pre-miRNA Information
pre-miRNA hsa-mir-6501   
Genomic Coordinates chr21: 33550662 - 33550728
Description Homo sapiens miR-6501 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6501-5p
Sequence 3| AGUUGCCAGGGCUGCCUUUGGU |24
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
1055619 20 ClinVar
COSM5974214 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs756127353 5 dbSNP
rs764400023 6 dbSNP
rs753967693 8 dbSNP
rs1283296362 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PLEKHS1   
Synonyms C10orf81, HEL185, bA211N11.2
Description pleckstrin homology domain containing S1
Transcript NM_024889   
Expression
Putative miRNA Targets on PLEKHS1
3'UTR of PLEKHS1
(miRNA target sites are highlighted)
>PLEKHS1|NM_024889|3'UTR
   1 AATTAAAGCTTACCATCGGCAGGATCCCAAATTCAGAGACATTCCATGCTGCATCCTGTATGTGTCCCTCAAAATGCCAA
  81 AGTGCTGCACCTTCTCAGCTGGATAAGCCTAGACTGAACAGAGCTCCCAAGAGGAGTCCGGCCATTAAAAAGAGCCAGCA
 161 GAAAGGAGCCAGGGAGTAACGCACCCCAGACCCATGGCAGCAGAACCAGGATGGAGCTGGGACTGTCCAGCTCTGCCCCC
 241 TGCTGCTGCCATGTGATAGGAGACAGTCGGCACCCCCCTCTGAATTTCTGCATCTGCATCTTAACAATGGGGATGACTAT
 321 CCCCTCTCTGGTTATTGTATCAGAGATGCTAAGAGGGTCATGTGGCATGATTGGAGAACCTGGGGGAATTGGAAGGCCTT
 401 ATTATCTCAGCTATTGTCCCAAACACCACAGACACAGATTGGGTCAGTCCTTCATGTAATACATGCTGTGTTCTGTGAGG
 481 ATGTGGTCCACACAATTCCTTCTTTGTTAAGGGACATACAGTTGCAAATACTCACTGCATGAAGGCAAGATTCCCAAGGG
 561 AGATGTGATAGCTGATCAGGCTTCCCAGACACCTCCTTCCCAAACACCTCCTTCCCAACACCTCCTTCCCCAACATCCTT
 641 CCCAACACCTCCTTCCCAACACCTCCTTCCCAAACACCTCCTTCCCAAACACCTCCTTCCCAACACCTCCTTCCCCAACA
 721 CCTCCTTCCCAAACACCTCTTTCCCAAACACCTCCTTCCCAGACACCTCCTTCCCAACACCTCCTTCCCAACACCTCCTT
 801 CCCAAACCCCTCTTTCCCAAACACCTCCTTCCCCAACACCTCCTTCCCAACACCTCCTTCCCCCTTCCCCAACACCTCCT
 881 TCCCCAACACCTCCTTCCCAACACCTCCTTCCCAAACCCCTCCTTCCCCAACATCCTTCCCAACACCTCCTTCCCAACAC
 961 CTCCTTCCCAAACACCTCCTTCCCAAACACCTCCTTCCCAACACCTCCTTCCCCAACACCTCCTTCCCAAACACCTCTTT
1041 CCCAAACACCTCCTTCCCAGACACCTCCTTCCCAACACCGCCTTCCCAACACCTCCTTCCCAAACCCCTCTTTCCCAAAC
1121 ACCTCCTTCCCCAACACCTCCTTCCCCAACACCTCCTTCCCAACACCTCCTTCCCCCTTCCCCAACAACTCCTTCCCCAA
1201 CACCTCCTTCCCAAACATCCCCTTCCCAAACACCTGCCTCTCTTCAACCCCACAGGCCAGAGTGCTGAGACAGAGTGGCC
1281 TTTTGGATTCAATAAGTATCTTGTTCTCTTAAAGACTCAGCAACGATTTTAGAAGTCGCAGCAGTTTTACATCACATGCA
1361 GCCAAGATCAGCTTGCTCTACAAGCAATAACAGAACTACTTAGCACTTCAAGGTTGAAAGTTCTTCACTAATGGATCCAT
1441 TGACTAATTGATCCTGGAAGGCCAAAGGAATAAAATTCTTTTATATAAATAGGAAAACAAAGGCAGAGAGCTAAAGCACT
1521 AATCAAATCGGGGGGTGTTAGAGCAAAAACAGGCTTCAGAAAGAGTATTTTACCATGCTTCACATGGAAAAAATCGAGCC
1601 CCGGAGCGATGAAAGGCATATTTTCTTTGTTTCTCCAAGTTTCATAACCGTTCAGTTGCAGAACCAAGAATCTAAAACCA
1681 GCTCTGGGAAACAAATGTCCAGATGCCAGCCTCATAGTTGAACTTGGATTTGAAAATACCTTCAGCACTTAGAAGAGACA
1761 TTCAAATACATTTCATTTCCTGTTACCCAGATTGTTCGGAAAGTATTAAAAATTTTTCATTTACATGCTGAAAAAAAAAA
1841 AAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugguuuccGUC-GGG-ACCGUUGa 5'
                  ||| ||| |||||:| 
Target 5' acgcacccCAGACCCATGGCAGCa 3'
179 - 202 138.00 -17.30
2
miRNA  3' ugGUUUCCGUCGGGACCGUUga 5'
            :|||  ||||:|||| ||  
Target 5' tcTAAAACCAGCTCTGGGAAac 3'
1671 - 1692 124.00 -19.70
3
miRNA  3' ugGUUUCCGUCGG--GACCGUuga 5'
            | |||  :|:|   |||||   
Target 5' tgCTAAGAGGGTCATGTGGCAtga 3'
347 - 370 110.00 -11.62
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM4607457 10 COSMIC
COSM427089 16 COSMIC
COSM201844 18 COSMIC
COSM6750065 20 COSMIC
COSM427090 27 COSMIC
COSM7967007 27 COSMIC
COSM7088682 30 COSMIC
COSM8299138 37 COSMIC
COSM1703060 46 COSMIC
COSM8158442 46 COSMIC
COSM9456516 46 COSMIC
COSM6065107 47 COSMIC
COSM6287226 49 COSMIC
COSM3751540 51 COSMIC
COSM7384586 52 COSMIC
COSM914956 52 COSMIC
COSM8357347 60 COSMIC
COSM6128511 69 COSMIC
COSM7258322 75 COSMIC
COSM9010181 78 COSMIC
COSM5734521 79 COSMIC
COSM3367899 117 COSMIC
COSM4457511 127 COSMIC
COSM5418532 140 COSMIC
COSM914957 141 COSMIC
COSM2053735 143 COSMIC
COSM9057976 159 COSMIC
COSN26644882 215 COSMIC
COSN24775889 269 COSMIC
COSN15792136 278 COSMIC
COSN30129959 361 COSMIC
COSN1112692 411 COSMIC
COSN21988045 465 COSMIC
COSN8530064 503 COSMIC
COSN15652975 636 COSMIC
COSN20107560 644 COSMIC
COSN32063933 650 COSMIC
COSN20107561 658 COSMIC
COSN20092197 673 COSMIC
COSN20092198 674 COSMIC
COSN20092200 688 COSMIC
COSN28997923 692 COSMIC
COSN20092201 717 COSMIC
COSN20092202 721 COSMIC
COSN20092203 732 COSMIC
COSN20092205 741 COSMIC
COSN20092207 747 COSMIC
COSN20092209 753 COSMIC
COSN20092211 762 COSMIC
COSN20107562 763 COSMIC
COSN26303424 793 COSMIC
COSN15649585 813 COSMIC
COSN20092212 814 COSMIC
COSN20092213 820 COSMIC
COSN20092214 886 COSMIC
COSN15652323 958 COSMIC
COSN27337725 1054 COSMIC
COSN20107566 1111 COSMIC
COSN20092215 1122 COSMIC
COSN20107568 1126 COSMIC
COSN31778837 1133 COSMIC
COSN6475685 1133 COSMIC
COSN27329941 1148 COSMIC
COSN6475686 1156 COSMIC
COSN17925524 1170 COSMIC
COSN23427560 1189 COSMIC
COSN27286487 1189 COSMIC
COSN20092217 1199 COSMIC
COSN20092218 1204 COSMIC
COSN20092219 1206 COSMIC
COSN22775511 1331 COSMIC
COSN23141144 1485 COSMIC
COSN31960551 1531 COSMIC
COSN27964590 1673 COSMIC
COSN17294252 1912 COSMIC
COSN32062018 2640 COSMIC
COSN19367582 2649 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1329362277 6 dbSNP
rs761585859 14 dbSNP
rs1412629288 17 dbSNP
rs201435892 18 dbSNP
rs370338009 19 dbSNP
rs756368761 25 dbSNP
rs753377659 27 dbSNP
rs754577830 29 dbSNP
rs778701397 34 dbSNP
rs375920460 39 dbSNP
rs1484912076 40 dbSNP
rs1213420117 41 dbSNP
rs758082384 47 dbSNP
rs777933095 48 dbSNP
rs888870347 49 dbSNP
rs11196483 51 dbSNP
rs989936724 52 dbSNP
rs1169154935 60 dbSNP
rs771290195 62 dbSNP
rs777241261 70 dbSNP
rs371574088 71 dbSNP
rs769922226 78 dbSNP
rs1480999941 79 dbSNP
rs775563659 80 dbSNP
rs1316414139 81 dbSNP
rs768957651 85 dbSNP
rs1431513546 86 dbSNP
rs1303359263 95 dbSNP
rs1346306389 96 dbSNP
rs367689615 99 dbSNP
rs147568090 100 dbSNP
rs1345362724 115 dbSNP
rs1026669631 117 dbSNP
rs1259158408 123 dbSNP
rs1448244742 124 dbSNP
rs573461694 125 dbSNP
rs753896107 127 dbSNP
rs1252340239 129 dbSNP
rs1290750232 138 dbSNP
rs200866926 140 dbSNP
rs764781444 141 dbSNP
rs1366217867 142 dbSNP
rs1377997852 144 dbSNP
rs757947091 145 dbSNP
rs1157072305 146 dbSNP
rs1291309561 150 dbSNP
rs912140861 153 dbSNP
rs555109084 154 dbSNP
rs1457874781 160 dbSNP
rs1319534570 162 dbSNP
rs1350078958 162 dbSNP
rs944396348 167 dbSNP
rs751844912 169 dbSNP
rs1443745124 170 dbSNP
rs757677616 174 dbSNP
rs868038632 175 dbSNP
rs573578485 176 dbSNP
rs1237271688 177 dbSNP
rs1414000246 178 dbSNP
rs781657801 181 dbSNP
rs543929872 182 dbSNP
rs1208859598 183 dbSNP
rs1271969459 185 dbSNP
rs201438085 187 dbSNP
rs780073494 190 dbSNP
rs548008350 192 dbSNP
rs1418320498 193 dbSNP
rs1179360107 195 dbSNP
rs768739293 198 dbSNP
rs774676383 201 dbSNP
rs577283183 207 dbSNP
rs1418237692 210 dbSNP
rs1392381676 215 dbSNP
rs1463026645 220 dbSNP
rs1410031886 221 dbSNP
rs1022278547 222 dbSNP
rs930424797 226 dbSNP
rs1390066568 227 dbSNP
rs1309573005 229 dbSNP
rs1299869565 236 dbSNP
rs966661977 236 dbSNP
rs745758152 240 dbSNP
rs1472025803 243 dbSNP
rs1220434430 246 dbSNP
rs1191559560 254 dbSNP
rs1049262120 258 dbSNP
rs894330447 259 dbSNP
rs141913965 261 dbSNP
rs79439030 263 dbSNP
rs1321009661 266 dbSNP
rs1465391187 269 dbSNP
rs368264846 270 dbSNP
rs911390681 271 dbSNP
rs542907778 272 dbSNP
rs1250245417 273 dbSNP
rs1030967659 274 dbSNP
rs898893500 277 dbSNP
rs540711791 283 dbSNP
rs3750900 292 dbSNP
rs1011016778 293 dbSNP
rs1022788847 299 dbSNP
rs111479559 299 dbSNP
rs1225674628 305 dbSNP
rs1366873695 309 dbSNP
rs1405737917 309 dbSNP
rs1395221296 310 dbSNP
rs906447484 320 dbSNP
rs1304448374 323 dbSNP
rs1466500903 325 dbSNP
rs1376093966 326 dbSNP
rs1295674519 332 dbSNP
rs953606446 334 dbSNP
rs1427952933 348 dbSNP
rs1219198583 349 dbSNP
rs3750899 350 dbSNP
rs1019086277 362 dbSNP
rs1342324320 363 dbSNP
rs1184052140 372 dbSNP
rs894966545 375 dbSNP
rs1229988038 381 dbSNP
rs1010967060 387 dbSNP
rs966292548 388 dbSNP
rs1271773847 390 dbSNP
rs1022352119 396 dbSNP
rs1482538424 397 dbSNP
rs972282599 402 dbSNP
rs918942177 404 dbSNP
rs1314671859 406 dbSNP
rs1415290037 428 dbSNP
rs1349753852 432 dbSNP
rs1248287528 435 dbSNP
rs1306129239 442 dbSNP
rs1408012860 443 dbSNP
rs951781617 444 dbSNP
rs984582671 456 dbSNP
rs1398731450 461 dbSNP
rs193266357 463 dbSNP
rs1457643150 466 dbSNP
rs1367060419 468 dbSNP
rs1167396596 480 dbSNP
rs978504022 484 dbSNP
rs567448349 485 dbSNP
rs1411803598 486 dbSNP
rs1180657720 492 dbSNP
rs1029624034 503 dbSNP
rs72837404 521 dbSNP
rs1390726460 532 dbSNP
rs12218072 541 dbSNP
rs934590892 553 dbSNP
rs1389577554 559 dbSNP
rs184131827 560 dbSNP
rs534271164 566 dbSNP
rs1325739249 569 dbSNP
rs1328238896 574 dbSNP
rs892497751 576 dbSNP
rs1337595091 581 dbSNP
rs941528718 586 dbSNP
rs974210361 587 dbSNP
rs12782657 600 dbSNP
rs1388790790 602 dbSNP
rs1328194939 603 dbSNP
rs1436185592 608 dbSNP
rs1289753561 612 dbSNP
rs1462236140 614 dbSNP
rs1388454184 616 dbSNP
rs1367977870 617 dbSNP
rs1433475266 621 dbSNP
rs1294833682 623 dbSNP
rs1340810560 625 dbSNP
rs1228603369 628 dbSNP
rs773257445 629 dbSNP
rs1291568695 631 dbSNP
rs1319493435 632 dbSNP
rs1220564330 634 dbSNP
rs1491271538 635 dbSNP
rs1197501237 636 dbSNP
rs1268951399 636 dbSNP
rs1430974565 636 dbSNP
rs1483839957 636 dbSNP
rs372603508 636 dbSNP
rs1466218286 637 dbSNP
rs1186570867 638 dbSNP
rs1171658146 639 dbSNP
rs1247535223 639 dbSNP
rs1464268626 641 dbSNP
rs199649640 641 dbSNP
rs1210486020 645 dbSNP
rs1165279246 648 dbSNP
rs1411914539 650 dbSNP
rs1415065867 650 dbSNP
rs1232554447 655 dbSNP
rs1274211983 655 dbSNP
rs1404916526 656 dbSNP
rs1305899161 658 dbSNP
rs142169841 658 dbSNP
rs760690813 658 dbSNP
rs1441993725 659 dbSNP
rs1160409449 662 dbSNP
rs113002529 664 dbSNP
rs1319013188 665 dbSNP
rs1391264014 667 dbSNP
rs1456152898 672 dbSNP
rs371412235 673 dbSNP
rs866635839 674 dbSNP
rs374849927 677 dbSNP
rs1396429710 680 dbSNP
rs1285384632 682 dbSNP
rs1376561443 685 dbSNP
rs1227339100 687 dbSNP
rs879096982 688 dbSNP
rs1190220987 692 dbSNP
rs1245926608 692 dbSNP
rs1330907297 692 dbSNP
rs1206814407 694 dbSNP
rs1267408573 697 dbSNP
rs1198730206 702 dbSNP
rs1342948834 703 dbSNP
rs1282627218 704 dbSNP
rs1235261526 706 dbSNP
rs1364679263 707 dbSNP
rs1433256012 709 dbSNP
rs1202724860 717 dbSNP
rs777743289 717 dbSNP
rs746970211 721 dbSNP
rs1442874588 723 dbSNP
rs1189711362 724 dbSNP
rs1394859414 726 dbSNP
rs1235766826 729 dbSNP
rs796165759 732 dbSNP
rs1472603701 735 dbSNP
rs1183129933 736 dbSNP
rs1428572161 737 dbSNP
rs368324243 741 dbSNP
rs920352541 744 dbSNP
rs878980605 747 dbSNP
rs1236745633 748 dbSNP
rs1403548893 752 dbSNP
rs796789461 753 dbSNP
rs1335651566 759 dbSNP
rs1356910992 762 dbSNP
rs1413829035 763 dbSNP
rs372532320 763 dbSNP
rs1341561341 766 dbSNP
rs1216616026 768 dbSNP
rs1340480003 771 dbSNP
rs56297551 772 dbSNP
rs1284022404 774 dbSNP
rs1446418493 777 dbSNP
rs1357867824 778 dbSNP
rs1288579824 782 dbSNP
rs151219233 783 dbSNP
rs1330462313 784 dbSNP
rs1410235083 785 dbSNP
rs770929613 787 dbSNP
rs1161203155 794 dbSNP
rs1226360107 794 dbSNP
rs1418415661 797 dbSNP
rs1287413679 799 dbSNP
rs1482767409 801 dbSNP
rs1231307198 803 dbSNP
rs1206862678 804 dbSNP
rs1438645985 804 dbSNP
rs1248851394 805 dbSNP
rs1226911459 806 dbSNP
rs1337418821 806 dbSNP
rs1294443715 807 dbSNP
rs1345667693 809 dbSNP
rs201500247 810 dbSNP
rs749237042 810 dbSNP
rs1280827848 812 dbSNP
rs1437539846 814 dbSNP
rs1348891569 819 dbSNP
rs1321191125 820 dbSNP
rs1462759139 821 dbSNP
rs1395029522 824 dbSNP
rs1158317610 826 dbSNP
rs1441914388 831 dbSNP
rs1206211470 832 dbSNP
rs1405846154 832 dbSNP
rs1182999992 835 dbSNP
rs1470564937 839 dbSNP
rs1212132443 846 dbSNP
rs1246283622 846 dbSNP
rs1470100081 851 dbSNP
rs1274254572 853 dbSNP
rs1315614367 854 dbSNP
rs1254261102 856 dbSNP
rs1309814789 856 dbSNP
rs112156772 857 dbSNP
rs1272712311 861 dbSNP
rs1319688255 863 dbSNP
rs1371432113 863 dbSNP
rs1442723353 863 dbSNP
rs1453154854 876 dbSNP
rs1159755772 878 dbSNP
rs1346841827 878 dbSNP
rs1401287459 883 dbSNP
rs1424626147 884 dbSNP
rs1171168624 886 dbSNP
rs1394008522 891 dbSNP
rs189766045 892 dbSNP
rs1175197728 893 dbSNP
rs1422524929 897 dbSNP
rs1433545157 902 dbSNP
rs181275850 903 dbSNP
rs1262945013 904 dbSNP
rs1217216346 905 dbSNP
rs1308049887 906 dbSNP
rs1277635425 907 dbSNP
rs112840429 908 dbSNP
rs1372027074 914 dbSNP
rs1235998072 915 dbSNP
rs1407571058 924 dbSNP
rs1327961594 930 dbSNP
rs1348103885 934 dbSNP
rs929033656 941 dbSNP
rs1031438012 943 dbSNP
rs1363816233 944 dbSNP
rs1289368207 953 dbSNP
rs563212267 953 dbSNP
rs199809594 956 dbSNP
rs759161030 956 dbSNP
rs1331450560 960 dbSNP
rs1235419043 961 dbSNP
rs1272991085 963 dbSNP
rs1344147916 965 dbSNP
rs531577260 970 dbSNP
rs1393885163 971 dbSNP
rs1436686247 975 dbSNP
rs1276818622 976 dbSNP
rs1168204491 982 dbSNP
rs1482212005 983 dbSNP
rs1427106300 985 dbSNP
rs1264367240 986 dbSNP
rs1187591294 987 dbSNP
rs1483230870 990 dbSNP
rs567183066 991 dbSNP
rs1212341161 993 dbSNP
rs1485719235 994 dbSNP
rs368356294 995 dbSNP
rs551752327 997 dbSNP
rs1309020033 1000 dbSNP
rs1197439194 1001 dbSNP
rs1246648783 1002 dbSNP
rs1296081414 1002 dbSNP
rs1227565310 1003 dbSNP
rs1450566477 1007 dbSNP
rs1168709584 1011 dbSNP
rs1416627788 1013 dbSNP
rs1376211912 1015 dbSNP
rs1391425874 1015 dbSNP
rs1307643481 1017 dbSNP
rs1427475916 1018 dbSNP
rs1460702321 1019 dbSNP
rs1375108479 1022 dbSNP
rs1171514464 1024 dbSNP
rs1390554733 1030 dbSNP
rs1200602623 1031 dbSNP
rs1166960452 1033 dbSNP
rs1485709183 1037 dbSNP
rs1329329206 1039 dbSNP
rs1337430330 1045 dbSNP
rs1388311703 1046 dbSNP
rs1481390444 1049 dbSNP
rs56003522 1050 dbSNP
rs1251557539 1054 dbSNP
rs1220483420 1060 dbSNP
rs1332419568 1061 dbSNP
rs1295049914 1065 dbSNP
rs1321262300 1067 dbSNP
rs555709610 1067 dbSNP
rs1356144224 1075 dbSNP
rs577319973 1080 dbSNP
rs1435668540 1081 dbSNP
rs1299980250 1089 dbSNP
rs1340104026 1092 dbSNP
rs1392821920 1095 dbSNP
rs1227049461 1099 dbSNP
rs1189449243 1104 dbSNP
rs1392319287 1105 dbSNP
rs140442536 1108 dbSNP
rs1475845212 1108 dbSNP
rs1178990002 1110 dbSNP
rs1358662314 1110 dbSNP
rs1208430886 1112 dbSNP
rs1250710202 1112 dbSNP
rs1190338339 1117 dbSNP
rs1185030625 1118 dbSNP
rs1438685836 1118 dbSNP
rs1214211652 1122 dbSNP
rs1258913994 1125 dbSNP
rs1328337850 1125 dbSNP
rs1236897265 1127 dbSNP
rs1047892311 1133 dbSNP
rs867971926 1133 dbSNP
rs1465762537 1135 dbSNP
rs1191031326 1136 dbSNP
rs1249387874 1137 dbSNP
rs1447120680 1142 dbSNP
rs527768838 1144 dbSNP
rs1369203802 1145 dbSNP
rs1328299934 1148 dbSNP
rs1462317488 1149 dbSNP
rs1384806375 1150 dbSNP
rs1368692225 1152 dbSNP
rs544947235 1153 dbSNP
rs185639306 1154 dbSNP
rs1371900210 1156 dbSNP
rs1363936543 1159 dbSNP
rs1457744900 1159 dbSNP
rs148942959 1159 dbSNP
rs1254526366 1160 dbSNP
rs201504164 1162 dbSNP
rs777982272 1162 dbSNP
rs1363184989 1167 dbSNP
rs1193975018 1169 dbSNP
rs113564456 1170 dbSNP
rs547535236 1176 dbSNP
rs1342514555 1178 dbSNP
rs370868355 1183 dbSNP
rs1206891560 1188 dbSNP
rs111639513 1189 dbSNP
rs1261433611 1195 dbSNP
rs553722032 1198 dbSNP
rs1339009854 1199 dbSNP
rs1022923293 1219 dbSNP
rs572186549 1222 dbSNP
rs1043856809 1230 dbSNP
rs188883380 1232 dbSNP
rs970123111 1233 dbSNP
rs141304627 1241 dbSNP
rs1010705481 1248 dbSNP
rs531609642 1250 dbSNP
rs1485789764 1251 dbSNP
rs1384473754 1260 dbSNP
rs966178449 1261 dbSNP
rs181634166 1268 dbSNP
rs1385014097 1270 dbSNP
rs993772104 1274 dbSNP
rs1026552700 1280 dbSNP
rs951777821 1285 dbSNP
rs1173881182 1294 dbSNP
rs1425243409 1295 dbSNP
rs984860329 1299 dbSNP
rs747067405 1301 dbSNP
rs372929910 1303 dbSNP
rs955383633 1307 dbSNP
rs1007279504 1311 dbSNP
rs1018551244 1312 dbSNP
rs1235373246 1313 dbSNP
rs533506016 1319 dbSNP
rs1386361740 1325 dbSNP
rs1452915834 1326 dbSNP
rs769716916 1336 dbSNP
rs1303520587 1338 dbSNP
rs764739965 1339 dbSNP
rs1412307947 1345 dbSNP
rs1376813090 1349 dbSNP
rs1313093797 1351 dbSNP
rs928495548 1352 dbSNP
rs934482921 1360 dbSNP
rs1292899819 1364 dbSNP
rs1417084331 1367 dbSNP
rs1351280155 1372 dbSNP
rs1475628183 1374 dbSNP
rs11196484 1381 dbSNP
rs914472389 1382 dbSNP
rs1474260050 1388 dbSNP
rs1259759703 1390 dbSNP
rs1316866286 1394 dbSNP
rs947287501 1397 dbSNP
rs755464448 1412 dbSNP
rs1271172682 1417 dbSNP
rs927641327 1433 dbSNP
rs571943418 1434 dbSNP
rs1340505448 1439 dbSNP
rs1044126124 1453 dbSNP
rs1293207342 1454 dbSNP
rs1256120613 1455 dbSNP
rs939046571 1464 dbSNP
rs889095591 1479 dbSNP
rs1440875349 1480 dbSNP
rs1352348337 1481 dbSNP
rs374047183 1487 dbSNP
rs1208357716 1491 dbSNP
rs767942016 1507 dbSNP
rs1040462404 1516 dbSNP
rs1162676002 1517 dbSNP
rs902039998 1528 dbSNP
rs1256381213 1530 dbSNP
rs1483139009 1531 dbSNP
rs368435217 1533 dbSNP
rs993655098 1543 dbSNP
rs1184111369 1545 dbSNP
rs1026605042 1556 dbSNP
rs1409422840 1569 dbSNP
rs1469703849 1574 dbSNP
rs2419875 1577 dbSNP
rs1176661329 1581 dbSNP
rs1006440147 1583 dbSNP
rs1184331741 1586 dbSNP
rs1379511180 1586 dbSNP
rs1458481849 1588 dbSNP
rs527870380 1596 dbSNP
rs549275722 1597 dbSNP
rs981186929 1599 dbSNP
rs1043578473 1603 dbSNP
rs138816127 1604 dbSNP
rs11196485 1608 dbSNP
rs1323600247 1609 dbSNP
rs11196486 1611 dbSNP
rs570898355 1617 dbSNP
rs1395050262 1619 dbSNP
rs1158294115 1622 dbSNP
rs538386485 1635 dbSNP
rs1400188300 1639 dbSNP
rs73361874 1644 dbSNP
rs1160485580 1645 dbSNP
rs1440588869 1650 dbSNP
rs1373018261 1660 dbSNP
rs1192087063 1663 dbSNP
rs1220382583 1675 dbSNP
rs1470112429 1680 dbSNP
rs74874608 1683 dbSNP
rs1314595171 1693 dbSNP
rs1285794191 1694 dbSNP
rs910568612 1695 dbSNP
rs1018249865 1702 dbSNP
rs1231443282 1704 dbSNP
rs943336159 1706 dbSNP
rs1278937432 1712 dbSNP
rs1371543217 1715 dbSNP
rs542831989 1730 dbSNP
rs1040514510 1736 dbSNP
rs1369773218 1751 dbSNP
rs1288203056 1755 dbSNP
rs1428603945 1764 dbSNP
rs1342456382 1766 dbSNP
rs778997270 1772 dbSNP
rs2419874 1787 dbSNP
rs995752688 1797 dbSNP
rs1394637769 1798 dbSNP
rs772014301 1799 dbSNP
rs564943635 1802 dbSNP
rs141917249 1808 dbSNP
rs1048369020 1812 dbSNP
rs1426376930 1813 dbSNP
rs775455230 1813 dbSNP
rs1191756367 1814 dbSNP
rs2419873 1826 dbSNP
rs1244359700 1827 dbSNP
rs1216630857 1833 dbSNP
rs981997000 1835 dbSNP
rs927750409 1836 dbSNP
rs960703800 1842 dbSNP
rs1452458305 1845 dbSNP
rs1312533325 1847 dbSNP
rs1006901732 1853 dbSNP
rs1212616765 1866 dbSNP
rs1363925950 1869 dbSNP
rs768504839 1883 dbSNP
rs185954531 1884 dbSNP
rs578055566 1894 dbSNP
rs946669889 1900 dbSNP
rs1354381398 1905 dbSNP
rs1359999661 1908 dbSNP
rs1002491689 1910 dbSNP
rs1427125198 1921 dbSNP
rs879111148 1928 dbSNP
rs4431982 1930 dbSNP
rs923830504 1932 dbSNP
rs988493468 1935 dbSNP
rs1483347811 1946 dbSNP
rs560651029 1948 dbSNP
rs1366151110 1949 dbSNP
rs1051338860 1951 dbSNP
rs1021896874 1960 dbSNP
rs1309111544 1964 dbSNP
rs143841199 1970 dbSNP
rs1232656497 1972 dbSNP
rs11196487 1978 dbSNP
rs549556280 1983 dbSNP
rs1039758793 1984 dbSNP
rs11196488 1988 dbSNP
rs1230247388 1990 dbSNP
rs1297828050 1997 dbSNP
rs995779457 1999 dbSNP
rs1025916671 2000 dbSNP
rs887331939 2002 dbSNP
rs1325058325 2006 dbSNP
rs1461411874 2008 dbSNP
rs148166408 2010 dbSNP
rs1306493445 2013 dbSNP
rs976082134 2017 dbSNP
rs1036229923 2022 dbSNP
rs1266937707 2028 dbSNP
rs1467121402 2029 dbSNP
rs1192900047 2030 dbSNP
rs923232643 2036 dbSNP
rs1212870627 2037 dbSNP
rs1332532420 2038 dbSNP
rs1274994008 2039 dbSNP
rs1248800854 2053 dbSNP
rs534850833 2056 dbSNP
rs1184801045 2059 dbSNP
rs990522768 2064 dbSNP
rs1419076336 2065 dbSNP
rs1306540342 2068 dbSNP
rs1023287249 2074 dbSNP
rs570947544 2077 dbSNP
rs386747797 2081 dbSNP
rs967670183 2081 dbSNP
rs11196489 2082 dbSNP
rs11196490 2083 dbSNP
rs1207686363 2089 dbSNP
rs11196491 2090 dbSNP
rs986688903 2097 dbSNP
rs1047782781 2112 dbSNP
rs887966025 2114 dbSNP
rs112167659 2116 dbSNP
rs1045082743 2117 dbSNP
rs1457959795 2119 dbSNP
rs1362763960 2123 dbSNP
rs906128731 2129 dbSNP
rs1156456299 2135 dbSNP
rs1003046409 2145 dbSNP
rs1056740573 2161 dbSNP
rs1420462948 2163 dbSNP
rs1238436310 2164 dbSNP
rs1192717857 2166 dbSNP
rs1466975947 2168 dbSNP
rs1436660360 2181 dbSNP
rs1267857282 2185 dbSNP
rs1254811801 2186 dbSNP
rs141961898 2193 dbSNP
rs1357112365 2197 dbSNP
rs554845696 2198 dbSNP
rs1237007986 2213 dbSNP
rs1010427425 2214 dbSNP
rs1228512976 2216 dbSNP
rs1021364089 2220 dbSNP
rs1310278854 2223 dbSNP
rs1314660246 2228 dbSNP
rs756546609 2229 dbSNP
rs1387901267 2231 dbSNP
rs1384912302 2236 dbSNP
rs10885502 2247 dbSNP
rs1018484297 2262 dbSNP
rs372999030 2268 dbSNP
rs931318284 2270 dbSNP
rs10885503 2273 dbSNP
rs976635376 2284 dbSNP
rs1452329696 2294 dbSNP
rs1003535263 2301 dbSNP
rs1241537880 2301 dbSNP
rs1035897768 2303 dbSNP
rs1259600222 2304 dbSNP
rs1011974581 2306 dbSNP
rs530251009 2306 dbSNP
rs1287003347 2311 dbSNP
rs1023354395 2312 dbSNP
rs558875479 2313 dbSNP
rs1276934449 2324 dbSNP
rs967737271 2325 dbSNP
rs1326301387 2330 dbSNP
rs979122657 2332 dbSNP
rs1401306390 2333 dbSNP
rs150663105 2336 dbSNP
rs1311873318 2341 dbSNP
rs1432519146 2343 dbSNP
rs372626206 2343 dbSNP
rs1475076300 2351 dbSNP
rs1172891819 2354 dbSNP
rs1160290194 2355 dbSNP
rs750879953 2358 dbSNP
rs1371202153 2360 dbSNP
rs983976368 2361 dbSNP
rs1478835010 2364 dbSNP
rs545405206 2367 dbSNP
rs942071814 2371 dbSNP
rs1344063272 2372 dbSNP
rs1281013562 2377 dbSNP
rs370847579 2378 dbSNP
rs1339219162 2380 dbSNP
rs572509982 2381 dbSNP
rs927438761 2387 dbSNP
rs758630714 2391 dbSNP
rs542742876 2393 dbSNP
rs938957196 2400 dbSNP
rs1057299501 2401 dbSNP
rs1412404750 2414 dbSNP
rs1341832102 2419 dbSNP
rs7086994 2422 dbSNP
rs139851777 2423 dbSNP
rs1331162266 2424 dbSNP
rs1172695421 2425 dbSNP
rs10885504 2427 dbSNP
rs565261813 2432 dbSNP
rs758464781 2433 dbSNP
rs1007015956 2443 dbSNP
rs779961178 2444 dbSNP
rs532651399 2450 dbSNP
rs746880760 2452 dbSNP
rs965183232 2457 dbSNP
rs547379798 2462 dbSNP
rs143527752 2464 dbSNP
rs1013046522 2471 dbSNP
rs768595374 2472 dbSNP
rs1043167535 2473 dbSNP
rs950817356 2478 dbSNP
rs983474391 2485 dbSNP
rs1001013816 2488 dbSNP
rs1485428821 2496 dbSNP
rs1273118875 2501 dbSNP
rs909172356 2507 dbSNP
rs536394477 2514 dbSNP
rs1183383512 2531 dbSNP
rs963508253 2541 dbSNP
rs1333653773 2553 dbSNP
rs572025118 2557 dbSNP
rs1158494089 2558 dbSNP
rs1007868724 2563 dbSNP
rs367693535 2564 dbSNP
rs3206207 2565 dbSNP
rs938842633 2569 dbSNP
rs963925179 2575 dbSNP
rs1403668041 2579 dbSNP
rs3206208 2582 dbSNP
rs1416116757 2583 dbSNP
rs1314113647 2585 dbSNP
rs1164021894 2591 dbSNP
rs1469779353 2598 dbSNP
rs1373274755 2603 dbSNP
rs1236603288 2610 dbSNP
rs368367449 2611 dbSNP
rs975249304 2613 dbSNP
rs1057351893 2614 dbSNP
rs1252916261 2616 dbSNP
rs1220079040 2624 dbSNP
rs1308457029 2627 dbSNP
rs3206209 2628 dbSNP
rs1289925291 2633 dbSNP
rs1452810762 2633 dbSNP
rs760723872 2633 dbSNP
rs199773424 2637 dbSNP
rs1323786522 2638 dbSNP
rs538878125 2638 dbSNP
rs1278868230 2639 dbSNP
rs56896156 2640 dbSNP
rs7086925 2641 dbSNP
rs1278232546 2642 dbSNP
rs946249697 2642 dbSNP
rs908564979 2643 dbSNP
rs1400202862 2646 dbSNP
rs1378624800 2647 dbSNP
rs1160747640 2648 dbSNP
rs77600887 2649 dbSNP
rs78417531 2650 dbSNP
rs938699983 2651 dbSNP
rs1057098138 2654 dbSNP
rs537258662 2655 dbSNP
rs904156286 2656 dbSNP
rs1254502733 2657 dbSNP
rs1436421761 2658 dbSNP
rs1487061334 2661 dbSNP
rs1287707141 2671 dbSNP
rs1216954044 2679 dbSNP
rs1346844421 2680 dbSNP
rs942482154 2683 dbSNP
rs1065209 2685 dbSNP
rs1269520738 2687 dbSNP
rs901034184 2689 dbSNP
rs1358765601 2693 dbSNP
rs1300248568 2699 dbSNP
rs1174993532 2707 dbSNP
rs1392693313 2709 dbSNP
rs1375096137 2710 dbSNP
rs1174330165 2713 dbSNP
rs147155533 2714 dbSNP
rs904685389 2727 dbSNP
rs534572302 2733 dbSNP
rs887040301 2737 dbSNP
rs769458174 2738 dbSNP
rs1016286299 2739 dbSNP
rs1253893441 2745 dbSNP
rs1327861173 2746 dbSNP
rs191847675 2754 dbSNP
rs1272185859 2755 dbSNP
rs1331640748 2761 dbSNP
rs1216774014 2762 dbSNP
rs1442983626 2771 dbSNP
rs1280128158 2773 dbSNP
rs554176414 2779 dbSNP
rs1400705648 2786 dbSNP
rs1354987426 2796 dbSNP
rs1301394014 2810 dbSNP
rs963691954 2811 dbSNP
rs1370334466 2813 dbSNP
rs1467889705 2814 dbSNP
rs1360163151 2817 dbSNP
rs1170327190 2819 dbSNP
rs892183698 2824 dbSNP
rs1426441437 2825 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' uugcacucCAGCCUGGGCAACa 3'
13 - 34
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugGUUUCCGU-CGGGACCGUuga 5'
            |||:  || ||| | |||   
Target 5' gcCAAGAUCAUGCCAUUGCAcuc 3'
4 - 26
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760631. RNA binding protein: AGO2. Condition:AGO-CLIP-22RV1_B ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000354462.3 | 3UTR | AAGAUCAUGCCAUUGCACUCCAGCCUGGGCAACAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000354462.3 | 3UTR | UGAGCCAAGAUCAUGCCAUUGCACUCCAGCCUGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
167 hsa-miR-6501-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT156859 FAM126B family with sequence similarity 126 member B 2 2
MIRT173355 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT369102 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT442037 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT442829 AZIN1 antizyme inhibitor 1 2 2
MIRT443729 CCND2 cyclin D2 2 2
MIRT453771 NUCB1 nucleobindin 1 2 10
MIRT453875 IFRD1 interferon related developmental regulator 1 2 12
MIRT454229 OSBPL10 oxysterol binding protein like 10 2 11
MIRT458829 RPUSD2 RNA pseudouridylate synthase domain containing 2 2 2
MIRT459898 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 10
MIRT464162 VMP1 vacuole membrane protein 1 2 15
MIRT495411 SMAD2 SMAD family member 2 2 2
MIRT496906 TRIM56 tripartite motif containing 56 2 2
MIRT498653 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 6
MIRT498706 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499308 ZNF485 zinc finger protein 485 2 6
MIRT499707 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499755 CIRH1A UTP4, small subunit processome component 2 6
MIRT499827 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT503691 MAVS mitochondrial antiviral signaling protein 2 2
MIRT512418 LAYN layilin 2 4
MIRT516232 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT522554 MCAM melanoma cell adhesion molecule 2 4
MIRT523760 FBXO27 F-box protein 27 2 4
MIRT525107 PRKD2 protein kinase D2 2 2
MIRT525919 KIAA0391 KIAA0391 2 2
MIRT527246 COMMD6 COMM domain containing 6 2 2
MIRT527564 ADCY7 adenylate cyclase 7 2 2
MIRT528764 CD1D CD1d molecule 2 2
MIRT529362 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529464 ZNF546 zinc finger protein 546 2 2
MIRT530676 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531635 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT531909 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT532172 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT534234 SLC25A16 solute carrier family 25 member 16 2 4
MIRT534561 RRAGD Ras related GTP binding D 2 2
MIRT534971 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536738 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT538544 CELF1 CUGBP Elav-like family member 1 2 2
MIRT540462 ZNF71 zinc finger protein 71 2 2
MIRT540554 PPIC peptidylprolyl isomerase C 2 2
MIRT543593 KIAA1549 KIAA1549 2 2
MIRT543963 RNF20 ring finger protein 20 2 2
MIRT544047 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544670 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT550665 TRAF1 TNF receptor associated factor 1 2 2
MIRT558540 CSNK1G3 casein kinase 1 gamma 3 2 4
MIRT574917 Vmp1 vacuole membrane protein 1 2 9
MIRT575298 Osbpl10 oxysterol binding protein-like 10 2 7
MIRT607960 SNX22 sorting nexin 22 2 2
MIRT610649 TIPRL TOR signaling pathway regulator 2 8
MIRT615899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT617438 CCS copper chaperone for superoxide dismutase 2 2
MIRT617510 C5orf45 MRN complex interacting protein 2 2
MIRT617548 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT620565 WBSCR27 methyltransferase like 27 2 2
MIRT623166 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624161 DGKE diacylglycerol kinase epsilon 2 2
MIRT626090 MKLN1 muskelin 1 2 2
MIRT627010 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT627073 SF3A1 splicing factor 3a subunit 1 2 2
MIRT627136 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT627340 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT627436 TAS2R5 taste 2 receptor member 5 2 2
MIRT628273 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT629091 F2RL1 F2R like trypsin receptor 1 2 4
MIRT629282 UNC13A unc-13 homolog A 2 2
MIRT630122 ARHGEF5 Rho guanine nucleotide exchange factor 5 2 2
MIRT630247 SMTNL2 smoothelin like 2 2 2
MIRT631260 CENPM centromere protein M 2 2
MIRT631336 CD300E CD300e molecule 2 2
MIRT631399 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT632593 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT632991 DUSP18 dual specificity phosphatase 18 2 2
MIRT633079 CXorf21 chromosome X open reading frame 21 2 2
MIRT634223 TMEM132B transmembrane protein 132B 2 2
MIRT635046 MYH11 myosin heavy chain 11 2 2
MIRT636444 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT636649 CDK4 cyclin dependent kinase 4 2 2
MIRT637129 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT637282 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT637527 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT637783 OLA1 Obg like ATPase 1 2 2
MIRT637920 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT638238 SLC1A5 solute carrier family 1 member 5 2 2
MIRT638444 PLXDC2 plexin domain containing 2 2 2
MIRT639765 GPR45 G protein-coupled receptor 45 2 2
MIRT640437 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643006 ZNF829 zinc finger protein 829 2 2
MIRT644233 SLC35E3 solute carrier family 35 member E3 2 2
MIRT644661 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644957 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT645086 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT645256 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT645861 GBP6 guanylate binding protein family member 6 2 2
MIRT645987 ACP6 acid phosphatase 6, lysophosphatidic 2 2
MIRT646502 FAM217B family with sequence similarity 217 member B 2 2
MIRT646811 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647706 NFX1 nuclear transcription factor, X-box binding 1 2 2
MIRT649657 TEP1 telomerase associated protein 1 2 2
MIRT650550 YIPF4 Yip1 domain family member 4 2 2
MIRT650785 GSR glutathione-disulfide reductase 2 2
MIRT651461 XIAP X-linked inhibitor of apoptosis 2 2
MIRT652098 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT654117 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658901 DPY19L4 dpy-19 like 4 2 2
MIRT659370 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT662537 MTAP methylthioadenosine phosphorylase 2 2
MIRT662617 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT663491 IYD iodotyrosine deiodinase 2 2
MIRT663899 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT664552 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT664582 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT664953 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT665193 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 2
MIRT665446 WDR17 WD repeat domain 17 2 2
MIRT665894 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT666480 SBNO1 strawberry notch homolog 1 2 2
MIRT666514 RNF170 ring finger protein 170 2 2
MIRT666692 RBM23 RNA binding motif protein 23 2 2
MIRT666791 PSMD1 proteasome 26S subunit, non-ATPase 1 2 2
MIRT667453 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT667553 LRAT lecithin retinol acyltransferase 2 4
MIRT667744 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT668080 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT668114 GK5 glycerol kinase 5 (putative) 2 2
MIRT668501 ESYT2 extended synaptotagmin 2 2 2
MIRT668942 CNKSR3 CNKSR family member 3 2 2
MIRT670408 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671134 CD226 CD226 molecule 2 2
MIRT671919 PLEKHS1 pleckstrin homology domain containing S1 2 4
MIRT672287 GP2 glycoprotein 2 2 2
MIRT672427 POLR2D RNA polymerase II subunit D 2 2
MIRT672762 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672923 LRRC2 leucine rich repeat containing 2 2 2
MIRT673150 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673309 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT673560 PLA2G16 phospholipase A2 group XVI 2 2
MIRT673895 DCTN6 dynactin subunit 6 2 2
MIRT674513 PRR23A proline rich 23A 2 2
MIRT674614 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674747 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675693 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT675890 SNAP29 synaptosome associated protein 29 2 2
MIRT685271 KIAA1143 KIAA1143 2 2
MIRT686057 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT693886 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT695594 TMEM199 transmembrane protein 199 2 2
MIRT696592 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT698041 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT699907 RUNDC1 RUN domain containing 1 2 2
MIRT706608 CYB5B cytochrome b5 type B 2 2
MIRT706628 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706640 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT706676 COL13A1 collagen type XIII alpha 1 chain 2 2
MIRT706723 RFK riboflavin kinase 2 2
MIRT706857 MAFF MAF bZIP transcription factor F 2 2
MIRT706891 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT706958 FANCC Fanconi anemia complementation group C 2 2
MIRT706976 XPO5 exportin 5 2 2
MIRT707010 RRP36 ribosomal RNA processing 36 2 2
MIRT707028 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707068 MED29 mediator complex subunit 29 2 2
MIRT713253 ZFP30 ZFP30 zinc finger protein 2 2
MIRT719130 NR2F6 nuclear receptor subfamily 2 group F member 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6501-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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