pre-miRNA Information
pre-miRNA hsa-mir-4486   
Genomic Coordinates chr11: 19575310 - 19575372
Description Homo sapiens miR-4486 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4486
Sequence 5| GCUGGGCGAGGCUGGCA |21
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs774299284 8 dbSNP
rs902172817 14 dbSNP
rs1222795726 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PTGIS   
Synonyms CYP8, CYP8A1, PGIS, PTGI
Description prostaglandin I2 synthase
Transcript NM_000961   
Expression
Putative miRNA Targets on PTGIS
3'UTR of PTGIS
(miRNA target sites are highlighted)
>PTGIS|NM_000961|3'UTR
   1 CACAGGGAGCAGATGGATCCACGTGCTCGCCTCTGCCCAGCCTGCCCCAGCCTGCCCCAGCCTCCCAGCTTTCTGTGTGC
  81 ACAGTTGGCCCGGGTGCAGGTGCTAGCATTACCACTTCCCTGCTTTTCTCCCAGAAGGCTGGGTCCAGGGGAGGGAAAAG
 161 CTAAGAGGGTGAACAAAGAAAAGACATTGAAAGCTCTATGGATTATCCACTGCAAAGTTTTCTTTCCAAAATCAGGCTTT
 241 GTCTGCTCCCAATTCACCTCGTTACTCTCACCTCGTGATATCCACAAATGCTATTCAGATAAGGCAGAACTAGGAGTCTT
 321 CACTGCTCTGCCCCCAACTCCCGGAGGTGTCACCTTCCTAGTTCTTATGAGCTAGCATGGCCCGGGCCTTATCCAGTCAA
 401 AGCGGATGCTGGCCACAGAAAGGCCACTCAGGATGTCCTTTGTGTCCATTGATGTCATTCAGCAGTCAGTCCCCCAATAA
 481 TCCTTAAACTAGCTAAAACCAAAGGAGTCCCTTAGAAGATCTGCTTCCCTGGGGCCCCATTTGCCAGATTGCCCCATTGC
 561 TCACACTACTTGAGAAAATGCAGGAGAGCTTCCCCCAAGGCTGATGCATTCCCGGTGCAGAACAGGGGCACCCTCCAAAC
 641 ACTGGGCTCTGAGGAGTGGAGTTCTCTGTTCTAGAGTGACAGGCACCAGATGGGATGGGCTTTCTCAGTGTCAGCACTCA
 721 GGTAGGGAGCTAAGGAAGACACAGCCCAGACAAGATGGCTGGAAGGAGCCAGCCAGGACTCCTTAGACTGATCAAGCCAA
 801 AAAAGAAGGTGCCGATTTCATGCATTCTAGTGCAGAAGCCCCAACTGTGATCACGATCCAGTCTGCAGACGTGTTTTGTT
 881 TGGACTTCACTTAAAAAAATGCCTTAGTTGTTATCATCTTTGGGAGAGTTCATTCAAAATGTCCAGCTTCTCTTGAAAAC
 961 TTGGTATATCTGGCCACACTGGGCTCACATTCCCAAGGGTAACTCTTGGCCAGAGCTGAGTGGCAGCCGCCTCCCTTATG
1041 CAGGACATGTGCTCTCGGCTTCACCAGGGTTCTGACCGGGTCTGCTTCTGCATTCACAGCGCCTCCTGGACCTGAAGGCA
1121 TCTGAGTGTGAGACCCTGTTCTAACTCTTAGAAGTGACATTGTAAGAGGTGGTGGGGACCAGCTAATTGGTCCAACCCAG
1201 CCTGAGTGCACCACCCTTTGAACAAATGTATCAGTGATGAAAATTTGCCTTTGCCCCGGCTTGCCTGTAATCCCAGCACT
1281 TTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTCGGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTA
1361 CTAAACATAAAAAAATTAGTCAGGTGTGGCGGTGCGTGCCTGTAATCCCAGCTATTCAGGAGGCTGAGGCACCAGAATTG
1441 CTTGAACCCAGGAGGTGGAGGTTGCAGTGAACTGAGACTGCGCCACGGCACTCCAGCCTGGGCGACAGAGCAAGACTCTG
1521 TCTCAATAAATAAATAATTAATTAAAATAAAAAACAGCTTAAAGAGAAAAATGGCCTGCAAACCTTTTTTATGATGCTAT
1601 TTTTATTAATATAAAGTCCTGTTTATTGAGACCCTTTAAATGCCTGCGAGAGACCCTACAGACAGTATGTCTACTCCTCA
1681 CAGCATCTCTATGAAGAGAAGGAGGGTTGTGCCCACTTCATAGATGAGAAAACTGAGAGGTGAGGTGACTTGCCTGGGGC
1761 CACATAGCTCATAAGCTGTAGAACTCTGCAGGCAGATTTACTGTCCCAGGAGCAAATGCTGGATGAGCAACTCCTGTTCT
1841 TTGGGCTCAAGGGGACTGGTGATGGGACAATTCTTCTCGACTTCAGGAGCTGACAGAGCCAGAGGCACCTAAACTTGGGT
1921 ACATCTTGTAAGACACATAATGAGGTCCCTCTAGCTTTAGCTGGAGGGAGATAAAAGAACCCCAGACCTCTGAATGTCCC
2001 AGAGGCTAGTCTCTTCTCAGAGCAGCACTGGGGTTTGGGGGCTTCCCTGGGCCTCAGCCTCCAGGCACCCCCAGGATTCC
2081 CAGAGAGACGCTGTGATTGGCAGGAGGCAGGATATCCCCAGGGAAACCCATCTTCACGCCTGGGTGACCCCCACTGCCGC
2161 CTCCTTCTTAACTCTGCAGGAAATCAGAGCTGGCAGCCTCCAGTGGGAGGACAGAGCCGGTTTCCGTGGCAACCCTCAGC
2241 TGCCTCATCGTGGCTGGGAAGGGAAGGAAGCAAGCCGGCAGAAATAGCTATGGAAGGTCTTGCGCAGGCTGCAACCCTGG
2321 TGTGCTGGGCGAAAACCCTTATGACTCCCCCCTTCCAAATCAGGCTGGGTTGTCACTGAGACTAGATTCTCACCTGCCTT
2401 CAAAGAAGGGCCAATTCCCTTTAAAGGTCGCACCTCCTTGGAACCACAGTCATTAGTGAATTACACTCAAGGAAAAGATG
2481 TGCTCCCACCAGGCAGCTCCAGCTGTTACCTGAGATACTGAAGTGCAGCTCAGGAGACGATTATTTAAACCTGCCCTTGT
2561 TTTAATCGTTATTTTTCTCTTTAAAAAAAATAGAAGCTATAAAGAAAAGAGGGAGAGATGAGTGGGTTAGCTACCTGCTA
2641 TGCGCTAGTTAGGAAGTTACCTGGATGCCATTGTATTTCTTCATCCCTTGCTTAAGAATCAAAATTACTGGACATATGTT
2721 AGGAATACTCTTTCTTTCTTTCTTTCTTTTTAAGCTCAGTGGCAAGAATGAAATACTCTTTTTTTTTTTTTTTTTTTGAG
2801 ATGGAGTCTCGCTCTGCTGCCCAGGCTAGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCGTGTTCAC
2881 ACCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACCCGCCACCACACCCGGCTAATTTTTGGATTTTTA
2961 GTAGAGATGGGATTTCACCGTATTAGCCAGGATGGTCTTGATCTCCTGAGCTCGTGATCTGCCCGCCTCGGCCTCCCAAA
3041 GTGCTGGGATTACAGGTGTGAGCCACCGCGCCCAGCCAAGAATAAAATACTCTTAAGTTGATCTAATGAAGTGTTTCCTT
3121 ACCATTGTGATTATTGTTACTATTATTTGCTATATTTTAATATTGTTGTTTACCAAATATTCTCCTTTAAACAGACTCGC
3201 TTTTTAAACTTTTTTTTTTTTTTTTGAGACGGAGTTTCACGCTTATTGCCCAGGCTGGAGTGCAATGGCACGATCTCAGC
3281 TCACCACAACCTCCACCTCCTGGGTTTAAGCAATGCTTCTGCCTCAGCTTCCCAAGTAGCTGAGATTACAGGCGCACACC
3361 ACCACGCCCAACTGATTTTTGTATTTTTAGTAGAGACGGGGTTTCCCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACC
3441 TCGTGATTTGCCTGCCTGGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCATGCCCGGCCTAAACTTTGTTTTT
3521 AAAATGAACTTTTTTTCCCCCCAATTGCTGCCAATAGTGGATAACATGTATCACTCACTGCCAAAAATAGAAAGTGACCA
3601 TGAAAAATAAATTCGCTGGGGAAGGGGGCTCCATGCTGGTGTGGCCAAGGCTGAGAGCTCTCTCTTCTCTGTTACAAAAC
3681 GAGATAAGCAAGTGTTAGAATTGCCTTAAGGCCACACTGGCATCTCCCTGACCTTCTCCAGGGACAGAAGCAGGAGTAAG
3761 TTTCTCATCCCATGGGCGACCAGGGCCATCTCCTCCCACCAGTGGCCCCCACTCACAGGGAGCTGGCAATGCCCTACCTG
3841 CCTGTTCTCCAGATGGAGAAACAGGCTCTGAGATTTCACAGGTCTTGCCCAAAGTCATTGATTTTGATGATTAAAAAGAA
3921 TAAACACAGTGTTTCCTGAGTAGCAGTGATTGTTATGCCTTGCTATTTTAATAAAGATTCTATTTTCGTATAACATTGTC
4001 AAGTGGAAACATGCTGAAATCTATTAAACCATCTTTGTTTGTGGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acGGUCGGAGCGGGUCg 5'
            ||| || ||||||| 
Target 5' agCCA-CCGCGCCCAGc 3'
3061 - 3076 154.00 -26.10
2
miRNA  3' acGGUCGGA-GCGGGUCg 5'
            |: |||| :|||||| 
Target 5' tgCTCGCCTCTGCCCAGc 3'
24 - 41 139.00 -25.90
3
miRNA  3' acGGUCGGAGCGGGUcg 5'
            ||| || ||||||  
Target 5' caCCA-CCACGCCCAac 3'
3357 - 3372 134.00 -17.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31496955 23 COSMIC
COSN30460714 28 COSMIC
COSN31556131 47 COSMIC
COSN31581076 50 COSMIC
COSN30657985 53 COSMIC
COSN30109765 54 COSMIC
COSN30158901 61 COSMIC
COSN23773844 83 COSMIC
COSN31603704 90 COSMIC
COSN30169115 151 COSMIC
COSN5973052 184 COSMIC
COSN21991456 403 COSMIC
COSN16665468 524 COSMIC
COSN17182897 1299 COSMIC
COSN5445197 1432 COSMIC
COSN7095382 1583 COSMIC
COSN24824090 1585 COSMIC
COSN1874868 1617 COSMIC
COSN6687341 1695 COSMIC
COSN20651105 1766 COSMIC
COSN31549865 1886 COSMIC
COSN30172710 2013 COSMIC
COSN30540915 2055 COSMIC
COSN31522544 2118 COSMIC
COSN8000364 2157 COSMIC
COSN26504700 2204 COSMIC
COSN31563364 2229 COSMIC
COSN30541599 2235 COSMIC
COSN26679135 2315 COSMIC
COSN24307186 2322 COSMIC
COSN17212239 2506 COSMIC
COSN23853578 3070 COSMIC
COSN31935428 3210 COSMIC
COSN25694018 3365 COSMIC
COSN25568816 3405 COSMIC
COSN25579564 3536 COSMIC
COSN30387046 3551 COSMIC
COSN22525534 3625 COSMIC
COSN6687340 3680 COSMIC
COSN28949754 4012 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs35891838 5 dbSNP
rs1187568174 9 dbSNP
rs370593230 11 dbSNP
rs1462399008 14 dbSNP
rs1260810630 18 dbSNP
rs377591847 22 dbSNP
rs745714941 23 dbSNP
rs1271706165 25 dbSNP
rs777834379 27 dbSNP
rs1325720987 28 dbSNP
rs373689951 29 dbSNP
rs370548555 31 dbSNP
rs968242973 35 dbSNP
rs767598666 37 dbSNP
rs755430065 47 dbSNP
rs752096072 48 dbSNP
rs1166457795 49 dbSNP
rs1475376348 50 dbSNP
rs1377276791 60 dbSNP
rs1273454198 64 dbSNP
rs973694801 64 dbSNP
rs1483297649 78 dbSNP
rs1196518240 79 dbSNP
rs975818366 82 dbSNP
rs1265007745 88 dbSNP
rs988397629 91 dbSNP
rs1235189904 93 dbSNP
rs957200083 100 dbSNP
rs5585 116 dbSNP
rs1186675522 119 dbSNP
rs1017390255 132 dbSNP
rs1008536149 138 dbSNP
rs5586 154 dbSNP
rs1470561390 155 dbSNP
rs1333629885 165 dbSNP
rs779208028 168 dbSNP
rs534679219 174 dbSNP
rs1246412201 175 dbSNP
rs1433176711 181 dbSNP
rs1271052642 186 dbSNP
rs1028705998 187 dbSNP
rs994624670 198 dbSNP
rs1284931004 199 dbSNP
rs1324211890 210 dbSNP
rs1293289136 212 dbSNP
rs1016016464 222 dbSNP
rs757564079 223 dbSNP
rs1446219963 226 dbSNP
rs1002909126 234 dbSNP
rs574158861 241 dbSNP
rs1448162234 243 dbSNP
rs5587 246 dbSNP
rs1004740117 252 dbSNP
rs1191980678 260 dbSNP
rs537386547 261 dbSNP
rs892989248 267 dbSNP
rs1054351601 269 dbSNP
rs934568191 271 dbSNP
rs1056986036 274 dbSNP
rs1319034073 277 dbSNP
rs753950035 279 dbSNP
rs1398326117 297 dbSNP
rs5588 300 dbSNP
rs1366640683 305 dbSNP
rs570327195 310 dbSNP
rs944429344 314 dbSNP
rs1273062416 318 dbSNP
rs926666793 337 dbSNP
rs1284625612 338 dbSNP
rs1045119333 339 dbSNP
rs1224172558 342 dbSNP
rs946818359 343 dbSNP
rs1490633135 353 dbSNP
rs1198595656 354 dbSNP
rs1253657696 356 dbSNP
rs1202790468 369 dbSNP
rs1436842053 376 dbSNP
rs915392960 383 dbSNP
rs954185365 384 dbSNP
rs1418100649 390 dbSNP
rs1165638913 392 dbSNP
rs1027111151 400 dbSNP
rs569752965 403 dbSNP
rs539460849 404 dbSNP
rs1442785634 409 dbSNP
rs988691970 411 dbSNP
rs565707000 414 dbSNP
rs5589 418 dbSNP
rs866059258 420 dbSNP
rs5590 423 dbSNP
rs1247519146 430 dbSNP
rs1352895735 431 dbSNP
rs6125662 431 dbSNP
rs776278142 439 dbSNP
rs1355176260 446 dbSNP
rs987723553 448 dbSNP
rs1209673954 449 dbSNP
rs148519956 452 dbSNP
rs1441992831 461 dbSNP
rs1183080056 465 dbSNP
rs549157627 473 dbSNP
rs530741005 477 dbSNP
rs1185492788 489 dbSNP
rs963436118 499 dbSNP
rs1457574147 509 dbSNP
rs1161276856 511 dbSNP
rs1403662246 514 dbSNP
rs192386024 515 dbSNP
rs1005089735 536 dbSNP
rs1054298308 552 dbSNP
rs1315115636 556 dbSNP
rs1339533403 556 dbSNP
rs1457659962 556 dbSNP
rs188011892 557 dbSNP
rs1035569648 562 dbSNP
rs1001441641 563 dbSNP
rs1341834118 563 dbSNP
rs1258052654 569 dbSNP
rs1175235906 572 dbSNP
rs1469501492 587 dbSNP
rs1246917449 589 dbSNP
rs903098711 593 dbSNP
rs1374992054 594 dbSNP
rs548006331 601 dbSNP
rs1045067822 606 dbSNP
rs111778370 607 dbSNP
rs1449523321 613 dbSNP
rs946757189 614 dbSNP
rs1336850590 616 dbSNP
rs1400786087 629 dbSNP
rs1393939342 632 dbSNP
rs529778014 633 dbSNP
rs1319942909 640 dbSNP
rs893852008 648 dbSNP
rs1050095535 654 dbSNP
rs1277936888 656 dbSNP
rs1316619762 661 dbSNP
rs1225820035 666 dbSNP
rs1256678438 667 dbSNP
rs1052536380 678 dbSNP
rs1331806836 679 dbSNP
rs1264175632 683 dbSNP
rs920377556 685 dbSNP
rs974209650 694 dbSNP
rs1421161168 698 dbSNP
rs1481377623 700 dbSNP
rs1223571969 713 dbSNP
rs1346223268 717 dbSNP
rs1276984948 718 dbSNP
rs961590308 719 dbSNP
rs908773438 722 dbSNP
rs1370562574 738 dbSNP
rs935457354 739 dbSNP
rs912103010 744 dbSNP
rs1385281658 748 dbSNP
rs987710650 752 dbSNP
rs1022883808 768 dbSNP
rs1437422103 778 dbSNP
rs1398952935 781 dbSNP
rs1297979622 782 dbSNP
rs1390746546 784 dbSNP
rs5591 793 dbSNP
rs1302669578 803 dbSNP
rs1156913572 809 dbSNP
rs751468116 813 dbSNP
rs922199469 814 dbSNP
rs145697712 819 dbSNP
rs766261777 820 dbSNP
rs957434064 829 dbSNP
rs1452128299 830 dbSNP
rs1033136149 832 dbSNP
rs1015049339 833 dbSNP
rs1191550134 841 dbSNP
rs1188604910 844 dbSNP
rs1160684100 854 dbSNP
rs1380334015 856 dbSNP
rs1418729708 858 dbSNP
rs1156519938 859 dbSNP
rs1367048518 860 dbSNP
rs532980493 864 dbSNP
rs1426993269 868 dbSNP
rs1294468669 871 dbSNP
rs1367550129 878 dbSNP
rs1385558996 893 dbSNP
rs999078662 898 dbSNP
rs1377660841 899 dbSNP
rs200716128 900 dbSNP
rs983261698 900 dbSNP
rs1284223532 902 dbSNP
rs959859200 906 dbSNP
rs559348524 910 dbSNP
rs868361839 914 dbSNP
rs372104454 916 dbSNP
rs1222090752 923 dbSNP
rs1264585730 928 dbSNP
rs903047358 931 dbSNP
rs762672449 932 dbSNP
rs1215627609 935 dbSNP
rs1040668126 943 dbSNP
rs1238699490 947 dbSNP
rs1438612127 952 dbSNP
rs1443501026 959 dbSNP
rs1386760674 960 dbSNP
rs1008816118 962 dbSNP
rs1165970263 963 dbSNP
rs1217885910 964 dbSNP
rs1349597385 965 dbSNP
rs888746856 968 dbSNP
rs1050040306 975 dbSNP
rs1401652995 984 dbSNP
rs1347390467 998 dbSNP
rs750233498 1007 dbSNP
rs369837024 1011 dbSNP
rs1230686385 1015 dbSNP
rs1021555271 1017 dbSNP
rs1036142693 1028 dbSNP
rs13306025 1029 dbSNP
rs1457247772 1034 dbSNP
rs559325613 1037 dbSNP
rs555733181 1041 dbSNP
rs971681853 1043 dbSNP
rs1411158771 1044 dbSNP
rs1335909838 1057 dbSNP
rs916200145 1058 dbSNP
rs1394094544 1071 dbSNP
rs1168898436 1077 dbSNP
rs78077126 1078 dbSNP
rs182195333 1079 dbSNP
rs760508900 1081 dbSNP
rs1448830604 1085 dbSNP
rs1051912521 1087 dbSNP
rs1416685375 1091 dbSNP
rs932154229 1098 dbSNP
rs5592 1100 dbSNP
rs147409949 1101 dbSNP
rs565134874 1103 dbSNP
rs1264470864 1124 dbSNP
rs941689879 1126 dbSNP
rs76202125 1128 dbSNP
rs1235425242 1133 dbSNP
rs1196329184 1134 dbSNP
rs1264300946 1136 dbSNP
rs1477784058 1145 dbSNP
rs1169092103 1166 dbSNP
rs142779418 1171 dbSNP
rs1415149234 1174 dbSNP
rs1175420183 1177 dbSNP
rs535620896 1179 dbSNP
rs1402033254 1195 dbSNP
rs568518971 1197 dbSNP
rs1339532515 1198 dbSNP
rs959804228 1208 dbSNP
rs994449813 1215 dbSNP
rs1276617856 1226 dbSNP
rs1294883045 1229 dbSNP
rs1345596072 1238 dbSNP
rs898847563 1241 dbSNP
rs1036497895 1242 dbSNP
rs1318388354 1250 dbSNP
rs746174153 1255 dbSNP
rs887241955 1257 dbSNP
rs979875768 1258 dbSNP
rs1191916167 1260 dbSNP
rs1249017147 1262 dbSNP
rs1045893880 1263 dbSNP
rs1423065631 1271 dbSNP
rs1421763782 1274 dbSNP
rs950236726 1281 dbSNP
rs11453036 1286 dbSNP
rs1374561251 1288 dbSNP
rs1308416307 1290 dbSNP
rs1431210078 1291 dbSNP
rs1272579467 1294 dbSNP
rs991771863 1296 dbSNP
rs548941332 1299 dbSNP
rs190442573 1300 dbSNP
rs925996796 1307 dbSNP
rs1021919690 1309 dbSNP
rs1011529963 1317 dbSNP
rs1292417624 1319 dbSNP
rs1452694354 1336 dbSNP
rs958269238 1339 dbSNP
rs1245468305 1344 dbSNP
rs5593 1345 dbSNP
rs779474930 1346 dbSNP
rs5594 1350 dbSNP
rs1051859403 1353 dbSNP
rs996306150 1354 dbSNP
rs5595 1366 dbSNP
rs5596 1370 dbSNP
rs1402331477 1376 dbSNP
rs1446945686 1379 dbSNP
rs1028838622 1384 dbSNP
rs1252946121 1386 dbSNP
rs994730245 1390 dbSNP
rs11698535 1391 dbSNP
rs1014600397 1394 dbSNP
rs533225914 1395 dbSNP
rs185676888 1396 dbSNP
rs1271878858 1402 dbSNP
rs1459468744 1404 dbSNP
rs1199377536 1405 dbSNP
rs907513059 1412 dbSNP
rs1456615985 1414 dbSNP
rs1047367251 1422 dbSNP
rs1369257848 1432 dbSNP
rs938362949 1438 dbSNP
rs372738174 1440 dbSNP
rs1425716292 1448 dbSNP
rs950186103 1450 dbSNP
rs894661666 1452 dbSNP
rs1222392423 1464 dbSNP
rs1397424266 1466 dbSNP
rs756183315 1467 dbSNP
rs979821710 1470 dbSNP
rs1271362108 1481 dbSNP
rs1244585995 1482 dbSNP
rs1291770448 1484 dbSNP
rs969859858 1486 dbSNP
rs914444142 1487 dbSNP
rs1257523013 1494 dbSNP
rs529009164 1499 dbSNP
rs1337600866 1500 dbSNP
rs770498054 1503 dbSNP
rs1411473153 1504 dbSNP
rs1442009451 1505 dbSNP
rs554120177 1507 dbSNP
rs183057445 1508 dbSNP
rs1297311950 1512 dbSNP
rs368789937 1516 dbSNP
rs191631885 1517 dbSNP
rs557888086 1524 dbSNP
rs150600177 1527 dbSNP
rs954698220 1537 dbSNP
rs953189864 1538 dbSNP
rs572402290 1541 dbSNP
rs1351052438 1543 dbSNP
rs1162213939 1546 dbSNP
rs1028784885 1564 dbSNP
rs1400980169 1564 dbSNP
rs779986790 1574 dbSNP
rs1235540159 1583 dbSNP
rs1256623462 1591 dbSNP
rs1344581844 1595 dbSNP
rs5598 1603 dbSNP
rs6095553 1611 dbSNP
rs1488531500 1613 dbSNP
rs5599 1619 dbSNP
rs1037898759 1621 dbSNP
rs758390054 1631 dbSNP
rs1259629218 1643 dbSNP
rs886664854 1647 dbSNP
rs1198997953 1648 dbSNP
rs1047974229 1655 dbSNP
rs938310659 1656 dbSNP
rs568330035 1689 dbSNP
rs147989372 1691 dbSNP
rs5600 1695 dbSNP
rs1012023278 1702 dbSNP
rs1420736681 1705 dbSNP
rs765056205 1706 dbSNP
rs1360528080 1711 dbSNP
rs761432064 1712 dbSNP
rs1302086590 1720 dbSNP
rs1268767631 1726 dbSNP
rs1330654698 1728 dbSNP
rs753479496 1734 dbSNP
rs144433871 1739 dbSNP
rs956075539 1740 dbSNP
rs924513689 1752 dbSNP
rs986757487 1757 dbSNP
rs954688164 1765 dbSNP
rs1055963130 1767 dbSNP
rs1215661694 1775 dbSNP
rs1030367317 1790 dbSNP
rs569876620 1792 dbSNP
rs763683858 1801 dbSNP
rs551595389 1807 dbSNP
rs780602636 1811 dbSNP
rs1210303034 1815 dbSNP
rs1006353847 1818 dbSNP
rs1314853443 1819 dbSNP
rs1000402932 1824 dbSNP
rs1452103816 1826 dbSNP
rs373895388 1833 dbSNP
rs1179937280 1835 dbSNP
rs1386954017 1839 dbSNP
rs1369317185 1844 dbSNP
rs904754116 1852 dbSNP
rs1438650115 1853 dbSNP
rs1439569682 1859 dbSNP
rs1343741269 1862 dbSNP
rs886606978 1875 dbSNP
rs1294695482 1878 dbSNP
rs571620614 1879 dbSNP
rs911898232 1881 dbSNP
rs565960167 1885 dbSNP
rs932075400 1904 dbSNP
rs922055176 1907 dbSNP
rs1177284029 1910 dbSNP
rs973207520 1919 dbSNP
rs6095552 1929 dbSNP
rs1044062942 1933 dbSNP
rs866676593 1948 dbSNP
rs1200010650 1963 dbSNP
rs774873402 1980 dbSNP
rs1457051542 1981 dbSNP
rs1175176900 1983 dbSNP
rs907772994 1987 dbSNP
rs1054616719 1989 dbSNP
rs1425965326 1996 dbSNP
rs983788293 2000 dbSNP
rs1465446932 2005 dbSNP
rs1417797965 2007 dbSNP
rs1460304933 2013 dbSNP
rs1333455927 2027 dbSNP
rs1401053758 2034 dbSNP
rs1441553004 2036 dbSNP
rs1296736248 2040 dbSNP
rs141655556 2043 dbSNP
rs970398750 2050 dbSNP
rs1206757604 2052 dbSNP
rs1024651108 2055 dbSNP
rs1484871932 2059 dbSNP
rs934509653 2069 dbSNP
rs1011951229 2076 dbSNP
rs959105901 2077 dbSNP
rs561476869 2089 dbSNP
rs924475456 2090 dbSNP
rs1233772258 2101 dbSNP
rs1316831957 2104 dbSNP
rs1349556482 2126 dbSNP
rs549854934 2137 dbSNP
rs1483342272 2138 dbSNP
rs1182833292 2141 dbSNP
rs1257176889 2147 dbSNP
rs1474522915 2149 dbSNP
rs1232906377 2150 dbSNP
rs556410274 2153 dbSNP
rs1163786144 2158 dbSNP
rs921201890 2159 dbSNP
rs1361140002 2182 dbSNP
rs1466710042 2183 dbSNP
rs1312063651 2200 dbSNP
rs1000350675 2204 dbSNP
rs1319721245 2207 dbSNP
rs974710956 2214 dbSNP
rs531296360 2217 dbSNP
rs564386557 2218 dbSNP
rs538125629 2219 dbSNP
rs1303768603 2220 dbSNP
rs1467962226 2224 dbSNP
rs985317557 2225 dbSNP
rs1312418497 2226 dbSNP
rs950904769 2234 dbSNP
rs1373855104 2236 dbSNP
rs1173188233 2238 dbSNP
rs1026468956 2244 dbSNP
rs1003059652 2246 dbSNP
rs1208921534 2249 dbSNP
rs1277741094 2250 dbSNP
rs907437006 2253 dbSNP
rs1051709048 2257 dbSNP
rs1264591444 2269 dbSNP
rs562622726 2276 dbSNP
rs1023182194 2277 dbSNP
rs1427286712 2290 dbSNP
rs1037780532 2291 dbSNP
rs1173320648 2296 dbSNP
rs941847240 2300 dbSNP
rs1012546055 2303 dbSNP
rs1344565617 2304 dbSNP
rs5601 2317 dbSNP
rs182246025 2320 dbSNP
rs971062458 2325 dbSNP
rs917877712 2327 dbSNP
rs1054206402 2328 dbSNP
rs190318428 2331 dbSNP
rs1219276168 2343 dbSNP
rs959055002 2347 dbSNP
rs542130777 2351 dbSNP
rs1478419785 2352 dbSNP
rs1193062496 2353 dbSNP
rs1393522094 2353 dbSNP
rs1441732648 2353 dbSNP
rs1159027387 2359 dbSNP
rs1020879606 2364 dbSNP
rs1050893383 2368 dbSNP
rs1325527419 2374 dbSNP
rs879347862 2376 dbSNP
rs574779897 2382 dbSNP
rs921146291 2385 dbSNP
rs1326325780 2389 dbSNP
rs1240339653 2391 dbSNP
rs548611805 2411 dbSNP
rs1278574760 2415 dbSNP
rs1314136525 2417 dbSNP
rs774820807 2418 dbSNP
rs1030564642 2421 dbSNP
rs943379262 2422 dbSNP
rs1469262533 2427 dbSNP
rs1213174722 2429 dbSNP
rs375677241 2430 dbSNP
rs1353883986 2434 dbSNP
rs984878648 2437 dbSNP
rs1179561966 2441 dbSNP
rs996121960 2448 dbSNP
rs5602 2479 dbSNP
rs1430594241 2480 dbSNP
rs1414477128 2489 dbSNP
rs1037728377 2490 dbSNP
rs1162179481 2493 dbSNP
rs1401771864 2497 dbSNP
rs942113865 2498 dbSNP
rs1327813523 2501 dbSNP
rs919360064 2509 dbSNP
rs886241421 2517 dbSNP
rs981542526 2531 dbSNP
rs1048016048 2538 dbSNP
rs949268331 2539 dbSNP
rs1166203793 2541 dbSNP
rs773419535 2544 dbSNP
rs536100137 2547 dbSNP
rs1372412758 2554 dbSNP
rs971542172 2556 dbSNP
rs1023170967 2561 dbSNP
rs1320180548 2564 dbSNP
rs558013188 2567 dbSNP
rs529797550 2568 dbSNP
rs1436244257 2572 dbSNP
rs957049567 2576 dbSNP
rs1255085200 2583 dbSNP
rs924942794 2590 dbSNP
rs569033471 2591 dbSNP
rs754673249 2591 dbSNP
rs1425644190 2592 dbSNP
rs1465735230 2609 dbSNP
rs1166756409 2611 dbSNP
rs1186985588 2621 dbSNP
rs979170315 2622 dbSNP
rs966853640 2626 dbSNP
rs1483165856 2628 dbSNP
rs1274728483 2629 dbSNP
rs1356566170 2632 dbSNP
rs1414549725 2640 dbSNP
rs1292025813 2642 dbSNP
rs1342917382 2643 dbSNP
rs1020742448 2644 dbSNP
rs1033117343 2646 dbSNP
rs998552613 2647 dbSNP
rs1250792487 2655 dbSNP
rs989366953 2660 dbSNP
rs1202336421 2662 dbSNP
rs954905056 2668 dbSNP
rs902907271 2670 dbSNP
rs1030512316 2685 dbSNP
rs996405242 2686 dbSNP
rs539630143 2690 dbSNP
rs780242993 2693 dbSNP
rs1050838309 2710 dbSNP
rs1191845179 2714 dbSNP
rs997978075 2717 dbSNP
rs564327975 2727 dbSNP
rs1193558239 2728 dbSNP
rs1016688606 2729 dbSNP
rs1006257614 2750 dbSNP
rs550923361 2750 dbSNP
rs886502389 2750 dbSNP
rs1039614461 2752 dbSNP
rs547671635 2767 dbSNP
rs1235639370 2775 dbSNP
rs1354142203 2776 dbSNP
rs867434306 2778 dbSNP
rs1049507884 2779 dbSNP
rs1410874962 2785 dbSNP
rs535345017 2790 dbSNP
rs10637368 2798 dbSNP
rs1208504463 2798 dbSNP
rs1347363736 2798 dbSNP
rs1443557432 2798 dbSNP
rs60173186 2798 dbSNP
rs1382840600 2799 dbSNP
rs1394128478 2805 dbSNP
rs5603 2810 dbSNP
rs1391049632 2811 dbSNP
rs5604 2817 dbSNP
rs549508220 2823 dbSNP
rs1391452310 2825 dbSNP
rs981531040 2828 dbSNP
rs1167227238 2830 dbSNP
rs1454620063 2831 dbSNP
rs1462902727 2832 dbSNP
rs746033782 2836 dbSNP
rs971530786 2840 dbSNP
rs6090991 2841 dbSNP
rs991739864 2842 dbSNP
rs1311717697 2846 dbSNP
rs1163903148 2848 dbSNP
rs5605 2852 dbSNP
rs138570596 2858 dbSNP
rs1258945660 2859 dbSNP
rs1234409631 2864 dbSNP
rs5606 2865 dbSNP
rs1213811541 2866 dbSNP
rs551820945 2872 dbSNP
rs1033281572 2873 dbSNP
rs1466870186 2881 dbSNP
rs527902824 2883 dbSNP
rs1436897726 2889 dbSNP
rs998892012 2892 dbSNP
rs967036128 2899 dbSNP
rs1250793392 2901 dbSNP
rs1029414051 2907 dbSNP
rs945085909 2913 dbSNP
rs1215076440 2921 dbSNP
rs5607 2925 dbSNP
rs1333301633 2928 dbSNP
rs997966633 2929 dbSNP
rs1438792523 2930 dbSNP
rs1229377272 2934 dbSNP
rs913628712 2937 dbSNP
rs560436076 2938 dbSNP
rs1304554048 2940 dbSNP
rs899654212 2941 dbSNP
rs542519023 2948 dbSNP
rs1272459207 2953 dbSNP
rs1332117886 2959 dbSNP
rs1199951490 2964 dbSNP
rs575022852 2970 dbSNP
rs986582280 2971 dbSNP
rs541371741 2972 dbSNP
rs1176992092 2975 dbSNP
rs1248790089 2978 dbSNP
rs1476381095 2979 dbSNP
rs145111687 2980 dbSNP
rs5608 2982 dbSNP
rs5609 2983 dbSNP
rs1327979457 2993 dbSNP
rs974933717 2994 dbSNP
rs138269593 2995 dbSNP
rs1392196590 3000 dbSNP
rs1325073473 3010 dbSNP
rs1016537309 3011 dbSNP
rs929306620 3013 dbSNP
rs1409838941 3014 dbSNP
rs1295591909 3019 dbSNP
rs919293582 3024 dbSNP
rs1469291238 3025 dbSNP
rs5610 3029 dbSNP
rs950759712 3030 dbSNP
rs950164108 3033 dbSNP
rs1026791004 3036 dbSNP
rs1257463709 3039 dbSNP
rs1474490850 3053 dbSNP
rs534236686 3055 dbSNP
rs5611 3057 dbSNP
rs371983122 3059 dbSNP
rs5612 3060 dbSNP
rs936193090 3062 dbSNP
rs1377474660 3067 dbSNP
rs1209828865 3068 dbSNP
rs926157940 3069 dbSNP
rs535856704 3070 dbSNP
rs1223627504 3074 dbSNP
rs1270678669 3080 dbSNP
rs781197932 3082 dbSNP
rs5613 3087 dbSNP
rs1212265114 3097 dbSNP
rs1303016664 3108 dbSNP
rs1348090824 3113 dbSNP
rs1029359986 3117 dbSNP
rs1305983892 3119 dbSNP
rs1484985134 3136 dbSNP
rs976479683 3140 dbSNP
rs1218637164 3143 dbSNP
rs1243198836 3150 dbSNP
rs1002076868 3151 dbSNP
rs903751371 3152 dbSNP
rs964111037 3169 dbSNP
rs1370251809 3172 dbSNP
rs5614 3182 dbSNP
rs945009506 3198 dbSNP
rs1402229630 3200 dbSNP
rs1318939295 3201 dbSNP
rs151251509 3202 dbSNP
rs1315928961 3208 dbSNP
rs1344510446 3219 dbSNP
rs1428064621 3222 dbSNP
rs1399967485 3223 dbSNP
rs1375668914 3225 dbSNP
rs1327284839 3226 dbSNP
rs1371286160 3226 dbSNP
rs201800523 3226 dbSNP
rs35250217 3226 dbSNP
rs755740528 3226 dbSNP
rs920461574 3226 dbSNP
rs1225803457 3227 dbSNP
rs1285637547 3227 dbSNP
rs1175060585 3230 dbSNP
rs535787619 3231 dbSNP
rs1254901532 3233 dbSNP
rs1051249283 3236 dbSNP
rs568242658 3240 dbSNP
rs368129919 3241 dbSNP
rs1036589437 3245 dbSNP
rs1471067047 3248 dbSNP
rs1158879606 3260 dbSNP
rs5615 3262 dbSNP
rs180825031 3264 dbSNP
rs1398814624 3265 dbSNP
rs1166485888 3266 dbSNP
rs1240906169 3271 dbSNP
rs570087756 3272 dbSNP
rs1323531826 3273 dbSNP
rs888327477 3275 dbSNP
rs543768732 3277 dbSNP
rs1444845276 3283 dbSNP
rs778842894 3289 dbSNP
rs1280432968 3291 dbSNP
rs1443412626 3294 dbSNP
rs1373260739 3297 dbSNP
rs144588171 3298 dbSNP
rs897814353 3303 dbSNP
rs1275589356 3304 dbSNP
rs1045686850 3314 dbSNP
rs1335594962 3315 dbSNP
rs1213119790 3322 dbSNP
rs1288017830 3328 dbSNP
rs1208951286 3332 dbSNP
rs527345306 3333 dbSNP
rs1182265222 3334 dbSNP
rs950070143 3343 dbSNP
rs909424153 3352 dbSNP
rs556629605 3353 dbSNP
rs142434641 3354 dbSNP
rs1460513959 3359 dbSNP
rs1026320625 3362 dbSNP
rs371939811 3363 dbSNP
rs1363980885 3365 dbSNP
rs1327747424 3373 dbSNP
rs1354383856 3374 dbSNP
rs530455650 3374 dbSNP
rs1268399958 3382 dbSNP
rs188583893 3388 dbSNP
rs563026471 3391 dbSNP
rs544888526 3397 dbSNP
rs926173764 3398 dbSNP
rs1432431923 3404 dbSNP
rs1374527996 3405 dbSNP
rs977654486 3405 dbSNP
rs1002024748 3408 dbSNP
rs1170499599 3409 dbSNP
rs946303049 3411 dbSNP
rs183811646 3415 dbSNP
rs1258168360 3428 dbSNP
rs1417977206 3429 dbSNP
rs922867910 3431 dbSNP
rs565237882 3435 dbSNP
rs1167000489 3436 dbSNP
rs1393847275 3439 dbSNP
rs540767493 3443 dbSNP
rs1428246136 3448 dbSNP
rs1376596806 3450 dbSNP
rs1414644235 3453 dbSNP
rs492195 3458 dbSNP
rs1228208100 3466 dbSNP
rs1259987133 3468 dbSNP
rs553961073 3472 dbSNP
rs892093000 3474 dbSNP
rs983922560 3481 dbSNP
rs952640810 3487 dbSNP
rs1233730231 3489 dbSNP
rs5617 3491 dbSNP
rs1485212641 3492 dbSNP
rs1025456251 3493 dbSNP
rs993982439 3497 dbSNP
rs906433551 3502 dbSNP
rs5618 3503 dbSNP
rs1191783292 3505 dbSNP
rs1387972682 3523 dbSNP
rs1455250853 3526 dbSNP
rs1024858146 3529 dbSNP
rs541643274 3531 dbSNP
rs535071355 3536 dbSNP
rs1171379757 3537 dbSNP
rs920996929 3537 dbSNP
rs894513801 3539 dbSNP
rs909384054 3541 dbSNP
rs1363295437 3543 dbSNP
rs1056273597 3544 dbSNP
rs936126515 3548 dbSNP
rs904668558 3549 dbSNP
rs1304429787 3557 dbSNP
rs1041884585 3562 dbSNP
rs1346928073 3569 dbSNP
rs946209820 3576 dbSNP
rs1412747403 3577 dbSNP
rs919541257 3580 dbSNP
rs374524770 3584 dbSNP
rs960726380 3588 dbSNP
rs752557307 3590 dbSNP
rs1469409657 3598 dbSNP
rs1033735759 3614 dbSNP
rs5619 3614 dbSNP
rs968247710 3615 dbSNP
rs1174343566 3620 dbSNP
rs1366093904 3627 dbSNP
rs1454703607 3628 dbSNP
rs1158085430 3633 dbSNP
rs1386627322 3639 dbSNP
rs1463048733 3647 dbSNP
rs1022138047 3649 dbSNP
rs942354097 3650 dbSNP
rs145441768 3652 dbSNP
rs192192130 3660 dbSNP
rs1308792262 3664 dbSNP
rs1336290685 3666 dbSNP
rs543007820 3669 dbSNP
rs984259498 3672 dbSNP
rs763743584 3676 dbSNP
rs4647 3680 dbSNP
rs997776011 3681 dbSNP
rs1272178683 3692 dbSNP
rs774141400 3696 dbSNP
rs972508010 3707 dbSNP
rs1179097161 3711 dbSNP
rs865883696 3715 dbSNP
rs1479801033 3717 dbSNP
rs190108891 3725 dbSNP
rs1420042125 3729 dbSNP
rs1182139361 3730 dbSNP
rs1214454652 3732 dbSNP
rs558121669 3754 dbSNP
rs1468836223 3757 dbSNP
rs1165696725 3760 dbSNP
rs1349521156 3761 dbSNP
rs1456528011 3769 dbSNP
rs1300100897 3770 dbSNP
rs1397031651 3771 dbSNP
rs1024843686 3777 dbSNP
rs1286434124 3778 dbSNP
rs1357235116 3779 dbSNP
rs1328219008 3795 dbSNP
rs1012198880 3797 dbSNP
rs1233403996 3797 dbSNP
rs1292066822 3803 dbSNP
rs554200691 3809 dbSNP
rs888225488 3812 dbSNP
rs372027355 3819 dbSNP
rs545217861 3821 dbSNP
rs1307446236 3837 dbSNP
rs1476434692 3842 dbSNP
rs1188762768 3848 dbSNP
rs548801650 3864 dbSNP
rs142525012 3868 dbSNP
rs1172861608 3869 dbSNP
rs919496504 3871 dbSNP
rs992423953 3877 dbSNP
rs1305911741 3882 dbSNP
rs1370789665 3884 dbSNP
rs73611741 3894 dbSNP
rs1041830331 3897 dbSNP
rs1376388586 3900 dbSNP
rs1215787736 3907 dbSNP
rs1295871944 3909 dbSNP
rs185114103 3914 dbSNP
rs551303946 3926 dbSNP
rs1461380225 3928 dbSNP
rs980818952 3932 dbSNP
rs1486850277 3941 dbSNP
rs1364695519 3949 dbSNP
rs532841842 3951 dbSNP
rs760097103 3956 dbSNP
rs193282905 3957 dbSNP
rs1407584982 3962 dbSNP
rs942989967 3976 dbSNP
rs116660599 3987 dbSNP
rs188772848 3988 dbSNP
rs956779704 3994 dbSNP
rs1428257560 3995 dbSNP
rs930983175 3999 dbSNP
rs998059109 4001 dbSNP
rs561239167 4007 dbSNP
rs17181521 4020 dbSNP
rs760094525 4024 dbSNP
rs1175331243 4032 dbSNP
rs1357304443 4035 dbSNP
rs574551293 4037 dbSNP
rs1432321604 4039 dbSNP
rs183950127 4045 dbSNP
rs774961913 4047 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acGGUCGGAGCGGGUCg 5'
            ||| || ||||||| 
Target 5' agCCA-CCGCGCCCAGc 3'
20 - 35
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_000961 | 3UTR | AAGGAAGACACAGCCCAGACAAGAUGGCUGGAAGGAGCCAGCCAGGACUCCUUAGACUGAUCAAGCCAAAAAAGAAGGUGCCGAUUUCAUGCAUUCUAGUGCAGAAGCCCCAACUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000244043.4 | 3UTR | UGCUGGGAUUACAGGUGUGAGCCACCGCGCCCAGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-4486 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT254654 NF2 neurofibromin 2 2 2
MIRT458684 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT470845 PLXND1 plexin D1 2 2
MIRT493011 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT497264 GRK6 G protein-coupled receptor kinase 6 2 2
MIRT497675 SYNGR1 synaptogyrin 1 2 2
MIRT498219 TLN2 talin 2 2 2
MIRT498310 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT504048 TOMM5 translocase of outer mitochondrial membrane 5 2 2
MIRT519959 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT531521 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT533144 WNT10A Wnt family member 10A 2 2
MIRT533541 TPR translocated promoter region, nuclear basket protein 2 2
MIRT533681 TMEM86A transmembrane protein 86A 2 2
MIRT540321 PIGR polymeric immunoglobulin receptor 2 2
MIRT540719 GUF1 GUF1 homolog, GTPase 2 2
MIRT541566 ZNF43 zinc finger protein 43 2 4
MIRT541787 TBCCD1 TBCC domain containing 1 2 2
MIRT541925 ORC1 origin recognition complex subunit 1 2 4
MIRT542232 FUT9 fucosyltransferase 9 2 2
MIRT542285 POLR3K RNA polymerase III subunit K 2 2
MIRT542299 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 2 4
MIRT542368 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542441 C3 complement C3 2 4
MIRT542475 APOC3 apolipoprotein C3 2 2
MIRT542535 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542640 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542788 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT552104 PPP1R1A protein phosphatase 1 regulatory inhibitor subunit 1A 2 2
MIRT564913 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT568606 ACVR2A activin A receptor type 2A 2 2
MIRT607389 LANCL3 LanC like 3 2 2
MIRT607451 ZNF543 zinc finger protein 543 2 2
MIRT610058 MYBPC1 myosin binding protein C, slow type 2 2
MIRT610793 KLK2 kallikrein related peptidase 2 2 2
MIRT617176 GOSR2 golgi SNAP receptor complex member 2 2 2
MIRT620579 WBSCR27 methyltransferase like 27 2 4
MIRT622085 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622542 PXMP4 peroxisomal membrane protein 4 2 2
MIRT630009 PDE6B phosphodiesterase 6B 2 2
MIRT631813 PTDSS2 phosphatidylserine synthase 2 2 2
MIRT632721 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT632757 MED28 mediator complex subunit 28 2 2
MIRT634821 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT635255 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT637082 SELPLG selectin P ligand 2 2
MIRT637357 ZNF460 zinc finger protein 460 2 2
MIRT637472 DEFB105B defensin beta 105B 2 4
MIRT637504 DEFB105A defensin beta 105A 2 4
MIRT639022 AAK1 AP2 associated kinase 1 2 2
MIRT641012 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT642170 HEBP2 heme binding protein 2 2 2
MIRT648977 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT650515 UFM1 ubiquitin fold modifier 1 2 2
MIRT650949 INMT indolethylamine N-methyltransferase 2 2
MIRT658354 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT660736 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT662191 MEI1 meiotic double-stranded break formation protein 1 2 2
MIRT663045 SLC16A4 solute carrier family 16 member 4 2 2
MIRT664811 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT665161 SF3A1 splicing factor 3a subunit 1 2 4
MIRT665346 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT666493 SBNO1 strawberry notch homolog 1 2 2
MIRT666545 RNF115 ring finger protein 115 2 2
MIRT669351 BMP3 bone morphogenetic protein 3 2 2
MIRT669904 KIAA0754 KIAA0754 2 4
MIRT670323 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670430 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT670672 KIAA1551 KIAA1551 2 2
MIRT670746 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670998 PTGIS prostaglandin I2 synthase 2 2
MIRT671290 RPL37A ribosomal protein L37a 2 2
MIRT671469 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 2
MIRT671833 STIL STIL, centriolar assembly protein 2 2
MIRT673006 TAF1 TATA-box binding protein associated factor 1 2 2
MIRT675881 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT678625 OLFML2A olfactomedin like 2A 2 2
MIRT678790 NUPL2 nucleoporin like 2 2 2
MIRT679560 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT681032 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT682480 LIX1L limb and CNS expressed 1 like 2 2
MIRT682758 MDM2 MDM2 proto-oncogene 2 2
MIRT682810 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682867 C9orf156 tRNA methyltransferase O 2 2
MIRT689233 RPS19 ribosomal protein S19 2 2
MIRT689305 C5AR2 complement component 5a receptor 2 2 2
MIRT689363 ZNF101 zinc finger protein 101 2 2
MIRT689629 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT689654 RBM23 RNA binding motif protein 23 2 2
MIRT690148 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT691407 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT691847 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT692234 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT694320 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694365 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT696215 LYZ lysozyme 2 2
MIRT697230 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT700487 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT700612 PRKCA protein kinase C alpha 2 2
MIRT702456 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702990 HERPUD2 HERPUD family member 2 2 2
MIRT703998 EIF5A2 eukaryotic translation initiation factor 5A2 2 2
MIRT704701 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2 2
MIRT712481 FSTL3 follistatin like 3 2 2
MIRT712781 ZNF154 zinc finger protein 154 2 2
MIRT714369 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT722570 C1orf95 stum, mechanosensory transduction mediator homolog 2 2
MIRT722839 C17orf102 chromosome 17 open reading frame 102 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4486 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-4486 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-4486 Doxorubicin 31703 NSC123127 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4486 Curcumin 969516 NSC32982 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4486 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4486 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4486 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4486 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-miR-4486 Cisplatin 5460033 NSC119875 approved sensitive Low Gastric Cancer cell line (SGC-7901)
hsa-mir-4486 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4486 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4486 Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-4486 Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4486 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-4486 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4486 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4486 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-4486 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

Error report submission