pre-miRNA Information
pre-miRNA hsa-mir-6132   
Genomic Coordinates chr7: 117020211 - 117020319
Description Homo sapiens miR-6132 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6132
Sequence 21| AGCAGGGCUGGGGAUUGCA |39
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1272646274 4 dbSNP
rs1211969145 8 dbSNP
rs1310278496 11 dbSNP
rs1044115534 13 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LLGL1   
Synonyms DLG4, HUGL, HUGL-1, HUGL1, LLGL, Lgl1, Mgl1
Description LLGL1, scribble cell polarity complex component
Transcript NM_004140   
Expression
Putative miRNA Targets on LLGL1
3'UTR of LLGL1
(miRNA target sites are highlighted)
>LLGL1|NM_004140|3'UTR
   1 GGAAGGCCAGAACTATCCCGACCTCCACCTGCCCTGCTCGGAGCTGGAGTGCTGGATCCCTGGCACCTGCCTGGCCCCTT
  81 AACATAGAACCACGCCTGCTAACCTGTAGGCTCCACTGGGACCTGCTGTCCTGTCCCGCCTGACCCTGGGCCCTGGAGCA
 161 GCACCAGCCCCAGGGTGTGGGCCTGGGACCTGGGCCAGAACTGAGCCCTCCTGCAGGCATTTGGCTGCCCTGGGGGCCCA
 241 CTGCCTAGGGAAGAGGACAGGTGGGGCCCAGCACCTGTGCCACCTCCCCCCCTCCACACACCATCCTTCCCCCTCACTTT
 321 GCAGAGTATTTTTCCTTTTTTTTTTTTTTCTTAAAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCCCCA
 401 TCTCTGCTCACTGCAAGCCCCGCCTTCTGGGTTCCCGCCATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGC
 481 GCCCACCACCACGCCCAGCTAATTTTTTCTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGA
 561 TCTCCTGACCTCGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCCTGC
 641 AAAGAGTATTTTTCTAGCGCCTGGGCTGGACAGTTGTTTCTAAAACTAAACTATTTTGGTACCTGCTTCTGGGCCAGTCC
 721 CCAGCCTGTCATGAGTGTGTGTGTGCGGGCATGGATGTGACTGGGAGCTCTGCTGGGCACCCACATCTGGGGCCTAGTCA
 801 GGTGTGTGTGTCCGGCGGGGGGGGGGGGCAGGGGGGGGGGTCAAGATGAGTTTCCCTGTAGATTGTACCTTGGGGTTTTT
 881 TTCTGTCGTTTTGTTAAAATTAGCGCCATTTTAATATTAAAAATACTGATTTTTAATATTGAAAATAAAAGCATTTAATA
 961 TCTCTTAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acGUUAGGGGUCGGGACGa 5'
            | || ||||||||||| 
Target 5' caCCATGCCCAGCCCTGCa 3'
623 - 641 169.00 -25.10
2
miRNA  3' acGUUAGGGGU---CGGGACGa 5'
            |:| |:|||   ||||||| 
Target 5' ccCGACCTCCACCTGCCCTGCt 3'
17 - 38 157.00 -22.00
3
miRNA  3' acgUUAGGGGUCG-GGACGa 5'
             :|||||::|| ||||| 
Target 5' ctgGATCCCTGGCACCTGCc 3'
52 - 71 136.00 -22.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM5991023 1 COSMIC
COSN30758271 2 COSMIC
COSN26439191 119 COSMIC
COSN15790789 612 COSMIC
COSN1193769 615 COSMIC
COSN8832654 1155 COSMIC
COSN22888166 1356 COSMIC
COSN14547384 1474 COSMIC
COSN21317519 1522 COSMIC
COSN26557736 1913 COSMIC
COSN24845658 1915 COSMIC
COSN26650380 1926 COSMIC
COSN31595214 1968 COSMIC
COSN31528592 2048 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1480414210 8 dbSNP
rs758918768 9 dbSNP
rs981272607 13 dbSNP
rs926636625 14 dbSNP
rs1254052357 15 dbSNP
rs1473540318 18 dbSNP
rs1174098221 25 dbSNP
rs1426552770 26 dbSNP
rs923178230 27 dbSNP
rs929274186 28 dbSNP
rs1414772871 29 dbSNP
rs1177938432 31 dbSNP
rs1352441642 33 dbSNP
rs1048114172 38 dbSNP
rs201503041 42 dbSNP
rs372468276 43 dbSNP
rs909160413 44 dbSNP
rs546941066 45 dbSNP
rs1347928857 49 dbSNP
rs757782040 50 dbSNP
rs1403639642 52 dbSNP
rs1225428649 54 dbSNP
rs1054850862 55 dbSNP
rs894924600 59 dbSNP
rs940602487 60 dbSNP
rs560759180 61 dbSNP
rs545106503 66 dbSNP
rs565346131 71 dbSNP
rs1024679357 72 dbSNP
rs1249248621 76 dbSNP
rs1416910897 78 dbSNP
rs967355292 80 dbSNP
rs901683471 81 dbSNP
rs1193591426 85 dbSNP
rs1478789824 86 dbSNP
rs753619892 87 dbSNP
rs997266004 88 dbSNP
rs1486040528 98 dbSNP
rs958172863 103 dbSNP
rs575670257 104 dbSNP
rs1252301842 108 dbSNP
rs911290040 111 dbSNP
rs1050637057 112 dbSNP
rs1462452570 119 dbSNP
rs977150129 122 dbSNP
rs1415865714 124 dbSNP
rs1340566526 135 dbSNP
rs531074292 136 dbSNP
rs1335609257 146 dbSNP
rs529425047 151 dbSNP
rs180722430 153 dbSNP
rs9896725 159 dbSNP
rs983343398 160 dbSNP
rs1415304136 165 dbSNP
rs756978745 171 dbSNP
rs941828962 172 dbSNP
rs1009776512 173 dbSNP
rs1232995533 175 dbSNP
rs1437516966 178 dbSNP
rs1025065914 182 dbSNP
rs1200716831 187 dbSNP
rs1467421091 188 dbSNP
rs1272885005 190 dbSNP
rs531261406 195 dbSNP
rs1291851283 200 dbSNP
rs1359038849 204 dbSNP
rs1222293113 206 dbSNP
rs781001578 216 dbSNP
rs550972093 218 dbSNP
rs1334620346 224 dbSNP
rs1331611071 226 dbSNP
rs750190143 230 dbSNP
rs1392091371 246 dbSNP
rs1046576652 247 dbSNP
rs1405926146 259 dbSNP
rs571122210 262 dbSNP
rs1156694051 271 dbSNP
rs1252839688 271 dbSNP
rs144502873 271 dbSNP
rs1452798297 271 dbSNP
rs373859475 271 dbSNP
rs377447477 271 dbSNP
rs773052193 271 dbSNP
rs902155016 272 dbSNP
rs368480098 275 dbSNP
rs535080221 275 dbSNP
rs1206116833 277 dbSNP
rs1204987203 282 dbSNP
rs1349345876 285 dbSNP
rs1309334810 290 dbSNP
rs1241952955 292 dbSNP
rs980876916 293 dbSNP
rs999613706 295 dbSNP
rs1436961239 297 dbSNP
rs756059356 309 dbSNP
rs765482866 310 dbSNP
rs1316143363 311 dbSNP
rs1399985918 321 dbSNP
rs926723849 326 dbSNP
rs952732782 327 dbSNP
rs1433143745 331 dbSNP
rs534116503 340 dbSNP
rs1191947454 342 dbSNP
rs1479209317 344 dbSNP
rs137958782 348 dbSNP
rs940553276 349 dbSNP
rs1448075981 358 dbSNP
rs1036312517 369 dbSNP
rs9897554 370 dbSNP
rs1218140911 371 dbSNP
rs186166153 387 dbSNP
rs1425544605 388 dbSNP
rs748805289 391 dbSNP
rs1169725669 396 dbSNP
rs1480128699 397 dbSNP
rs555945149 405 dbSNP
rs1430018554 412 dbSNP
rs1341021863 413 dbSNP
rs1299904030 416 dbSNP
rs1372576336 428 dbSNP
rs1374852099 432 dbSNP
rs763434268 433 dbSNP
rs1050168959 436 dbSNP
rs1417895880 437 dbSNP
rs888834269 444 dbSNP
rs1478461830 449 dbSNP
rs1000638116 455 dbSNP
rs191888498 459 dbSNP
rs1175614127 463 dbSNP
rs976822972 467 dbSNP
rs1053344862 468 dbSNP
rs1484407633 469 dbSNP
rs1414432536 476 dbSNP
rs371892221 477 dbSNP
rs892140678 478 dbSNP
rs1313588342 484 dbSNP
rs1009768240 486 dbSNP
rs1025220147 487 dbSNP
rs970903274 488 dbSNP
rs1002816320 489 dbSNP
rs951384404 497 dbSNP
rs1412790808 498 dbSNP
rs181988316 499 dbSNP
rs1450509882 503 dbSNP
rs1235775475 505 dbSNP
rs952885303 506 dbSNP
rs1346652978 508 dbSNP
rs1426144105 509 dbSNP
rs984209510 517 dbSNP
rs1163419159 528 dbSNP
rs1208328791 529 dbSNP
rs887727385 530 dbSNP
rs1015594314 533 dbSNP
rs113954617 534 dbSNP
rs971954219 538 dbSNP
rs577927646 544 dbSNP
rs1230849932 547 dbSNP
rs1197540830 552 dbSNP
rs1259733779 553 dbSNP
rs778411944 553 dbSNP
rs751574473 564 dbSNP
rs1259505583 566 dbSNP
rs1455551806 567 dbSNP
rs923207586 569 dbSNP
rs941963151 576 dbSNP
rs540949626 577 dbSNP
rs1434320862 579 dbSNP
rs1324303091 582 dbSNP
rs933264899 583 dbSNP
rs986344644 586 dbSNP
rs11867895 587 dbSNP
rs1454566650 590 dbSNP
rs1167475836 592 dbSNP
rs916380834 594 dbSNP
rs936389982 595 dbSNP
rs1053502369 597 dbSNP
rs1405086130 598 dbSNP
rs2746031 603 dbSNP
rs1439915649 609 dbSNP
rs892130798 622 dbSNP
rs1360428538 623 dbSNP
rs1488007006 626 dbSNP
rs529485718 634 dbSNP
rs771649926 638 dbSNP
rs906751842 642 dbSNP
rs1002479784 648 dbSNP
rs1034225741 651 dbSNP
rs185828890 659 dbSNP
rs1301761998 660 dbSNP
rs562703092 683 dbSNP
rs1295813910 684 dbSNP
rs1317158997 687 dbSNP
rs1157496683 694 dbSNP
rs767734560 699 dbSNP
rs148366171 700 dbSNP
rs1191317327 703 dbSNP
rs1005635309 712 dbSNP
rs1053424898 713 dbSNP
rs1015707543 723 dbSNP
rs141583977 732 dbSNP
rs1285455077 736 dbSNP
rs747091741 740 dbSNP
rs571252444 742 dbSNP
rs1029681371 749 dbSNP
rs79290848 753 dbSNP
rs1232732122 757 dbSNP
rs1189548189 760 dbSNP
rs954746253 764 dbSNP
rs57808902 766 dbSNP
rs1361842146 767 dbSNP
rs190671702 768 dbSNP
rs1299289432 770 dbSNP
rs1400112071 775 dbSNP
rs910369614 778 dbSNP
rs528056749 783 dbSNP
rs936548831 784 dbSNP
rs1177935317 797 dbSNP
rs1426717323 797 dbSNP
rs1343841674 811 dbSNP
rs770269800 817 dbSNP
rs1489318258 818 dbSNP
rs1463454488 821 dbSNP
rs984117280 822 dbSNP
rs1200157199 827 dbSNP
rs1345934504 832 dbSNP
rs1258187042 836 dbSNP
rs1394402625 839 dbSNP
rs1225726927 849 dbSNP
rs1317634637 855 dbSNP
rs1279390719 857 dbSNP
rs755037401 861 dbSNP
rs1341898906 863 dbSNP
rs1331620184 864 dbSNP
rs369909072 864 dbSNP
rs958701074 864 dbSNP
rs1373561165 866 dbSNP
rs567565535 867 dbSNP
rs551114528 873 dbSNP
rs1422577857 876 dbSNP
rs913683798 877 dbSNP
rs1478757329 890 dbSNP
rs1304574766 893 dbSNP
rs1415817022 894 dbSNP
rs1336754751 899 dbSNP
rs916499240 901 dbSNP
rs1258566923 905 dbSNP
rs970576957 912 dbSNP
rs1272395945 913 dbSNP
rs1467091180 921 dbSNP
rs1219397488 927 dbSNP
rs536502785 957 dbSNP
rs556399888 962 dbSNP
rs776041993 964 dbSNP
rs1176889142 974 dbSNP
rs1314441944 979 dbSNP
rs906202986 985 dbSNP
rs1476353254 996 dbSNP
rs938230741 997 dbSNP
rs1467163221 1005 dbSNP
rs1055418371 1009 dbSNP
rs935117084 1017 dbSNP
rs888596214 1018 dbSNP
rs1404130013 1030 dbSNP
rs1330279317 1031 dbSNP
rs1005749898 1034 dbSNP
rs1354662469 1035 dbSNP
rs1015781102 1043 dbSNP
rs1439317138 1043 dbSNP
rs1441014135 1048 dbSNP
rs897220059 1049 dbSNP
rs914870640 1054 dbSNP
rs998282902 1055 dbSNP
rs1356975340 1057 dbSNP
rs1233608698 1058 dbSNP
rs762987993 1063 dbSNP
rs1039927025 1067 dbSNP
rs1332534139 1070 dbSNP
rs1237556023 1075 dbSNP
rs1216296717 1077 dbSNP
rs569829573 1078 dbSNP
rs538360964 1080 dbSNP
rs1275177432 1084 dbSNP
rs1438522907 1086 dbSNP
rs1047715935 1088 dbSNP
rs1204086781 1090 dbSNP
rs1322826637 1101 dbSNP
rs28523978 1105 dbSNP
rs199555092 1106 dbSNP
rs1017031666 1109 dbSNP
rs1156899990 1115 dbSNP
rs1017545711 1117 dbSNP
rs748470222 1117 dbSNP
rs957854401 1119 dbSNP
rs577995803 1122 dbSNP
rs1472085133 1124 dbSNP
rs1012951716 1125 dbSNP
rs1246436279 1132 dbSNP
rs1200275860 1133 dbSNP
rs1170209920 1135 dbSNP
rs1268901283 1155 dbSNP
rs1213851083 1167 dbSNP
rs1352281628 1171 dbSNP
rs1286290788 1172 dbSNP
rs1023536860 1177 dbSNP
rs879172892 1178 dbSNP
rs1274025346 1179 dbSNP
rs966394407 1180 dbSNP
rs923736668 1181 dbSNP
rs1296216191 1184 dbSNP
rs1399514379 1190 dbSNP
rs1361177444 1192 dbSNP
rs981895204 1194 dbSNP
rs548063476 1200 dbSNP
rs374114663 1201 dbSNP
rs1412973350 1208 dbSNP
rs937713845 1224 dbSNP
rs1376840752 1229 dbSNP
rs989167117 1230 dbSNP
rs915004638 1238 dbSNP
rs1415049893 1241 dbSNP
rs143583729 1242 dbSNP
rs1263258380 1257 dbSNP
rs1039800729 1260 dbSNP
rs1440308258 1261 dbSNP
rs910105174 1265 dbSNP
rs941611916 1276 dbSNP
rs182887619 1278 dbSNP
rs934268497 1291 dbSNP
rs1047315022 1292 dbSNP
rs1276235833 1296 dbSNP
rs1270767902 1297 dbSNP
rs887233124 1301 dbSNP
rs1005738428 1302 dbSNP
rs1338683413 1318 dbSNP
rs1446148970 1320 dbSNP
rs897336223 1326 dbSNP
rs1335052057 1333 dbSNP
rs1038451510 1335 dbSNP
rs574005586 1338 dbSNP
rs998668203 1341 dbSNP
rs1423768563 1345 dbSNP
rs770126305 1348 dbSNP
rs34604631 1361 dbSNP
rs1350287394 1363 dbSNP
rs1471496837 1366 dbSNP
rs1236569015 1368 dbSNP
rs1012919221 1369 dbSNP
rs1198010735 1371 dbSNP
rs1443944822 1371 dbSNP
rs540731826 1371 dbSNP
rs1211930284 1372 dbSNP
rs1226710798 1373 dbSNP
rs1051228674 1375 dbSNP
rs55854919 1376 dbSNP
rs1006922462 1377 dbSNP
rs1403104218 1378 dbSNP
rs1195793970 1379 dbSNP
rs1182149352 1382 dbSNP
rs956509109 1387 dbSNP
rs1236182337 1391 dbSNP
rs1458012419 1394 dbSNP
rs989301227 1396 dbSNP
rs1219209862 1397 dbSNP
rs1290676554 1398 dbSNP
rs889770803 1402 dbSNP
rs1374926893 1403 dbSNP
rs1308737476 1404 dbSNP
rs1243137568 1406 dbSNP
rs1379491592 1408 dbSNP
rs1292308194 1409 dbSNP
rs1457834660 1411 dbSNP
rs1491471309 1420 dbSNP
rs1157602459 1421 dbSNP
rs1252388841 1421 dbSNP
rs1429418658 1421 dbSNP
rs397946767 1421 dbSNP
rs577407088 1421 dbSNP
rs963802645 1425 dbSNP
rs975096590 1426 dbSNP
rs1186075433 1431 dbSNP
rs1247416870 1433 dbSNP
rs922224729 1435 dbSNP
rs376266418 1436 dbSNP
rs1172688860 1438 dbSNP
rs1399791607 1439 dbSNP
rs562764493 1441 dbSNP
rs567854017 1444 dbSNP
rs1325744195 1445 dbSNP
rs536864184 1450 dbSNP
rs1386751312 1451 dbSNP
rs1368939909 1454 dbSNP
rs983414235 1456 dbSNP
rs531768402 1460 dbSNP
rs941492750 1461 dbSNP
rs1365363179 1467 dbSNP
rs1038589822 1473 dbSNP
rs1432335508 1474 dbSNP
rs1425825560 1475 dbSNP
rs1373364508 1480 dbSNP
rs1235296658 1498 dbSNP
rs1279804851 1504 dbSNP
rs1032989063 1506 dbSNP
rs545125701 1507 dbSNP
rs894558590 1508 dbSNP
rs1010782255 1510 dbSNP
rs1207209885 1511 dbSNP
rs1020713347 1513 dbSNP
rs138271645 1522 dbSNP
rs982248011 1523 dbSNP
rs1313072039 1524 dbSNP
rs1207442169 1526 dbSNP
rs1254317757 1531 dbSNP
rs1454385931 1534 dbSNP
rs927761695 1536 dbSNP
rs1337859623 1538 dbSNP
rs1375522522 1540 dbSNP
rs959395113 1542 dbSNP
rs113978084 1545 dbSNP
rs909549988 1546 dbSNP
rs1400278863 1547 dbSNP
rs941558137 1550 dbSNP
rs1300672602 1553 dbSNP
rs1384039041 1556 dbSNP
rs907175610 1557 dbSNP
rs1037320275 1566 dbSNP
rs918755591 1567 dbSNP
rs934200452 1569 dbSNP
rs1030862739 1571 dbSNP
rs547082315 1572 dbSNP
rs1010692026 1573 dbSNP
rs1254337053 1577 dbSNP
rs560825890 1578 dbSNP
rs963851125 1579 dbSNP
rs1197346639 1580 dbSNP
rs889850137 1583 dbSNP
rs1329518274 1585 dbSNP
rs1241492487 1588 dbSNP
rs1007405409 1595 dbSNP
rs1280479353 1595 dbSNP
rs1310157362 1597 dbSNP
rs1054346546 1602 dbSNP
rs1328973892 1610 dbSNP
rs751690992 1613 dbSNP
rs1275524375 1615 dbSNP
rs1464047215 1616 dbSNP
rs1469315753 1622 dbSNP
rs1212478731 1624 dbSNP
rs530029278 1625 dbSNP
rs1010772492 1626 dbSNP
rs982495154 1634 dbSNP
rs1020849358 1637 dbSNP
rs902329007 1644 dbSNP
rs1245407827 1645 dbSNP
rs1177183577 1648 dbSNP
rs1003348128 1650 dbSNP
rs1035281674 1656 dbSNP
rs1259273115 1656 dbSNP
rs974329776 1657 dbSNP
rs1182156922 1658 dbSNP
rs916043014 1659 dbSNP
rs959113165 1661 dbSNP
rs948934654 1662 dbSNP
rs780789361 1666 dbSNP
rs1375795527 1667 dbSNP
rs907313292 1670 dbSNP
rs990575526 1671 dbSNP
rs1016601572 1672 dbSNP
rs962409293 1675 dbSNP
rs972962280 1678 dbSNP
rs749637203 1679 dbSNP
rs186849199 1681 dbSNP
rs1458430702 1684 dbSNP
rs569891215 1692 dbSNP
rs1460881197 1693 dbSNP
rs1157012827 1698 dbSNP
rs191476014 1700 dbSNP
rs986964405 1702 dbSNP
rs182463990 1703 dbSNP
rs571646111 1707 dbSNP
rs1054506280 1709 dbSNP
rs534250963 1710 dbSNP
rs1279922234 1711 dbSNP
rs187988401 1712 dbSNP
rs573671584 1713 dbSNP
rs536577070 1714 dbSNP
rs1367474976 1715 dbSNP
rs1336069561 1716 dbSNP
rs1419293741 1718 dbSNP
rs1003870658 1719 dbSNP
rs1034825319 1721 dbSNP
rs1160641192 1723 dbSNP
rs1477209265 1726 dbSNP
rs916179059 1726 dbSNP
rs1263154358 1744 dbSNP
rs552437407 1745 dbSNP
rs1012000341 1747 dbSNP
rs1214087432 1748 dbSNP
rs1195880631 1757 dbSNP
rs1284451971 1761 dbSNP
rs115065254 1762 dbSNP
rs934795070 1762 dbSNP
rs1293600250 1768 dbSNP
rs962359304 1768 dbSNP
rs1053139839 1773 dbSNP
rs1189746287 1774 dbSNP
rs1258008673 1779 dbSNP
rs1276377999 1784 dbSNP
rs1474825359 1790 dbSNP
rs538995506 1794 dbSNP
rs1366790528 1795 dbSNP
rs1346022546 1797 dbSNP
rs947406871 1798 dbSNP
rs1401921248 1802 dbSNP
rs1168581599 1803 dbSNP
rs1043592737 1805 dbSNP
rs1481704557 1806 dbSNP
rs1190897354 1807 dbSNP
rs1430869602 1807 dbSNP
rs1474757269 1812 dbSNP
rs1242370994 1815 dbSNP
rs1025751921 1817 dbSNP
rs899775800 1817 dbSNP
rs1050979792 1820 dbSNP
rs767132888 1820 dbSNP
rs1408277140 1821 dbSNP
rs890964386 1823 dbSNP
rs1218092704 1828 dbSNP
rs1356570325 1830 dbSNP
rs955611932 1832 dbSNP
rs545270380 1833 dbSNP
rs1328725172 1837 dbSNP
rs1337789453 1843 dbSNP
rs1471128248 1844 dbSNP
rs1398744458 1845 dbSNP
rs1170543625 1848 dbSNP
rs911388608 1849 dbSNP
rs565431841 1859 dbSNP
rs942913616 1861 dbSNP
rs962343228 1863 dbSNP
rs995202048 1866 dbSNP
rs1471602705 1873 dbSNP
rs1242358521 1874 dbSNP
rs990178235 1875 dbSNP
rs1462432906 1876 dbSNP
rs1236315473 1877 dbSNP
rs1197875319 1880 dbSNP
rs1275205131 1881 dbSNP
rs1308199878 1881 dbSNP
rs1221600656 1883 dbSNP
rs1339592611 1887 dbSNP
rs1212634172 1892 dbSNP
rs1023619760 1896 dbSNP
rs74595495 1899 dbSNP
rs1242604262 1900 dbSNP
rs1454947300 1900 dbSNP
rs1482842108 1900 dbSNP
rs1163776679 1902 dbSNP
rs1176619420 1902 dbSNP
rs1219473406 1902 dbSNP
rs1234481164 1902 dbSNP
rs1236106754 1902 dbSNP
rs1375084862 1902 dbSNP
rs1446244615 1902 dbSNP
rs1480912389 1902 dbSNP
rs1490196035 1902 dbSNP
rs866567010 1902 dbSNP
rs1352013475 1903 dbSNP
rs970374264 1903 dbSNP
rs1179903661 1904 dbSNP
rs1308983151 1904 dbSNP
rs1364349465 1905 dbSNP
rs1376181269 1905 dbSNP
rs1303428973 1906 dbSNP
rs1426163961 1906 dbSNP
rs1263690130 1907 dbSNP
rs1378321607 1907 dbSNP
rs1189350798 1908 dbSNP
rs1419385426 1908 dbSNP
rs1269658782 1909 dbSNP
rs796716595 1909 dbSNP
rs1216959021 1910 dbSNP
rs1225085147 1910 dbSNP
rs1299842564 1911 dbSNP
rs1319061654 1911 dbSNP
rs1344398190 1912 dbSNP
rs1483081142 1912 dbSNP
rs1287886336 1913 dbSNP
rs1406187068 1913 dbSNP
rs796860314 1913 dbSNP
rs866868632 1913 dbSNP
rs199646471 1914 dbSNP
rs1201699455 1915 dbSNP
rs1430144436 1915 dbSNP
rs571151365 1915 dbSNP
rs377526192 1916 dbSNP
rs373862678 1918 dbSNP
rs79760598 1918 dbSNP
rs1429071055 1919 dbSNP
rs1193942704 1920 dbSNP
rs1203653166 1921 dbSNP
rs1389684776 1924 dbSNP
rs1224855873 1925 dbSNP
rs1428052888 1925 dbSNP
rs1175831987 1926 dbSNP
rs528469744 1927 dbSNP
rs1469047537 1930 dbSNP
rs1178449002 1932 dbSNP
rs1406736945 1932 dbSNP
rs1465802790 1933 dbSNP
rs1449017214 1935 dbSNP
rs1464150795 1936 dbSNP
rs1301480041 1937 dbSNP
rs1387720380 1940 dbSNP
rs1383313248 1946 dbSNP
rs1171439063 1950 dbSNP
rs1430512158 1953 dbSNP
rs572054617 1954 dbSNP
rs1183374859 1961 dbSNP
rs1362479821 1961 dbSNP
rs1462017656 1961 dbSNP
rs928784831 1964 dbSNP
rs1236037716 1966 dbSNP
rs1336927886 1968 dbSNP
rs1303606298 1970 dbSNP
rs1250264111 1972 dbSNP
rs946152694 1973 dbSNP
rs1041659684 1974 dbSNP
rs1312371755 1977 dbSNP
rs1451688202 1982 dbSNP
rs1262302750 1983 dbSNP
rs956207386 1986 dbSNP
rs147271988 1987 dbSNP
rs370163695 1990 dbSNP
rs560887236 1991 dbSNP
rs1463534912 1993 dbSNP
rs1366973795 1996 dbSNP
rs1163122256 1998 dbSNP
rs1056823103 2002 dbSNP
rs1447660388 2006 dbSNP
rs1177389739 2012 dbSNP
rs1195590412 2012 dbSNP
rs1437745760 2015 dbSNP
rs1251798341 2016 dbSNP
rs914670701 2017 dbSNP
rs1426071965 2019 dbSNP
rs1481304397 2019 dbSNP
rs947375738 2020 dbSNP
rs894960292 2022 dbSNP
rs1012116012 2027 dbSNP
rs1244758186 2031 dbSNP
rs529688921 2032 dbSNP
rs1316880628 2033 dbSNP
rs1039050815 2034 dbSNP
rs898225103 2034 dbSNP
rs993920886 2044 dbSNP
rs550132584 2046 dbSNP
rs921174334 2048 dbSNP
rs1025277009 2050 dbSNP
rs1425530514 2052 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acGUUAGG-GGU-CGGGACga 5'
            ::| || ||| |||| |  
Target 5' cgUGAGCCACCAUGCCCAG-- 3'
18 - 36
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000316843.4 | 3UTR | UGAUCCACCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAGGCGUGAGCCACCAUGCCCAGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000316843.4 | 3UTR | AGUGCUGGGAUUACAGGCGUGAGCCACCAUGCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6132 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT067294 NECAP1 NECAP endocytosis associated 1 2 10
MIRT100110 ABT1 activator of basal transcription 1 2 8
MIRT358583 CANX calnexin 2 2
MIRT445247 SEMA5A semaphorin 5A 2 2
MIRT445764 CCND3 cyclin D3 2 2
MIRT452388 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452829 FAM131B family with sequence similarity 131 member B 2 2
MIRT453450 GLG1 golgi glycoprotein 1 2 2
MIRT455435 ID3 inhibitor of DNA binding 3, HLH protein 2 2
MIRT460629 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT461607 DPH2 DPH2 homolog 2 2
MIRT461989 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT464258 VCL vinculin 2 2
MIRT465713 TNFAIP1 TNF alpha induced protein 1 2 2
MIRT466475 TECPR2 tectonin beta-propeller repeat containing 2 2 7
MIRT467119 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT468299 SFT2D2 SFT2 domain containing 2 2 2
MIRT469696 RAB5B RAB5B, member RAS oncogene family 2 8
MIRT469904 PTRF caveolae associated protein 1 2 2
MIRT470015 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT471385 PDPR pyruvate dehydrogenase phosphatase regulatory subunit 2 2
MIRT471409 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT471719 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT473608 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT476328 GLTSCR1L BRD4 interacting chromatin remodeling complex associated protein like 2 2
MIRT479448 CDK6 cyclin dependent kinase 6 2 2
MIRT482032 AMER1 APC membrane recruitment protein 1 2 2
MIRT482360 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT484661 HOXD3 homeobox D3 2 4
MIRT486828 NDOR1 NADPH dependent diflavin oxidoreductase 1 2 2
MIRT487069 CLASP1 cytoplasmic linker associated protein 1 2 4
MIRT487196 NFASC neurofascin 2 4
MIRT487448 TFAP2B transcription factor AP-2 beta 2 4
MIRT487517 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT487640 BRSK2 BR serine/threonine kinase 2 2 4
MIRT487755 SKI SKI proto-oncogene 2 4
MIRT489944 CPLX1 complexin 1 2 2
MIRT491101 MSI1 musashi RNA binding protein 1 2 4
MIRT491181 LAMA5 laminin subunit alpha 5 2 2
MIRT492355 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493918 FAM127B retrotransposon Gag like 8A 2 4
MIRT493932 FAM127A retrotransposon Gag like 8C 2 4
MIRT494679 ARID3A AT-rich interaction domain 3A 2 2
MIRT494814 AKAP11 A-kinase anchoring protein 11 2 2
MIRT494835 ADCY9 adenylate cyclase 9 2 2
MIRT495455 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT496962 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT526228 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT531028 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT557110 HOXA3 homeobox A3 2 2
MIRT560514 POGK pogo transposable element derived with KRAB domain 2 2
MIRT567753 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT569608 TRIM29 tripartite motif containing 29 2 2
MIRT570242 CPNE5 copine 5 2 2
MIRT572327 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT572373 ATOX1 antioxidant 1 copper chaperone 2 2
MIRT575024 Tecpr2 tectonin beta-propeller repeat containing 2 2 5
MIRT576146 Hmox1 heme oxygenase 1 2 2
MIRT612443 SMOC2 SPARC related modular calcium binding 2 2 2
MIRT615404 VDAC2 voltage dependent anion channel 2 2 2
MIRT629114 CYCS cytochrome c, somatic 2 2
MIRT631362 FOXI2 forkhead box I2 2 2
MIRT639322 THBD thrombomodulin 2 2
MIRT643797 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT669687 ABLIM1 actin binding LIM protein 1 2 2
MIRT670595 LLGL1 LLGL1, scribble cell polarity complex component 2 4
MIRT691190 NIF3L1 NGG1 interacting factor 3 like 1 2 2
MIRT691688 FLOT2 flotillin 2 2 2
MIRT697127 OTUD5 OTU deubiquitinase 5 2 2
MIRT700814 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701248 NUP35 nucleoporin 35 2 2
MIRT702362 KLHL15 kelch like family member 15 2 2
MIRT703325 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 2 2
MIRT706060 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT710475 CDH5 cadherin 5 2 2
MIRT713018 SLC4A2 solute carrier family 4 member 2 2 2
MIRT716427 RAB15 RAB15, member RAS oncogene family 2 2
MIRT718093 ABHD12 abhydrolase domain containing 12 2 2
MIRT718542 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q 2 2
MIRT719122 CACFD1 calcium channel flower domain containing 1 2 2
MIRT721393 LDLRAD4 low density lipoprotein receptor class A domain containing 4 2 2
MIRT736283 CDC42 cell division cycle 42 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6132 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6132 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6132 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-6132 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6132 Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6132 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-6132 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-6132 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6132 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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