pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RSBN1L   
Synonyms -
Description round spermatid basic protein 1 like
Transcript NM_198467   
Expression
Putative miRNA Targets on RSBN1L
3'UTR of RSBN1L
(miRNA target sites are highlighted)
>RSBN1L|NM_198467|3'UTR
   1 ATTTGCATATACCATCTAAAATCCTTTTTTAAAAAAATTTAATGTAATAAAGATTCATGAATTCTGAAAGCAAGCCAAGG
  81 ACTTGCTCCTATGTCTGTTACAAAACATAGTTTATGTAGCTTTGTAACATTCCTCAGTGCCTGTCCATAACTGTGAAGTA
 161 TTAAGCACTTAGGGCCAGATGCACTGTAAACATTGCAGGTTTAAACATAAAGGAGTCTTTAAAAAAAAATCATTTACGTT
 241 GGAATTTTAGGTTTTAGAATAGAGCTGACATTAACATATATATATATATATAAATATATATATATATTTTGTAATATGAG
 321 CCAGAATTCTTTTTCAACAATTTAAAGCTTTTCCATAGAGCTTATTTATATCCTTTTTTTTCATTTTAAATGTGTCAGCA
 401 CTGTAGTGTAAATAGCTTTTAAATATCTTTTTAGTGTGATTTATACTGAAATGTGAGCCACTTAATAAAGGTTCATATGT
 481 TCATATTAATAAATATGTTTTCTGTTGAGTCTGTAAAGACAAACTGACAATTCATTTAAGTCATTTGATAATGATTCTCT
 561 GCTGGTATATCTATTTAGTGTGGTATTGTAGTGCAAATGTACGTAATTCAAATCTAGTAAATATTTAAGTTCCTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucucgUUCUGGGGCAGAGAUUu 5'
               |:||    ||||:||| 
Target 5' cataaAGGA----GTCTTTAAa 3'
206 - 223 131.00 -10.30
2
miRNA  3' ucucGUUCUGGGGCAGAGAUUu 5'
              :|| |:||: |:|:||| 
Target 5' catcTAAAATCCT-TTTTTAAa 3'
13 - 33 125.00 -7.40
3
miRNA  3' ucucguucuggggCAGAGAUUu 5'
                       |||| ||| 
Target 5' tgttttctgttgaGTCTGTAAa 3'
496 - 517 113.00 -6.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30454115 25 COSMIC
COSN14303499 32 COSMIC
COSN28889768 38 COSMIC
COSN26481390 221 COSMIC
COSN30509869 290 COSMIC
COSN23987825 292 COSMIC
COSN28728853 294 COSMIC
COSN31590002 382 COSMIC
COSN30161099 383 COSMIC
COSN26639415 435 COSMIC
COSN27023193 537 COSMIC
COSN19662751 649 COSMIC
COSN27358926 663 COSMIC
COSN18813186 664 COSMIC
COSN8039895 672 COSMIC
COSN28122807 1066 COSMIC
COSN8039896 1245 COSMIC
COSN2235228 1587 COSMIC
COSN32202208 1917 COSMIC
COSN15749166 2013 COSMIC
COSN20135619 2223 COSMIC
COSN2235229 2335 COSMIC
COSN9509745 2434 COSMIC
COSN20558820 2645 COSMIC
COSN2524015 2679 COSMIC
COSN22160037 2769 COSMIC
COSN8805164 3061 COSMIC
COSN17266795 3097 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs560916107 4 dbSNP
rs1285693741 6 dbSNP
rs1477032775 9 dbSNP
rs749053095 13 dbSNP
rs770636180 15 dbSNP
rs1430472712 17 dbSNP
rs1334682056 19 dbSNP
rs1162778559 23 dbSNP
rs923876831 24 dbSNP
rs763715953 25 dbSNP
rs774268051 28 dbSNP
rs751070297 31 dbSNP
rs759174025 31 dbSNP
rs1367259612 32 dbSNP
rs767199872 36 dbSNP
rs774943664 39 dbSNP
rs192683647 40 dbSNP
rs756971885 40 dbSNP
rs183913435 42 dbSNP
rs754309495 43 dbSNP
rs567388106 44 dbSNP
rs1450654937 45 dbSNP
rs1248052462 47 dbSNP
rs765509092 50 dbSNP
rs1336965192 51 dbSNP
rs750869582 52 dbSNP
rs1291640929 60 dbSNP
rs1049724333 67 dbSNP
rs1358548174 69 dbSNP
rs757579969 74 dbSNP
rs1312645808 83 dbSNP
rs967138781 89 dbSNP
rs1479583254 90 dbSNP
rs781433610 92 dbSNP
rs1428783643 111 dbSNP
rs941400070 114 dbSNP
rs1038601091 117 dbSNP
rs897431508 121 dbSNP
rs1324538135 130 dbSNP
rs922915321 137 dbSNP
rs1364041295 140 dbSNP
rs932998642 144 dbSNP
rs1050605405 148 dbSNP
rs910810160 152 dbSNP
rs1174519488 157 dbSNP
rs1428730694 158 dbSNP
rs1248089521 159 dbSNP
rs1199047777 161 dbSNP
rs188584573 167 dbSNP
rs1037867789 173 dbSNP
rs1207070816 175 dbSNP
rs755726921 182 dbSNP
rs550142833 187 dbSNP
rs993579351 200 dbSNP
rs1046936491 209 dbSNP
rs1373899790 218 dbSNP
rs1353284483 221 dbSNP
rs906505046 221 dbSNP
rs1442032277 232 dbSNP
rs1002207793 234 dbSNP
rs1011941728 235 dbSNP
rs1023379047 238 dbSNP
rs1033719380 239 dbSNP
rs1280941764 240 dbSNP
rs1169040643 241 dbSNP
rs903499181 252 dbSNP
rs1011935984 255 dbSNP
rs1172675334 255 dbSNP
rs1000967877 264 dbSNP
rs79362753 265 dbSNP
rs10569815 276 dbSNP
rs1279376056 276 dbSNP
rs1483300729 276 dbSNP
rs532817203 276 dbSNP
rs71941205 276 dbSNP
rs1223029143 278 dbSNP
rs956855132 280 dbSNP
rs1280039914 289 dbSNP
rs1290505241 290 dbSNP
rs1321649245 290 dbSNP
rs1305726536 291 dbSNP
rs377459108 291 dbSNP
rs1491047980 292 dbSNP
rs4729743 292 dbSNP
rs1296823044 294 dbSNP
rs4729744 294 dbSNP
rs923034795 294 dbSNP
rs1468877311 296 dbSNP
rs953228103 296 dbSNP
rs1426768493 305 dbSNP
rs954342487 307 dbSNP
rs985540832 309 dbSNP
rs1481474565 312 dbSNP
rs985758091 318 dbSNP
rs911335046 321 dbSNP
rs941359813 325 dbSNP
rs1175297749 338 dbSNP
rs1484177640 341 dbSNP
rs974495760 343 dbSNP
rs1238032505 360 dbSNP
rs1197620040 372 dbSNP
rs1453289834 374 dbSNP
rs201513493 374 dbSNP
rs1268430391 377 dbSNP
rs1229182328 382 dbSNP
rs1316574182 382 dbSNP
rs1480854471 383 dbSNP
rs1201692238 384 dbSNP
rs1305253759 390 dbSNP
rs1380496960 391 dbSNP
rs910253378 391 dbSNP
rs918805311 393 dbSNP
rs930226380 399 dbSNP
rs974088611 403 dbSNP
rs1171712508 408 dbSNP
rs1356688907 409 dbSNP
rs1056674781 410 dbSNP
rs929478936 411 dbSNP
rs896654579 414 dbSNP
rs1182838695 423 dbSNP
rs1405132057 428 dbSNP
rs948246130 430 dbSNP
rs1044778688 435 dbSNP
rs1359225352 439 dbSNP
rs749145475 449 dbSNP
rs1000513712 462 dbSNP
rs1031086743 476 dbSNP
rs1224218496 478 dbSNP
rs539012258 480 dbSNP
rs997427117 481 dbSNP
rs1273622523 483 dbSNP
rs1055115909 485 dbSNP
rs1219993684 486 dbSNP
rs780817763 487 dbSNP
rs1244356675 488 dbSNP
rs1011467569 491 dbSNP
rs1299145668 492 dbSNP
rs1490584264 494 dbSNP
rs1223993780 500 dbSNP
rs1021972004 505 dbSNP
rs1286823542 515 dbSNP
rs562827462 529 dbSNP
rs1030293649 534 dbSNP
rs1162715833 553 dbSNP
rs953174547 555 dbSNP
rs1422623410 556 dbSNP
rs985992478 556 dbSNP
rs559161090 567 dbSNP
rs1391991818 568 dbSNP
rs1187688446 572 dbSNP
rs1018333864 574 dbSNP
rs1193078390 577 dbSNP
rs1488943144 579 dbSNP
rs1443248251 583 dbSNP
rs535936378 584 dbSNP
rs1163374321 587 dbSNP
rs1276052544 589 dbSNP
rs1366529220 589 dbSNP
rs1227516691 592 dbSNP
rs1306343371 600 dbSNP
rs974065092 602 dbSNP
rs918573445 603 dbSNP
rs1030162253 604 dbSNP
rs1345782053 609 dbSNP
rs930030647 610 dbSNP
rs992350938 617 dbSNP
rs1402923482 620 dbSNP
rs985873353 622 dbSNP
rs1017205272 624 dbSNP
rs1461434054 624 dbSNP
rs1268515391 625 dbSNP
rs963392986 625 dbSNP
rs1367274201 626 dbSNP
rs1243630456 628 dbSNP
rs1314141430 630 dbSNP
rs1484280722 635 dbSNP
rs918196553 639 dbSNP
rs1323777422 649 dbSNP
rs1338577168 649 dbSNP
rs750541557 649 dbSNP
rs1211903343 650 dbSNP
rs1282303601 656 dbSNP
rs973652887 656 dbSNP
rs948193840 657 dbSNP
rs1329320819 663 dbSNP
rs375280134 663 dbSNP
rs112435467 664 dbSNP
rs919511692 664 dbSNP
rs1045228018 669 dbSNP
rs1216591503 671 dbSNP
rs35747073 672 dbSNP
rs907923281 672 dbSNP
rs929612899 672 dbSNP
rs1249931706 675 dbSNP
rs1460386679 676 dbSNP
rs74435335 680 dbSNP
rs1183491803 681 dbSNP
rs1386289411 683 dbSNP
rs1446817355 684 dbSNP
rs1364688865 685 dbSNP
rs1164692841 686 dbSNP
rs928146126 687 dbSNP
rs1399690009 688 dbSNP
rs1205000403 692 dbSNP
rs1318445621 693 dbSNP
rs1390142692 694 dbSNP
rs1450427830 698 dbSNP
rs1261969794 699 dbSNP
rs577724478 707 dbSNP
rs1228471395 715 dbSNP
rs1383346056 722 dbSNP
rs1246705267 723 dbSNP
rs1055231828 724 dbSNP
rs1333898243 725 dbSNP
rs533738202 730 dbSNP
rs1052219546 731 dbSNP
rs1042942486 734 dbSNP
rs892106097 742 dbSNP
rs1385992605 748 dbSNP
rs997221337 754 dbSNP
rs998765010 755 dbSNP
rs139185580 757 dbSNP
rs573806211 766 dbSNP
rs1444587918 776 dbSNP
rs1007241049 782 dbSNP
rs1201274629 787 dbSNP
rs1270146895 789 dbSNP
rs1017786593 805 dbSNP
rs1348198095 808 dbSNP
rs1007358388 811 dbSNP
rs527715285 812 dbSNP
rs1246558050 813 dbSNP
rs963273807 815 dbSNP
rs748790747 817 dbSNP
rs542689339 818 dbSNP
rs1312968482 819 dbSNP
rs1203658631 822 dbSNP
rs1437427419 823 dbSNP
rs1327234333 825 dbSNP
rs562579899 827 dbSNP
rs1244276979 832 dbSNP
rs995980188 837 dbSNP
rs1399178533 846 dbSNP
rs963043092 852 dbSNP
rs1232627557 860 dbSNP
rs1025768031 865 dbSNP
rs1469332031 867 dbSNP
rs768327187 869 dbSNP
rs181338200 870 dbSNP
rs1413587697 876 dbSNP
rs554606186 877 dbSNP
rs1476148870 880 dbSNP
rs1467773883 897 dbSNP
rs28716648 898 dbSNP
rs969630750 899 dbSNP
rs1191956971 905 dbSNP
rs980934231 906 dbSNP
rs925429648 910 dbSNP
rs1326628442 911 dbSNP
rs1334923815 916 dbSNP
rs1358611768 917 dbSNP
rs1443253055 919 dbSNP
rs1290438487 922 dbSNP
rs1289578022 926 dbSNP
rs928092164 933 dbSNP
rs771846410 937 dbSNP
rs1269685624 940 dbSNP
rs1263762725 942 dbSNP
rs1052610875 948 dbSNP
rs1194536967 952 dbSNP
rs913684582 954 dbSNP
rs62460740 955 dbSNP
rs760589048 959 dbSNP
rs889010263 962 dbSNP
rs1042776120 968 dbSNP
rs923996760 969 dbSNP
rs934562889 971 dbSNP
rs1199859801 982 dbSNP
rs150832212 984 dbSNP
rs1037650847 988 dbSNP
rs547415950 990 dbSNP
rs890258158 991 dbSNP
rs184391370 992 dbSNP
rs1467563962 995 dbSNP
rs1272338863 999 dbSNP
rs530175224 1007 dbSNP
rs1395589588 1009 dbSNP
rs1325910549 1010 dbSNP
rs993380743 1013 dbSNP
rs1026117111 1014 dbSNP
rs1300292329 1024 dbSNP
rs1443514709 1024 dbSNP
rs1354507946 1026 dbSNP
rs1327572279 1028 dbSNP
rs994623536 1028 dbSNP
rs1430967893 1030 dbSNP
rs1026381754 1032 dbSNP
rs1479912650 1036 dbSNP
rs1343878887 1037 dbSNP
rs1178772086 1038 dbSNP
rs1470460130 1038 dbSNP
rs950380453 1038 dbSNP
rs951469423 1038 dbSNP
rs1404527891 1040 dbSNP
rs1284028040 1044 dbSNP
rs28605882 1057 dbSNP
rs1263853515 1058 dbSNP
rs1035277023 1060 dbSNP
rs538830667 1073 dbSNP
rs1321714544 1079 dbSNP
rs1309559078 1081 dbSNP
rs1224733414 1083 dbSNP
rs1373226211 1088 dbSNP
rs1024945075 1090 dbSNP
rs1455057727 1094 dbSNP
rs969389619 1097 dbSNP
rs1407580061 1101 dbSNP
rs981411905 1102 dbSNP
rs12667175 1106 dbSNP
rs1468928565 1108 dbSNP
rs1403510250 1109 dbSNP
rs1161005402 1129 dbSNP
rs190263098 1133 dbSNP
rs1175355065 1143 dbSNP
rs1270127999 1144 dbSNP
rs988332784 1151 dbSNP
rs1340579208 1152 dbSNP
rs1207763385 1161 dbSNP
rs1289990415 1163 dbSNP
rs990984754 1165 dbSNP
rs1262772085 1169 dbSNP
rs913613108 1174 dbSNP
rs933072654 1176 dbSNP
rs915448202 1178 dbSNP
rs539184230 1190 dbSNP
rs138314360 1203 dbSNP
rs1248742548 1206 dbSNP
rs1384221947 1211 dbSNP
rs1451357241 1226 dbSNP
rs910203754 1226 dbSNP
rs1376512862 1235 dbSNP
rs943091264 1240 dbSNP
rs1038016040 1245 dbSNP
rs1434390359 1248 dbSNP
rs899090900 1253 dbSNP
rs1426443445 1258 dbSNP
rs923913999 1263 dbSNP
rs934007043 1267 dbSNP
rs929093297 1268 dbSNP
rs752014284 1271 dbSNP
rs911813813 1272 dbSNP
rs1047575845 1278 dbSNP
rs887164435 1282 dbSNP
rs1187272818 1284 dbSNP
rs1485677892 1287 dbSNP
rs762320118 1288 dbSNP
rs943323222 1289 dbSNP
rs1170288099 1290 dbSNP
rs1244431384 1293 dbSNP
rs1039265039 1297 dbSNP
rs1363430956 1303 dbSNP
rs899021967 1310 dbSNP
rs1382400534 1313 dbSNP
rs1360892259 1315 dbSNP
rs1406601351 1318 dbSNP
rs994971770 1318 dbSNP
rs1047485390 1321 dbSNP
rs1013610555 1322 dbSNP
rs886069792 1323 dbSNP
rs1456341589 1324 dbSNP
rs1025038229 1327 dbSNP
rs1294310809 1328 dbSNP
rs905199666 1329 dbSNP
rs1002242725 1334 dbSNP
rs566350644 1337 dbSNP
rs1032971613 1354 dbSNP
rs958315982 1359 dbSNP
rs988690317 1361 dbSNP
rs75112012 1364 dbSNP
rs1294880028 1370 dbSNP
rs1327538618 1376 dbSNP
rs773370306 1387 dbSNP
rs1313432714 1394 dbSNP
rs553834215 1399 dbSNP
rs573668503 1403 dbSNP
rs910339558 1405 dbSNP
rs1489223837 1413 dbSNP
rs1012531361 1414 dbSNP
rs1398596196 1416 dbSNP
rs942996989 1422 dbSNP
rs575697254 1423 dbSNP
rs1022870480 1426 dbSNP
rs973096226 1429 dbSNP
rs756557773 1431 dbSNP
rs968265722 1441 dbSNP
rs929252891 1444 dbSNP
rs1197251314 1446 dbSNP
rs1047667255 1447 dbSNP
rs895633759 1449 dbSNP
rs1195864812 1451 dbSNP
rs377525452 1456 dbSNP
rs1255619268 1458 dbSNP
rs779547296 1460 dbSNP
rs949925823 1465 dbSNP
rs1205116283 1467 dbSNP
rs536007203 1469 dbSNP
rs1165828033 1475 dbSNP
rs1370435581 1492 dbSNP
rs1230856961 1497 dbSNP
rs1337459991 1506 dbSNP
rs1046455520 1510 dbSNP
rs911250367 1513 dbSNP
rs905292903 1514 dbSNP
rs1002573988 1519 dbSNP
rs1288382920 1522 dbSNP
rs1389437208 1523 dbSNP
rs1437948175 1530 dbSNP
rs974705633 1536 dbSNP
rs1405696020 1539 dbSNP
rs1452486039 1541 dbSNP
rs181916986 1544 dbSNP
rs576165333 1546 dbSNP
rs1364738700 1555 dbSNP
rs1396986106 1559 dbSNP
rs112714119 1567 dbSNP
rs1235783874 1570 dbSNP
rs1009805945 1579 dbSNP
rs886185996 1580 dbSNP
rs1205429295 1581 dbSNP
rs1021258662 1595 dbSNP
rs939115578 1597 dbSNP
rs1352505087 1599 dbSNP
rs542672452 1610 dbSNP
rs954853361 1616 dbSNP
rs558447387 1617 dbSNP
rs1329203978 1632 dbSNP
rs35007587 1638 dbSNP
rs754495918 1639 dbSNP
rs540918002 1650 dbSNP
rs1332358117 1652 dbSNP
rs964513049 1655 dbSNP
rs1158381125 1662 dbSNP
rs778584909 1668 dbSNP
rs534329398 1673 dbSNP
rs1177939728 1678 dbSNP
rs1182241408 1682 dbSNP
rs903986482 1684 dbSNP
rs973450363 1688 dbSNP
rs920261749 1693 dbSNP
rs1448402144 1711 dbSNP
rs1262133189 1712 dbSNP
rs1031168927 1716 dbSNP
rs1351407350 1722 dbSNP
rs955443573 1724 dbSNP
rs986869439 1726 dbSNP
rs187360057 1729 dbSNP
rs1229831605 1730 dbSNP
rs1018206774 1736 dbSNP
rs1458874841 1743 dbSNP
rs964089962 1748 dbSNP
rs983329541 1751 dbSNP
rs1367997309 1753 dbSNP
rs1343403498 1759 dbSNP
rs1304222999 1761 dbSNP
rs917197710 1761 dbSNP
rs1412395513 1762 dbSNP
rs192081214 1763 dbSNP
rs771187507 1764 dbSNP
rs543563868 1775 dbSNP
rs563771202 1776 dbSNP
rs773888796 1777 dbSNP
rs180766794 1779 dbSNP
rs926674728 1781 dbSNP
rs938120234 1782 dbSNP
rs1223065655 1790 dbSNP
rs1450994011 1791 dbSNP
rs554509464 1792 dbSNP
rs1216451778 1794 dbSNP
rs907740608 1798 dbSNP
rs552763311 1800 dbSNP
rs939066505 1801 dbSNP
rs1056246208 1807 dbSNP
rs1404847362 1812 dbSNP
rs1350644213 1813 dbSNP
rs374985456 1817 dbSNP
rs947753850 1818 dbSNP
rs1396604548 1826 dbSNP
rs6954671 1830 dbSNP
rs904103177 1837 dbSNP
rs1009607580 1839 dbSNP
rs1042630679 1840 dbSNP
rs1311551482 1848 dbSNP
rs1477643421 1850 dbSNP
rs185168444 1860 dbSNP
rs775418119 1866 dbSNP
rs1438401520 1880 dbSNP
rs1257529895 1884 dbSNP
rs189973178 1900 dbSNP
rs1017800977 1901 dbSNP
rs1176912311 1909 dbSNP
rs746762534 1916 dbSNP
rs1219070743 1917 dbSNP
rs1366110564 1929 dbSNP
rs1281719585 1932 dbSNP
rs1443586877 1936 dbSNP
rs1376926933 1943 dbSNP
rs994577602 1948 dbSNP
rs1330127425 1952 dbSNP
rs1463703291 1966 dbSNP
rs1473663164 1968 dbSNP
rs182562112 1971 dbSNP
rs1413763539 1977 dbSNP
rs74874751 1979 dbSNP
rs983086027 1980 dbSNP
rs1470490312 1987 dbSNP
rs1237609757 1992 dbSNP
rs1176907472 1994 dbSNP
rs1462817525 2001 dbSNP
rs1178840534 2005 dbSNP
rs917123885 2016 dbSNP
rs1264063615 2017 dbSNP
rs775662703 2026 dbSNP
rs1209692924 2032 dbSNP
rs1310755272 2035 dbSNP
rs1281167182 2037 dbSNP
rs1224783077 2041 dbSNP
rs1353667054 2043 dbSNP
rs1027433249 2052 dbSNP
rs1384535611 2060 dbSNP
rs1444008748 2060 dbSNP
rs556000574 2061 dbSNP
rs149645228 2081 dbSNP
rs927133555 2083 dbSNP
rs1161072417 2087 dbSNP
rs935874308 2090 dbSNP
rs907688364 2095 dbSNP
rs1053869708 2100 dbSNP
rs1308941941 2102 dbSNP
rs1156930781 2106 dbSNP
rs1370797454 2108 dbSNP
rs1243842626 2112 dbSNP
rs763186736 2120 dbSNP
rs1411219039 2122 dbSNP
rs960544913 2124 dbSNP
rs991874921 2125 dbSNP
rs916336609 2128 dbSNP
rs915321138 2129 dbSNP
rs763539432 2138 dbSNP
rs1284590278 2147 dbSNP
rs1280842081 2154 dbSNP
rs1366267038 2157 dbSNP
rs1360903916 2159 dbSNP
rs947836904 2164 dbSNP
rs17157768 2168 dbSNP
rs924963671 2175 dbSNP
rs1290401295 2189 dbSNP
rs1359671667 2197 dbSNP
rs1400457338 2197 dbSNP
rs1042431839 2204 dbSNP
rs1296209290 2210 dbSNP
rs935572882 2219 dbSNP
rs1369086986 2225 dbSNP
rs1164217234 2226 dbSNP
rs774417166 2239 dbSNP
rs890683467 2244 dbSNP
rs1204195825 2246 dbSNP
rs1421986865 2259 dbSNP
rs1275028144 2260 dbSNP
rs1187469893 2262 dbSNP
rs144317452 2273 dbSNP
rs1261497572 2276 dbSNP
rs577145213 2288 dbSNP
rs1265493153 2292 dbSNP
rs762019522 2292 dbSNP
rs1008350784 2300 dbSNP
rs1319546566 2306 dbSNP
rs1297191518 2308 dbSNP
rs1268330567 2310 dbSNP
rs1218874607 2319 dbSNP
rs571908364 2329 dbSNP
rs1039717378 2331 dbSNP
rs900666555 2341 dbSNP
rs1276101273 2349 dbSNP
rs1406668010 2359 dbSNP
rs117562037 2363 dbSNP
rs1293005632 2370 dbSNP
rs1456516908 2373 dbSNP
rs1027372285 2384 dbSNP
rs749990927 2388 dbSNP
rs996023800 2390 dbSNP
rs1026970751 2392 dbSNP
rs577175743 2396 dbSNP
rs186545071 2402 dbSNP
rs1267345724 2427 dbSNP
rs1189984696 2434 dbSNP
rs1417993656 2442 dbSNP
rs1428378102 2449 dbSNP
rs1487184462 2452 dbSNP
rs1252573551 2460 dbSNP
rs1198837987 2464 dbSNP
rs1316969141 2467 dbSNP
rs1004776737 2468 dbSNP
rs1004479254 2472 dbSNP
rs191828064 2473 dbSNP
rs1023936889 2478 dbSNP
rs750984574 2479 dbSNP
rs1375563071 2490 dbSNP
rs916435542 2495 dbSNP
rs183595774 2503 dbSNP
rs979968914 2521 dbSNP
rs924943559 2527 dbSNP
rs568910602 2529 dbSNP
rs957195884 2530 dbSNP
rs766796181 2533 dbSNP
rs990394219 2535 dbSNP
rs563515264 2536 dbSNP
rs1436582471 2539 dbSNP
rs915307622 2540 dbSNP
rs1039858414 2545 dbSNP
rs1205181966 2551 dbSNP
rs1345385315 2555 dbSNP
rs1255217903 2567 dbSNP
rs1230926601 2568 dbSNP
rs945457534 2575 dbSNP
rs1318699877 2582 dbSNP
rs978202005 2583 dbSNP
rs1344012543 2584 dbSNP
rs1244130700 2588 dbSNP
rs536353827 2589 dbSNP
rs944728243 2592 dbSNP
rs1223878499 2593 dbSNP
rs1039279394 2599 dbSNP
rs900758562 2600 dbSNP
rs1052623519 2604 dbSNP
rs1464863302 2609 dbSNP
rs1189735848 2618 dbSNP
rs1438473251 2620 dbSNP
rs1377964367 2625 dbSNP
rs1189135331 2626 dbSNP
rs1442675012 2632 dbSNP
rs930787965 2633 dbSNP
rs1049711983 2635 dbSNP
rs887083898 2638 dbSNP
rs886159115 2642 dbSNP
rs375688580 2644 dbSNP
rs1024030041 2646 dbSNP
rs906872525 2651 dbSNP
rs1001618556 2658 dbSNP
rs1013539204 2660 dbSNP
rs1332599105 2661 dbSNP
rs372972148 2661 dbSNP
rs1384346711 2666 dbSNP
rs546307156 2670 dbSNP
rs969639395 2676 dbSNP
rs957537362 2677 dbSNP
rs1358029354 2678 dbSNP
rs1321123942 2679 dbSNP
rs1268507992 2683 dbSNP
rs1480867784 2686 dbSNP
rs753489803 2687 dbSNP
rs1184965452 2688 dbSNP
rs370578924 2690 dbSNP
rs1367177760 2691 dbSNP
rs1215752903 2693 dbSNP
rs1450186899 2700 dbSNP
rs1292081214 2703 dbSNP
rs1210575894 2708 dbSNP
rs979170236 2709 dbSNP
rs565400231 2712 dbSNP
rs1032509094 2715 dbSNP
rs1341467517 2716 dbSNP
rs1283320060 2727 dbSNP
rs1278000895 2728 dbSNP
rs528648254 2730 dbSNP
rs1398660594 2732 dbSNP
rs1368060881 2742 dbSNP
rs548907037 2743 dbSNP
rs188988019 2744 dbSNP
rs1282290551 2750 dbSNP
rs529678814 2753 dbSNP
rs1328564048 2766 dbSNP
rs978169250 2767 dbSNP
rs1476790665 2772 dbSNP
rs193125960 2772 dbSNP
rs373971103 2776 dbSNP
rs569541913 2779 dbSNP
rs1451053204 2781 dbSNP
rs975150840 2782 dbSNP
rs4451239 2783 dbSNP
rs921415329 2787 dbSNP
rs1318924042 2790 dbSNP
rs1257798573 2795 dbSNP
rs527751755 2796 dbSNP
rs1400046030 2797 dbSNP
rs1275900996 2798 dbSNP
rs1480187965 2803 dbSNP
rs1159960599 2804 dbSNP
rs1245025007 2805 dbSNP
rs1414524234 2805 dbSNP
rs1477675556 2805 dbSNP
rs3084596 2805 dbSNP
rs771341775 2805 dbSNP
rs1472945755 2809 dbSNP
rs1183215796 2818 dbSNP
rs1458374271 2818 dbSNP
rs1237725328 2823 dbSNP
rs931482904 2823 dbSNP
rs1405237925 2824 dbSNP
rs1049347145 2825 dbSNP
rs1451921442 2826 dbSNP
rs886589188 2827 dbSNP
rs940900301 2828 dbSNP
rs117626834 2829 dbSNP
rs1390761179 2831 dbSNP
rs113700180 2832 dbSNP
rs906967228 2836 dbSNP
rs1468120372 2840 dbSNP
rs1330204669 2844 dbSNP
rs1001186930 2846 dbSNP
rs182159621 2847 dbSNP
rs1450517870 2858 dbSNP
rs1278004468 2861 dbSNP
rs1423046754 2863 dbSNP
rs1160530251 2864 dbSNP
rs1350036726 2864 dbSNP
rs887187899 2872 dbSNP
rs1379788681 2875 dbSNP
rs561292383 2876 dbSNP
rs1057142657 2883 dbSNP
rs1011891660 2887 dbSNP
rs895844730 2894 dbSNP
rs1322071689 2895 dbSNP
rs368434837 2899 dbSNP
rs1288700324 2900 dbSNP
rs1200356287 2909 dbSNP
rs186835119 2910 dbSNP
rs1221687054 2911 dbSNP
rs1459885786 2912 dbSNP
rs967196421 2913 dbSNP
rs1008071503 2916 dbSNP
rs534478178 2917 dbSNP
rs1373407855 2919 dbSNP
rs1223743088 2922 dbSNP
rs1023981293 2923 dbSNP
rs1249167869 2924 dbSNP
rs1420262103 2932 dbSNP
rs1472026700 2943 dbSNP
rs146209965 2949 dbSNP
rs1413477922 2959 dbSNP
rs1425766540 2962 dbSNP
rs966544693 2966 dbSNP
rs1001104490 2969 dbSNP
rs1414877171 2970 dbSNP
rs1032207419 2973 dbSNP
rs574706859 2978 dbSNP
rs974741415 2980 dbSNP
rs1181498977 2985 dbSNP
rs921913716 2987 dbSNP
rs1402734534 2988 dbSNP
rs1415969918 3000 dbSNP
rs139232997 3001 dbSNP
rs1284661247 3007 dbSNP
rs1370214427 3022 dbSNP
rs191636768 3023 dbSNP
rs530041132 3026 dbSNP
rs940825350 3027 dbSNP
rs1343695287 3036 dbSNP
rs1353286055 3044 dbSNP
rs1233233466 3053 dbSNP
rs577164067 3063 dbSNP
rs777542008 3064 dbSNP
rs546321285 3065 dbSNP
rs975659639 3066 dbSNP
rs928361321 3070 dbSNP
rs116859752 3080 dbSNP
rs1194909980 3083 dbSNP
rs1477773540 3083 dbSNP
rs1055573355 3094 dbSNP
rs1261742885 3099 dbSNP
rs1193431359 3106 dbSNP
rs1482540149 3116 dbSNP
rs573490903 3117 dbSNP
rs1253403075 3119 dbSNP
rs1332287590 3124 dbSNP
rs1011276488 3126 dbSNP
rs1259733944 3128 dbSNP
rs1449359711 3137 dbSNP
rs1317072223 3138 dbSNP
rs908740004 3156 dbSNP
rs1356437088 3160 dbSNP
rs1197471869 3162 dbSNP
rs1041622315 3165 dbSNP
rs1293061637 3167 dbSNP
rs1438960738 3171 dbSNP
rs1402803464 3180 dbSNP
rs1171827009 3181 dbSNP
rs1465372088 3186 dbSNP
rs940070090 3194 dbSNP
rs200852510 3195 dbSNP
rs1434290164 3203 dbSNP
rs138378738 3205 dbSNP
rs1466853092 3207 dbSNP
rs1166519482 3211 dbSNP
rs948731261 3213 dbSNP
rs1457118096 3218 dbSNP
rs1430701757 3233 dbSNP
rs1249438052 3236 dbSNP
rs1310072208 3237 dbSNP
rs1388751392 3239 dbSNP
rs903104030 3241 dbSNP
rs3814468 3242 dbSNP
rs184175552 3248 dbSNP
rs1379218461 3251 dbSNP
rs1332230825 3253 dbSNP
rs963938873 3259 dbSNP
rs1225819252 3267 dbSNP
rs996644481 3269 dbSNP
rs1000817857 3270 dbSNP
rs1053531010 3275 dbSNP
rs780979837 3277 dbSNP
rs1297374074 3289 dbSNP
rs1009243290 3290 dbSNP
rs118108097 3292 dbSNP
rs1381644809 3303 dbSNP
rs1178825968 3304 dbSNP
rs984761149 3310 dbSNP
rs908114042 3318 dbSNP
rs964975940 3320 dbSNP
rs531277413 3335 dbSNP
rs962284967 3345 dbSNP
rs768859016 3349 dbSNP
rs550989701 3353 dbSNP
rs1355884727 3355 dbSNP
rs1487270434 3360 dbSNP
rs937563601 3373 dbSNP
rs1239663914 3374 dbSNP
rs1334262767 3377 dbSNP
rs1315265543 3378 dbSNP
rs1396903596 3380 dbSNP
rs777350568 3384 dbSNP
rs774614535 3389 dbSNP
rs1208749650 3397 dbSNP
rs189768502 3398 dbSNP
rs748154472 3400 dbSNP
rs984415217 3407 dbSNP
rs1361865861 3410 dbSNP
rs908687812 3414 dbSNP
rs1186573484 3432 dbSNP
rs1469300327 3433 dbSNP
rs961543898 3437 dbSNP
rs1189196373 3439 dbSNP
rs992871582 3440 dbSNP
rs1256571657 3441 dbSNP
rs772230696 3454 dbSNP
rs1449842730 3464 dbSNP
rs531942626 3468 dbSNP
rs868697640 3469 dbSNP
rs1366949720 3471 dbSNP
rs1457549739 3477 dbSNP
rs1044777943 3479 dbSNP
rs773547830 3485 dbSNP
rs1245823386 3487 dbSNP
rs1340201805 3492 dbSNP
rs903072953 3499 dbSNP
rs1008133488 3509 dbSNP
rs193082394 3510 dbSNP
rs1053642256 3516 dbSNP
rs1320454741 3522 dbSNP
rs185283897 3536 dbSNP
rs996724461 3540 dbSNP
rs1458124926 3542 dbSNP
rs534393713 3547 dbSNP
rs1263729304 3549 dbSNP
rs141268513 3549 dbSNP
rs150984783 3549 dbSNP
rs1445300907 3558 dbSNP
rs1210624460 3559 dbSNP
rs1313316157 3566 dbSNP
rs1271648794 3567 dbSNP
rs548018042 3569 dbSNP
rs568150176 3572 dbSNP
rs900911019 3574 dbSNP
rs996639917 3579 dbSNP
rs537396122 3587 dbSNP
rs1243578502 3594 dbSNP
rs142499117 3595 dbSNP
rs1357837313 3616 dbSNP
rs577176411 3624 dbSNP
rs1267433562 3626 dbSNP
rs879544736 3632 dbSNP
rs539808430 3634 dbSNP
rs961659428 3636 dbSNP
rs1167216113 3637 dbSNP
rs1474407691 3638 dbSNP
rs752391411 3641 dbSNP
rs1199748304 3650 dbSNP
rs917450636 3651 dbSNP
rs1251304759 3658 dbSNP
rs1217053710 3661 dbSNP
rs962043970 3666 dbSNP
rs981657280 3671 dbSNP
rs1200773091 3679 dbSNP
rs3186580 3688 dbSNP
rs970528714 3690 dbSNP
rs980228282 3691 dbSNP
rs190523136 3694 dbSNP
rs1370327412 3700 dbSNP
rs925916084 3709 dbSNP
rs1455704197 3719 dbSNP
rs1369629179 3729 dbSNP
rs1035981710 3732 dbSNP
rs959093612 3735 dbSNP
rs1400715646 3747 dbSNP
rs989319163 3748 dbSNP
rs1408130193 3749 dbSNP
rs573403033 3763 dbSNP
rs914282540 3765 dbSNP
rs1301501594 3770 dbSNP
rs1393373098 3782 dbSNP
rs1378875325 3783 dbSNP
rs1395154199 3799 dbSNP
rs947132917 3804 dbSNP
rs977196848 3806 dbSNP
rs1232648672 3808 dbSNP
rs1356901768 3809 dbSNP
rs1202945019 3819 dbSNP
rs901031310 3822 dbSNP
rs924253302 3823 dbSNP
rs1210821795 3826 dbSNP
rs943722077 3831 dbSNP
rs1300673671 3837 dbSNP
rs1241836291 3838 dbSNP
rs1373682870 3851 dbSNP
rs181925085 3854 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucucGUUCUGGGGCAGA--GAUUu 5'
              ::||| || ||||  | || 
Target 5' aguuUGAGA-CCAGUCUGGCCAAc 3'
1 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000334955.8 | 3UTR | AGUUUGAGACCAGUCUGGCCAACAUGGUGAAACCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.551 2.6e-3 0.536 3.5e-3 24 Click to see details
GSE28260 Renal cortex and medulla 0.697 4.1e-3 0.588 1.7e-2 13 Click to see details
GSE26953 Aortic valvular endothelial cells -0.197 1.8e-1 -0.205 1.7e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells 0.185 2.0e-1 0.120 2.9e-1 23 Click to see details
GSE38226 Liver fibrosis -0.125 2.9e-1 0.008 4.9e-1 21 Click to see details
GSE32688 Pancreatic cancer 0.06 3.7e-1 -0.003 4.9e-1 32 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.043 4.2e-1 -0.279 8.8e-2 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

Error report submission