016 1548 dbSNP
rs1267757600 1549 dbSNP
rs984058616 1551 dbSNP
rs1356814275 1557 dbSNP
rs1427200493 1569 dbSNP
rs1287633199 1573 dbSNP
rs1408128567 1574 dbSNP
rs796490088 1576 dbSNP
rs1352270777 1580 dbSNP
rs1277297027 1581 dbSNP
rs1237480285 1582 dbSNP
rs1330112349 1584 dbSNP
rs1234435427 1586 dbSNP
rs952580724 1588 dbSNP
rs1333383247 1597 dbSNP
rs1214462816 1602 dbSNP
rs527686493 1612 dbSNP
rs1211850131 1613 dbSNP
rs1404796594 1619 dbSNP
rs1252617975 1632 dbSNP
rs553620 1633 dbSNP
rs377040672 1636 dbSNP
rs1028186521 1642 dbSNP
rs1451540227 1643 dbSNP
rs1407301814 1644 dbSNP
rs1156947757 1645 dbSNP
rs975634245 1646 dbSNP
rs964864204 1648 dbSNP
rs1378196232 1649 dbSNP
rs1325989405 1650 dbSNP
rs564054399 1652 dbSNP
rs1489768274 1659 dbSNP
rs1019440678 1660 dbSNP
rs1216832735 1661 dbSNP
rs1487781634 1662 dbSNP
rs186590741 1663 dbSNP
rs559912589 1664 dbSNP
rs1220513232 1671 dbSNP
rs1347750543 1676 dbSNP
rs368523204 1678 dbSNP
rs891814839 1679 dbSNP
rs1445093699 1680 dbSNP
rs1031604625 1688 dbSNP
rs577617377 1691 dbSNP
rs1000433503 1697 dbSNP
rs1223456882 1698 dbSNP
rs1367343538 1704 dbSNP
rs1343978464 1708 dbSNP
rs181900050 1709 dbSNP
rs1400808466 1710 dbSNP
rs1344886238 1720 dbSNP
rs1299123404 1723 dbSNP
rs537482431 1725 dbSNP
rs924510698 1730 dbSNP
rs574869524 1732 dbSNP
rs1416174421 1738 dbSNP
rs190131358 1739 dbSNP
rs1175555538 1741 dbSNP
rs1259218179 1742 dbSNP
rs1479433393 1748 dbSNP
rs1215696397 1755 dbSNP
rs1286463074 1757 dbSNP
rs1489251277 1761 dbSNP
rs1187308758 1764 dbSNP
rs185200470 1766 dbSNP
rs1194179137 1767 dbSNP
rs147696243 1776 dbSNP
rs612770 1777 dbSNP
rs1438682136 1778 dbSNP
rs1211806198 1779 dbSNP
rs539247151 1782 dbSNP
rs561343102 1783 dbSNP
rs1403490600 1787 dbSNP
rs1397867144 1788 dbSNP
rs1261993335 1792 dbSNP
rs1376522937 1800 dbSNP
rs1057287712 1813 dbSNP
rs1309770296 1815 dbSNP
rs867465724 1822 dbSNP
rs541379771 1823 dbSNP
rs550446078 1825 dbSNP
rs1260378376 1840 dbSNP
rs28437826 1846 dbSNP
rs561748890 1849 dbSNP
rs547845097 1856 dbSNP
rs1201735942 1863 dbSNP
rs921177771 1864 dbSNP
rs1457073658 1876 dbSNP
rs975308210 1882 dbSNP
rs34938260 1889 dbSNP
rs912373074 1889 dbSNP
rs1175715962 1893 dbSNP
rs1284744040 1896 dbSNP
rs1468022317 1906 dbSNP
rs192746577 1908 dbSNP
rs559139780 1927 dbSNP
rs1447541345 1932 dbSNP
rs1333652394 1945 dbSNP
rs546464497 1948 dbSNP
rs1031654022 1949 dbSNP
rs1000147474 1953 dbSNP
rs1235286880 1954 dbSNP
rs1336206646 1955 dbSNP
rs1468147486 1960 dbSNP
rs1402447650 1969 dbSNP
rs1171121193 1972 dbSNP
rs1191041133 1976 dbSNP
rs1268454398 1977 dbSNP
rs116478323 1979 dbSNP
rs1168976636 1980 dbSNP
rs564002989 1982 dbSNP
rs1423482192 1988 dbSNP
rs1466212335 2005 dbSNP
rs1417149644 2008 dbSNP
rs544104853 2016 dbSNP
rs1472942625 2022 dbSNP
rs775006728 2025 dbSNP
rs1181276272 2026 dbSNP
rs1388246860 2029 dbSNP
rs575157974 2032 dbSNP
rs1276266580 2035 dbSNP
rs1057293840 2039 dbSNP
rs1003996753 2042 dbSNP
rs886839960 2045 dbSNP
rs1048130313 2056 dbSNP
rs879746101 2071 dbSNP
rs1489687857 2073 dbSNP
rs1191867633 2094 dbSNP
rs1263118063 2096 dbSNP
rs1478427390 2115 dbSNP
rs1307229145 2116 dbSNP
rs376311004 2119 dbSNP
rs1405040216 2125 dbSNP
rs554964226 2135 dbSNP
rs920906650 2142 dbSNP
rs1351795225 2155 dbSNP
rs1271361245 2159 dbSNP
rs1230209087 2162 dbSNP
rs534669805 2179 dbSNP
rs1040044718 2180 dbSNP
rs1279592357 2189 dbSNP
rs1376365520 2191 dbSNP
rs1227204074 2194 dbSNP
rs1314451397 2201 dbSNP
rs943939520 2211 dbSNP
rs1214977801 2215 dbSNP
rs1285747192 2219 dbSNP
rs1488927234 2223 dbSNP
rs28437445 2224 dbSNP
rs558774471 2225 dbSNP
rs1472528450 2230 dbSNP
rs956161684 2236 dbSNP
rs375097955 2238 dbSNP
rs1438054811 2241 dbSNP
rs978779827 2242 dbSNP
rs554067811 2243 dbSNP
rs1352507156 2247 dbSNP
rs969124939 2250 dbSNP
rs1022943124 2257 dbSNP
rs778212203 2261 dbSNP
rs1243804656 2277 dbSNP
rs1302902111 2288 dbSNP
rs1013600867 2290 dbSNP
rs1384293143 2291 dbSNP
rs1237466846 2292 dbSNP
rs546103445 2297 dbSNP
rs1309052771 2308 dbSNP
rs774204649 2315 dbSNP
rs1440936915 2317 dbSNP
rs1242721027 2321 dbSNP
rs1277125668 2325 dbSNP
rs570290965 2330 dbSNP
rs1210986605 2331 dbSNP
rs1239285659 2361 dbSNP
rs1456643903 2364 dbSNP
rs1178277947 2367 dbSNP
rs1314594375 2368 dbSNP
rs1381103828 2369 dbSNP
rs1178238227 2371 dbSNP
rs112106333 2373 dbSNP
rs1480614025 2374 dbSNP
rs150887082 2375 dbSNP
rs1224313320 2377 dbSNP
rs748399233 2384 dbSNP
rs1413834299 2386 dbSNP
rs1176206665 2392 dbSNP
rs1490573817 2393 dbSNP
rs1443875480 2397 dbSNP
rs1330303916 2398 dbSNP
rs1377100343 2409 dbSNP
rs536967763 2413 dbSNP
rs189703479 2415 dbSNP
rs183647521 2421 dbSNP
rs610039 2422 dbSNP
rs775093460 2425 dbSNP
rs1316172841 2428 dbSNP
rs1198013066 2430 dbSNP
rs610025 2436 dbSNP
rs1183803417 2438 dbSNP
rs1295062001 2447 dbSNP
rs1244733281 2457 dbSNP
rs1477684536 2458 dbSNP
rs552284428 2465 dbSNP
rs1431298436 2467 dbSNP
rs1364746699 2468 dbSNP
rs1463612279 2469 dbSNP
rs141564316 2475 dbSNP
rs1400655390 2480 dbSNP
rs776488049 2482 dbSNP
rs191096571 2485 dbSNP
rs1330866873 2489 dbSNP
rs1437578600 2490 dbSNP
rs1285752859 2505 dbSNP
rs891037559 2517 dbSNP
rs1218151320 2521 dbSNP
rs1052252283 2523 dbSNP
rs1320320382 2530 dbSNP
rs599319 2530 dbSNP
rs186633588 2535 dbSNP
rs1289365275 2537 dbSNP
rs925077360 2537 dbSNP
rs778086757 2539 dbSNP
rs947468040 2540 dbSNP
rs561374546 2541 dbSNP
rs1423688967 2544 dbSNP
rs1476220228 2552 dbSNP
rs915928153 2563 dbSNP
rs472469 2569 dbSNP
rs960607675 2570 dbSNP
rs1406330417 2572 dbSNP
rs1193431021 2580 dbSNP
rs1359259074 2590 dbSNP
rs1035935859 2594 dbSNP
rs1328298748 2602 dbSNP
rs1242648589 2603 dbSNP
rs1268655638 2606 dbSNP
rs1220488728 2607 dbSNP
rs1489418341 2608 dbSNP
rs1210273268 2613 dbSNP
rs1293671597 2616 dbSNP
rs1487292893 2616 dbSNP
rs148802740 2622 dbSNP
rs982998564 2626 dbSNP
rs1184702144 2629 dbSNP
rs558655240 2634 dbSNP
rs1472918020 2639 dbSNP
rs1315201048 2645 dbSNP
rs1458598389 2648 dbSNP
rs1303240614 2653 dbSNP
rs1378829323 2660 dbSNP
rs1224069466 2661 dbSNP
rs1027125410 2662 dbSNP
rs1387691708 2663 dbSNP
rs1394379858 2673 dbSNP
rs1333579767 2675 dbSNP
rs1341370042 2682 dbSNP
rs1248411881 2683 dbSNP
rs995692587 2688 dbSNP
rs146172412 2692 dbSNP
rs141538607 2693 dbSNP
rs386707001 2694 dbSNP
rs1261251034 2703 dbSNP
rs562107758 2705 dbSNP
rs7769252 2708 dbSNP
rs1287776862 2716 dbSNP
rs755109175 2717 dbSNP
rs566791488 2726 dbSNP
rs1043556087 2731 dbSNP
rs548687349 2732 dbSNP
rs991933134 2734 dbSNP
rs531872365 2737 dbSNP
rs928581544 2740 dbSNP
rs1478920133 2759 dbSNP
rs73004034 2760 dbSNP
rs568391808 2761 dbSNP
rs373558934 2762 dbSNP
rs534645650 2765 dbSNP
rs763895074 2766 dbSNP
rs1027178335 2796 dbSNP
rs565515489 2801 dbSNP
rs552170956 2804 dbSNP
rs1008351804 2819 dbSNP
rs1018029241 2819 dbSNP
rs890808874 2822 dbSNP
rs1030597335 2823 dbSNP
rs1457032597 2826 dbSNP
rs183416462 2828 dbSNP
rs1220308022 2831 dbSNP
rs999428550 2837 dbSNP
rs144668002 2838 dbSNP
rs1168601226 2840 dbSNP
rs1399924174 2845 dbSNP
rs550399642 2846 dbSNP
rs1294339139 2856 dbSNP
rs778931402 2858 dbSNP
rs1298583723 2863 dbSNP
rs1043994887 2865 dbSNP
rs1380192410 2877 dbSNP
rs1012073154 2878 dbSNP
rs1380659278 2881 dbSNP
rs1346007018 2890 dbSNP
rs1224880725 2902 dbSNP
rs894938456 2910 dbSNP
rs552827751 2914 dbSNP
rs938726664 2917 dbSNP
rs55993781 2919 dbSNP
rs1047075638 2926 dbSNP
rs1209552191 2927 dbSNP
rs1270302410 2927 dbSNP
rs1470578350 2928 dbSNP
rs930248562 2932 dbSNP
rs1191645824 2937 dbSNP
rs6557278 2955 dbSNP
rs1478160069 2959 dbSNP
rs1348289262 2960 dbSNP
rs1456211249 2969 dbSNP
rs974696466 2970 dbSNP
rs1366190621 2974 dbSNP
rs1374012734 2981 dbSNP
rs1406666508 2985 dbSNP
rs1275813669 2994 dbSNP
rs1339288484 3002 dbSNP
rs1214574062 3011 dbSNP
rs964247205 3014 dbSNP
rs1319535588 3026 dbSNP
rs1221353466 3041 dbSNP
rs1192690774 3044 dbSNP
rs911355174 3051 dbSNP
rs1215106209 3058 dbSNP
rs1263016933 3059 dbSNP
rs986524929 3060 dbSNP
rs1188308147 3063 dbSNP
rs1258320404 3071 dbSNP
rs570616272 3078 dbSNP
rs1423433085 3080 dbSNP
rs1162766910 3082 dbSNP
rs955112934 3084 dbSNP
rs193236208 3101 dbSNP
rs1460813049 3117 dbSNP
rs527959337 3126 dbSNP
rs999144605 3147 dbSNP
rs150358206 3150 dbSNP
rs79023798 3154 dbSNP
rs188479165 3159 dbSNP
rs1227374512 3163 dbSNP
rs4869814 3170 dbSNP
rs1056672576 3171 dbSNP
rs543644692 3190 dbSNP
rs1002980490 3191 dbSNP
rs1285957498 3197 dbSNP
rs1224754087 3198 dbSNP
rs369161827 3212 dbSNP
rs1218087777 3220 dbSNP
rs1235800836 3222 dbSNP
rs1483080140 3228 dbSNP
rs1184453914 3236 dbSNP
rs13729 3250 dbSNP
rs183542879 3254 dbSNP
rs1407223867 3256 dbSNP
rs1401216843 3259 dbSNP
rs1160737399 3261 dbSNP
rs13657 3262 dbSNP
rs1446564326 3273 dbSNP
rs942917157 3296 dbSNP
rs773656852 3302 dbSNP
rs911424400 3303 dbSNP
rs1216525982 3320 dbSNP
rs772363388 3327 dbSNP
rs1225959087 3329 dbSNP
rs376152695 3332 dbSNP
rs878862036 3335 dbSNP
rs1393675008 3339 dbSNP
rs748674842 3345 dbSNP
rs923684929 3348 dbSNP
rs1397618145 3349 dbSNP
rs562913520 3355 dbSNP
rs1456591081 3366 dbSNP
rs1176622182 3371 dbSNP
rs1232082822 3373 dbSNP
rs558595538 3385 dbSNP
rs977779597 3390 dbSNP
rs1460645002 3405 dbSNP
rs867615955 3406 dbSNP
rs967744415 3409 dbSNP
rs1407897516 3411 dbSNP
rs1463730619 3418 dbSNP
rs1328671212 3419 dbSNP
rs1022357514 3427 dbSNP
rs1012180808 3428 dbSNP
rs1273609235 3435 dbSNP
rs1367452591 3447 dbSNP
rs1224251435 3450 dbSNP
rs1285271479 3451 dbSNP
rs1316360242 3453 dbSNP
rs1198267545 3455 dbSNP
rs959531687 3457 dbSNP
rs1438217518 3460 dbSNP
rs1034897380 3461 dbSNP
rs1244962172 3468 dbSNP
rs1480052029 3470 dbSNP
rs1199598462 3471 dbSNP
rs140374099 3472 dbSNP
rs1476520788 3483 dbSNP
rs886236834 3487 dbSNP
rs1396717435 3493 dbSNP
rs116078101 3497 dbSNP
rs1321959773 3506 dbSNP
rs147855035 3509 dbSNP
rs559648774 3516 dbSNP
rs942990161 3521 dbSNP
rs1244813887 3535 dbSNP
rs567785785 3536 dbSNP
rs6557277 3542 dbSNP
rs1310862200 3543 dbSNP
rs527989133 3554 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aaggugacgauguuggAGGGUCu 5'
                          |||||| 
Target 5' ----------------UCCCAGa 3'
1 - 7
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 HITS-CLIP data was present in GSM1084041. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep1 HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000367339.2 | 3UTR | UCCCAGAGUGCUGGGAUUACAGGCGUGAGCCACCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000367339.2 | 3UTR | CAGAGUGCUGGGAUUACAGGCGUGAGCCACCGCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084041
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep1
Location of target site ENST00000367339.2 | 3UTR | AGAGUGCUGGGAUUACAGGCGUGAGCCACCGCGCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000367339.2 | 3UTR | CAGAGUGCUGGGAUUACAGGCGUGAGCCACCGCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000367339.2 | 3UTR | CAGAGUGCUGGGAUUACAGGCGUGAGCCACCGCGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000367339.2 | 3UTR | AGAGUGCUGGGAUUACAGGCGUGAGCCACCGCGCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
HNSC 0.998 0.02 1.000 0.5 3 Click to see details
167 hsa-miR-3192-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058548 CTTNBP2NL CTTNBP2 N-terminal like 2 2
MIRT139892 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT207395 MAT2A methionine adenosyltransferase 2A 2 6
MIRT294640 ZNF548 zinc finger protein 548 2 2
MIRT324251 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT441475 BEST3 bestrophin 3 2 2
MIRT445233 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT446763 ZNF491 zinc finger protein 491 2 2
MIRT451003 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 2
MIRT452436 QDPR quinoid dihydropteridine reductase 2 2
MIRT452582 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452950 DISC1 disrupted in schizophrenia 1 2 2
MIRT453309 ZNF394 zinc finger protein 394 2 2
MIRT453810 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT454101 TMEM209 transmembrane protein 209 2 2
MIRT456228 LIX1L limb and CNS expressed 1 like 2 4
MIRT456738 TMEM239 transmembrane protein 239 2 2
MIRT456806 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT457499 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458037 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459041 ZNF490 zinc finger protein 490 2 2
MIRT459135 FADS6 fatty acid desaturase 6 2 2
MIRT460126 CXCL16 C-X-C motif chemokine ligand 16 2 2
MIRT460506 FAM105A family with sequence similarity 105 member A 2 6
MIRT460944 NOA1 nitric oxide associated 1 2 4
MIRT461101 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462641 PHF5A PHD finger protein 5A 2 2
MIRT463584 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT466567 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467090 SRRD SRR1 domain containing 2 2
MIRT471093 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472596 NACC1 nucleus accumbens associated 1 2 2
MIRT473084 MORN4 MORN repeat containing 4 2 2
MIRT475977 GTPBP2 GTP binding protein 2 2 2
MIRT477054 FAM210A family with sequence similarity 210 member A 2 2
MIRT478303 DDX19A DEAD-box helicase 19A 2 4
MIRT478489 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478500 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT478858 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479096 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT479180 CLSPN claspin 2 2
MIRT479215 CLCC1 chloride channel CLIC like 1 2 2
MIRT481176 AVL9 AVL9 cell migration associated 2 6
MIRT483032 KHSRP KH-type splicing regulatory protein 2 4
MIRT485150 RASL10B RAS like family 10 member B 2 2
MIRT486104 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486319 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT489443 IFNLR1 interferon lambda receptor 1 2 2
MIRT489585 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489702 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490184 TMEM63C transmembrane protein 63C 2 2
MIRT491211 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491276 DHX40 DEAH-box helicase 40 2 2
MIRT495162 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495222 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT496820 CHRNB2 cholinergic receptor nicotinic beta 2 subunit 2 2
MIRT498602 KRT8 keratin 8 2 2
MIRT500003 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT502065 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT508197 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508477 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT509635 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT511039 NRF1 nuclear respiratory factor 1 2 2
MIRT516684 ZNF860 zinc finger protein 860 2 4
MIRT518394 ZNF250 zinc finger protein 250 2 2
MIRT518907 CDC14B cell division cycle 14B 2 2
MIRT520502 TRAM2 translocation associated membrane protein 2 2 6
MIRT521459 RAD51 RAD51 recombinase 2 2
MIRT522354 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT522594 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT523267 HIST1H2AE histone cluster 1 H2A family member e 2 2
MIRT523532 GLUL glutamate-ammonia ligase 2 4
MIRT524186 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT526842 PHC1 polyhomeotic homolog 1 2 2
MIRT528729 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT540695 BMP3 bone morphogenetic protein 3 2 2
MIRT544483 TRIM4 tripartite motif containing 4 2 2
MIRT551566 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT563619 ZNF277 zinc finger protein 277 2 2
MIRT564467 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565031 VAV2 vav guanine nucleotide exchange factor 2 2 2
MIRT570294 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT572932 VDAC2 voltage dependent anion channel 2 2 2
MIRT573501 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573675 HES6 hes family bHLH transcription factor 6 2 2
MIRT609619 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT611966 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613930 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT617733 ATCAY ATCAY, caytaxin 2 4
MIRT618878 MBL2 mannose binding lectin 2 2 2
MIRT627590 SHROOM3 shroom family member 3 2 2
MIRT628516 ZNF878 zinc finger protein 878 2 2
MIRT633964 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634530 NEGR1 neuronal growth regulator 1 2 2
MIRT635455 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT636412 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT639672 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642667 RGS6 regulator of G protein signaling 6 2 2
MIRT644080 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT647318 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647942 RNF152 ring finger protein 152 2 2
MIRT648687 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT648817 ZNF689 zinc finger protein 689 2 2
MIRT650347 TREM1 triggering receptor expressed on myeloid cells 1 2 2
MIRT650374 MOCS3 molybdenum cofactor synthesis 3 2 4
MIRT655935 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT663778 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT664297 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT665842 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT668929 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669673 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669907 KIAA0754 KIAA0754 2 4
MIRT670248 TRIM13 tripartite motif containing 13 2 2
MIRT670368 ULBP3 UL16 binding protein 3 2 4
MIRT670642 BVES blood vessel epicardial substance 2 2
MIRT670749 HOOK3 hook microtubule tethering protein 3 2 2
MIRT671184 ZNF891 zinc finger protein 891 2 2
MIRT673946 ZNF500 zinc finger protein 500 2 2
MIRT674682 PLCE1 phospholipase C epsilon 1 2 2
MIRT677912 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678876 FAM118A family with sequence similarity 118 member A 2 2
MIRT679528 RAB36 RAB36, member RAS oncogene family 2 2
MIRT680589 ZNF573 zinc finger protein 573 2 2
MIRT680650 KIAA1456 KIAA1456 2 2
MIRT681149 INTS7 integrator complex subunit 7 2 2
MIRT681177 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681234 DUSP19 dual specificity phosphatase 19 2 2
MIRT681626 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681643 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT681926 KAT7 lysine acetyltransferase 7 2 2
MIRT682050 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682156 SMS spermine synthase 2 2
MIRT683555 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684304 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT684458 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT685986 CCDC77 coiled-coil domain containing 77 2 2
MIRT686782 AZF1 azoospermia factor 1 2 2
MIRT687329 OSMR oncostatin M receptor 2 2
MIRT687629 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT688792 CCNB1 cyclin B1 2 2
MIRT689756 PRR13 proline rich 13 2 2
MIRT690823 SGSM2 small G protein signaling modulator 2 2 2
MIRT691310 ZNF681 zinc finger protein 681 2 2
MIRT692676 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT693508 MOB3A MOB kinase activator 3A 2 2
MIRT694657 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694889 ZNF417 zinc finger protein 417 2 2
MIRT695740 ZNF117 zinc finger protein 117 2 2
MIRT697101 GPKOW G-patch domain and KOW motifs 2 2
MIRT698968 SPAST spastin 2 2
MIRT700379 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT703930 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT706234 SYT15 synaptotagmin 15 2 2
MIRT706494 SEPT6 septin 6 2 2
MIRT710451 BTNL3 butyrophilin like 3 2 2
MIRT711684 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT711997 F9 coagulation factor IX 2 2
MIRT712727 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713111 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT713156 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT713440 AJAP1 adherens junctions associated protein 1 2 2
MIRT713830 NUP98 nucleoporin 98 2 2
MIRT714979 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717411 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT718433 ZNF85 zinc finger protein 85 2 2
MIRT720575 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT725098 TMEM120B transmembrane protein 120B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3192 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3192 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3192 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3192-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3192-5p Platinum 23939 resistant tissue
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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