pre-miRNA Information
pre-miRNA hsa-mir-4708   
Genomic Coordinates chr14: 65335117 - 65335183
Description Homo sapiens miR-4708 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4708-5p
Sequence 9| AGAGAUGCCGCCUUGCUCCUU |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1017378847 9 dbSNP
rs750825813 10 dbSNP
rs1297395738 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF429   
Synonyms -
Description zinc finger protein 429
Transcript NM_001001415   
Expression
Putative miRNA Targets on ZNF429
3'UTR of ZNF429
(miRNA target sites are highlighted)
>ZNF429|NM_001001415|3'UTR
   1 CATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAAAAAAAATTAGCCAGGCGTGGTGGTGGGCACTTGTA
  81 GTCCCACCTACTCGGGAGGCTGAGGCAGGAGAATGGCCTGAACCCGGAGGTGGAGCTTGCATTGAGCCAAGATCACACCA
 161 CTGCACTCCAGCCTGGGTGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAATTCATAGGC
 241 CAGGTATGGTGGCTCATGCCTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTCA
 321 AGACCAGCCTGGTCAACATGGTAAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGATGTGGTGGCACATGCCTGT
 401 AGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGCCAGAGGTAGCAGTGAGCTGAGATCACGC
 481 CACTACACTCCAGCCTGGATGACAAAACAAGACTCTGTCTAAAAAATATATAAATAAATAAAAGAAAGAAAATTCATAGT
 561 AGAGAGAAACCTTACAAATGTGTAGAATGTGGCAAAACTCGTTTTAACTAATGCTCACATCTTATTGCATAGAAAAGCAT
 641 TTATACCTGAAAAAAGGTATACAAATTTAAAAAATGTGGAAAAGCCATTAAAATCTGTTCACATCTTAACAACAGAGAGT
 721 TGATACTTAATAAGAGCATTGTAAGTGCAATTACTGTCAAACAATCTTGTAGAAAATATCATCCTTTAAAGTGAATGAGA
 801 CTAGTCTGAGGAAAAACATTACAAATGTAAAGAGGGTTATAGTGCATTTACTTGTATCACAGATCTTGTTGTACACATTT
 881 TATACTAGAGGAAAACCCTGAAGCAGTTGCACCAACTTTGTTCAACATCAGAAATTTATATTGGAGAAAAATCCAGCAAG
 961 TGTAATAAATTTGGAAAAACTTTTTTTTCCCCAAAAACTATACCTCAGGAAACAATGGAGAGTTTATATTAACATATATT
1041 TTTGCATATGGCCATATGTATAAAAATATTTAATTCAAAATTGAATTTAAAAAGTCTACATAAATATCATACATAGATAT
1121 GTATGATATTGAATACATGTATTAAATACATAGAATATGATATTTAATACATAGAAAAGTCTACATGAATATCAGAATTT
1201 ACAGTAGAAACAACTAAGACACAAACACTTGAGACATTACACTAAAGTGCTGAGTATAGAAAATAAAACTAAAGTTGTTA
1281 AATTATTTGTATATAACTTTTAAAAGAGTGGAAGATATTTTGCAAAGTTATATTCAAAGTGTACTTTTTATTTATTTTTT
1361 TGAGATGGAGTCTCACTTTGTTGCCTACGTTGGAGTTCAGTGGCACAATTTCAGCTTGCTGCCAACTTCGACCTTTGGGT
1441 TCAAGCAGTTCTCCTGCCACAGCCTCCTGAGTAGCTGGGAATACAGGCATACACCAGCATGTCTGGCTATTTTTTTTTTT
1521 TTTTGTATTTTTAGTAGAGATGAGATTTCACCATTTTGTCCAGGGTGGTCTCAAACTCTTCATCTCAAGTGATCTGCCCA
1601 CCTTGGCCTCCCAGAGTGCTGGGATTGCAGCCATGAGCCACTGCACCCAGCCCAAAGTATGCTTTTAAAAATATGTATAT
1681 ATATAAAATTTTTGAAAAGCAAATTATGATATAATTCAAGTATCAAATTACTTCATGCTGTTTCATTGTTCCTATTCACA
1761 TGTGAAAGCATGTGATCAATTATTGCTGCATCACATATAGACTCATTAGGTGGAAATTATGGCCTCTTCTGTAAAAAAGT
1841 AAGGACATTAAAATGTAAGATGCTTGATGAAAATCTAAGTGGAGAGGCTCTTTGTGGTTAACTTATTGAGTGATGTATGA
1921 GGTCGATGTTCAGAGTAATATGCCTCTGTATTACAGTGATAGAAAATATTTTTTAGTTAAAAGTGAATTTATAATAAAAT
2001 TGTAAATCATTTTAGTGATTGAGCTTTTATGTTATAAAATGCAGTATATTTCAAAATTTTTAAATTATATGTAAATTTGA
2081 TTTTATTTGTTACCATGTTAAGACTATTGTGCATTTAATGAAGCATTATTATGCTATCAACTTTAACCTATCCCACGTTA
2161 CTCAAGGGTGTAGCTAAATGAAGGTAGCAGTATGCTATTTAGTAACATAGTGGAATAGCATCTCTAGTAATCTCTTTTGC
2241 CAGTAGCTTTAACTGGCAGATAAGTTAATATTGTTCCCATAGGTTAAATATTTATCCTTTTTTTGATATTTAAATTTTTT
2321 TCTTATTTTTTTGTGGGTACATAATATGTGTATATATTTATGCAAATCTGGCATATTTTGATAGAGGCATACAATATGTA
2401 ATAATTACATCAATTACATCAGGGTAAATTATGTAGCCATTACTTGTAACATTTATCTTTTACAAACAACTCAATTATGC
2481 ACTTTTAGTTATTTTAAAGTGTACAATTAAATTGCTATTGACTGCATGGTTATCTTTGTGGTATAAAAATTTATATATAA
2561 GTATAAATAAACTCATTTCTGAGTCTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuccUCGUUCCGCCGUAGAGa 5'
              ||:::  : ||||||| 
Target 5' acatAGTGGAATAGCATCTCt 3'
2205 - 2225 145.00 -13.20
2
miRNA  3' uucCUCGUUCCGCCGUAGAGa 5'
             |||| || |  |||||| 
Target 5' acaGAGCCAGACTCCATCTCa 3'
180 - 200 134.00 -12.60
3
miRNA  3' uuccUCGUUCCGCCGUAGAGa 5'
              :|:||  |  |||||| 
Target 5' acatGGTAAAACCCCATCTCt 3'
336 - 356 121.00 -9.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN6417238 30 COSMIC
COSN27074986 738 COSMIC
COSN6139927 751 COSMIC
COSN1762877 928 COSMIC
COSN7118268 1054 COSMIC
COSN6417239 1526 COSMIC
COSN5850244 1528 COSMIC
COSN26280251 1878 COSMIC
COSN30046951 1969 COSMIC
COSN26125057 2277 COSMIC
COSN15895120 2434 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs570604289 1 dbSNP
rs1309158534 2 dbSNP
rs779252683 4 dbSNP
rs748752593 7 dbSNP
rs1334334825 8 dbSNP
rs757830372 12 dbSNP
rs971955187 13 dbSNP
rs1488988249 14 dbSNP
rs746622317 15 dbSNP
rs770733088 16 dbSNP
rs776476112 19 dbSNP
rs1190545452 20 dbSNP
rs1172090790 21 dbSNP
rs1420895748 23 dbSNP
rs1453644603 24 dbSNP
rs368056217 29 dbSNP
rs370179594 29 dbSNP
rs538131068 30 dbSNP
rs745763333 30 dbSNP
rs372267989 31 dbSNP
rs1166814599 32 dbSNP
rs1176462225 32 dbSNP
rs1369647154 32 dbSNP
rs1409338684 32 dbSNP
rs1417224242 32 dbSNP
rs1451400224 32 dbSNP
rs35018389 32 dbSNP
rs556534605 32 dbSNP
rs749033598 32 dbSNP
rs768554749 32 dbSNP
rs774379538 32 dbSNP
rs775539667 32 dbSNP
rs1459421967 34 dbSNP
rs1166602694 35 dbSNP
rs1292280270 36 dbSNP
rs1394785370 37 dbSNP
rs1452661250 39 dbSNP
rs1239586632 40 dbSNP
rs1211214924 43 dbSNP
rs1286866176 44 dbSNP
rs1363890280 51 dbSNP
rs1392560637 53 dbSNP
rs1307450090 54 dbSNP
rs1475018637 56 dbSNP
rs1185735523 57 dbSNP
rs1342248829 59 dbSNP
rs1370538766 62 dbSNP
rs144238909 63 dbSNP
rs1032394387 67 dbSNP
rs892222980 70 dbSNP
rs1158495294 75 dbSNP
rs1303240479 76 dbSNP
rs951967010 79 dbSNP
rs1420926275 84 dbSNP
rs1298304192 85 dbSNP
rs1374436514 89 dbSNP
rs376394578 94 dbSNP
rs985726788 95 dbSNP
rs148704663 103 dbSNP
rs1182857185 110 dbSNP
rs144613543 119 dbSNP
rs1250331826 122 dbSNP
rs572463569 126 dbSNP
rs369508136 127 dbSNP
rs1290401700 130 dbSNP
rs558319267 137 dbSNP
rs1218685805 143 dbSNP
rs1323165429 148 dbSNP
rs1312954961 152 dbSNP
rs1223073022 156 dbSNP
rs1355791523 175 dbSNP
rs1242352406 177 dbSNP
rs1286784842 178 dbSNP
rs1482993449 184 dbSNP
rs1198935671 185 dbSNP
rs1258615339 186 dbSNP
rs1443291131 188 dbSNP
rs1364845567 192 dbSNP
rs1444109025 199 dbSNP
rs1162548028 200 dbSNP
rs1184701855 200 dbSNP
rs1207599401 200 dbSNP
rs1214654987 200 dbSNP
rs1228730296 200 dbSNP
rs1265727694 200 dbSNP
rs1268736219 200 dbSNP
rs1269821497 200 dbSNP
rs1326565113 200 dbSNP
rs1344860655 200 dbSNP
rs1473221656 200 dbSNP
rs1489155162 200 dbSNP
rs531427318 200 dbSNP
rs913681705 207 dbSNP
rs1385229616 208 dbSNP
rs1369802438 210 dbSNP
rs1294128206 212 dbSNP
rs1453326442 212 dbSNP
rs1161850082 213 dbSNP
rs946200676 213 dbSNP
rs1458071855 214 dbSNP
rs1442120858 215 dbSNP
rs1041931542 218 dbSNP
rs1185392379 218 dbSNP
rs1159829078 220 dbSNP
rs1209165958 221 dbSNP
rs1464162780 222 dbSNP
rs71176896 222 dbSNP
rs146894140 223 dbSNP
rs1254237706 224 dbSNP
rs796890973 225 dbSNP
rs1302107129 226 dbSNP
rs1434399677 227 dbSNP
rs376457321 228 dbSNP
rs1390554976 232 dbSNP
rs1329081524 233 dbSNP
rs1378883173 234 dbSNP
rs1447394688 235 dbSNP
rs904739152 236 dbSNP
rs1302649660 237 dbSNP
rs1000460288 243 dbSNP
rs868307862 243 dbSNP
rs1055779147 244 dbSNP
rs1378672491 245 dbSNP
rs541920897 245 dbSNP
rs1169196823 247 dbSNP
rs894460455 248 dbSNP
rs1249584323 254 dbSNP
rs1014292004 256 dbSNP
rs944678025 259 dbSNP
rs1024801859 260 dbSNP
rs1346005120 275 dbSNP
rs962191136 284 dbSNP
rs751766452 285 dbSNP
rs993697735 287 dbSNP
rs976394804 290 dbSNP
rs921836108 291 dbSNP
rs113751359 295 dbSNP
rs182988303 296 dbSNP
rs1430893642 298 dbSNP
rs975567027 299 dbSNP
rs1377798901 300 dbSNP
rs1398135570 302 dbSNP
rs1461141759 304 dbSNP
rs1168154039 305 dbSNP
rs562014488 306 dbSNP
rs925055608 307 dbSNP
rs529555066 324 dbSNP
rs1391495232 326 dbSNP
rs1168598006 338 dbSNP
rs935052423 339 dbSNP
rs1366299419 340 dbSNP
rs1189415768 342 dbSNP
rs566531262 344 dbSNP
rs1365428013 354 dbSNP
rs1255878877 369 dbSNP
rs541382122 377 dbSNP
rs1249807774 378 dbSNP
rs1052141393 382 dbSNP
rs896133096 384 dbSNP
rs1483958877 389 dbSNP
rs1276905648 390 dbSNP
rs910494092 393 dbSNP
rs1355976394 394 dbSNP
rs1282613760 395 dbSNP
rs1247529323 400 dbSNP
rs1303541361 401 dbSNP
rs1341434271 402 dbSNP
rs1288054905 412 dbSNP
rs965671718 414 dbSNP
rs1013218331 416 dbSNP
rs1045728616 419 dbSNP
rs1372903266 424 dbSNP
rs1331793895 426 dbSNP
rs559894747 427 dbSNP
rs1388179387 430 dbSNP
rs1164629222 439 dbSNP
rs995644453 440 dbSNP
rs913641628 446 dbSNP
rs1027096405 456 dbSNP
rs1042247438 457 dbSNP
rs527379146 466 dbSNP
rs140592121 479 dbSNP
rs1004250054 480 dbSNP
rs1211873190 488 dbSNP
rs1357238954 489 dbSNP
rs1267927831 491 dbSNP
rs1265321507 492 dbSNP
rs1019606224 495 dbSNP
rs1352914284 497 dbSNP
rs1289486770 499 dbSNP
rs1435212619 499 dbSNP
rs1328829449 500 dbSNP
rs1056043042 513 dbSNP
rs1405630558 514 dbSNP
rs1387399664 519 dbSNP
rs894762712 521 dbSNP
rs1458591987 526 dbSNP
rs1412704448 529 dbSNP
rs752100499 530 dbSNP
rs1193462765 532 dbSNP
rs1014667036 539 dbSNP
rs1045734118 540 dbSNP
rs1245059479 540 dbSNP
rs1452430335 542 dbSNP
rs570612321 544 dbSNP
rs531564846 545 dbSNP
rs1331654078 547 dbSNP
rs550022536 549 dbSNP
rs1219169827 554 dbSNP
rs921860341 557 dbSNP
rs187616813 559 dbSNP
rs1436548852 560 dbSNP
rs1027422236 562 dbSNP
rs953311049 563 dbSNP
rs1437084438 567 dbSNP
rs1389122102 570 dbSNP
rs755484653 571 dbSNP
rs1412718726 578 dbSNP
rs1163979879 585 dbSNP
rs1348013597 593 dbSNP
rs1174436776 599 dbSNP
rs369012300 601 dbSNP
rs529297093 602 dbSNP
rs770080230 604 dbSNP
rs1294094650 605 dbSNP
rs10406824 610 dbSNP
rs1209800850 611 dbSNP
rs547765525 612 dbSNP
rs1399481637 614 dbSNP
rs565979105 617 dbSNP
rs192514272 619 dbSNP
rs1294696335 626 dbSNP
rs976117013 628 dbSNP
rs1365423945 629 dbSNP
rs1219589233 630 dbSNP
rs1302069537 638 dbSNP
rs1360864400 639 dbSNP
rs1445511397 639 dbSNP
rs1334733946 642 dbSNP
rs1435476989 648 dbSNP
rs1020628254 650 dbSNP
rs966835717 651 dbSNP
rs1451591104 657 dbSNP
rs73548628 661 dbSNP
rs925050987 663 dbSNP
rs1266613144 670 dbSNP
rs199642352 680 dbSNP
rs1239780614 683 dbSNP
rs1212243550 686 dbSNP
rs995696183 688 dbSNP
rs991694981 696 dbSNP
rs1213848311 697 dbSNP
rs1264825685 714 dbSNP
rs1311530298 716 dbSNP
rs1226462485 717 dbSNP
rs1381049508 718 dbSNP
rs377706970 719 dbSNP
rs1180965330 720 dbSNP
rs1409135601 722 dbSNP
rs1411331899 724 dbSNP
rs116401510 726 dbSNP
rs887267818 727 dbSNP
rs1165393282 728 dbSNP
rs1004302321 731 dbSNP
rs1431675179 735 dbSNP
rs1355407769 740 dbSNP
rs1164333308 749 dbSNP
rs1046116517 757 dbSNP
rs1020116897 759 dbSNP
rs537210763 764 dbSNP
rs185079425 765 dbSNP
rs1028308950 767 dbSNP
rs1480671122 768 dbSNP
rs1007347259 778 dbSNP
rs1218941160 793 dbSNP
rs71176897 803 dbSNP
rs762051731 803 dbSNP
rs984153764 804 dbSNP
rs1302542251 812 dbSNP
rs1273612515 826 dbSNP
rs1227535166 836 dbSNP
rs1348604069 837 dbSNP
rs1377422330 841 dbSNP
rs1290137087 845 dbSNP
rs953315824 847 dbSNP
rs1017396187 855 dbSNP
rs1313992656 856 dbSNP
rs1434624068 861 dbSNP
rs901726685 863 dbSNP
rs1353653224 864 dbSNP
rs997458672 865 dbSNP
rs1237278144 866 dbSNP
rs979337754 871 dbSNP
rs1410484950 885 dbSNP
rs559560720 886 dbSNP
rs1420139777 897 dbSNP
rs1287504642 898 dbSNP
rs925158779 920 dbSNP
rs144439425 925 dbSNP
rs987950401 928 dbSNP
rs917672053 942 dbSNP
rs760179305 951 dbSNP
rs979125120 959 dbSNP
rs980869191 961 dbSNP
rs926306104 962 dbSNP
rs1269728354 964 dbSNP
rs1484077701 965 dbSNP
rs1182254446 971 dbSNP
rs1237450147 975 dbSNP
rs1032090347 976 dbSNP
rs1217528215 981 dbSNP
rs1311494065 981 dbSNP
rs527305081 981 dbSNP
rs1373517428 983 dbSNP
rs1326821040 986 dbSNP
rs931599249 989 dbSNP
rs1386924412 991 dbSNP
rs768595748 994 dbSNP
rs189506970 998 dbSNP
rs991621433 999 dbSNP
rs1382229790 1004 dbSNP
rs1048634571 1017 dbSNP
rs887318791 1019 dbSNP
rs1187558374 1021 dbSNP
rs1463219034 1022 dbSNP
rs1249696111 1023 dbSNP
rs940208859 1028 dbSNP
rs34024668 1034 dbSNP
rs869304021 1034 dbSNP
rs1482914435 1036 dbSNP
rs950326066 1037 dbSNP
rs1041187269 1039 dbSNP
rs901280066 1045 dbSNP
rs1350127453 1047 dbSNP
rs1304179392 1049 dbSNP
rs151188786 1058 dbSNP
rs1298215186 1061 dbSNP
rs1049091499 1065 dbSNP
rs1301596081 1067 dbSNP
rs887826024 1067 dbSNP
rs1028777969 1068 dbSNP
rs140214953 1074 dbSNP
rs1376687187 1077 dbSNP
rs1447307511 1079 dbSNP
rs112531328 1083 dbSNP
rs1391610284 1084 dbSNP
rs113309740 1086 dbSNP
rs1000159261 1089 dbSNP
rs1038817345 1090 dbSNP
rs1032279283 1094 dbSNP
rs1445186051 1097 dbSNP
rs1202120783 1101 dbSNP
rs1312173149 1106 dbSNP
rs533518333 1108 dbSNP
rs778299865 1108 dbSNP
rs1042298121 1113 dbSNP
rs57144387 1113 dbSNP
rs1024790076 1119 dbSNP
rs1218136533 1121 dbSNP
rs566809271 1122 dbSNP
rs1228691385 1123 dbSNP
rs1340266996 1124 dbSNP
rs902466382 1133 dbSNP
rs563999145 1138 dbSNP
rs1356608669 1139 dbSNP
rs1306928288 1143 dbSNP
rs980538166 1143 dbSNP
rs1427230161 1151 dbSNP
rs926329405 1152 dbSNP
rs1257168028 1157 dbSNP
rs1032018732 1160 dbSNP
rs150313591 1166 dbSNP
rs1366501024 1167 dbSNP
rs1456317543 1168 dbSNP
rs1189306176 1171 dbSNP
rs1475505391 1178 dbSNP
rs1250955413 1180 dbSNP
rs144894869 1184 dbSNP
rs1181599540 1187 dbSNP
rs1180424337 1189 dbSNP
rs533880161 1193 dbSNP
rs1012021449 1196 dbSNP
rs1264073800 1203 dbSNP
rs1235502675 1205 dbSNP
rs1336162562 1206 dbSNP
rs771413606 1211 dbSNP
rs1407520748 1212 dbSNP
rs1470519171 1213 dbSNP
rs1190710238 1214 dbSNP
rs1337030012 1219 dbSNP
rs761645479 1220 dbSNP
rs8102740 1227 dbSNP
rs561869307 1234 dbSNP
rs1385904684 1235 dbSNP
rs764978800 1240 dbSNP
rs529192521 1242 dbSNP
rs971577092 1243 dbSNP
rs1461738651 1255 dbSNP
rs901335333 1258 dbSNP
rs932780563 1259 dbSNP
rs1156878476 1260 dbSNP
rs982052778 1265 dbSNP
rs919515936 1268 dbSNP
rs553752499 1271 dbSNP
rs1182558617 1274 dbSNP
rs951037934 1283 dbSNP
rs1265498573 1292 dbSNP
rs1049840873 1294 dbSNP
rs1469176808 1298 dbSNP
rs547407403 1307 dbSNP
rs1267832417 1309 dbSNP
rs1000211023 1310 dbSNP
rs1353420485 1311 dbSNP
rs1031664540 1319 dbSNP
rs1231858633 1319 dbSNP
rs892411388 1321 dbSNP
rs573674630 1323 dbSNP
rs1435074373 1341 dbSNP
rs1272539803 1343 dbSNP
rs1329032686 1345 dbSNP
rs1369166439 1345 dbSNP
rs1300032487 1346 dbSNP
rs1039080297 1347 dbSNP
rs2681380 1348 dbSNP
rs1387645835 1351 dbSNP
rs1277247780 1354 dbSNP
rs1025261466 1355 dbSNP
rs539423067 1357 dbSNP
rs1200317330 1362 dbSNP
rs1393566879 1368 dbSNP
rs980972320 1375 dbSNP
rs1454822034 1384 dbSNP
rs551766295 1385 dbSNP
rs1033406435 1388 dbSNP
rs1450999909 1389 dbSNP
rs1219337691 1390 dbSNP
rs569770736 1399 dbSNP
rs952433806 1407 dbSNP
rs10406870 1408 dbSNP
rs908217228 1409 dbSNP
rs1199450383 1413 dbSNP
rs1342242164 1415 dbSNP
rs1234614324 1420 dbSNP
rs902393941 1424 dbSNP
rs1295192186 1427 dbSNP
rs149045290 1430 dbSNP
rs1053425797 1431 dbSNP
rs1423191276 1432 dbSNP
rs1412626441 1437 dbSNP
rs1373713143 1438 dbSNP
rs894795406 1440 dbSNP
rs1454887071 1445 dbSNP
rs1389752537 1447 dbSNP
rs1477014184 1451 dbSNP
rs977040897 1452 dbSNP
rs35991360 1462 dbSNP
rs535312981 1464 dbSNP
rs1322206070 1465 dbSNP
rs553420641 1467 dbSNP
rs1003005381 1468 dbSNP
rs1277113421 1469 dbSNP
rs1341070518 1472 dbSNP
rs139035057 1475 dbSNP
rs1362419645 1476 dbSNP
rs545447533 1479 dbSNP
rs936052447 1490 dbSNP
rs1357233901 1493 dbSNP
rs950942474 1493 dbSNP
rs985028768 1496 dbSNP
rs1435380912 1497 dbSNP
rs866797623 1498 dbSNP
rs891793291 1502 dbSNP
rs964672421 1505 dbSNP
rs1292028463 1508 dbSNP
rs1359090102 1510 dbSNP
rs1482436621 1510 dbSNP
rs59611982 1510 dbSNP
rs753480941 1510 dbSNP
rs564119797 1515 dbSNP
rs975186806 1517 dbSNP
rs1046311300 1521 dbSNP
rs1206186776 1525 dbSNP
rs949243662 1526 dbSNP
rs1044852204 1528 dbSNP
rs1262691449 1530 dbSNP
rs1336908132 1531 dbSNP
rs1487411497 1533 dbSNP
rs1196177073 1534 dbSNP
rs576160621 1535 dbSNP
rs1415535961 1542 dbSNP
rs933408282 1542 dbSNP
rs1296485771 1543 dbSNP
rs1444667999 1544 dbSNP
rs1355314853 1546 dbSNP
rs1164564827 1551 dbSNP
rs906418029 1552 dbSNP
rs1042194169 1554 dbSNP
rs1166307127 1556 dbSNP
rs1472513489 1559 dbSNP
rs529222508 1560 dbSNP
rs1002054577 1561 dbSNP
rs549284769 1566 dbSNP
rs1480780636 1567 dbSNP
rs1033458864 1569 dbSNP
rs952506067 1570 dbSNP
rs1273517393 1576 dbSNP
rs1469639381 1576 dbSNP
rs1227713211 1580 dbSNP
rs1005253738 1587 dbSNP
rs1305021553 1590 dbSNP
rs1161906149 1594 dbSNP
rs1416606903 1596 dbSNP
rs923789373 1597 dbSNP
rs1225510774 1599 dbSNP
rs7507813 1600 dbSNP
rs1297078950 1603 dbSNP
rs1358122456 1604 dbSNP
rs1438910267 1624 dbSNP
rs961076204 1625 dbSNP
rs1397151570 1627 dbSNP
rs755141242 1636 dbSNP
rs922892900 1639 dbSNP
rs1457194897 1641 dbSNP
rs1318630176 1642 dbSNP
rs954428119 1644 dbSNP
rs985650391 1647 dbSNP
rs1424099933 1648 dbSNP
rs895098282 1649 dbSNP
rs1455250869 1654 dbSNP
rs1253420060 1672 dbSNP
rs73548629 1684 dbSNP
rs936104806 1687 dbSNP
rs1445553303 1688 dbSNP
rs1053200713 1700 dbSNP
rs1262418444 1705 dbSNP
rs1360104713 1706 dbSNP
rs913267187 1710 dbSNP
rs1239383535 1712 dbSNP
rs950096451 1726 dbSNP
rs1232412972 1727 dbSNP
rs529129545 1735 dbSNP
rs1046114822 1740 dbSNP
rs1304687699 1746 dbSNP
rs1381975739 1746 dbSNP
rs547590651 1747 dbSNP
rs1291131774 1748 dbSNP
rs1002510244 1753 dbSNP
rs1054920480 1761 dbSNP
rs1285367714 1765 dbSNP
rs888289711 1768 dbSNP
rs1395280703 1772 dbSNP
rs1187772681 1777 dbSNP
rs1426508597 1780 dbSNP
rs57197225 1784 dbSNP
rs1219063477 1787 dbSNP
rs74828233 1793 dbSNP
rs1482865026 1795 dbSNP
rs116870247 1799 dbSNP
rs1185894526 1806 dbSNP
rs1350369019 1821 dbSNP
rs756471909 1823 dbSNP
rs1445735880 1824 dbSNP
rs575599503 1826 dbSNP
rs1016433324 1832 dbSNP
rs1377933443 1837 dbSNP
rs997890249 1849 dbSNP
rs974764396 1865 dbSNP
rs1383298628 1869 dbSNP
rs1355360208 1873 dbSNP
rs1310589334 1876 dbSNP
rs1029724307 1880 dbSNP
rs954358237 1881 dbSNP
rs1375743018 1883 dbSNP
rs954799231 1891 dbSNP
rs1460096258 1892 dbSNP
rs985701287 1894 dbSNP
rs192529717 1899 dbSNP
rs530905256 1907 dbSNP
rs778070493 1915 dbSNP
rs549101867 1918 dbSNP
rs1335971923 1920 dbSNP
rs1383316717 1925 dbSNP
rs868804571 1926 dbSNP
rs1307075577 1927 dbSNP
rs540326794 1928 dbSNP
rs1253469993 1929 dbSNP
rs567502006 1936 dbSNP
rs770649227 1939 dbSNP
rs879792652 1943 dbSNP
rs913328059 1947 dbSNP
rs989314970 1947 dbSNP
rs1417101758 1949 dbSNP
rs2562399 1955 dbSNP
rs947984062 1961 dbSNP
rs1389347792 1965 dbSNP
rs1046050769 1970 dbSNP
rs529235920 1980 dbSNP
rs1298573766 1991 dbSNP
rs1460722239 2002 dbSNP
rs981487801 2003 dbSNP
rs927280371 2008 dbSNP
rs1167028015 2016 dbSNP
rs1475456196 2023 dbSNP
rs937310771 2024 dbSNP
rs1198989646 2028 dbSNP
rs1190671359 2034 dbSNP
rs1436331461 2034 dbSNP
rs1252925860 2045 dbSNP
rs1281143724 2046 dbSNP
rs1196803389 2048 dbSNP
rs1047220726 2055 dbSNP
rs888201341 2057 dbSNP
rs1462091000 2059 dbSNP
rs1235715201 2062 dbSNP
rs1054970104 2065 dbSNP
rs1278495218 2066 dbSNP
rs2562398 2070 dbSNP
rs1337228424 2076 dbSNP
rs941211427 2081 dbSNP
rs1439626456 2082 dbSNP
rs1392022349 2084 dbSNP
rs1036814058 2091 dbSNP
rs896926490 2098 dbSNP
rs1376678519 2099 dbSNP
rs998342269 2103 dbSNP
rs1464209100 2108 dbSNP
rs1016422052 2109 dbSNP
rs900751011 2110 dbSNP
rs1365551833 2121 dbSNP
rs571808002 2123 dbSNP
rs1453964439 2138 dbSNP
rs889457575 2141 dbSNP
rs1006520968 2148 dbSNP
rs1406532643 2154 dbSNP
rs12985995 2157 dbSNP
rs1469335000 2158 dbSNP
rs79291232 2159 dbSNP
rs1284173286 2162 dbSNP
rs79773636 2163 dbSNP
rs77440896 2164 dbSNP
rs1202907459 2188 dbSNP
rs1352230067 2193 dbSNP
rs957578020 2208 dbSNP
rs576751977 2210 dbSNP
rs1233150894 2211 dbSNP
rs184436226 2216 dbSNP
rs1441363652 2219 dbSNP
rs1402399972 2222 dbSNP
rs1393169785 2223 dbSNP
rs978125522 2226 dbSNP
rs1307753909 2229 dbSNP
rs1316149225 2230 dbSNP
rs145812313 2240 dbSNP
rs796642472 2241 dbSNP
rs958147449 2262 dbSNP
rs1393473324 2263 dbSNP
rs1195964031 2265 dbSNP
rs1478552150 2271 dbSNP
rs765011054 2274 dbSNP
rs1191666582 2282 dbSNP
rs1231321806 2285 dbSNP
rs1449197976 2288 dbSNP
rs916444980 2289 dbSNP
rs1209498250 2292 dbSNP
rs552311312 2298 dbSNP
rs982411206 2298 dbSNP
rs1234497145 2301 dbSNP
rs1338510243 2303 dbSNP
rs1268158817 2306 dbSNP
rs971542797 2307 dbSNP
rs1298927853 2315 dbSNP
rs543520173 2315 dbSNP
rs927913869 2315 dbSNP
rs929593854 2315 dbSNP
rs12973084 2318 dbSNP
rs189781688 2323 dbSNP
rs909629238 2326 dbSNP
rs1419287212 2329 dbSNP
rs941144149 2330 dbSNP
rs937362932 2331 dbSNP
rs80278473 2333 dbSNP
rs1476701083 2335 dbSNP
rs374617151 2338 dbSNP
rs1198431821 2341 dbSNP
rs1186676331 2342 dbSNP
rs1484413248 2343 dbSNP
rs1256666415 2344 dbSNP
rs984729980 2362 dbSNP
rs562537944 2364 dbSNP
rs2681382 2385 dbSNP
rs1266036427 2387 dbSNP
rs1036907299 2388 dbSNP
rs1340070386 2390 dbSNP
rs533070776 2392 dbSNP
rs1200462216 2404 dbSNP
rs1231315828 2406 dbSNP
rs1314781125 2407 dbSNP
rs1353643534 2407 dbSNP
rs890715714 2410 dbSNP
rs896972484 2414 dbSNP
rs1168309514 2423 dbSNP
rs1402239609 2425 dbSNP
rs114624519 2427 dbSNP
rs1411995086 2428 dbSNP
rs1292928380 2430 dbSNP
rs1031041830 2432 dbSNP
rs181367994 2433 dbSNP
rs530843209 2434 dbSNP
rs1390103088 2437 dbSNP
rs1181918127 2440 dbSNP
rs1051288881 2442 dbSNP
rs1230820165 2444 dbSNP
rs1011017378 2450 dbSNP
rs1305130224 2465 dbSNP
rs1023741796 2466 dbSNP
rs969596622 2467 dbSNP
rs981972328 2468 dbSNP
rs1295252233 2472 dbSNP
rs548989410 2473 dbSNP
rs1218365500 2475 dbSNP
rs1276668434 2482 dbSNP
rs1278019185 2482 dbSNP
rs1006573052 2483 dbSNP
rs1444550411 2486 dbSNP
rs1309688586 2492 dbSNP
rs1054106914 2502 dbSNP
rs1363263664 2505 dbSNP
rs893414063 2514 dbSNP
rs1228783579 2515 dbSNP
rs567388295 2518 dbSNP
rs1020502282 2525 dbSNP
rs1397289446 2527 dbSNP
rs1164949328 2530 dbSNP
rs531572295 2531 dbSNP
rs773084777 2538 dbSNP
rs1417991758 2540 dbSNP
rs971976704 2541 dbSNP
rs1405086136 2542 dbSNP
rs1178575291 2545 dbSNP
rs528595840 2551 dbSNP
rs1034863237 2552 dbSNP
rs909576822 2552 dbSNP
rs958769669 2560 dbSNP
rs1222476528 2563 dbSNP
rs1265955962 2563 dbSNP
rs1316419899 2585 dbSNP
rs571748504 2586 dbSNP
rs921030778 2587 dbSNP
rs932102936 2589 dbSNP
rs145104920 2590 dbSNP
rs762981515 2590 dbSNP
rs909215668 2591 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uucCUCGUUCCGCCGUAGAGa 5'
             |||| || |  |||||| 
Target 5' -caGAGCCAGACUCCAUCUCa 3'
1 - 20
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000358491.4 | 3UTR | CAGAGCCAGACUCCAUCUCAAAAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-4708-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT095681 RBM27 RNA binding motif protein 27 2 4
MIRT104033 USP42 ubiquitin specific peptidase 42 2 6
MIRT114773 CMPK1 cytidine/uridine monophosphate kinase 1 2 2
MIRT246923 CCND1 cyclin D1 2 2
MIRT392569 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT443949 LRIT3 leucine rich repeat, Ig-like and transmembrane domains 3 2 2
MIRT446695 PAPPA pappalysin 1 2 2
MIRT447383 VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2 2
MIRT449321 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449717 C1orf61 chromosome 1 open reading frame 61 2 2
MIRT449738 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT450531 PGLS 6-phosphogluconolactonase 2 2
MIRT455650 YARS tyrosyl-tRNA synthetase 2 2
MIRT458036 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT463468 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT466677 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 4
MIRT467789 SLC2A14 solute carrier family 2 member 14 2 2
MIRT468167 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT468652 SECISBP2L SECIS binding protein 2 like 2 6
MIRT469380 RER1 retention in endoplasmic reticulum sorting receptor 1 2 2
MIRT470346 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT472418 NCKAP1 NCK associated protein 1 2 2
MIRT474612 KLF3 Kruppel like factor 3 2 2
MIRT478703 CSRNP2 cysteine and serine rich nuclear protein 2 2 2
MIRT481008 BBC3 BCL2 binding component 3 2 4
MIRT483098 TFPI tissue factor pathway inhibitor 2 2
MIRT485113 SHISA6 shisa family member 6 2 2
MIRT497533 ZNF607 zinc finger protein 607 2 2
MIRT500644 TUBB2A tubulin beta 2A class IIa 2 6
MIRT500890 STRN striatin 2 4
MIRT501900 MED13 mediator complex subunit 13 2 2
MIRT506646 MAPK1 mitogen-activated protein kinase 1 2 4
MIRT512675 ENO4 enolase family member 4 2 2
MIRT516977 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT528754 RPS27 ribosomal protein S27 2 6
MIRT539670 ZBTB44 zinc finger and BTB domain containing 44 2 2
MIRT544129 PPIL1 peptidylprolyl isomerase like 1 2 2
MIRT546382 STOX2 storkhead box 2 2 4
MIRT562143 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568713 TMEM30B transmembrane protein 30B 2 2
MIRT571029 CENPP centromere protein P 2 2
MIRT572781 ZNF277 zinc finger protein 277 2 2
MIRT573162 SLC30A9 solute carrier family 30 member 9 2 2
MIRT609126 NUDT3 nudix hydrolase 3 2 2
MIRT609284 OAS3 2'-5'-oligoadenylate synthetase 3 2 2
MIRT613430 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT613770 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT616645 LRAT lecithin retinol acyltransferase 2 4
MIRT630892 SLC25A33 solute carrier family 25 member 33 2 2
MIRT636526 FAXC failed axon connections homolog 2 4
MIRT641394 NUBPL nucleotide binding protein like 2 2
MIRT641412 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT642528 CERS4 ceramide synthase 4 2 2
MIRT643186 HYPK huntingtin interacting protein K 2 2
MIRT647800 FRMD8 FERM domain containing 8 2 2
MIRT652150 TRIM71 tripartite motif containing 71 2 2
MIRT652602 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT661606 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT666339 SKAP2 src kinase associated phosphoprotein 2 2 2
MIRT670414 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671122 ZNF573 zinc finger protein 573 2 2
MIRT671155 ANKRD9 ankyrin repeat domain 9 2 2
MIRT671338 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT671869 ZNF429 zinc finger protein 429 2 2
MIRT671974 IKZF3 IKAROS family zinc finger 3 2 2
MIRT672064 KIAA0930 KIAA0930 2 2
MIRT672654 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672673 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT672771 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672929 LRRC2 leucine rich repeat containing 2 2 2
MIRT673159 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673272 RUNDC1 RUN domain containing 1 2 2
MIRT673332 THAP1 THAP domain containing 1 2 2
MIRT673351 SLC35F6 solute carrier family 35 member F6 2 2
MIRT673667 ZNF440 zinc finger protein 440 2 2
MIRT673904 DCTN6 dynactin subunit 6 2 2
MIRT674096 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674401 MYCBP MYC binding protein 2 2
MIRT674525 PRR23A proline rich 23A 2 2
MIRT674793 NPR1 natriuretic peptide receptor 1 2 2
MIRT674833 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 2
MIRT675066 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT675080 CCR6 C-C motif chemokine receptor 6 2 2
MIRT675126 FSD2 fibronectin type III and SPRY domain containing 2 2 2
MIRT679401 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT689229 RPS19 ribosomal protein S19 2 2
MIRT694008 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT699671 SFT2D2 SFT2 domain containing 2 2 2
MIRT706213 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT706548 GJD2 gap junction protein delta 2 2 2
MIRT707418 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT710648 GLUL glutamate-ammonia ligase 2 2
MIRT719393 NPCA1 Nasopharyngeal carcinoma 1 2 2
MIRT720166 PNPO pyridoxamine 5'-phosphate oxidase 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4708-5p Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-4708-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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