pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GBP4   
Synonyms Mpa2
Description guanylate binding protein 4
Transcript NM_052941   
Expression
Putative miRNA Targets on GBP4
3'UTR of GBP4
(miRNA target sites are highlighted)
>GBP4|NM_052941|3'UTR
   1 GAGCCTGAATATTCCAGGTAAGAAAATATAAAATGAGGTTTATTTTATTTTAATAACATAACACTGTTGCTCATTTTGTA
  81 AGTATATGTGTTATAGCAGTTTCATTCAAGAAAAGTTTAAAATTAAAAAGTGATTATCAAAGAATATCAGGGCCTGACAT
 161 CCACAAAAAACAAACTTAATTTTGATTGAACTAATAATTTATAAACATGGGAAACAAGTCAGAAGTAGTGACATTATTCC
 241 TAGAAAAGATTTAAGGAAAGCAAAAAGACAACTGGTAAGATTAAGAAGCCATTAACCATTTGCAATTTATATTATAGTCA
 321 CAGAAATAATTTCAGTTATGACTAGCTCTTGCCGATTAATGAGAAGAGAGCAGCTCCACAATTTTTAATTTTTTTAACTT
 401 TTATTTTAGATTCAGGGGTATATGTGCAGGTTTGTTACATAGGTAAACTGCATGTCATGGGGGTTTGGTGTGCAGATAAT
 481 TTTATCACACAATTATTAATCATAATACCCAATAGGTTTTTTTCTGATCTTCTCCCTCCTCCCAACCTACACCCTCAAGT
 561 AGACCCCAGTGTCTCTTGTTCTCCTCTGAGTATCCATGTGTTCTCTTTGTTTGGCCCCCATTTATAAGTGAGAACATGTG
 641 GTATTTGGGTTTCTGTTCCTGTGTTAGTTTGCTTATGATAATGGCTTCCAGCTCCATCCATATTGCTACAGAGGACATGA
 721 TCTTGTTGTTTTTTATGGCTGCATAGTATTCCATGGTGTTTGTATATACCACATTTTCATTATCCAGCCTATTATTAATG
 801 CACATTTAGGTTGATTCCTTATCTTTGCTATTGTGAACAGTGCTGCAATGGACATACACGTGCATGTGCCTTTATGGTAC
 881 AATGATTTATATTTCCTTGGGATATGCATTCCTTTGGGAATAATGGGATTGCTGAGTTGAATGGTAATTCTGAGTTCTTT
 961 GAGGAATCACCAACCTGCTTTCCACAGTGGCTAAACTAATTTACACTCCCACCAACAGTGTATGTGTTCCATTTTCTCCA
1041 CAACCTTGCCAGCATCTGTTATTTATTGACTTTCTAGTAACAGCCATTCTGACTGGTGTGAGATGGTATGCATTTCTGTA
1121 GTGATTAGTGATGATGAGTGATTTTTATATGCTTTTTAAATGCATATATGTCTTCTTTTGAAATGTGTTCATGTTCTTTG
1201 CCCACTTTCTTTTTAATGGGGTTGCTTGTTTTTCGCTTGTAAATTTTTTGAAGCTTCTTATAGATTCTGGATATTAGATC
1281 TTTGTTGGATGCATAGTTGGCAAATATTTTCTACCATTCTGTAGGTTGTCTGTTACTTTGTTAATTGTTTCATTTTGTTT
1361 TGTTTTTGTTTTTTGAAACAGGGTCTCACTTTGACACCCAGGCTGGAGTGCAGTAGCACAAACATGGGTCATTGTAGCCT
1441 CAACCTCCCAGGCTCAAGCAGTCCTTTCACCTCAACCCCCCACATAGCTGGGACTACAGGTGCTTACACCCAAGACCAGT
1521 TAATTTTTTGTATTTGTTTGTAGAGATGTGTTTTTCCATGTTGCCCAAGCTGGTCTTGAACTACTGAGCTCAAGCAATCT
1601 GCCTGCTTCAGCCTCCCAAAGTACTGGGATTTAGGCATGAGCCACCACATCTGGCCAATAGTTTCTTTTGATGTGCAGAA
1681 GCTCTTTAATTTAATTAGATCTCCTTTGTCAGTTTTTGTTTTTGCTGCAATTGCTTATGTTATCTTCATCATGAAATTTT
1761 AGCCAAGTCTTATGTCCAGAATGGTATTTCTTAGGTTATTTTTCAGAGTTTTTATAGTTTAATGTTTTATATTTAAGTCT
1841 TTAATCCTTCTTAAGTTGATTTTTGTATGCAGAGTAAGCTGGGGGCCCAGTTTCAATCTTCTGCATATGGCTAGCCAGTA
1921 ATCCCAGCACCATTTATTAAATGGGGACTTCTTTCCCCATTGCTTGTTTTTGTCAGCTTTGTCCAAGATCAGATGATTGT
2001 AGGTGTACAGCATTATTTCTGGACTCTCTGTTATGTTCCATTTATCTGTGTGTCTGTTTTTCTACTAATACCATGCTGTT
2081 TTGGTTACTGTAGCTCTGTAGTATGGTTTGAGGTTTGGTAACTTGATGCCTCCCCTTTTGTTCTTTATGTTTAGGATTGC
2161 CTTGGCTAGGCTCTTTTTTGGTTCCATATGAATTTTAAAGTAGTTTCTAATTCTGTGAAGAATGTCATTGGTAGTTTGAT
2241 AGGGATAGCATTGAACTATTTGCTCAACTCAACATTTTAGGAATTTATTTCTGCTGTCTAGTGCTCAAAACTTGCAGCTA
2321 GAATTGAGGGAAGAGAGAGACCTTCTTATATTGTTTTATATTGTTTGATACTCAGTACCTGTTTTAAGAAAAAACAACAA
2401 GGAAGTAAAACCAAAGACAGGCAGCCCAGCGCCAGGCCCAAAACCAGGCCTGGGCCTGCCTGGCCTAAACCCAGTAGTTA
2481 AAAATCAACTCATTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCAT
2561 CCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCACGCGCCTGTAGTCCCA
2641 GCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCA
2721 CTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAATCAACTCATAACTTAGAAACCGATGTTA
2801 TTCATAGATTCCAGACATTGTATAGAAGAACATTTGGAAACTCACTGCCTTGTTCTGTTTCTCTCTGACCACCAGTGCAT
2881 GCAGCCCCTGTCATGTACCGCCTGTTTGCTCAAATCAATCATGACCCTTTCATGTGAAATCTTTAGTGTTGTGAGCCCTT
2961 AAAAGGGACAGAAATTGTGCATTCAAGGAGCTTGGATTTTAAGGCAGCAGCTTGCTGATGCCACCAGCTGAAAAAAGCCC
3041 TTCCTTCTCCAACTCGGTGTCTGAGAAGTTTTGTCTGCAGCTCATCCTGCTACAGAATGAACTCCTTGTAATTCTACAAG
3121 ATATGCCATGGGCCTTTTCACAGGGGACACAGGCTTCTTAAAACAACCCGGCTTCCTCACCCTATGTCCTTTATTTACAA
3201 AGCTGTGCTCCTATTCATGAGCATGGAATGTTTTTCCATTTGTTTGTGACATCTCTTATTTCTTTCAGGGGTATCTTGTA
3281 ATTCTCATTATATATATCTTTTGCTTCCTTGGTTAGCTGTATTTTTAGGTATTTTAGTCTTCTTGTGGCAATTGTGAATG
3361 GGATTGCATTCCTGATTTGGCTCTTGGCTTAATGTTATTAACGCCACATTTTTTAAATAGACAAAAATATGAGATTAAAA
3441 ATGTTGAATTTTACTAACAATAAAAGTTGTTCAAAGGAAAACTATAAGGTTCTTGTTTCAACTCTGTCATAGGAAGAACA
3521 GGACAGTGAGCTGGCACAGAGTTAGGGAAACTGACTGTGTCTCATATTGGCTAGTGAGAGTGATCTGTTGGAATTGTATA
3601 TCAAAATTTTAATGTACATACATTTTGTCTAGCAATTCTACTATTGGGTATTTATATAGTACATATAAATATAAATGTAT
3681 ATGTTTAGTAAATATATACTTATAGTTAGTAAATATATTTTATATCTATTTAGTAAATATACTAAATGTCAGGCCTCTGA
3761 GCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCATGTACATACGTCCAGATGGCCTGAAGCAAGTGAAGAATCACAAA
3841 AGAAGTGAAAATGGCCTGTTCCTGCCTTAACTGATGACATTACCTTGTGAAATTCCTTCTCCTGGCTCATCCTGGCTCAA
3921 AAGCTCCCCCACTAAGCAACTTGTGACACCCACCTCTGCCCGCCAGAGAACAACCCCCTTTGACTGTAATTTTCCTTTAC
4001 CAACCCAAATCCTGTAAAATGGTCCCAACCCTATCTCCCTTCACTGACTGTCTTTTCGGACTCAGCCAGCCTGCACCCAG
4081 GTGATTAAAAAGCTTTATTGCTCACAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCCGUCCAAGGACCUAGUa 5'
            || |:||    ||||||| 
Target 5' cgAGACGGG----TGGATCAc 3'
2522 - 2538 149.00 -14.90
2
miRNA  3' ucucCGUCCAAGGACCUAGUa 5'
              |||    | |||:||| 
Target 5' agtaGCACAAACATGGGTCAt 3'
1412 - 1432 129.00 -11.70
3
miRNA  3' ucuccguccaAGGACCUAGUa 5'
                    |||||| ||| 
Target 5' aaattccttcTCCTGGCTCAt 3'
3890 - 3910 123.00 -12.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30451952 5 COSMIC
COSN29426169 7 COSMIC
COSN30151706 35 COSMIC
COSN26977213 41 COSMIC
COSN30701448 69 COSMIC
COSN6472326 87 COSMIC
COSN26395164 783 COSMIC
COSN30051885 839 COSMIC
COSN25140276 1032 COSMIC
COSN5865451 1205 COSMIC
COSN29837680 1843 COSMIC
COSN16195830 2169 COSMIC
COSN1462633 2336 COSMIC
COSN21309073 2493 COSMIC
COSN22376425 2528 COSMIC
COSN6472325 2855 COSMIC
COSN25983925 3049 COSMIC
COSN32064860 3197 COSMIC
COSN20090278 3389 COSMIC
COSN20095010 3390 COSMIC
COSN6472324 3551 COSMIC
COSN30340667 3677 COSMIC
COSN30217719 3961 COSMIC
COSN22105664 4058 COSMIC
COSN15094482 4074 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1043227339 1 dbSNP
rs776180448 3 dbSNP
rs1476168903 5 dbSNP
rs1258109569 17 dbSNP
rs1215745458 23 dbSNP
rs377676150 29 dbSNP
rs916134639 35 dbSNP
rs1258970970 37 dbSNP
rs746301492 38 dbSNP
rs777069082 48 dbSNP
rs990493612 52 dbSNP
rs1181429597 53 dbSNP
rs1425621786 53 dbSNP
rs1415185077 64 dbSNP
rs371873380 64 dbSNP
rs371760420 73 dbSNP
rs1298955485 74 dbSNP
rs1331021099 80 dbSNP
rs1434964194 81 dbSNP
rs1276909643 84 dbSNP
rs1346190312 86 dbSNP
rs623134 87 dbSNP
rs1199374093 93 dbSNP
rs1283409858 94 dbSNP
rs1355458639 100 dbSNP
rs988650880 108 dbSNP
rs1267622166 110 dbSNP
rs1449735325 115 dbSNP
rs1200915924 116 dbSNP
rs983639287 122 dbSNP
rs1247024820 129 dbSNP
rs1467959506 137 dbSNP
rs955859694 148 dbSNP
rs1271244063 150 dbSNP
rs779641838 152 dbSNP
rs1159269384 171 dbSNP
rs1234903793 176 dbSNP
rs1003602886 178 dbSNP
rs1356862446 178 dbSNP
rs374413262 195 dbSNP
rs1278756272 208 dbSNP
rs571094611 224 dbSNP
rs1326133495 229 dbSNP
rs1236344850 237 dbSNP
rs1332225726 241 dbSNP
rs1162270693 242 dbSNP
rs906557181 244 dbSNP
rs1307614841 247 dbSNP
rs1023575281 258 dbSNP
rs1240434048 271 dbSNP
rs1264278000 274 dbSNP
rs1027464721 277 dbSNP
rs973183134 288 dbSNP
rs1353681063 300 dbSNP
rs1211166763 302 dbSNP
rs769567006 308 dbSNP
rs552811528 315 dbSNP
rs1309292180 317 dbSNP
rs368149521 319 dbSNP
rs1196518167 334 dbSNP
rs1394350753 335 dbSNP
rs139707385 346 dbSNP
rs1179531654 348 dbSNP
rs1407421220 349 dbSNP
rs1471837339 353 dbSNP
rs569788349 354 dbSNP
rs1392076576 363 dbSNP
rs1391833834 368 dbSNP
rs1008768948 369 dbSNP
rs373639430 375 dbSNP
rs1468754203 384 dbSNP
rs572270110 392 dbSNP
rs1382452394 396 dbSNP
rs868095256 398 dbSNP
rs533331683 400 dbSNP
rs548173343 410 dbSNP
rs149700649 414 dbSNP
rs1251053177 416 dbSNP
rs1215426512 424 dbSNP
rs559384225 430 dbSNP
rs1283243676 438 dbSNP
rs541357749 440 dbSNP
rs947001793 442 dbSNP
rs1216728310 450 dbSNP
rs1352360932 454 dbSNP
rs1259707707 455 dbSNP
rs894731915 463 dbSNP
rs1458065864 466 dbSNP
rs1199708943 478 dbSNP
rs555561949 492 dbSNP
rs1440973565 494 dbSNP
rs139528215 500 dbSNP
rs746192343 507 dbSNP
rs1305004067 508 dbSNP
rs1047368880 510 dbSNP
rs1426162557 514 dbSNP
rs1332202024 524 dbSNP
rs1466443060 524 dbSNP
rs1035516092 529 dbSNP
rs1399598906 539 dbSNP
rs1399361674 544 dbSNP
rs982628864 545 dbSNP
rs1334171405 550 dbSNP
rs970835338 555 dbSNP
rs1192689429 568 dbSNP
rs779528464 581 dbSNP
rs1362692266 586 dbSNP
rs1023627691 587 dbSNP
rs1012213235 596 dbSNP
rs929061235 599 dbSNP
rs1434356015 604 dbSNP
rs1343066165 607 dbSNP
rs1202395790 612 dbSNP
rs1258262614 614 dbSNP
rs920310743 624 dbSNP
rs1488015030 632 dbSNP
rs1393278149 642 dbSNP
rs1016482288 643 dbSNP
rs150526477 645 dbSNP
rs1429691658 657 dbSNP
rs575301302 658 dbSNP
rs964556254 661 dbSNP
rs1467226151 665 dbSNP
rs1172823428 674 dbSNP
rs910379646 679 dbSNP
rs1397551952 689 dbSNP
rs1299569945 691 dbSNP
rs987824319 694 dbSNP
rs1489186874 697 dbSNP
rs1298828760 708 dbSNP
rs1286267628 713 dbSNP
rs1235626148 719 dbSNP
rs1209634995 724 dbSNP
rs954630565 726 dbSNP
rs1281784319 728 dbSNP
rs1288272203 731 dbSNP
rs1032105556 734 dbSNP
rs142360120 735 dbSNP
rs1265650781 743 dbSNP
rs1346289673 750 dbSNP
rs947054366 754 dbSNP
rs969213748 760 dbSNP
rs1194700662 762 dbSNP
rs1417539491 764 dbSNP
rs1259328870 782 dbSNP
rs1345270733 784 dbSNP
rs868248598 785 dbSNP
rs1457307960 787 dbSNP
rs1021678794 789 dbSNP
rs1369699448 801 dbSNP
rs1387102913 826 dbSNP
rs541838521 827 dbSNP
rs1376364433 830 dbSNP
rs1342710985 834 dbSNP
rs2181861 838 dbSNP
rs1311508450 848 dbSNP
rs894679809 859 dbSNP
rs553377814 860 dbSNP
rs1489791757 861 dbSNP
rs1214689438 864 dbSNP
rs754103966 884 dbSNP
rs934578487 884 dbSNP
rs1180157655 891 dbSNP
rs1408011192 901 dbSNP
rs1422706317 905 dbSNP
rs1162135729 910 dbSNP
rs376884903 926 dbSNP
rs1351536693 930 dbSNP
rs1461908229 931 dbSNP
rs139043081 932 dbSNP
rs1397886221 935 dbSNP
rs981292705 936 dbSNP
rs1415146463 937 dbSNP
rs1374386043 944 dbSNP
rs572282638 956 dbSNP
rs1166147609 961 dbSNP
rs969832089 964 dbSNP
rs1003556392 965 dbSNP
rs1323965208 966 dbSNP
rs1234439554 972 dbSNP
rs1263548569 973 dbSNP
rs1186987585 974 dbSNP
rs1490470956 986 dbSNP
rs887339126 991 dbSNP
rs1233066596 993 dbSNP
rs767357169 1000 dbSNP
rs564942390 1004 dbSNP
rs1415339907 1010 dbSNP
rs577613334 1012 dbSNP
rs1169903216 1013 dbSNP
rs1421457341 1023 dbSNP
rs1306477239 1024 dbSNP
rs1270295478 1027 dbSNP
rs1047858830 1044 dbSNP
rs963373886 1046 dbSNP
rs545277587 1052 dbSNP
rs559164497 1058 dbSNP
rs1301091548 1066 dbSNP
rs775305427 1068 dbSNP
rs756225894 1072 dbSNP
rs1415882669 1081 dbSNP
rs1037449444 1097 dbSNP
rs943110871 1101 dbSNP
rs1316637273 1107 dbSNP
rs1290904771 1108 dbSNP
rs910410751 1109 dbSNP
rs1243749503 1110 dbSNP
rs1311183854 1111 dbSNP
rs674903 1113 dbSNP
rs1270277442 1114 dbSNP
rs569752281 1116 dbSNP
rs1233108508 1125 dbSNP
rs767834766 1133 dbSNP
rs548294106 1135 dbSNP
rs1448830313 1136 dbSNP
rs1353951554 1145 dbSNP
rs977825724 1149 dbSNP
rs968745888 1152 dbSNP
rs1424207278 1153 dbSNP
rs1021627335 1165 dbSNP
rs1326937042 1170 dbSNP
rs535862206 1175 dbSNP
rs1424309766 1181 dbSNP
rs1435384363 1190 dbSNP
rs991599312 1197 dbSNP
rs370833044 1200 dbSNP
rs565630009 1203 dbSNP
rs547082226 1210 dbSNP
rs1217884640 1211 dbSNP
rs1036282256 1220 dbSNP
rs1011318387 1221 dbSNP
rs1415494752 1224 dbSNP
rs1348237839 1228 dbSNP
rs1003008801 1234 dbSNP
rs115676317 1235 dbSNP
rs1226167260 1244 dbSNP
rs1324309360 1245 dbSNP
rs1325194840 1246 dbSNP
rs1405902331 1248 dbSNP
rs1365402894 1250 dbSNP
rs1025937938 1259 dbSNP
rs368344946 1260 dbSNP
rs898865609 1267 dbSNP
rs1193845800 1270 dbSNP
rs1200012074 1274 dbSNP
rs377645335 1283 dbSNP
rs1037312509 1285 dbSNP
rs1476905730 1288 dbSNP
rs934608553 1294 dbSNP
rs1397112755 1303 dbSNP
rs943138683 1304 dbSNP
rs928579004 1313 dbSNP
rs1459462791 1318 dbSNP
rs888835158 1328 dbSNP
rs1052039146 1340 dbSNP
rs1358738427 1341 dbSNP
rs1213451711 1366 dbSNP
rs1046023670 1369 dbSNP
rs1320353061 1374 dbSNP
rs933127493 1383 dbSNP
rs1315288073 1385 dbSNP
rs924436677 1394 dbSNP
rs1349852585 1395 dbSNP
rs1434762539 1395 dbSNP
rs575941331 1401 dbSNP
rs1371206887 1412 dbSNP
rs1238978494 1413 dbSNP
rs915729535 1417 dbSNP
rs1352241349 1428 dbSNP
rs1277833138 1432 dbSNP
rs542789269 1439 dbSNP
rs947271994 1445 dbSNP
rs1223476015 1450 dbSNP
rs909237642 1452 dbSNP
rs1178284324 1453 dbSNP
rs1471182652 1462 dbSNP
rs1159291984 1463 dbSNP
rs1413693189 1476 dbSNP
rs1459825539 1476 dbSNP
rs983477932 1477 dbSNP
rs146406678 1481 dbSNP
rs1418102422 1482 dbSNP
rs1445512759 1484 dbSNP
rs549550925 1500 dbSNP
rs1337202407 1508 dbSNP
rs1432200495 1509 dbSNP
rs1239131343 1523 dbSNP
rs1283150971 1540 dbSNP
rs1354095849 1543 dbSNP
rs998147771 1556 dbSNP
rs964904687 1558 dbSNP
rs991460534 1563 dbSNP
rs1196571448 1565 dbSNP
rs1248686275 1576 dbSNP
rs958786150 1598 dbSNP
rs1439840908 1603 dbSNP
rs1182547757 1625 dbSNP
rs1011371296 1629 dbSNP
rs892885415 1635 dbSNP
rs1167763522 1639 dbSNP
rs1035738648 1640 dbSNP
rs1031806284 1646 dbSNP
rs1239302447 1648 dbSNP
rs998536465 1652 dbSNP
rs1487794373 1654 dbSNP
rs1391623798 1657 dbSNP
rs981931660 1662 dbSNP
rs951613982 1665 dbSNP
rs531434605 1676 dbSNP
rs1416144834 1677 dbSNP
rs1293799411 1679 dbSNP
rs563440963 1680 dbSNP
rs1316526958 1681 dbSNP
rs1284231972 1703 dbSNP
rs1216559188 1707 dbSNP
rs1242390442 1710 dbSNP
rs1252873317 1711 dbSNP
rs1341656618 1713 dbSNP
rs1377668907 1722 dbSNP
rs1255495078 1726 dbSNP
rs536525791 1728 dbSNP
rs1190196885 1739 dbSNP
rs1258822013 1741 dbSNP
rs1477813630 1747 dbSNP
rs776500852 1748 dbSNP
rs1375144175 1750 dbSNP
rs374260896 1758 dbSNP
rs1171619861 1767 dbSNP
rs1293878223 1767 dbSNP
rs898729659 1768 dbSNP
rs1452837084 1770 dbSNP
rs1399664343 1773 dbSNP
rs768184032 1785 dbSNP
rs1007144552 1796 dbSNP
rs1436037489 1801 dbSNP
rs1313021966 1805 dbSNP
rs542347307 1809 dbSNP
rs941162250 1815 dbSNP
rs1297407876 1818 dbSNP
rs1051559338 1825 dbSNP
rs1419941150 1833 dbSNP
rs1255592319 1845 dbSNP
rs909300729 1848 dbSNP
rs1213092866 1853 dbSNP
rs61798775 1855 dbSNP
rs1393885804 1857 dbSNP
rs1191237788 1858 dbSNP
rs1488210596 1859 dbSNP
rs1203926973 1861 dbSNP
rs933056785 1867 dbSNP
rs1264541778 1868 dbSNP
rs1429453664 1884 dbSNP
rs1198684721 1892 dbSNP
rs983914014 1902 dbSNP
rs903045712 1905 dbSNP
rs1455320178 1907 dbSNP
rs929341368 1930 dbSNP
rs1359383968 1932 dbSNP
rs1417735058 1942 dbSNP
rs1290532325 1944 dbSNP
rs182589216 1946 dbSNP
rs559651068 1947 dbSNP
rs1386001816 1951 dbSNP
rs1298996941 1955 dbSNP
rs777656783 1958 dbSNP
rs1431893431 1971 dbSNP
rs1236772704 1973 dbSNP
rs1304204021 1975 dbSNP
rs923246717 1978 dbSNP
rs746490387 1988 dbSNP
rs541087253 1989 dbSNP
rs577577608 1997 dbSNP
rs1017824113 1998 dbSNP
rs1209559362 1999 dbSNP
rs559326743 2002 dbSNP
rs990317257 2008 dbSNP
rs573681147 2012 dbSNP
rs928621101 2024 dbSNP
rs142236347 2028 dbSNP
rs1416754344 2034 dbSNP
rs771606883 2036 dbSNP
rs1031430892 2038 dbSNP
rs1457356444 2047 dbSNP
rs998985254 2048 dbSNP
rs918782741 2050 dbSNP
rs1396451419 2052 dbSNP
rs1443314744 2053 dbSNP
rs974181917 2058 dbSNP
rs1326793322 2063 dbSNP
rs962938611 2067 dbSNP
rs1279643536 2068 dbSNP
rs1167419839 2073 dbSNP
rs1231225702 2076 dbSNP
rs1313847892 2080 dbSNP
rs1018439630 2081 dbSNP
rs1309259140 2089 dbSNP
rs1301974290 2099 dbSNP
rs746307744 2101 dbSNP
rs1381423216 2108 dbSNP
rs906899386 2110 dbSNP
rs1338073136 2118 dbSNP
rs953107407 2120 dbSNP
rs1030397173 2125 dbSNP
rs1024385172 2130 dbSNP
rs1012826512 2135 dbSNP
rs1237180181 2145 dbSNP
rs779146514 2150 dbSNP
rs1379583141 2155 dbSNP
rs536660423 2164 dbSNP
rs997298171 2166 dbSNP
rs757581631 2168 dbSNP
rs1038217643 2170 dbSNP
rs1250616551 2173 dbSNP
rs1423133654 2175 dbSNP
rs941211393 2181 dbSNP
rs1419988819 2183 dbSNP
rs886919247 2186 dbSNP
rs902907590 2201 dbSNP
rs1047830837 2204 dbSNP
rs1041581630 2222 dbSNP
rs55928780 2256 dbSNP
rs778396735 2257 dbSNP
rs116047756 2262 dbSNP
rs1374496161 2269 dbSNP
rs1171173467 2274 dbSNP
rs574310798 2279 dbSNP
rs1395578064 2293 dbSNP
rs554061266 2294 dbSNP
rs943310019 2296 dbSNP
rs374647432 2301 dbSNP
rs191938395 2303 dbSNP
rs910812856 2309 dbSNP
rs369122271 2311 dbSNP
rs1428447850 2315 dbSNP
rs1251333774 2329 dbSNP
rs1482630394 2331 dbSNP
rs957577004 2339 dbSNP
rs1261436043 2341 dbSNP
rs928678772 2341 dbSNP
rs1196329266 2342 dbSNP
rs1046123065 2347 dbSNP
rs1192584368 2349 dbSNP
rs930091120 2350 dbSNP
rs1417170696 2356 dbSNP
rs1019090492 2367 dbSNP
rs148359685 2371 dbSNP
rs1484308285 2373 dbSNP
rs372502549 2374 dbSNP
rs962887791 2378 dbSNP
rs1357847087 2392 dbSNP
rs1415939980 2393 dbSNP
rs911380178 2400 dbSNP
rs1360339708 2401 dbSNP
rs547337195 2405 dbSNP
rs777574403 2413 dbSNP
rs765543440 2416 dbSNP
rs1279803587 2417 dbSNP
rs111567527 2430 dbSNP
rs538283614 2431 dbSNP
rs1485936787 2443 dbSNP
rs571189910 2444 dbSNP
rs1331857969 2451 dbSNP
rs1397433594 2452 dbSNP
rs1240339245 2453 dbSNP
rs1476255274 2455 dbSNP
rs1402214586 2461 dbSNP
rs185905913 2465 dbSNP
rs1297138010 2466 dbSNP
rs1454003679 2468 dbSNP
rs1465521433 2473 dbSNP
rs1377384591 2475 dbSNP
rs1435830628 2491 dbSNP
rs369177339 2494 dbSNP
rs1020086191 2496 dbSNP
rs181378094 2501 dbSNP
rs755361633 2502 dbSNP
rs561093476 2504 dbSNP
rs893006484 2509 dbSNP
rs1480627620 2513 dbSNP
rs143330337 2515 dbSNP
rs1369707205 2517 dbSNP
rs1001478782 2522 dbSNP
rs907087355 2523 dbSNP
rs1045736745 2526 dbSNP
rs530179752 2527 dbSNP
rs897157747 2528 dbSNP
rs1038448779 2531 dbSNP
rs1282064819 2531 dbSNP
rs941435490 2538 dbSNP
rs559607657 2539 dbSNP
rs375707680 2545 dbSNP
rs1245914837 2550 dbSNP
rs1192007562 2552 dbSNP
rs1456368570 2553 dbSNP
rs1454738949 2554 dbSNP
rs541420308 2557 dbSNP
rs985568271 2558 dbSNP
rs1319349189 2560 dbSNP
rs1394237767 2566 dbSNP
rs1439228694 2569 dbSNP
rs934272591 2572 dbSNP
rs922807010 2573 dbSNP
rs1440813686 2581 dbSNP
rs978366406 2584 dbSNP
rs967482923 2593 dbSNP
rs532578564 2611 dbSNP
rs868754079 2612 dbSNP
rs1054733071 2615 dbSNP
rs1215375403 2617 dbSNP
rs565574571 2622 dbSNP
rs61798774 2625 dbSNP
rs576812132 2626 dbSNP
rs555117852 2627 dbSNP
rs534099122 2628 dbSNP
rs571510254 2630 dbSNP
rs1159631968 2635 dbSNP
rs1417828745 2638 dbSNP
rs1024681053 2642 dbSNP
rs994087827 2646 dbSNP
rs572093639 2647 dbSNP
rs1038314905 2648 dbSNP
rs1390462989 2649 dbSNP
rs924845557 2650 dbSNP
rs1181134277 2651 dbSNP
rs941467619 2652 dbSNP
rs977997140 2665 dbSNP
rs1240117670 2667 dbSNP
rs889838453 2671 dbSNP
rs551420218 2673 dbSNP
rs1468004209 2679 dbSNP
rs1273585479 2680 dbSNP
rs917011131 2684 dbSNP
rs1195468376 2685 dbSNP
rs1271210030 2686 dbSNP
rs61798773 2687 dbSNP
rs991176630 2695 dbSNP
rs958389195 2703 dbSNP
rs1190426801 2704 dbSNP
rs1016541437 2709 dbSNP
rs553615035 2710 dbSNP
rs1356579315 2711 dbSNP
rs188635640 2712 dbSNP
rs1237304554 2728 dbSNP
rs1373480993 2732 dbSNP
rs1378396078 2733 dbSNP
rs1028643399 2734 dbSNP
rs1325618493 2741 dbSNP
rs1309355148 2742 dbSNP
rs751780934 2743 dbSNP
rs1268637185 2746 dbSNP
rs976689200 2747 dbSNP
rs1448113676 2749 dbSNP
rs1331055187 2750 dbSNP
rs951371354 2752 dbSNP
rs1203198790 2753 dbSNP
rs1321961433 2753 dbSNP
rs75367953 2754 dbSNP
rs77484697 2756 dbSNP
rs1213666549 2768 dbSNP
rs34588950 2772 dbSNP
rs1191568670 2773 dbSNP
rs1374421322 2773 dbSNP
rs1428255117 2773 dbSNP
rs397790583 2773 dbSNP
rs768816039 2773 dbSNP
rs1392750550 2774 dbSNP
rs1436098192 2776 dbSNP
rs570953541 2776 dbSNP
rs1391717275 2782 dbSNP
rs1049932539 2793 dbSNP
rs934193364 2794 dbSNP
rs998433945 2807 dbSNP
rs1328351008 2810 dbSNP
rs1229448382 2812 dbSNP
rs555746421 2814 dbSNP
rs1345784541 2818 dbSNP
rs1382207968 2833 dbSNP
rs1159352892 2835 dbSNP
rs149607228 2836 dbSNP
rs1276232062 2837 dbSNP
rs1244954498 2845 dbSNP
rs495163 2855 dbSNP
rs889157452 2861 dbSNP
rs549126981 2863 dbSNP
rs1260789415 2872 dbSNP
rs1392925827 2874 dbSNP
rs935979331 2878 dbSNP
rs138225059 2881 dbSNP
rs1355445152 2882 dbSNP
rs368766482 2884 dbSNP
rs1385427616 2887 dbSNP
rs1232988943 2890 dbSNP
rs1325435051 2890 dbSNP
rs950283061 2892 dbSNP
rs1443177843 2893 dbSNP
rs763513011 2894 dbSNP
rs762585449 2895 dbSNP
rs979871835 2899 dbSNP
rs1263065888 2900 dbSNP
rs183864499 2917 dbSNP
rs1330202428 2918 dbSNP
rs971670557 2923 dbSNP
rs1213530254 2926 dbSNP
rs1250736371 2927 dbSNP
rs1024127758 2929 dbSNP
rs909591368 2932 dbSNP
rs1249250416 2937 dbSNP
rs984194091 2938 dbSNP
rs994514635 2939 dbSNP
rs951044660 2940 dbSNP
rs547958054 2941 dbSNP
rs1162599667 2944 dbSNP
rs1392484515 2946 dbSNP
rs976670960 2964 dbSNP
rs965228741 2981 dbSNP
rs1372671898 2987 dbSNP
rs1362748324 2990 dbSNP
rs532661972 3003 dbSNP
rs1005474630 3020 dbSNP
rs1018105170 3021 dbSNP
rs1271661253 3022 dbSNP
rs181229794 3024 dbSNP
rs1050303736 3038 dbSNP
rs998269619 3039 dbSNP
rs150416782 3055 dbSNP
rs543861214 3056 dbSNP
rs945625604 3059 dbSNP
rs1414049121 3066 dbSNP
rs1000619580 3083 dbSNP
rs1174188572 3086 dbSNP
rs1252436038 3087 dbSNP
rs1474848425 3093 dbSNP
rs915465407 3102 dbSNP
rs1478315737 3110 dbSNP
rs1419787435 3116 dbSNP
rs1422599816 3135 dbSNP
rs903161874 3144 dbSNP
rs1460516094 3146 dbSNP
rs1042385991 3147 dbSNP
rs1309948560 3149 dbSNP
rs531999482 3151 dbSNP
rs114710913 3153 dbSNP
rs1291771835 3154 dbSNP
rs535943758 3166 dbSNP
rs980286651 3169 dbSNP
rs971150255 3170 dbSNP
rs917087015 3171 dbSNP
rs1305468591 3175 dbSNP
rs972562744 3176 dbSNP
rs549384736 3183 dbSNP
rs1208811197 3211 dbSNP
rs529929441 3214 dbSNP
rs1485281494 3215 dbSNP
rs1005417453 3230 dbSNP
rs572600110 3236 dbSNP
rs1259578978 3238 dbSNP
rs1483451415 3244 dbSNP
rs937470809 3252 dbSNP
rs755161043 3258 dbSNP
rs758632229 3258 dbSNP
rs1028307502 3267 dbSNP
rs1221398367 3269 dbSNP
rs983857282 3271 dbSNP
rs929647720 3274 dbSNP
rs561199122 3281 dbSNP
rs375141158 3287 dbSNP
rs1217230888 3294 dbSNP
rs977100907 3295 dbSNP
rs1230201465 3298 dbSNP
rs1359349086 3298 dbSNP
rs553825240 3302 dbSNP
rs965288806 3303 dbSNP
rs372018456 3305 dbSNP
rs1231526930 3312 dbSNP
rs1299098357 3319 dbSNP
rs985300362 3322 dbSNP
rs1042960887 3332 dbSNP
rs1214723455 3338 dbSNP
rs1240169456 3338 dbSNP
rs1484985415 3351 dbSNP
rs544661455 3353 dbSNP
rs1248928689 3354 dbSNP
rs189578638 3364 dbSNP
rs367947309 3375 dbSNP
rs377545229 3379 dbSNP
rs1427802113 3385 dbSNP
rs1415551840 3387 dbSNP
rs555709527 3389 dbSNP
rs71668489 3390 dbSNP
rs11461688 3391 dbSNP
rs72510740 3392 dbSNP
rs1478718083 3393 dbSNP
rs1014498754 3396 dbSNP
rs938229940 3400 dbSNP
rs537462409 3402 dbSNP
rs115488738 3403 dbSNP
rs1471624645 3418 dbSNP
rs1238654129 3431 dbSNP
rs1282119571 3444 dbSNP
rs1318476505 3445 dbSNP
rs1209200669 3472 dbSNP
rs1268996596 3479 dbSNP
rs555400952 3483 dbSNP
rs1468217397 3485 dbSNP
rs184348327 3493 dbSNP
rs1044043230 3501 dbSNP
rs41288385 3513 dbSNP
rs888597045 3517 dbSNP
rs551605446 3528 dbSNP
rs1258059512 3542 dbSNP
rs1459143410 3545 dbSNP
rs1160384061 3546 dbSNP
rs1393189759 3549 dbSNP
rs1459573418 3549 dbSNP
rs1197135461 3550 dbSNP
rs627125 3551 dbSNP
rs1331154685 3554 dbSNP
rs1279233912 3555 dbSNP
rs1277703925 3557 dbSNP
rs565953794 3558 dbSNP
rs1296919921 3564 dbSNP
rs1228723219 3568 dbSNP
rs571785977 3575 dbSNP
rs1334394358 3579 dbSNP
rs961229282 3581 dbSNP
rs550185285 3582 dbSNP
rs918279503 3585 dbSNP
rs1452247819 3586 dbSNP
rs1203986976 3587 dbSNP
rs976449829 3590 dbSNP
rs1377271730 3593 dbSNP
rs761627222 3594 dbSNP
rs1417617824 3597 dbSNP
rs1286004767 3598 dbSNP
rs1474456681 3617 dbSNP
rs1164605240 3618 dbSNP
rs1391090037 3619 dbSNP
rs943653563 3622 dbSNP
rs1448897709 3627 dbSNP
rs866597524 3632 dbSNP
rs1329296917 3633 dbSNP
rs1292397169 3635 dbSNP
rs754149137 3644 dbSNP
rs1246772806 3649 dbSNP
rs1286162641 3650 dbSNP
rs531638257 3657 dbSNP
rs1400708377 3659 dbSNP
rs911156669 3661 dbSNP
rs985352666 3665 dbSNP
rs953964491 3672 dbSNP
rs1028756638 3682 dbSNP
rs781249636 3686 dbSNP
rs1206462551 3687 dbSNP
rs957881769 3688 dbSNP
rs1441049774 3690 dbSNP
rs1190127345 3695 dbSNP
rs1163837576 3696 dbSNP
rs1165613405 3703 dbSNP
rs1474882160 3703 dbSNP
rs1391507120 3709 dbSNP
rs561625243 3723 dbSNP
rs1403223568 3724 dbSNP
rs1415562151 3725 dbSNP
rs998164906 3728 dbSNP
rs1397499863 3733 dbSNP
rs1334567858 3743 dbSNP
rs1341251696 3753 dbSNP
rs193259702 3757 dbSNP
rs1438604664 3763 dbSNP
rs1344365913 3768 dbSNP
rs1235847107 3779 dbSNP
rs1280233545 3786 dbSNP
rs765293138 3787 dbSNP
rs1459500087 3788 dbSNP
rs1202476824 3790 dbSNP
rs1252197431 3791 dbSNP
rs1221355222 3792 dbSNP
rs1020748639 3794 dbSNP
rs528000465 3795 dbSNP
rs1446018091 3797 dbSNP
rs1186258235 3798 dbSNP
rs1249550694 3799 dbSNP
rs1021079765 3802 dbSNP
rs560264274 3805 dbSNP
rs545216098 3806 dbSNP
rs1383938785 3808 dbSNP
rs1246786026 3814 dbSNP
rs1032492053 3821 dbSNP
rs577283050 3827 dbSNP
rs888639463 3846 dbSNP
rs1048545959 3847 dbSNP
rs562275872 3856 dbSNP
rs905415062 3857 dbSNP
rs1302776078 3858 dbSNP
rs1044461321 3859 dbSNP
rs896913388 3861 dbSNP
rs188579003 3870 dbSNP
rs558908190 3873 dbSNP
rs1257149594 3875 dbSNP
rs1040788613 3876 dbSNP
rs943705756 3878 dbSNP
rs1269562825 3880 dbSNP
rs1434118031 3882 dbSNP
rs1351248702 3883 dbSNP
rs910873365 3893 dbSNP
rs1164970533 3894 dbSNP
rs1192415773 3911 dbSNP
rs1264679456 3920 dbSNP
rs895468086 3927 dbSNP
rs1434445648 3929 dbSNP
rs1036771531 3930 dbSNP
rs1161123901 3932 dbSNP
rs1391027157 3935 dbSNP
rs925148454 3937 dbSNP
rs1325250790 3941 dbSNP
rs760232494 3942 dbSNP
rs573601920 3949 dbSNP
rs1388635878 3951 dbSNP
rs370081706 3961 dbSNP
rs74459121 3962 dbSNP
rs367715386 3967 dbSNP
rs555626106 3970 dbSNP
rs932570779 3971 dbSNP
rs1290629364 3972 dbSNP
rs1442061153 3979 dbSNP
rs1251916249 3982 dbSNP
rs1329360933 3983 dbSNP
rs774972590 3986 dbSNP
rs192010457 3991 dbSNP
rs1248833761 4017 dbSNP
rs1223418722 4021 dbSNP
rs965439991 4028 dbSNP
rs1009482593 4036 dbSNP
rs187463567 4036 dbSNP
rs1283946001 4037 dbSNP
rs182775747 4039 dbSNP
rs958083762 4050 dbSNP
rs1184038395 4051 dbSNP
rs1317443469 4052 dbSNP
rs1474786957 4057 dbSNP
rs1032524533 4058 dbSNP
rs1217422470 4060 dbSNP
rs1348424780 4066 dbSNP
rs1459499077 4092 dbSNP
rs147019695 4097 dbSNP
rs905445587 4107 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucUCCGUCCAAGGACCUAGUa 5'
            || |:||    ||||||| 
Target 5' --AGACGGG----UGGAUCAc 3'
1 - 15
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000355754.6 | 3UTR | AGACGGGUGGAUCACGAGGUCAGGAGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.601 1.5e-2 0.435 6.9e-2 13 Click to see details
GSE28544 Breast cancer 0.421 2.0e-2 0.375 3.5e-2 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.342 4.7e-2 0.213 1.5e-1 25 Click to see details
GSE19350 CNS germ cell tumors 0.502 4.8e-2 0.357 1.3e-1 12 Click to see details
GSE38226 Liver fibrosis -0.289 1.0e-1 -0.246 1.4e-1 21 Click to see details
GSE32688 Pancreatic cancer -0.202 1.3e-1 -0.119 2.6e-1 32 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.167 2.1e-1 0.222 1.4e-1 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.13 2.8e-1 0.000 5.0e-1 23 Click to see details
GSE17306 Multiple myeloma 0.077 3.0e-1 0.107 2.3e-1 49 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.121 3.1e-1 -0.150 2.6e-1 20 Click to see details
GSE14794 Lymphoblastoid cells -0.05 3.2e-1 -0.033 3.8e-1 90 Click to see details
GSE21849 B cell lymphoma 0.083 3.3e-1 0.190 1.6e-1 29 Click to see details
GSE19783 ER- ER- breast cancer 0.047 3.4e-1 0.089 2.2e-1 79 Click to see details
GSE27834 Pluripotent stem cells 0.073 3.9e-1 0.012 4.8e-1 16 Click to see details
GSE21687 Ependynoma primary tumors -0.018 4.4e-1 -0.068 3.0e-1 64 Click to see details
GSE19783 ER+ ER+ breast cancer 0.021 4.6e-1 -0.053 4.1e-1 20 Click to see details
GSE26953 Aortic valvular endothelial cells -0.013 4.8e-1 -0.045 4.2e-1 24 Click to see details
GSE19536 Breast cancer 0.005 4.8e-1 -0.004 4.8e-1 100 Click to see details
GSE19536 Breast cancer 0.005 4.8e-1 -0.004 4.8e-1 100 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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