pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ERCC6L2   
Synonyms BMFS2, C9orf102, RAD26L, SR278
Description ERCC excision repair 6 like 2
Transcript NM_001010895   
Expression
Putative miRNA Targets on ERCC6L2
3'UTR of ERCC6L2
(miRNA target sites are highlighted)
>ERCC6L2|NM_001010895|3'UTR
   1 ACTTCTTCTCTGACCTTTTCAATAATATTTTAAATACAGTTTTTCTTCCTCAGGAAATCTGAAATACAATTGCTGTTGCC
  81 TTTTCAGAGAAACTTTTGGTTTTCTTTATCAAAAATGCCTTGGAATTTTTACTTTTAGAGAATAAGAAATGAATTATTGT
 161 ACCTCTAAACTAAGATTTTCCCATGCATAATTACAAATAATGCACACACACAAATGTATATGCTGGGTAGTATGAACTCC
 241 AAGGCAATTTTAAATAGGCAGAGAGAAGTTTATAGTTTTGAAAACAGCTGCTGAAGTCAGGAACTAAAAAAAGAGGTTTT
 321 CCTAAATAAACAAAAATATAAAATGTGTTTTAATTAAAAGTTACCAAATACTCCCTGAGATGTACTCTCATGTCTCATGG
 401 AGATTTTTGTTTTCTGTTCCCAATAAAAATTCCACACCAGTATTTTAAACTCTCCCTGTTGTGTTCATCCTCAGCATACA
 481 GATGTTTCTTATTCCTCAAACAAAATATTTTATATCCTTTTTTAAAAAAATCTTTAAGTTCTTTTATATACCGGAATACT
 561 AAGGATATTAACCTATTTTCTAATTGATATTCATATAGGTATCATAAAATCCTGGAGTATCATCTTTTTCAACCTCCTCA
 641 TGGTATAGATGAGGAAACTGAGTCTTAGAGAACTTCAGGATATTTCTCTTGACTTCCAGGACTTTGTAGTAAAATCTTAA
 721 TGTACTTCATTTATTCAGTAAGTACCATAAAGGCAGTTCAAGGAGCAATTGGTTCCTGTCCTTGAGGAACTTAAACCATC
 801 TTGACCGGAGGTGGAAGAGAACGTTTACATAATAACCATGCAATGTCAGGAATCGTATGCTGAACAAGTTAAACAGTAGA
 881 CCATGGATGGCTGGGGGAGAGGAAGGTATATATTATTTGAATCCTATAAATGTTGTTACTATTATACAGTTTCTGATATA
 961 TACTGCTGAGTTTCTATTTTATAGTAACTATATTTGATTCTGAATTCAGTGGCCCATTTGGAGTCCTACTTTTTGGGGTT
1041 TTTTCCCCTTGCTTTTTAAATACGCTGTTTCTTTCATGAATTTGTTCTTTCCAGTTTCCCTTTTCATATCAATAACTTTG
1121 TTTGCCCTCCAGCTCCCAAACCCAGCTGCTACCTCCATCTCAGAGTACTACTTGACATGCCTATATTGATGTTAAAGTCA
1201 ATTGTCTATAAAAATATTAGCATTTTATTATTTATCCTGTTTTCTGTCATATATGACATAGTTACCTGTTTTTATCAGAA
1281 TAACCACCTATTTCTTTGTTAAACAAGTGTTATATAAGACATATCAGGATGACAGGTTATTAAGTAGAAAAAGTTCCCTT
1361 GTTTATCGTGCCACTGCACTCCAGCCTGGGGAACAAAGCAAGAGACTTGTCTCAAAAACAAAAAACAAAAACAAAAAAAA
1441 GTTCTCTTGTTCACTGGTTATTCTAAGAATATCTTGTTTCACCTTCAGAAGTGTTTATTAATGACAGGACCATCCATGTC
1521 TTACATTTTCTTTTTTAAAAATATCTTTTAAGTTCTTTAATATACCAGAACACTAAGAATATTAACCTATTTTCTAATTG
1601 ATATTAATAAGGGGTGACAAGGCCATCCATGCCCTACATTTGTCTTGCTAGGCATATCATTGGCACTTGATTATTAAGTT
1681 AAATTTTGAATTAAAATTACTCATTTGTCATCAATCAGAATGTAAATTTATTCAGGATTGGTTAGATTCATGCTGCTTTG
1761 GGCCAAAAGGTGCTTCTAAATATTATTATTAGCCCCATATAATGGGAGTACCTATCATAAAGTAAAAGGAGTATTTCACT
1841 TCATGTGAGACATTTTTAATTTTTAAAGGTTGTATAAAATCTCTTTTAAAATGTTTTAAGATGTAAAAATTTGAATATTT
1921 ACACTTATAATCTTATGATTTCTGGGCAATTTCATTCTGTTTTGCATTGACTTTCCATTATCTATATTATGGTTTCTCTT
2001 CAAAGATAGATATTGAGAGTTCATTTTACAAGTATTTGTTGAGCATCTGCTAAATGTCAGGTACTGTTCATAGAGCTTTG
2081 CATACATAAAAGAACAAAATAAACAAAACGATCCTGTCTAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            ||||   |||||:|:||| 
Target 5' ttTGCA---TTGACTTTCCAt 3'
1961 - 1978 136.00 -15.60
2
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||  |||  | |||||| 
Target 5' ttTGC--CCTCCAGCTCCCAa 3'
1121 - 1139 127.00 -14.40
3
miRNA  3' ugacGUCGGAA---CUGGAGG-GUc 5'
              || |:||    |||||| || 
Target 5' gtatCATCTTTTTCAACCTCCTCAt 3'
617 - 641 121.00 -10.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30147557 6 COSMIC
COSN30150415 9 COSMIC
COSN30461845 9 COSMIC
COSN30505849 37 COSMIC
COSN29741179 40 COSMIC
COSN9288276 69 COSMIC
COSN31528240 128 COSMIC
COSN19313712 265 COSMIC
COSN16623749 880 COSMIC
COSN32057839 960 COSMIC
COSN29807009 1077 COSMIC
COSN31963075 1369 COSMIC
COSN2334824 1745 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1177462839 1 dbSNP
rs748233675 2 dbSNP
rs1456026172 3 dbSNP
rs1353991330 4 dbSNP
rs764875771 5 dbSNP
rs750006704 6 dbSNP
rs758096483 7 dbSNP
rs1205113432 11 dbSNP
rs1204722783 15 dbSNP
rs779658402 16 dbSNP
rs1257518351 17 dbSNP
rs897735895 19 dbSNP
rs1398447798 21 dbSNP
rs993349380 22 dbSNP
rs1036027937 23 dbSNP
rs201831168 27 dbSNP
rs746828871 28 dbSNP
rs1311285503 40 dbSNP
rs754836221 41 dbSNP
rs772512895 43 dbSNP
rs541957312 47 dbSNP
rs748133549 52 dbSNP
rs1220783615 68 dbSNP
rs187477905 76 dbSNP
rs1237875816 87 dbSNP
rs916978399 100 dbSNP
rs1476461606 101 dbSNP
rs991732278 124 dbSNP
rs757511130 128 dbSNP
rs968488102 129 dbSNP
rs568533870 133 dbSNP
rs530861349 144 dbSNP
rs1044137145 160 dbSNP
rs374403172 165 dbSNP
rs978410028 171 dbSNP
rs589362 187 dbSNP
rs571135290 189 dbSNP
rs1327653038 197 dbSNP
rs934333931 201 dbSNP
rs192286402 224 dbSNP
rs547249693 225 dbSNP
rs1015628752 226 dbSNP
rs1345698348 230 dbSNP
rs1485837710 236 dbSNP
rs1375604087 249 dbSNP
rs1285058410 255 dbSNP
rs1214295690 257 dbSNP
rs1355803548 258 dbSNP
rs568703802 265 dbSNP
rs1309211718 270 dbSNP
rs933466018 273 dbSNP
rs1051073861 276 dbSNP
rs1224464359 276 dbSNP
rs536046769 294 dbSNP
rs780338241 301 dbSNP
rs184817706 305 dbSNP
rs1028426767 315 dbSNP
rs1298008391 320 dbSNP
rs189136620 327 dbSNP
rs557433288 337 dbSNP
rs573115503 344 dbSNP
rs572324199 357 dbSNP
rs576404800 365 dbSNP
rs686048 381 dbSNP
rs555229296 383 dbSNP
rs1262151703 384 dbSNP
rs1241610509 385 dbSNP
rs1214227992 391 dbSNP
rs1481011653 391 dbSNP
rs1023248443 392 dbSNP
rs1179246279 397 dbSNP
rs968437797 398 dbSNP
rs980218044 407 dbSNP
rs927070764 415 dbSNP
rs533454159 416 dbSNP
rs1235329630 417 dbSNP
rs1356384287 419 dbSNP
rs1469653164 420 dbSNP
rs1277941303 423 dbSNP
rs1398599605 426 dbSNP
rs557986859 428 dbSNP
rs1289891809 432 dbSNP
rs1457853896 435 dbSNP
rs1347563225 439 dbSNP
rs1048927925 451 dbSNP
rs1386765874 465 dbSNP
rs371067527 467 dbSNP
rs1430013037 473 dbSNP
rs1316943117 477 dbSNP
rs1262185060 481 dbSNP
rs976828538 498 dbSNP
rs879790403 502 dbSNP
rs1251187746 504 dbSNP
rs1406647657 513 dbSNP
rs1281359635 517 dbSNP
rs73656590 524 dbSNP
rs998191516 524 dbSNP
rs955165322 525 dbSNP
rs1386664992 531 dbSNP
rs889912583 542 dbSNP
rs986305926 553 dbSNP
rs910746562 554 dbSNP
rs544000179 555 dbSNP
rs762830827 566 dbSNP
rs1037713767 568 dbSNP
rs1463222845 572 dbSNP
rs1024514817 576 dbSNP
rs1175148863 585 dbSNP
rs971002217 588 dbSNP
rs919343297 596 dbSNP
rs927031634 597 dbSNP
rs1468915079 599 dbSNP
rs563446766 602 dbSNP
rs1237651794 606 dbSNP
rs1194248464 633 dbSNP
rs1203619163 637 dbSNP
rs1252218620 640 dbSNP
rs1233044278 644 dbSNP
rs192189557 649 dbSNP
rs184510556 659 dbSNP
rs1235686760 670 dbSNP
rs576329321 671 dbSNP
rs1328729896 681 dbSNP
rs940526905 683 dbSNP
rs1396832294 685 dbSNP
rs189383832 697 dbSNP
rs779186617 709 dbSNP
rs1302035510 719 dbSNP
rs1040278734 722 dbSNP
rs923193327 723 dbSNP
rs1439029043 724 dbSNP
rs933979061 734 dbSNP
rs1179798683 743 dbSNP
rs1267427844 748 dbSNP
rs1251585237 757 dbSNP
rs115920293 768 dbSNP
rs1183055601 769 dbSNP
rs1282940479 770 dbSNP
rs547018848 779 dbSNP
rs1044338504 785 dbSNP
rs1365923839 786 dbSNP
rs1212175242 790 dbSNP
rs904327875 793 dbSNP
rs1000038669 795 dbSNP
rs1031386553 797 dbSNP
rs889853876 799 dbSNP
rs1451087459 801 dbSNP
rs1240638874 802 dbSNP
rs543605594 808 dbSNP
rs529511756 811 dbSNP
rs1157662188 819 dbSNP
rs1412551363 821 dbSNP
rs1376992474 824 dbSNP
rs372373092 824 dbSNP
rs767146904 828 dbSNP
rs562183785 830 dbSNP
rs1365639570 832 dbSNP
rs78604771 838 dbSNP
rs1301214441 841 dbSNP
rs551784987 851 dbSNP
rs1364473334 853 dbSNP
rs986767557 855 dbSNP
rs910810175 856 dbSNP
rs963473055 858 dbSNP
rs1488244814 863 dbSNP
rs1333797782 870 dbSNP
rs973578836 876 dbSNP
rs919333372 886 dbSNP
rs971660017 887 dbSNP
rs541587578 888 dbSNP
rs1285636536 890 dbSNP
rs1034048245 896 dbSNP
rs10988835 900 dbSNP
rs1293654900 901 dbSNP
rs917215103 905 dbSNP
rs551437742 907 dbSNP
rs1224904493 921 dbSNP
rs1014687228 922 dbSNP
rs948761880 929 dbSNP
rs1162782117 930 dbSNP
rs566382481 933 dbSNP
rs1460055283 938 dbSNP
rs181166341 942 dbSNP
rs1166102421 945 dbSNP
rs1477663671 946 dbSNP
rs1240729468 948 dbSNP
rs1195888131 957 dbSNP
rs111436235 960 dbSNP
rs1000028693 964 dbSNP
rs931945334 967 dbSNP
rs986464035 968 dbSNP
rs374238723 976 dbSNP
rs1417758318 977 dbSNP
rs573552989 977 dbSNP
rs1052975825 993 dbSNP
rs891539959 994 dbSNP
rs998368751 1007 dbSNP
rs146769771 1008 dbSNP
rs1385553318 1010 dbSNP
rs1431351359 1011 dbSNP
rs889413545 1017 dbSNP
rs1445910317 1039 dbSNP
rs911199029 1039 dbSNP
rs1396796836 1040 dbSNP
rs1006558151 1047 dbSNP
rs1165849891 1056 dbSNP
rs1017807382 1061 dbSNP
rs963631307 1064 dbSNP
rs527242694 1072 dbSNP
rs796542856 1076 dbSNP
rs1170043557 1082 dbSNP
rs555907542 1083 dbSNP
rs973528048 1085 dbSNP
rs1191201100 1090 dbSNP
rs1469364525 1094 dbSNP
rs1253110314 1099 dbSNP
rs1026464002 1101 dbSNP
rs950930926 1106 dbSNP
rs993292900 1107 dbSNP
rs1215006956 1117 dbSNP
rs1462398350 1120 dbSNP
rs1299837704 1124 dbSNP
rs577744140 1136 dbSNP
rs1344215794 1138 dbSNP
rs917348194 1151 dbSNP
rs560262772 1152 dbSNP
rs1373220425 1154 dbSNP
rs1001766452 1163 dbSNP
rs1390643355 1171 dbSNP
rs754237957 1172 dbSNP
rs1308794655 1177 dbSNP
rs1353022745 1181 dbSNP
rs1383872225 1182 dbSNP
rs148876661 1185 dbSNP
rs1035033388 1190 dbSNP
rs113126324 1195 dbSNP
rs1321224320 1205 dbSNP
rs1006310215 1217 dbSNP
rs760660119 1218 dbSNP
rs1455992304 1220 dbSNP
rs1228769955 1223 dbSNP
rs1395131595 1228 dbSNP
rs1253640708 1232 dbSNP
rs1479861612 1237 dbSNP
rs1468273552 1238 dbSNP
rs1234322609 1253 dbSNP
rs935934703 1254 dbSNP
rs1244144949 1256 dbSNP
rs1277948503 1264 dbSNP
rs1212879612 1266 dbSNP
rs1052923546 1267 dbSNP
rs1348549228 1274 dbSNP
rs1462326355 1277 dbSNP
rs757641060 1280 dbSNP
rs933855461 1287 dbSNP
rs1030139668 1288 dbSNP
rs1223346666 1301 dbSNP
rs1371448763 1301 dbSNP
rs1281423543 1302 dbSNP
rs1443220768 1305 dbSNP
rs765586995 1308 dbSNP
rs750786660 1310 dbSNP
rs1051244632 1315 dbSNP
rs986023147 1325 dbSNP
rs143565798 1326 dbSNP
rs936008639 1329 dbSNP
rs1398387609 1337 dbSNP
rs1371330230 1339 dbSNP
rs1006958716 1344 dbSNP
rs780389756 1345 dbSNP
rs913299187 1346 dbSNP
rs1255093684 1347 dbSNP
rs747118892 1359 dbSNP
rs1485949004 1360 dbSNP
rs1285301216 1362 dbSNP
rs995026210 1368 dbSNP
rs184114131 1369 dbSNP
rs755061112 1380 dbSNP
rs1335033112 1381 dbSNP
rs1286469461 1383 dbSNP
rs1045808342 1384 dbSNP
rs907346011 1390 dbSNP
rs529575014 1397 dbSNP
rs1417086629 1402 dbSNP
rs1356514581 1406 dbSNP
rs950913374 1407 dbSNP
rs1429272942 1413 dbSNP
rs188856651 1414 dbSNP
rs1159241305 1416 dbSNP
rs1306210466 1427 dbSNP
rs1460570155 1427 dbSNP
rs1415283505 1429 dbSNP
rs1218570901 1431 dbSNP
rs1166818425 1433 dbSNP
rs1264100848 1433 dbSNP
rs1024808510 1435 dbSNP
rs1056019312 1436 dbSNP
rs562970568 1437 dbSNP
rs888062640 1442 dbSNP
rs980087844 1445 dbSNP
rs1014623907 1450 dbSNP
rs533557568 1470 dbSNP
rs925968687 1472 dbSNP
rs1271433281 1478 dbSNP
rs1235386575 1483 dbSNP
rs879236887 1494 dbSNP
rs116087401 1498 dbSNP
rs150953610 1507 dbSNP
rs913148211 1508 dbSNP
rs1288926566 1509 dbSNP
rs527293051 1510 dbSNP
rs1439606613 1512 dbSNP
rs140785832 1516 dbSNP
rs1327430957 1517 dbSNP
rs1032256519 1518 dbSNP
rs1372258908 1524 dbSNP
rs1168117809 1525 dbSNP
rs1431090036 1526 dbSNP
rs1050975486 1531 dbSNP
rs1192941026 1537 dbSNP
rs1174546655 1540 dbSNP
rs889519647 1545 dbSNP
rs1468047125 1546 dbSNP
rs1251244718 1551 dbSNP
rs1215748712 1561 dbSNP
rs1335999175 1577 dbSNP
rs990096021 1580 dbSNP
rs913207553 1586 dbSNP
rs942475826 1590 dbSNP
rs1358866230 1604 dbSNP
rs1309775297 1620 dbSNP
rs545338650 1625 dbSNP
rs1296835755 1629 dbSNP
rs1431772986 1631 dbSNP
rs145739109 1632 dbSNP
rs1441156248 1633 dbSNP
rs1395399999 1634 dbSNP
rs898137743 1635 dbSNP
rs993802418 1637 dbSNP
rs981452569 1642 dbSNP
rs1048406504 1654 dbSNP
rs537775726 1664 dbSNP
rs754659037 1678 dbSNP
rs1433966070 1680 dbSNP
rs1250156940 1694 dbSNP
rs1284538089 1701 dbSNP
rs1194298604 1702 dbSNP
rs1014830042 1711 dbSNP
rs1024507242 1715 dbSNP
rs1275825527 1717 dbSNP
rs970530359 1726 dbSNP
rs1210745227 1731 dbSNP
rs1277460349 1735 dbSNP
rs1317075270 1736 dbSNP
rs1001597792 1740 dbSNP
rs1056407416 1750 dbSNP
rs181611790 1754 dbSNP
rs1304344400 1756 dbSNP
rs1392798130 1757 dbSNP
rs571391602 1763 dbSNP
rs1312097666 1764 dbSNP
rs1036631950 1771 dbSNP
rs1377259917 1781 dbSNP
rs1200025602 1784 dbSNP
rs1466554867 1792 dbSNP
rs1271053187 1798 dbSNP
rs897453732 1799 dbSNP
rs1421139903 1807 dbSNP
rs138668640 1809 dbSNP
rs1187751449 1810 dbSNP
rs1484975229 1812 dbSNP
rs1283008068 1832 dbSNP
rs376277806 1843 dbSNP
rs1349278510 1844 dbSNP
rs888901559 1846 dbSNP
rs1240711858 1852 dbSNP
rs1329496467 1855 dbSNP
rs527654869 1858 dbSNP
rs1292429806 1873 dbSNP
rs745657695 1882 dbSNP
rs1357135803 1897 dbSNP
rs1334673667 1901 dbSNP
rs1381605465 1904 dbSNP
rs1384297369 1916 dbSNP
rs913131208 1922 dbSNP
rs531679920 1929 dbSNP
rs1401465313 1930 dbSNP
rs1161582504 1933 dbSNP
rs1413061998 1936 dbSNP
rs1164484182 1939 dbSNP
rs187057336 1940 dbSNP
rs1032617572 1947 dbSNP
rs1188802091 1948 dbSNP
rs987019234 1952 dbSNP
rs1259024816 1959 dbSNP
rs1206441216 1967 dbSNP
rs1009416508 1971 dbSNP
rs1272076169 1974 dbSNP
rs911033875 1981 dbSNP
rs942549525 1987 dbSNP
rs1038051286 1990 dbSNP
rs1336617634 1993 dbSNP
rs1284600487 1999 dbSNP
rs1226565329 2003 dbSNP
rs967318019 2009 dbSNP
rs1304276693 2011 dbSNP
rs1347995812 2012 dbSNP
rs981444262 2014 dbSNP
rs1403650042 2016 dbSNP
rs1389483828 2018 dbSNP
rs192338239 2029 dbSNP
rs1325412734 2030 dbSNP
rs1460097750 2032 dbSNP
rs1420429851 2043 dbSNP
rs928735646 2043 dbSNP
rs919685897 2045 dbSNP
rs1475364042 2052 dbSNP
rs1374544881 2057 dbSNP
rs1225060802 2061 dbSNP
rs1195965007 2064 dbSNP
rs959068010 2065 dbSNP
rs1251863090 2068 dbSNP
rs991661350 2070 dbSNP
rs771741151 2080 dbSNP
rs1290302384 2081 dbSNP
rs549934475 2083 dbSNP
rs1337207579 2084 dbSNP
rs942176981 2086 dbSNP
rs1229078458 2100 dbSNP
rs1036579866 2101 dbSNP
rs1302815092 2106 dbSNP
rs1046765529 2110 dbSNP
rs1351891092 2111 dbSNP
rs886670805 2113 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacgucggAACUGGAGGGUc 5'
                   ||| ||||||| 
Target 5' ---------UUGUCCUCCCAa 3'
1 - 12
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000407474.3 | 3UTR | UUGUCCUCCCAAAGUGCUGGGAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000407474.3 | 3UTR | UUGUCCUCCCAAAGUGCUGGGAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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