pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRUB2   
Synonyms CLONE24922
Description TruB pseudouridine synthase family member 2
Transcript NM_015679   
Expression
Putative miRNA Targets on TRUB2
3'UTR of TRUB2
(miRNA target sites are highlighted)
>TRUB2|NM_015679|3'UTR
   1 ATGCCCAGGCAGCTCCTGGGGCAGTGGATGGATAAATAGAAGAACTGCTATGAGCTGGACCTGATAGCTGTGCAGAAAGT
  81 GAGAGCAGGGGCACCTTTTCTACGTAAGACACAAAACTCAAGCTGTAACAGAAAGGTCAATGGACTTGACCCAACTGAGA
 161 AGGAAAAACTTCTGTATGGAGGAAAAGACAGTAAACATGACAGACTGATAGAAAGTATTGGCAGACCAGGCGTGGTGGCG
 241 GGCACTTGTAATCCCAGCTACTCCCAAGGCTGAGGCAGGAGAATTGCTTGAGCCCAGGAGTTTAAGGTTGTAGTGCGCTA
 321 GACGGCGCCTGTGAATAGCCACTGCACTCTAGTCTGGGGAACATATGAGACCCCTGCCATCTCAAAAAAAAAAAAATTCT
 401 CAATAAACTATGTGCCCACGAAAATTAAAAATTAAAAAAAATTGTAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacgucggaacugGAGGGUc 5'
                        |||||| 
Target 5' tgtaatcccagctaCTCCCAa 3'
247 - 267 120.00 -13.10
2
miRNA  3' ugaCGUCGGA-ACU----GGAGGGUc 5'
             | | | | |||    ||| ||| 
Target 5' tggGGAACATATGAGACCCCTGCCAt 3'
355 - 380 112.00 -7.90
3
miRNA  3' ugacgUCGG--AACUGGA--GGGUc 5'
               :|:|  | |||:|  |||| 
Target 5' agaaaGGTCAATGGACTTGACCCAa 3'
130 - 154 98.00 -9.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24577478 6 COSMIC
COSN30455489 19 COSMIC
COSN30504098 21 COSMIC
COSN30154807 31 COSMIC
COSN32065208 36 COSMIC
COSN30146436 39 COSMIC
COSN31499447 103 COSMIC
COSN16110465 140 COSMIC
COSN28213745 530 COSMIC
COSN23103771 1045 COSMIC
COSN21298863 1371 COSMIC
COSN22754294 1413 COSMIC
COSN25580942 1455 COSMIC
COSN30443137 1687 COSMIC
COSN9700767 1840 COSMIC
COSN25847326 2001 COSMIC
COSN8295737 2149 COSMIC
COSN25732707 2210 COSMIC
COSN32214935 2481 COSMIC
COSN25174928 2553 COSMIC
COSN23985053 3089 COSMIC
COSN23810448 3106 COSMIC
COSN19383093 3348 COSMIC
COSN16757985 3637 COSMIC
COSN21065875 3787 COSMIC
COSN27183970 3845 COSMIC
COSN21959967 4257 COSMIC
COSN21960720 4259 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs771617734 5 dbSNP
rs1234674701 7 dbSNP
rs1374854596 10 dbSNP
rs749721509 13 dbSNP
rs1331041786 15 dbSNP
rs1456029323 16 dbSNP
rs776091421 21 dbSNP
rs770256046 23 dbSNP
rs1363495753 24 dbSNP
rs754945075 27 dbSNP
rs1452986710 28 dbSNP
rs1200674577 33 dbSNP
rs1394864765 39 dbSNP
rs148428332 41 dbSNP
rs748685973 45 dbSNP
rs781730336 47 dbSNP
rs202224141 48 dbSNP
rs757537499 50 dbSNP
rs1012165529 54 dbSNP
rs1197008361 55 dbSNP
rs2231643 66 dbSNP
rs1436533971 71 dbSNP
rs1299061420 86 dbSNP
rs1253958825 91 dbSNP
rs1455858519 94 dbSNP
rs1053799264 99 dbSNP
rs1192223896 100 dbSNP
rs527452677 103 dbSNP
rs78278964 104 dbSNP
rs2231644 106 dbSNP
rs2231645 107 dbSNP
rs201871299 108 dbSNP
rs386738712 108 dbSNP
rs1002666475 112 dbSNP
rs905674589 124 dbSNP
rs1365430760 129 dbSNP
rs186463651 137 dbSNP
rs1267845496 138 dbSNP
rs1338195611 140 dbSNP
rs777983432 142 dbSNP
rs746346897 145 dbSNP
rs1195662888 150 dbSNP
rs548795956 154 dbSNP
rs772214183 166 dbSNP
rs372307838 169 dbSNP
rs1478530476 176 dbSNP
rs963547750 181 dbSNP
rs1263408131 190 dbSNP
rs375995122 191 dbSNP
rs1429298307 196 dbSNP
rs368583861 197 dbSNP
rs983758695 203 dbSNP
rs954671221 206 dbSNP
rs1030331371 231 dbSNP
rs546584893 232 dbSNP
rs1487177728 239 dbSNP
rs532990790 240 dbSNP
rs564746485 241 dbSNP
rs1210327396 249 dbSNP
rs1383498149 277 dbSNP
rs1355610007 278 dbSNP
rs1325556985 287 dbSNP
rs3180362 296 dbSNP
rs1021720741 297 dbSNP
rs1011721384 299 dbSNP
rs1320098207 303 dbSNP
rs1040839278 310 dbSNP
rs1272894024 312 dbSNP
rs1486407824 314 dbSNP
rs1207055306 315 dbSNP
rs748208579 316 dbSNP
rs144516462 317 dbSNP
rs1188705870 319 dbSNP
rs1325998447 320 dbSNP
rs1003518830 321 dbSNP
rs778906795 323 dbSNP
rs984941583 324 dbSNP
rs1046040416 326 dbSNP
rs947733594 327 dbSNP
rs531000119 328 dbSNP
rs1037867060 342 dbSNP
rs941816178 351 dbSNP
rs907681293 354 dbSNP
rs1353047797 362 dbSNP
rs1476658503 363 dbSNP
rs1379131196 372 dbSNP
rs1199240456 378 dbSNP
rs1450848870 380 dbSNP
rs533165623 382 dbSNP
rs1200466073 383 dbSNP
rs1459136454 384 dbSNP
rs1259374031 389 dbSNP
rs111806731 397 dbSNP
rs774439267 397 dbSNP
rs961026848 397 dbSNP
rs1484733985 399 dbSNP
rs1187395899 407 dbSNP
rs1251136169 412 dbSNP
rs1420855935 416 dbSNP
rs1035385778 417 dbSNP
rs983341879 419 dbSNP
rs562266798 420 dbSNP
rs1198219181 421 dbSNP
rs564195967 434 dbSNP
rs1298315789 442 dbSNP
rs1373032006 442 dbSNP
rs1433559163 442 dbSNP
rs754879569 449 dbSNP
rs969847897 455 dbSNP
rs180683129 462 dbSNP
rs541151022 467 dbSNP
rs1235209059 469 dbSNP
rs149273968 472 dbSNP
rs1021689920 475 dbSNP
rs1346059801 483 dbSNP
rs13286637 494 dbSNP
rs746705010 497 dbSNP
rs1252005439 505 dbSNP
rs1481552969 508 dbSNP
rs1330891635 510 dbSNP
rs956172624 511 dbSNP
rs373502105 515 dbSNP
rs1454553652 520 dbSNP
rs138247064 521 dbSNP
rs370817598 523 dbSNP
rs1003079768 524 dbSNP
rs10987960 527 dbSNP
rs755849252 532 dbSNP
rs147516317 535 dbSNP
rs1181682595 536 dbSNP
rs1400296265 546 dbSNP
rs1330153887 550 dbSNP
rs868682055 551 dbSNP
rs1218897107 555 dbSNP
rs901826536 560 dbSNP
rs538181972 570 dbSNP
rs1202277733 576 dbSNP
rs1008031858 577 dbSNP
rs1477539577 580 dbSNP
rs1037394821 583 dbSNP
rs1375779951 585 dbSNP
rs1215313933 586 dbSNP
rs1180431104 593 dbSNP
rs1487924359 599 dbSNP
rs889208632 600 dbSNP
rs1049185601 612 dbSNP
rs750194054 619 dbSNP
rs1440286643 622 dbSNP
rs930805195 623 dbSNP
rs919466323 628 dbSNP
rs1036556000 630 dbSNP
rs575458729 638 dbSNP
rs1328296320 639 dbSNP
rs941769766 652 dbSNP
rs1435956677 662 dbSNP
rs1289673611 664 dbSNP
rs1364434274 674 dbSNP
rs555491401 677 dbSNP
rs1238847333 681 dbSNP
rs886221725 682 dbSNP
rs189538586 683 dbSNP
rs1280922272 684 dbSNP
rs7874504 685 dbSNP
rs1243475037 688 dbSNP
rs1484716188 689 dbSNP
rs1344744493 690 dbSNP
rs1278687244 691 dbSNP
rs1192263856 698 dbSNP
rs1242923108 700 dbSNP
rs1257640414 704 dbSNP
rs546745754 707 dbSNP
rs539436905 708 dbSNP
rs1416061656 711 dbSNP
rs1405138418 712 dbSNP
rs943296859 719 dbSNP
rs1439307666 722 dbSNP
rs1347164313 724 dbSNP
rs1428940057 732 dbSNP
rs1297618438 740 dbSNP
rs1356188597 747 dbSNP
rs1238588399 748 dbSNP
rs1341754522 751 dbSNP
rs78361416 752 dbSNP
rs914559170 754 dbSNP
rs1291356418 760 dbSNP
rs915674098 762 dbSNP
rs990206856 766 dbSNP
rs1286132323 767 dbSNP
rs1413626143 768 dbSNP
rs956311634 770 dbSNP
rs146328191 771 dbSNP
rs1185251485 778 dbSNP
rs556822071 780 dbSNP
rs1420104198 787 dbSNP
rs1472788547 795 dbSNP
rs971558598 800 dbSNP
rs184605501 801 dbSNP
rs1158275461 810 dbSNP
rs1376363227 813 dbSNP
rs1013102714 817 dbSNP
rs1311190741 818 dbSNP
rs898788492 819 dbSNP
rs539014545 826 dbSNP
rs562263901 830 dbSNP
rs1239351451 833 dbSNP
rs886148884 834 dbSNP
rs1370926125 837 dbSNP
rs1238891296 845 dbSNP
rs1188465808 846 dbSNP
rs548731636 849 dbSNP
rs933110383 852 dbSNP
rs1349676107 853 dbSNP
rs1208074003 858 dbSNP
rs763576654 859 dbSNP
rs760102924 860 dbSNP
rs1438213393 863 dbSNP
rs1219195922 867 dbSNP
rs1354871713 868 dbSNP
rs777218034 869 dbSNP
rs914529151 870 dbSNP
rs897985824 871 dbSNP
rs990525225 877 dbSNP
rs192871943 879 dbSNP
rs545940746 880 dbSNP
rs924667730 887 dbSNP
rs1303943327 888 dbSNP
rs35431309 891 dbSNP
rs1372685414 895 dbSNP
rs576818921 898 dbSNP
rs1231667590 901 dbSNP
rs563659689 904 dbSNP
rs1273684407 905 dbSNP
rs1339479954 907 dbSNP
rs543456226 907 dbSNP
rs1275702592 925 dbSNP
rs981506427 929 dbSNP
rs772314739 930 dbSNP
rs1023085695 937 dbSNP
rs576934568 939 dbSNP
rs189785226 941 dbSNP
rs1359681144 944 dbSNP
rs989883898 947 dbSNP
rs1156760997 953 dbSNP
rs962897403 955 dbSNP
rs1416021614 956 dbSNP
rs1163859371 959 dbSNP
rs748360966 964 dbSNP
rs1472525171 966 dbSNP
rs1421366643 967 dbSNP
rs7032645 970 dbSNP
rs140963223 974 dbSNP
rs774486603 975 dbSNP
rs977283176 977 dbSNP
rs1384663232 978 dbSNP
rs1322464064 983 dbSNP
rs966321372 983 dbSNP
rs1006277321 988 dbSNP
rs1267937639 989 dbSNP
rs78387192 998 dbSNP
rs1316549502 1005 dbSNP
rs1018855074 1008 dbSNP
rs1218586803 1014 dbSNP
rs1274135616 1017 dbSNP
rs950425041 1018 dbSNP
rs542021957 1019 dbSNP
rs1007928639 1024 dbSNP
rs1266926591 1024 dbSNP
rs1026427738 1027 dbSNP
rs184300698 1028 dbSNP
rs997248990 1029 dbSNP
rs901634313 1031 dbSNP
rs1165583825 1032 dbSNP
rs1038878525 1035 dbSNP
rs1263000279 1039 dbSNP
rs994854089 1040 dbSNP
rs1456183729 1042 dbSNP
rs1007407533 1044 dbSNP
rs1385185365 1046 dbSNP
rs553093358 1055 dbSNP
rs1015009162 1057 dbSNP
rs1453887110 1058 dbSNP
rs1003724216 1059 dbSNP
rs1291250148 1061 dbSNP
rs539497317 1062 dbSNP
rs906730699 1067 dbSNP
rs1265270690 1071 dbSNP
rs768781373 1072 dbSNP
rs1207146055 1073 dbSNP
rs570453483 1079 dbSNP
rs371178438 1080 dbSNP
rs779904023 1084 dbSNP
rs934629817 1085 dbSNP
rs28524722 1086 dbSNP
rs533907633 1093 dbSNP
rs935695997 1096 dbSNP
rs568239047 1097 dbSNP
rs1350354211 1099 dbSNP
rs950126811 1100 dbSNP
rs1404943180 1101 dbSNP
rs1460931841 1121 dbSNP
rs1394837010 1123 dbSNP
rs916002403 1124 dbSNP
rs1336742435 1130 dbSNP
rs1242505569 1131 dbSNP
rs991577673 1135 dbSNP
rs1353317129 1138 dbSNP
rs962928415 1144 dbSNP
rs910095652 1145 dbSNP
rs1173085666 1147 dbSNP
rs1257864487 1148 dbSNP
rs1482206011 1151 dbSNP
rs944553549 1154 dbSNP
rs983039920 1155 dbSNP
rs1420641446 1156 dbSNP
rs536666360 1163 dbSNP
rs1454480022 1173 dbSNP
rs986052600 1173 dbSNP
rs1174917555 1181 dbSNP
rs35313285 1182 dbSNP
rs1464922989 1189 dbSNP
rs1027589434 1190 dbSNP
rs973380671 1197 dbSNP
rs780901241 1201 dbSNP
rs1376378955 1216 dbSNP
rs1235341894 1217 dbSNP
rs997218432 1218 dbSNP
rs1310532870 1222 dbSNP
rs1251813032 1229 dbSNP
rs759644684 1229 dbSNP
rs965752507 1231 dbSNP
rs1459067807 1233 dbSNP
rs548501615 1234 dbSNP
rs1017370398 1235 dbSNP
rs1195113340 1237 dbSNP
rs1466741682 1239 dbSNP
rs755965363 1242 dbSNP
rs1007378199 1244 dbSNP
rs1374122638 1253 dbSNP
rs1467668255 1256 dbSNP
rs1168935484 1267 dbSNP
rs906686095 1268 dbSNP
rs892984227 1276 dbSNP
rs1295492616 1278 dbSNP
rs143683627 1279 dbSNP
rs1198856579 1289 dbSNP
rs1316863222 1291 dbSNP
rs1293032581 1292 dbSNP
rs1220668260 1294 dbSNP
rs751225414 1295 dbSNP
rs1216753722 1298 dbSNP
rs1012475458 1303 dbSNP
rs1438706171 1305 dbSNP
rs894064536 1305 dbSNP
rs1054089006 1306 dbSNP
rs1487984431 1307 dbSNP
rs1333506637 1318 dbSNP
rs1264746812 1319 dbSNP
rs547246841 1319 dbSNP
rs1169182195 1320 dbSNP
rs935645098 1321 dbSNP
rs565975165 1325 dbSNP
rs1167401640 1326 dbSNP
rs1348336809 1333 dbSNP
rs1354120561 1334 dbSNP
rs1289481455 1336 dbSNP
rs1277468815 1338 dbSNP
rs1342455165 1338 dbSNP
rs374926723 1339 dbSNP
rs1416467504 1340 dbSNP
rs1426389071 1341 dbSNP
rs1320703030 1342 dbSNP
rs192134797 1348 dbSNP
rs1287470458 1349 dbSNP
rs1453168624 1355 dbSNP
rs1240593086 1359 dbSNP
rs1487015677 1365 dbSNP
rs911700810 1374 dbSNP
rs1263061066 1375 dbSNP
rs1456930986 1378 dbSNP
rs986388583 1385 dbSNP
rs1249200049 1388 dbSNP
rs1211872121 1391 dbSNP
rs1312551526 1403 dbSNP
rs1277700064 1405 dbSNP
rs931862686 1406 dbSNP
rs1378961118 1408 dbSNP
rs920521339 1410 dbSNP
rs1054726490 1413 dbSNP
rs1297699130 1419 dbSNP
rs1375941925 1445 dbSNP
rs532592095 1446 dbSNP
rs1309925337 1454 dbSNP
rs1282148613 1459 dbSNP
rs148960200 1471 dbSNP
rs1224189504 1472 dbSNP
rs1310995940 1475 dbSNP
rs1351106843 1487 dbSNP
rs369042356 1490 dbSNP
rs1296659150 1493 dbSNP
rs1467836442 1494 dbSNP
rs961997623 1496 dbSNP
rs1236028421 1505 dbSNP
rs1472665749 1506 dbSNP
rs530067942 1516 dbSNP
rs1382369255 1519 dbSNP
rs915971583 1539 dbSNP
rs796467178 1544 dbSNP
rs562011511 1545 dbSNP
rs1416045173 1549 dbSNP
rs564591944 1566 dbSNP
rs766943250 1567 dbSNP
rs376875369 1568 dbSNP
rs1358574644 1574 dbSNP
rs542185074 1577 dbSNP
rs1333178685 1582 dbSNP
rs761311420 1583 dbSNP
rs1012435074 1585 dbSNP
rs1183205414 1587 dbSNP
rs1483400396 1588 dbSNP
rs1236560124 1600 dbSNP
rs958222360 1601 dbSNP
rs910032728 1602 dbSNP
rs372288846 1603 dbSNP
rs1355591257 1609 dbSNP
rs1286578477 1610 dbSNP
rs1456562640 1612 dbSNP
rs1239414445 1614 dbSNP
rs1316413810 1615 dbSNP
rs1305014206 1616 dbSNP
rs999818267 1622 dbSNP
rs1170935512 1623 dbSNP
rs1380105927 1627 dbSNP
rs1424348792 1629 dbSNP
rs573181603 1631 dbSNP
rs187555205 1632 dbSNP
rs1397853523 1634 dbSNP
rs1041783902 1636 dbSNP
rs1323791325 1640 dbSNP
rs1008606925 1650 dbSNP
rs890219873 1656 dbSNP
rs1362909149 1657 dbSNP
rs922858046 1664 dbSNP
rs546040103 1665 dbSNP
rs1344859817 1669 dbSNP
rs773593408 1669 dbSNP
rs975707623 1670 dbSNP
rs1219793644 1681 dbSNP
rs1050239412 1684 dbSNP
rs1316435278 1693 dbSNP
rs1453723883 1695 dbSNP
rs931802060 1697 dbSNP
rs1290823480 1703 dbSNP
rs1453590037 1714 dbSNP
rs920449773 1719 dbSNP
rs1246231788 1734 dbSNP
rs1037576312 1735 dbSNP
rs965722957 1741 dbSNP
rs1361535880 1742 dbSNP
rs1166229505 1743 dbSNP
rs1423923500 1747 dbSNP
rs1421462175 1748 dbSNP
rs1017339684 1752 dbSNP
rs1163664036 1754 dbSNP
rs1392401048 1760 dbSNP
rs907832472 1768 dbSNP
rs1322235714 1770 dbSNP
rs767837930 1774 dbSNP
rs576836031 1775 dbSNP
rs1185365238 1781 dbSNP
rs1339149127 1788 dbSNP
rs1266428302 1799 dbSNP
rs916639886 1799 dbSNP
rs34780092 1807 dbSNP
rs397959492 1807 dbSNP
rs60555820 1807 dbSNP
rs754113717 1807 dbSNP
rs770066285 1807 dbSNP
rs867594410 1807 dbSNP
rs113305755 1808 dbSNP
rs1488649381 1808 dbSNP
rs556816598 1814 dbSNP
rs999101568 1823 dbSNP
rs1263723658 1826 dbSNP
rs1204452094 1829 dbSNP
rs903059084 1831 dbSNP
rs184788955 1832 dbSNP
rs1032545868 1833 dbSNP
rs192197399 1836 dbSNP
rs1292888841 1837 dbSNP
rs115931654 1839 dbSNP
rs534947348 1840 dbSNP
rs1359136380 1850 dbSNP
rs1055745642 1852 dbSNP
rs187795868 1861 dbSNP
rs552325107 1862 dbSNP
rs552450514 1863 dbSNP
rs1047194983 1875 dbSNP
rs12003810 1879 dbSNP
rs922827294 1885 dbSNP
rs1242374758 1889 dbSNP
rs977017060 1896 dbSNP
rs942964489 1903 dbSNP
rs898972289 1904 dbSNP
rs910203732 1913 dbSNP
rs1478623918 1914 dbSNP
rs550052579 1919 dbSNP
rs907798713 1929 dbSNP
rs1424048561 1930 dbSNP
rs760935205 1930 dbSNP
rs772950401 1933 dbSNP
rs949396708 1938 dbSNP
rs1453601577 1941 dbSNP
rs916626228 1942 dbSNP
rs957107855 1943 dbSNP
rs200147597 1944 dbSNP
rs749330491 1945 dbSNP
rs1377861112 1948 dbSNP
rs977256867 1955 dbSNP
rs1242620939 1956 dbSNP
rs561224088 1957 dbSNP
rs1024120488 1958 dbSNP
rs1316403847 1961 dbSNP
rs1014107392 1962 dbSNP
rs1257661246 1963 dbSNP
rs182674502 1964 dbSNP
rs1199615782 1967 dbSNP
rs1238595692 1970 dbSNP
rs1458769043 1974 dbSNP
rs1034347533 1976 dbSNP
rs1237250559 1984 dbSNP
rs191398653 1988 dbSNP
rs1468961298 1990 dbSNP
rs1272669677 1991 dbSNP
rs1212031500 1993 dbSNP
rs888499847 2000 dbSNP
rs1047609410 2001 dbSNP
rs1020271168 2002 dbSNP
rs987093162 2009 dbSNP
rs1279116731 2012 dbSNP
rs1227068442 2032 dbSNP
rs117172293 2044 dbSNP
rs1372927181 2045 dbSNP
rs1028647405 2048 dbSNP
rs1304033888 2049 dbSNP
rs745857474 2051 dbSNP
rs1222831274 2053 dbSNP
rs995845279 2054 dbSNP
rs1196596693 2059 dbSNP
rs1369577305 2061 dbSNP
rs1250380547 2062 dbSNP
rs1323369952 2065 dbSNP
rs1466755084 2066 dbSNP
rs1400485075 2072 dbSNP
rs1041260146 2076 dbSNP
rs898940616 2084 dbSNP
rs1016024003 2087 dbSNP
rs1425060518 2088 dbSNP
rs781026027 2089 dbSNP
rs1460261455 2091 dbSNP
rs545965209 2096 dbSNP
rs576995399 2097 dbSNP
rs1354111813 2098 dbSNP
rs563396118 2098 dbSNP
rs1199449369 2109 dbSNP
rs1295299042 2111 dbSNP
rs1365602441 2112 dbSNP
rs137948800 2112 dbSNP
rs1342335039 2114 dbSNP
rs551266203 2115 dbSNP
rs1050053537 2118 dbSNP
rs1321902087 2119 dbSNP
rs1223318293 2123 dbSNP
rs1046742620 2124 dbSNP
rs1263102600 2127 dbSNP
rs530768345 2134 dbSNP
rs935681778 2135 dbSNP
rs895105065 2136 dbSNP
rs868451108 2138 dbSNP
rs1479103618 2146 dbSNP
rs1185102593 2147 dbSNP
rs925696929 2149 dbSNP
rs527811712 2152 dbSNP
rs1348422102 2157 dbSNP
rs967124587 2160 dbSNP
rs1298933270 2161 dbSNP
rs1362327307 2164 dbSNP
rs1195503805 2171 dbSNP
rs554098306 2173 dbSNP
rs917078091 2174 dbSNP
rs534338920 2175 dbSNP
rs1370847000 2177 dbSNP
rs1301927675 2178 dbSNP
rs777526845 2183 dbSNP
rs1448272983 2184 dbSNP
rs1377064852 2191 dbSNP
rs958582638 2193 dbSNP
rs1240186318 2194 dbSNP
rs1389358984 2196 dbSNP
rs1404056779 2201 dbSNP
rs1489519586 2204 dbSNP
rs1214294256 2205 dbSNP
rs1242105241 2207 dbSNP
rs572369748 2208 dbSNP
rs1172894389 2210 dbSNP
rs945516183 2211 dbSNP
rs912767143 2212 dbSNP
rs954324420 2217 dbSNP
rs987449411 2217 dbSNP
rs1034684835 2223 dbSNP
rs1441607836 2225 dbSNP
rs1233591739 2231 dbSNP
rs1181328348 2232 dbSNP
rs1382247331 2234 dbSNP
rs1005529293 2237 dbSNP
rs1258561503 2238 dbSNP
rs1317536319 2241 dbSNP
rs558850100 2243 dbSNP
rs974394830 2245 dbSNP
rs1381541574 2247 dbSNP
rs963045222 2254 dbSNP
rs1447067982 2259 dbSNP
rs1310739267 2260 dbSNP
rs1015950194 2266 dbSNP
rs952837659 2268 dbSNP
rs1222776216 2269 dbSNP
rs758146627 2273 dbSNP
rs1284143293 2274 dbSNP
rs1243031610 2284 dbSNP
rs1004676109 2287 dbSNP
rs187313070 2287 dbSNP
rs1350721639 2290 dbSNP
rs1024817645 2294 dbSNP
rs1179506980 2294 dbSNP
rs80160353 2299 dbSNP
rs1341849548 2308 dbSNP
rs867531510 2332 dbSNP
rs768185957 2338 dbSNP
rs895081848 2338 dbSNP
rs901299153 2340 dbSNP
rs1299958526 2346 dbSNP
rs950681162 2352 dbSNP
rs1041197598 2357 dbSNP
rs1007064026 2361 dbSNP
rs890016494 2362 dbSNP
rs1054456992 2366 dbSNP
rs936966805 2371 dbSNP
rs550357827 2374 dbSNP
rs1440804658 2382 dbSNP
rs1026390605 2387 dbSNP
rs760087418 2395 dbSNP
rs1042860949 2399 dbSNP
rs1041422169 2402 dbSNP
rs143413012 2420 dbSNP
rs562307481 2421 dbSNP
rs945513881 2424 dbSNP
rs1188987780 2432 dbSNP
rs917006083 2433 dbSNP
rs1199735475 2441 dbSNP
rs992581731 2443 dbSNP
rs1260214781 2448 dbSNP
rs912685932 2456 dbSNP
rs958551607 2457 dbSNP
rs372298204 2464 dbSNP
rs1478935666 2465 dbSNP
rs987008065 2467 dbSNP
rs1428596311 2471 dbSNP
rs141091410 2473 dbSNP
rs952686127 2476 dbSNP
rs111806340 2477 dbSNP
rs1284217827 2488 dbSNP
rs974321213 2490 dbSNP
rs1409041370 2511 dbSNP
rs1323568041 2512 dbSNP
rs994206877 2513 dbSNP
rs963013239 2519 dbSNP
rs1357865926 2522 dbSNP
rs965412995 2523 dbSNP
rs1219581177 2525 dbSNP
rs1280528107 2527 dbSNP
rs527719205 2528 dbSNP
rs983572774 2529 dbSNP
rs1290932641 2532 dbSNP
rs1007032843 2535 dbSNP
rs1353298884 2536 dbSNP
rs1025204888 2539 dbSNP
rs559666221 2554 dbSNP
rs552238650 2555 dbSNP
rs534011670 2556 dbSNP
rs1474841501 2558 dbSNP
rs1316141545 2564 dbSNP
rs1415593354 2569 dbSNP
rs1422178989 2570 dbSNP
rs563300032 2575 dbSNP
rs543608247 2583 dbSNP
rs1401152527 2588 dbSNP
rs1320628961 2590 dbSNP
rs1325036259 2594 dbSNP
rs1227243984 2605 dbSNP
rs1284971844 2606 dbSNP
rs1358802594 2611 dbSNP
rs1393050160 2613 dbSNP
rs902798768 2615 dbSNP
rs966260380 2621 dbSNP
rs1488537356 2629 dbSNP
rs959221056 2642 dbSNP
rs574166410 2649 dbSNP
rs1188042678 2650 dbSNP
rs945718134 2658 dbSNP
rs1415982009 2660 dbSNP
rs1442431381 2661 dbSNP
rs115888834 2665 dbSNP
rs1056822616 2666 dbSNP
rs1042398125 2668 dbSNP
rs1475948464 2673 dbSNP
rs1241985513 2679 dbSNP
rs149875819 2688 dbSNP
rs1383489576 2701 dbSNP
rs1381988988 2704 dbSNP
rs1335302988 2705 dbSNP
rs576579389 2709 dbSNP
rs1450727169 2710 dbSNP
rs750951446 2711 dbSNP
rs1354488293 2712 dbSNP
rs182885390 2714 dbSNP
rs984013125 2725 dbSNP
rs1258857593 2726 dbSNP
rs10987959 2744 dbSNP
rs1051646780 2751 dbSNP
rs1018175372 2753 dbSNP
rs931218117 2755 dbSNP
rs1200782342 2757 dbSNP
rs1214351590 2758 dbSNP
rs1459659186 2760 dbSNP
rs1452830434 2763 dbSNP
rs1182587710 2767 dbSNP
rs10987958 2770 dbSNP
rs571755578 2775 dbSNP
rs771355228 2776 dbSNP
rs972702706 2782 dbSNP
rs1332159527 2783 dbSNP
rs932805791 2786 dbSNP
rs1259628234 2796 dbSNP
rs1214877543 2798 dbSNP
rs1361032843 2803 dbSNP
rs1173452679 2804 dbSNP
rs1408774969 2815 dbSNP
rs1468622819 2815 dbSNP
rs879861880 2815 dbSNP
rs1393188789 2816 dbSNP
rs1304984545 2817 dbSNP
rs1268337397 2823 dbSNP
rs1335030569 2823 dbSNP
rs563010140 2824 dbSNP
rs1373256904 2825 dbSNP
rs1326602418 2828 dbSNP
rs558812919 2834 dbSNP
rs1458832929 2835 dbSNP
rs921473264 2846 dbSNP
rs113045760 2851 dbSNP
rs941624695 2862 dbSNP
rs1410867309 2865 dbSNP
rs1419334087 2867 dbSNP
rs908832368 2871 dbSNP
rs983155934 2872 dbSNP
rs1176222061 2878 dbSNP
rs1254205397 2884 dbSNP
rs950489930 2885 dbSNP
rs1463727191 2889 dbSNP
rs768082640 2898 dbSNP
rs1395848323 2900 dbSNP
rs992340150 2905 dbSNP
rs959188480 2906 dbSNP
rs1239560701 2910 dbSNP
rs1424155145 2911 dbSNP
rs1222626069 2913 dbSNP
rs965382057 2918 dbSNP
rs1308824619 2919 dbSNP
rs748730535 2922 dbSNP
rs10987957 2927 dbSNP
rs1250466541 2929 dbSNP
rs1488517406 2931 dbSNP
rs1270679656 2939 dbSNP
rs1224123758 2944 dbSNP
rs576674763 2949 dbSNP
rs556451251 2950 dbSNP
rs1199097274 2952 dbSNP
rs1000747808 2953 dbSNP
rs967958197 2954 dbSNP
rs1021347195 2963 dbSNP
rs186341060 2964 dbSNP
rs567744470 2969 dbSNP
rs1305059545 2978 dbSNP
rs891145250 2983 dbSNP
rs1051187479 2985 dbSNP
rs762018062 2986 dbSNP
rs1212653823 2994 dbSNP
rs769393115 3009 dbSNP
rs546533847 3014 dbSNP
rs1443257071 3015 dbSNP
rs561792417 3016 dbSNP
rs899978600 3018 dbSNP
rs1288993442 3019 dbSNP
rs547941756 3021 dbSNP
rs1222382446 3027 dbSNP
rs1243267391 3031 dbSNP
rs1038504807 3033 dbSNP
rs1185196954 3039 dbSNP
rs541910539 3040 dbSNP
rs1261244985 3041 dbSNP
rs773509982 3046 dbSNP
rs138995503 3047 dbSNP
rs1383474374 3056 dbSNP
rs150719980 3061 dbSNP
rs11792113 3063 dbSNP
rs1159172578 3073 dbSNP
rs1452023072 3076 dbSNP
rs1428358355 3082 dbSNP
rs1288095764 3083 dbSNP
rs1379391902 3084 dbSNP
rs1239503856 3087 dbSNP
rs1177400693 3088 dbSNP
rs1007696624 3089 dbSNP
rs75534058 3091 dbSNP
rs1230850970 3093 dbSNP
rs532261042 3104 dbSNP
rs1214045730 3106 dbSNP
rs1285550135 3106 dbSNP
rs1319280896 3106 dbSNP
rs200734659 3106 dbSNP
rs545464622 3106 dbSNP
rs778531699 3106 dbSNP
rs745500563 3107 dbSNP
rs1398913285 3108 dbSNP
rs1410009163 3108 dbSNP
rs908806585 3108 dbSNP
rs1047791411 3110 dbSNP
rs201946902 3110 dbSNP
rs1334251946 3112 dbSNP
rs1381652180 3115 dbSNP
rs1279506340 3122 dbSNP
rs774733166 3129 dbSNP
rs1280818105 3134 dbSNP
rs1032916353 3145 dbSNP
rs1232080771 3146 dbSNP
rs1001048484 3147 dbSNP
rs1222579624 3151 dbSNP
rs1309308197 3153 dbSNP
rs7865290 3154 dbSNP
rs1461055870 3164 dbSNP
rs1205259705 3171 dbSNP
rs1021181368 3172 dbSNP
rs1176547923 3176 dbSNP
rs1372825661 3177 dbSNP
rs1429957765 3178 dbSNP
rs1481282831 3196 dbSNP
rs1174022263 3211 dbSNP
rs1296675734 3219 dbSNP
rs991899358 3220 dbSNP
rs549676002 3221 dbSNP
rs529872950 3228 dbSNP
rs1376509027 3229 dbSNP
rs553830096 3229 dbSNP
rs764392269 3232 dbSNP
rs1346746120 3242 dbSNP
rs560646561 3245 dbSNP
rs1281807359 3253 dbSNP
rs533868871 3255 dbSNP
rs1323017967 3259 dbSNP
rs1366078388 3265 dbSNP
rs1056750521 3272 dbSNP
rs937749527 3276 dbSNP
rs540766944 3282 dbSNP
rs937085740 3286 dbSNP
rs1203976836 3290 dbSNP
rs1269452166 3296 dbSNP
rs905649038 3299 dbSNP
rs1196940172 3308 dbSNP
rs1428358039 3313 dbSNP
rs979275539 3318 dbSNP
rs1169278044 3321 dbSNP
rs1416997065 3324 dbSNP
rs778332441 3328 dbSNP
rs1048672179 3333 dbSNP
rs142100225 3337 dbSNP
rs1366690753 3341 dbSNP
rs931178085 3345 dbSNP
rs955394675 3350 dbSNP
rs988504140 3350 dbSNP
rs918475933 3359 dbSNP
rs1431984404 3370 dbSNP
rs1272124047 3373 dbSNP
rs1337722462 3375 dbSNP
rs1214021180 3387 dbSNP
rs972630705 3392 dbSNP
rs1220143946 3407 dbSNP
rs996848623 3411 dbSNP
rs527393243 3420 dbSNP
rs573033852 3425 dbSNP
rs1475410181 3428 dbSNP
rs899946200 3432 dbSNP
rs1195119986 3439 dbSNP
rs1239950844 3441 dbSNP
rs1474893719 3444 dbSNP
rs1163594543 3445 dbSNP
rs912563440 3462 dbSNP
rs559892535 3463 dbSNP
rs1005662676 3464 dbSNP
rs1390709909 3465 dbSNP
rs1383080686 3467 dbSNP
rs114030729 3470 dbSNP
rs1489203142 3474 dbSNP
rs768176759 3479 dbSNP
rs1047307087 3482 dbSNP
rs1032430224 3483 dbSNP
rs950382695 3486 dbSNP
rs148642677 3487 dbSNP
rs1290914412 3489 dbSNP
rs182446163 3497 dbSNP
rs759673346 3501 dbSNP
rs1235446840 3505 dbSNP
rs926349565 3506 dbSNP
rs1356473636 3518 dbSNP
rs1293007802 3522 dbSNP
rs1013774168 3526 dbSNP
rs749300548 3530 dbSNP
rs1442217067 3532 dbSNP
rs1289980990 3533 dbSNP
rs1368360129 3536 dbSNP
rs1454768509 3544 dbSNP
rs1160603466 3550 dbSNP
rs776361401 3554 dbSNP
rs1337605287 3555 dbSNP
rs77326415 3559 dbSNP
rs192056035 3560 dbSNP
rs1336204388 3561 dbSNP
rs1001219617 3566 dbSNP
rs74659866 3567 dbSNP
rs1328218009 3584 dbSNP
rs1048154977 3586 dbSNP
rs1264566842 3593 dbSNP
rs549274940 3594 dbSNP
rs571775499 3595 dbSNP
rs1036904941 3598 dbSNP
rs943928113 3600 dbSNP
rs1184599883 3601 dbSNP
rs147506883 3606 dbSNP
rs777759977 3610 dbSNP
rs11557597 3611 dbSNP
rs1177625883 3613 dbSNP
rs771818300 3613 dbSNP
rs80062234 3614 dbSNP
rs369155223 3618 dbSNP
rs1302279114 3626 dbSNP
rs1215654833 3640 dbSNP
rs1397281935 3645 dbSNP
rs1005630090 3647 dbSNP
rs1326733098 3650 dbSNP
rs925331431 3653 dbSNP
rs1335668625 3655 dbSNP
rs979528172 3657 dbSNP
rs370202132 3661 dbSNP
rs1026239794 3662 dbSNP
rs967221239 3666 dbSNP
rs747874780 3672 dbSNP
rs550094998 3677 dbSNP
rs1248970423 3678 dbSNP
rs1328617692 3678 dbSNP
rs1483030912 3678 dbSNP
rs1200510696 3689 dbSNP
rs1431916239 3690 dbSNP
rs1175620422 3694 dbSNP
rs1373896985 3694 dbSNP
rs530405971 3694 dbSNP
rs992321741 3699 dbSNP
rs1056089664 3704 dbSNP
rs960913868 3715 dbSNP
rs1304946982 3728 dbSNP
rs35961762 3728 dbSNP
rs1033898791 3731 dbSNP
rs367947297 3746 dbSNP
rs904900571 3748 dbSNP
rs1308912487 3749 dbSNP
rs1382195973 3757 dbSNP
rs567082163 3758 dbSNP
rs1027088912 3760 dbSNP
rs1359227248 3775 dbSNP
rs1341997289 3780 dbSNP
rs754391197 3781 dbSNP
rs1223861367 3785 dbSNP
rs547192109 3789 dbSNP
rs896940730 3801 dbSNP
rs1036832433 3802 dbSNP
rs1487692144 3805 dbSNP
rs1132241 3813 dbSNP
rs1262648630 3815 dbSNP
rs1008066508 3816 dbSNP
rs1043489879 3822 dbSNP
rs1389619846 3823 dbSNP
rs1461538398 3826 dbSNP
rs891025577 3828 dbSNP
rs1049679842 3829 dbSNP
rs1393195982 3830 dbSNP
rs1162369921 3831 dbSNP
rs946466701 3833 dbSNP
rs1363546457 3839 dbSNP
rs1380180637 3849 dbSNP
rs1463322636 3862 dbSNP
rs1373503408 3867 dbSNP
rs1169624353 3869 dbSNP
rs1426610349 3870 dbSNP
rs1254844770 3871 dbSNP
rs932590102 3878 dbSNP
rs527355470 3881 dbSNP
rs143245083 3882 dbSNP
rs373945906 3884 dbSNP
rs1320464529 3893 dbSNP
rs1044157130 3894 dbSNP
rs1261691260 3909 dbSNP
rs139349383 3914 dbSNP
rs1186907273 3926 dbSNP
rs1247689076 3929 dbSNP
rs1445297216 3931 dbSNP
rs531364081 3941 dbSNP
rs147314271 3942 dbSNP
rs1159489441 3947 dbSNP
rs922509089 3950 dbSNP
rs60233055 3959 dbSNP
rs964009848 3960 dbSNP
rs879144039 3961 dbSNP
rs926810475 3963 dbSNP
rs1319431403 3964 dbSNP
rs909918773 3967 dbSNP
rs138126006 3969 dbSNP
rs1312285281 3970 dbSNP
rs1377548931 3972 dbSNP
rs751903389 3976 dbSNP
rs758572217 3995 dbSNP
rs879042654 3995 dbSNP
rs952436259 4000 dbSNP
rs554362947 4001 dbSNP
rs752941816 4005 dbSNP
rs540851253 4007 dbSNP
rs764486665 4011 dbSNP
rs879075388 4011 dbSNP
rs1392817048 4012 dbSNP
rs540022869 4019 dbSNP
rs186078555 4024 dbSNP
rs879048344 4026 dbSNP
rs558267784 4032 dbSNP
rs1460277791 4041 dbSNP
rs960221128 4042 dbSNP
rs1008035503 4043 dbSNP
rs1177703224 4044 dbSNP
rs1396745307 4050 dbSNP
rs1410120663 4068 dbSNP
rs1471474336 4069 dbSNP
rs878877301 4071 dbSNP
rs1034601072 4080 dbSNP
rs1429504769 4082 dbSNP
rs763145727 4083 dbSNP
rs1001821971 4084 dbSNP
rs904827554 4091 dbSNP
rs752854460 4111 dbSNP
rs1299225161 4116 dbSNP
rs765498593 4122 dbSNP
rs537830531 4130 dbSNP
rs1052221108 4133 dbSNP
rs996775009 4145 dbSNP
rs11557596 4148 dbSNP
rs1195525192 4153 dbSNP
rs1482287667 4161 dbSNP
rs373678735 4169 dbSNP
rs538220159 4169 dbSNP
rs903805178 4176 dbSNP
rs1235760743 4180 dbSNP
rs759492020 4189 dbSNP
rs1205369407 4197 dbSNP
rs150406447 4199 dbSNP
rs1272624793 4201 dbSNP
rs370961852 4204 dbSNP
rs79387874 4210 dbSNP
rs945384300 4211 dbSNP
rs536095466 4219 dbSNP
rs1377114218 4226 dbSNP
rs568703224 4229 dbSNP
rs1409994890 4231 dbSNP
rs1171947414 4232 dbSNP
rs1434080936 4233 dbSNP
rs567244571 4239 dbSNP
rs1325901745 4240 dbSNP
rs1056458536 4251 dbSNP
rs114111960 4253 dbSNP
rs1308020193 4254 dbSNP
rs926808169 4257 dbSNP
rs981380192 4258 dbSNP
rs570492822 4259 dbSNP
rs1344607298 4262 dbSNP
rs984545645 4264 dbSNP
rs1275211805 4265 dbSNP
rs547436360 4267 dbSNP
rs918650082 4267 dbSNP
rs1292462437 4270 dbSNP
rs1490773534 4274 dbSNP
rs930875825 4276 dbSNP
rs1245732182 4288 dbSNP
rs992967830 4289 dbSNP
rs1471203104 4294 dbSNP
rs960190136 4301 dbSNP
rs1364543049 4308 dbSNP
rs1034527386 4316 dbSNP
rs1366785430 4317 dbSNP
rs770750447 4335 dbSNP
rs973710437 4348 dbSNP
rs527514914 4359 dbSNP
rs1322021397 4360 dbSNP
rs968977487 4361 dbSNP
rs1431738334 4365 dbSNP
rs1471814052 4368 dbSNP
rs527685179 4369 dbSNP
rs961045282 4373 dbSNP
rs1015298204 4384 dbSNP
rs1227831802 4387 dbSNP
rs1281685245 4388 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acUGCAACCUCCGCCUCCCAg 3'
7 - 27
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1048188
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_ptb_knockdown
Location of target site ENST00000372890.4 | 3UTR | UGGCUCACUGCAACCUCCGCCUCCCAGGGUCAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000372890.4 | 3UTR | GGCUCAGCCUCCCAAAGUGCUGGGAUUACAGGCGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000372890.4 | 3UTR | CCUGGCUCAGCCUCCCAAAGUGCUGGGAUUACAGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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