pre-miRNA Information
pre-miRNA hsa-mir-4640   
Genomic Coordinates chr6: 30890883 - 30890972
Description Homo sapiens miR-4640 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4640-5p
Sequence 9| UGGGCCAGGGAGCAGCUGGUGGG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1392105945 7 dbSNP
rs939712790 9 dbSNP
rs762825841 15 dbSNP
rs71552023 20 dbSNP
rs1305909531 21 dbSNP
rs750017220 21 dbSNP
rs1375436057 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B32FZJ miR-4640 Safety Biomarker (SAF) Clinical/Experimental Data Expression lower Urine Quantitative polymerase chain reaction
Gene Information
Gene Symbol ATP6V0A2   
Synonyms A2, ARCL, ARCL2A, ATP6A2, ATP6N1D, J6B7, RTF, STV1, TJ6, TJ6M, TJ6S, VPH1, WSS
Description ATPase H+ transporting V0 subunit a2
Transcript NM_012463   
Expression
Putative miRNA Targets on ATP6V0A2
3'UTR of ATP6V0A2
(miRNA target sites are highlighted)
>ATP6V0A2|NM_012463|3'UTR
   1 TCATATTGCTGTAACCAACAAGCTTTCAGATTTATGGAGAATGACCATGTTATAGACTTTCACTTATGTCAGATTTATGA
  81 TAGGAAAAATTCCATCTTCATTACTGCCTTATGACATAGCCAAATAATTCTGTAAGATATACCTCTTCCTCATATGTTAA
 161 ATATTTTGTAAAGTTTACCAATTTGAGATATAAAAATTTCTTTTGGTTTTTTATGATGAGCAAATATAAGTTAATGCCAA
 241 ACGTTATGTTAAAGTTATTTTTTCAAATACAGGATTTGGGGAGAGAAGCCAATTTTGCATGGCTAGTTGAAAATGGTATT
 321 AGATACTTATTTCCTTTAAACTTTATTTAAAACAAACAACAGAGTTAATCTGTCACCTGAAGTTGCCAGATAATATTTTC
 401 CAACAGCTGAAGTAGGGATAGTTTTTTAAAAAATTTAATGATGGGTAATCAAAACATTCACATTTATTCTGCTGGATTTA
 481 AAAATATGTACTTTTTTTTTTTTTTTGAGATGAAGTCTTGCTGTGTCACGTAGGCTGGAGTGCAATGGCACGATCGTGTC
 561 TCATTGCAACTTCCGCCTCCTGGATTCAGGTGATTCTCCTGTCTCAGCCTCCCGAGTAACTGGGATTACAGGCATGCGCC
 641 ACCGTGACCAGCTAATTTTTTTGTATTTTTGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTTCTGAC
 721 CTCAAGTGATCCACCTGCCTCGGCCTCCCTAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCAAAATATGCAA
 801 ATATTTTTTATCCTGTGCTACCTAGAATTACAAGTAGAGGATTGTTTTTACAATTTTGTCTTGTTTTAGTAATTGGGGAC
 881 AATGGGATAAAATGACATACAACAAATGGTTATCCCACTTGTATATTTTTTTAAAGACTCTTATCCTGTTACCCTTACAT
 961 AAAACCAGTTATGATAATTGTATGTTTGGAAGATAAATTGTATGCTGAGCCTTAAAACCCAGTGTGACTGTAGAAGATAT
1041 AATGCGGACATGATTTGAATTTAGTGACAGCTTGGCTGATGTCACTGAACCAGAAGGGTTTATACTGAGTGAAGGAAAGG
1121 TAAAAAGTAGTATTTTGTATATTTTTGTAACAAAATATAAATGAAGATATTTTACCATGAAGAGATTGCACTTATCCTTG
1201 AGAACAGTCTAAATATAAATGAAGATATTTTACCATGAAGAGATTGCACTTATCCTTGAGAACAGTCTAATGATACTTTT
1281 TTTACTTTCAGACTGTTTCTAGCTAAAGTTCTGATAAAAGTATTGAGTTAATTTAAACTTTCAAACACTGTTTAGATCAG
1361 TTGAAAACTAATTCTTAATAGCCATTGTTTTATAATCTTTAGTTTAAATTCATCTGTTTGACATTTGGTTTTTTGTGAAC
1441 TTGAGTCAGTCCTATTGAACATTTTGACCTATATTCTTGCAAATTATGTTAATTTTTCATATTTTAGTTTGATTTTAGAC
1521 AATTATTTTCAAAAAGAAACCTGACTTTTTTTCACCTTCTTGACATTGTGAGTGATACACGTTAAAAGGCTATTTGCCCG
1601 CATCCTCCTCTATCCTGTTTCGAGGTAGAGAGCTTGGCACTTCTGTTACAAGCTGAGAGTCTGGAGGTGCTGAGTTTAAC
1681 GTGGCTGTGCAGCTGATTTCAAGGCATGAGCTGAACAGCGTTGACACAGCCGTGACTTACAATTAAACCCTTTCAATTAC
1761 AGTACAGATTCTGTGTGCTACTTGATGAGATGTTACCCAAGGCCAGTTTGGACTTACTGCTTTTTGTCCCTCATATTAAA
1841 TTATCAAATGATGCCGATGAAATGCTTGAAAATGATTCTGCTCTCAAAGTTATGCTTCCCTAGAAAGGTGTCATGTCGGG
1921 CACTTGTGTTGGGTGACTATGACATCCCAGCAGTGCTGGTCAGGTCTCAGAGTTGCTTTCACCTAGAGCTGATGCTTCCA
2001 CAAGGGGACATTTGTGTTACTTTGCTCCAGGGGTCTGTCATAAAAACAATGGTAACTACTTCATCCCTAGGAAGCCCAAG
2081 ACTTCAGGGCACTGTTAGCTGATTGGTAAATAAGGGACACGATATTCACGGGAATTGTTTACTGCTCCCCACTAGTAATT
2161 CTCATGGGGCCACTTTTTTAACTCTTTCTAATTAACACCTCTTCTCAGCATAGAGCAGAGGATGCAGTCATTTCTCTGTT
2241 GAAATCTATGTAGTATTTATGTAGAATGTCATTATATGAAAAGCGAATTCAGAATCCTAACTCTGGGAAAGCGCTCTCTG
2321 GAAATGTAGTTTGATAATAGTGTCTTATAGGGGCCACGGGAATTTGTTTCTCTATAAAGCGATGGGCTCCAGTGTCATGT
2401 TACCAGAGTTATCGCTCAGTTTTGTTTGTTAAGGCTTTTGCTAGAACCTATTATGTATCCAGTTTTTAAAACATACTTCA
2481 TTCCCTTGATAGCAGAGATCCAGAGCACAGATGGCAAGTTGTGTGGATGATACTGAATATGTTTATTTTCCTAAAGATAA
2561 ATGTCACGACACGACATTTCTCAGTTTTTATTTAGATGTTTATTACCATGTGTTAACAGAATCTTAAAACCCAAGGGATT
2641 TCTTCAGTAAACTAGACTTTGATTCAACCTGCTGGGCTGGAGACTGTAATTGCCGTGGTCAGTTAAGGAGTGCAAAGGGT
2721 GTTCTGTCTGATAGGATCTGGGTGAGCCCTGCGGACTTTCCAGCAGCGAAAGGACTTGGAACTCCTCTTTCGCTGAATGC
2801 TGCTCTGTTTCTGGAATGGATATTTTATAACAACATTCTGGTGTCAGCATCCCCTCAGCAGTTGTTTATTTAAAAATTTT
2881 TTTATTTTTTTTGAGACAGTGTCTCACTCTGTCACCTAGGCTGAAGTGCAGTGGTGCAGTCTCGGCTCACTGCAACCTCT
2961 GCCTCCTGGGTTTAAGCAATTCTCCTGCCCTAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCACAGTGCCCGGCTA
3041 ATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTACC
3121 CACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCCTCTGCAGTTGTTTAATAAGGCACAG
3201 AATACCTGTAGCATAGGTCAGCCTTACGATGTCCATGAATTACATATTCAGACGTTTTAGAGCCTGATACATTTTGGAAA
3281 AGAAAAACAACTTCTACACCTATTCTACAGTCCGCATTTAAAACAATAAATTCCTCTATTAAAAACGTAAAGCCGGGTTT
3361 GCTTGCGTGCCACAGGGAATATATCCAGGAAGGTTATTATGAAGCTGTCAAATCAAGATGATGGGAATAAGGCAGTTTGA
3441 ACGAACAGTCTTCCCACAGTCAGGCCATTTTTGCTGATTTGGTTTAGAATTTTCAGAAATACTTAGTACACTCCACCTGT
3521 TCTTTGATGGGAATATCTAAGAAGGCTAGGTAGGTTCTTAGGGTTAGCCTGAGTCATCTAGGGGCTCAACTCCTTGTGAG
3601 GGGAAATGACAGTGAACAAGTTAGTACTTTGCTCCACAAATGCATGAAAGGACAAATTTGCATCTTCTATCAGTATTTAA
3681 CTTCCTTTTGCTAATGACAAATAAATATATCTATATTTTTAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gggUGGUCGACGAGGGACCGGGu 5'
             :||| | ||  |||||||| 
Target 5' tgaGCCA-CCGC-GCCTGGCCCt 3'
3156 - 3176 154.00 -27.00
2
miRNA  3' ggGUGGUCGACGAGGGACCGGgu 5'
            |||||  ||   |||||||  
Target 5' gcCACCA--TG---CCTGGCCaa 3'
774 - 791 138.00 -23.50
3
miRNA  3' ggGUGGU-CGACGAGG---GACCGGGu 5'
            ||||| |:||  ||   ||||:|: 
Target 5' ttCACCATGTTG-GCCAGGCTGGTCTc 3'
684 - 709 128.00 -22.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
307600 58 ClinVar
883192 64 ClinVar
21498 116 ClinVar
307601 192 ClinVar
307602 272 ClinVar
307603 435 ClinVar
307604 565 ClinVar
307605 575 ClinVar
883986 576 ClinVar
307606 578 ClinVar
883987 644 ClinVar
883988 707 ClinVar
307607 710 ClinVar
883989 743 ClinVar
307608 786 ClinVar
307609 999 ClinVar
880700 1065 ClinVar
880701 1123 ClinVar
307610 1129 ClinVar
307611 1206 ClinVar
307612 1253 ClinVar
307613 1455 ClinVar
307614 1600 ClinVar
307615 1601 ClinVar
882105 1621 ClinVar
882106 1646 ClinVar
307616 1681 ClinVar
307617 1682 ClinVar
307618 1694 ClinVar
883246 1732 ClinVar
307619 1800 ClinVar
883247 1804 ClinVar
307620 1829 ClinVar
883248 1838 ClinVar
883249 1951 ClinVar
307621 2040 ClinVar
307622 2086 ClinVar
884054 2091 ClinVar
307623 2127 ClinVar
307624 2162 ClinVar
307625 2183 ClinVar
307626 2199 ClinVar
884055 2330 ClinVar
307627 2343 ClinVar
307628 2354 ClinVar
884056 2358 ClinVar
307629 2455 ClinVar
307630 2486 ClinVar
880762 2619 ClinVar
307631 2647 ClinVar
880763 2711 ClinVar
880764 2760 ClinVar
880765 2772 ClinVar
880766 2783 ClinVar
307632 2834 ClinVar
880767 2876 ClinVar
882157 2877 ClinVar
307633 2878 ClinVar
882158 2930 ClinVar
307634 2982 ClinVar
307635 3001 ClinVar
307636 3043 ClinVar
307637 3160 ClinVar
307638 3167 ClinVar
882159 3168 ClinVar
307639 3228 ClinVar
307640 3236 ClinVar
882408 3263 ClinVar
307641 3270 ClinVar
882409 3358 ClinVar
882410 3369 ClinVar
307642 3426 ClinVar
307643 3506 ClinVar
307644 3554 ClinVar
307645 3604 ClinVar
884116 3655 ClinVar
307646 3666 ClinVar
884117 3685 ClinVar
884118 3708 ClinVar
COSN30490472 17 COSMIC
COSN30156863 94 COSMIC
COSN30156865 100 COSMIC
COSN19200845 228 COSMIC
COSN20219377 264 COSMIC
COSN22522937 669 COSMIC
COSN1560722 1368 COSMIC
COSN19031743 2542 COSMIC
COSN26430190 3254 COSMIC
COSN31960863 3672 COSMIC
rs117222175 2358 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1234905832 1 dbSNP
rs757855297 3 dbSNP
rs763682044 4 dbSNP
rs1353833981 7 dbSNP
rs1228145753 9 dbSNP
rs751169771 13 dbSNP
rs200014054 14 dbSNP
rs539626636 19 dbSNP
rs1257831784 24 dbSNP
rs558027144 28 dbSNP
rs371405262 37 dbSNP
rs779976674 42 dbSNP
rs1429480092 44 dbSNP
rs749361416 45 dbSNP
rs779053877 46 dbSNP
rs970230694 48 dbSNP
rs1434216466 49 dbSNP
rs980485261 50 dbSNP
rs1480373779 52 dbSNP
rs747772644 58 dbSNP
rs886049063 58 dbSNP
rs576086591 64 dbSNP
rs1206148367 88 dbSNP
rs1321782915 90 dbSNP
rs1034802557 101 dbSNP
rs1283047856 105 dbSNP
rs960633712 113 dbSNP
rs367543009 116 dbSNP
rs572553730 118 dbSNP
rs1335968868 121 dbSNP
rs1259573435 124 dbSNP
rs1389142237 133 dbSNP
rs999691129 143 dbSNP
rs1456219090 152 dbSNP
rs543159551 156 dbSNP
rs1197420561 169 dbSNP
rs1246830293 173 dbSNP
rs374235976 182 dbSNP
rs1019571586 183 dbSNP
rs150408179 192 dbSNP
rs1424823343 198 dbSNP
rs919159889 199 dbSNP
rs112791053 201 dbSNP
rs1179969418 204 dbSNP
rs1418530534 207 dbSNP
rs922199709 213 dbSNP
rs951692144 213 dbSNP
rs1460369574 222 dbSNP
rs930527076 227 dbSNP
rs984866544 231 dbSNP
rs541298619 243 dbSNP
rs1324258081 244 dbSNP
rs1262082523 258 dbSNP
rs1236454483 262 dbSNP
rs1351718745 271 dbSNP
rs886049064 272 dbSNP
rs1315140495 276 dbSNP
rs1454175835 278 dbSNP
rs1380467575 293 dbSNP
rs1438439285 304 dbSNP
rs910363358 307 dbSNP
rs573056725 323 dbSNP
rs943218775 326 dbSNP
rs1291729015 331 dbSNP
rs1382537905 339 dbSNP
rs1040847175 342 dbSNP
rs901952200 347 dbSNP
rs559597979 350 dbSNP
rs1386900197 358 dbSNP
rs1344866688 359 dbSNP
rs1453329999 361 dbSNP
rs1386171627 378 dbSNP
rs1219006239 382 dbSNP
rs370520714 383 dbSNP
rs533481774 394 dbSNP
rs1279900447 401 dbSNP
rs1315655560 405 dbSNP
rs1449047817 412 dbSNP
rs940468443 413 dbSNP
rs934658520 429 dbSNP
rs886049065 435 dbSNP
rs1292120245 436 dbSNP
rs928482948 440 dbSNP
rs540169655 452 dbSNP
rs1356688492 453 dbSNP
rs937172159 458 dbSNP
rs1289928500 463 dbSNP
rs138190279 466 dbSNP
rs1053161097 473 dbSNP
rs893152087 488 dbSNP
rs1020007023 491 dbSNP
rs1471319772 492 dbSNP
rs772770008 492 dbSNP
rs893063792 500 dbSNP
rs1452842653 508 dbSNP
rs1219936521 509 dbSNP
rs1246627510 520 dbSNP
rs1010874478 524 dbSNP
rs1384709819 527 dbSNP
rs1168935606 530 dbSNP
rs1011810507 531 dbSNP
rs1371915885 541 dbSNP
rs902596201 544 dbSNP
rs1490628315 545 dbSNP
rs1488942897 546 dbSNP
rs1196261385 548 dbSNP
rs1269110797 550 dbSNP
rs1224282254 552 dbSNP
rs1000042381 553 dbSNP
rs1023235010 556 dbSNP
rs1195946422 557 dbSNP
rs1268395279 564 dbSNP
rs886049066 565 dbSNP
rs1421992862 568 dbSNP
rs1019057071 570 dbSNP
rs1164055000 573 dbSNP
rs1285374814 574 dbSNP
rs112521789 575 dbSNP
rs996318859 576 dbSNP
rs577796265 578 dbSNP
rs549224893 581 dbSNP
rs1411781432 600 dbSNP
rs1164251156 601 dbSNP
rs567620278 614 dbSNP
rs1364850710 615 dbSNP
rs960521402 616 dbSNP
rs1431923641 621 dbSNP
rs1201056954 625 dbSNP
rs952402952 635 dbSNP
rs1299752183 638 dbSNP
rs768332596 639 dbSNP
rs984463173 642 dbSNP
rs1338180069 643 dbSNP
rs377386130 644 dbSNP
rs1284443416 647 dbSNP
rs1358103140 649 dbSNP
rs1197958759 656 dbSNP
rs1323917397 662 dbSNP
rs1025939692 667 dbSNP
rs1221527571 679 dbSNP
rs1367151367 687 dbSNP
rs370873465 689 dbSNP
rs201281979 698 dbSNP
rs907570798 700 dbSNP
rs1288578795 707 dbSNP
rs547048918 710 dbSNP
rs543568676 711 dbSNP
rs961801176 718 dbSNP
rs1409032209 722 dbSNP
rs565968382 728 dbSNP
rs910498929 733 dbSNP
rs1469654659 735 dbSNP
rs1423992024 742 dbSNP
rs964496583 743 dbSNP
rs1261396372 747 dbSNP
rs1230690925 751 dbSNP
rs761718203 754 dbSNP
rs1177856966 755 dbSNP
rs975983154 756 dbSNP
rs937121187 762 dbSNP
rs1055645553 766 dbSNP
rs772071993 769 dbSNP
rs1239425500 770 dbSNP
rs563268565 771 dbSNP
rs914485311 775 dbSNP
rs1181328771 779 dbSNP
rs947331947 783 dbSNP
rs146660715 786 dbSNP
rs1385591729 787 dbSNP
rs1420186696 789 dbSNP
rs529094546 794 dbSNP
rs1335369028 797 dbSNP
rs557940730 813 dbSNP
rs1358332498 814 dbSNP
rs1053616508 815 dbSNP
rs914546179 832 dbSNP
rs1399885654 834 dbSNP
rs773316463 836 dbSNP
rs1378167911 845 dbSNP
rs947395828 854 dbSNP
rs1044648264 864 dbSNP
rs1157510682 864 dbSNP
rs1444765494 865 dbSNP
rs1244858138 868 dbSNP
rs1341862888 874 dbSNP
rs1482774285 878 dbSNP
rs765270434 879 dbSNP
rs901938259 896 dbSNP
rs996266001 903 dbSNP
rs1029149473 912 dbSNP
rs759391221 918 dbSNP
rs1361724137 922 dbSNP
rs906152754 923 dbSNP
rs1445426158 947 dbSNP
rs1003445100 956 dbSNP
rs760624764 964 dbSNP
rs1057265361 965 dbSNP
rs1228264576 973 dbSNP
rs897317308 981 dbSNP
rs569762516 982 dbSNP
rs1313675185 983 dbSNP
rs537117325 994 dbSNP
rs374608361 998 dbSNP
rs12298446 999 dbSNP
rs1386576006 1008 dbSNP
rs1162521923 1037 dbSNP
rs1423172776 1040 dbSNP
rs1420215388 1041 dbSNP
rs796430001 1044 dbSNP
rs75507657 1045 dbSNP
rs1262697148 1046 dbSNP
rs1017474681 1047 dbSNP
rs1289686847 1048 dbSNP
rs1350668736 1058 dbSNP
rs7980215 1065 dbSNP
rs958478756 1069 dbSNP
rs976414327 1077 dbSNP
rs923092399 1079 dbSNP
rs1213143409 1085 dbSNP
rs776677802 1087 dbSNP
rs988896948 1092 dbSNP
rs552591427 1094 dbSNP
rs1277118447 1098 dbSNP
rs577868745 1112 dbSNP
rs914681733 1119 dbSNP
rs947312101 1120 dbSNP
rs1457015018 1121 dbSNP
rs3827881 1123 dbSNP
rs10744162 1129 dbSNP
rs575768133 1133 dbSNP
rs866891742 1160 dbSNP
rs935289095 1162 dbSNP
rs543231660 1165 dbSNP
rs1378402592 1170 dbSNP
rs561208177 1178 dbSNP
rs938907063 1190 dbSNP
rs1172926735 1196 dbSNP
rs6488903 1206 dbSNP
rs753001472 1209 dbSNP
rs547016046 1214 dbSNP
rs565285394 1215 dbSNP
rs1253554300 1218 dbSNP
rs1412361578 1224 dbSNP
rs1203059087 1226 dbSNP
rs897293920 1229 dbSNP
rs1401743183 1234 dbSNP
rs1335680484 1235 dbSNP
rs533225806 1236 dbSNP
rs1264141135 1244 dbSNP
rs386767196 1246 dbSNP
rs1225803032 1249 dbSNP
rs141136421 1253 dbSNP
rs1298793566 1261 dbSNP
rs1448345309 1268 dbSNP
rs1373457638 1270 dbSNP
rs569804417 1273 dbSNP
rs1047453058 1277 dbSNP
rs1299757566 1277 dbSNP
rs1464002154 1290 dbSNP
rs1050534772 1293 dbSNP
rs1176868396 1299 dbSNP
rs887568724 1303 dbSNP
rs1470861593 1306 dbSNP
rs1376098277 1317 dbSNP
rs887970748 1321 dbSNP
rs1005836588 1326 dbSNP
rs1335659435 1328 dbSNP
rs1015553264 1343 dbSNP
rs758765231 1366 dbSNP
rs1234630842 1372 dbSNP
rs898086947 1382 dbSNP
rs1244350929 1384 dbSNP
rs777449004 1389 dbSNP
rs1035395769 1398 dbSNP
rs1343314979 1409 dbSNP
rs1203210405 1412 dbSNP
rs1232095096 1414 dbSNP
rs1258941200 1429 dbSNP
rs1308511807 1446 dbSNP
rs1444010504 1450 dbSNP
rs1459314393 1451 dbSNP
rs1196795830 1453 dbSNP
rs879125609 1454 dbSNP
rs3748272 1455 dbSNP
rs1172150353 1457 dbSNP
rs1454502435 1460 dbSNP
rs1017190594 1462 dbSNP
rs1365826485 1462 dbSNP
rs964736741 1463 dbSNP
rs1439209770 1470 dbSNP
rs150723707 1473 dbSNP
rs1030690051 1475 dbSNP
rs1199529955 1485 dbSNP
rs977283191 1487 dbSNP
rs1379086522 1490 dbSNP
rs924488886 1500 dbSNP
rs1206158308 1533 dbSNP
rs1485982250 1537 dbSNP
rs943991294 1546 dbSNP
rs1175525391 1553 dbSNP
rs955879329 1556 dbSNP
rs1466905321 1560 dbSNP
rs988680435 1573 dbSNP
rs1021709468 1577 dbSNP
rs1315582108 1577 dbSNP
rs185122560 1581 dbSNP
rs968755622 1582 dbSNP
rs1382624382 1590 dbSNP
rs1387381337 1593 dbSNP
rs567014234 1594 dbSNP
rs1296617465 1597 dbSNP
rs1419120670 1599 dbSNP
rs534414817 1600 dbSNP
rs58028686 1601 dbSNP
rs1329921750 1609 dbSNP
rs189881056 1621 dbSNP
rs1430706340 1622 dbSNP
rs938695586 1623 dbSNP
rs1214026233 1633 dbSNP
rs74994957 1646 dbSNP
rs1291872859 1652 dbSNP
rs557346186 1659 dbSNP
rs942161416 1666 dbSNP
rs918859690 1667 dbSNP
rs886049067 1681 dbSNP
rs575925916 1682 dbSNP
rs1210301176 1693 dbSNP
rs10846553 1694 dbSNP
rs888624169 1695 dbSNP
rs1003150725 1696 dbSNP
rs1305017091 1708 dbSNP
rs1403724310 1709 dbSNP
rs1390605761 1722 dbSNP
rs1169029640 1724 dbSNP
rs1056806386 1726 dbSNP
rs894118699 1728 dbSNP
rs748880194 1730 dbSNP
rs114514797 1732 dbSNP
rs573330483 1733 dbSNP
rs1478573860 1740 dbSNP
rs182646256 1741 dbSNP
rs1200337266 1748 dbSNP
rs1449413582 1765 dbSNP
rs1288997612 1768 dbSNP
rs1196323031 1769 dbSNP
rs968504664 1770 dbSNP
rs1255915596 1781 dbSNP
rs1168094115 1783 dbSNP
rs1217843352 1792 dbSNP
rs1346363376 1793 dbSNP
rs1371935054 1793 dbSNP
rs755729836 1800 dbSNP
rs117646592 1804 dbSNP
rs1164567854 1806 dbSNP
rs532576230 1817 dbSNP
rs965245651 1827 dbSNP
rs886049068 1829 dbSNP
rs550981151 1831 dbSNP
rs1429509730 1833 dbSNP
rs1173996696 1835 dbSNP
rs115183932 1838 dbSNP
rs1404935616 1849 dbSNP
rs1245631323 1851 dbSNP
rs1303968431 1856 dbSNP
rs1459026200 1857 dbSNP
rs953341211 1860 dbSNP
rs1299134109 1865 dbSNP
rs114009690 1875 dbSNP
rs372872155 1876 dbSNP
rs1197744443 1882 dbSNP
rs1324041600 1896 dbSNP
rs1342812211 1901 dbSNP
rs1010164578 1909 dbSNP
rs1280941120 1915 dbSNP
rs1217700325 1919 dbSNP
rs1344311759 1921 dbSNP
rs1280202506 1922 dbSNP
rs1242474913 1923 dbSNP
rs1021427742 1928 dbSNP
rs1331301654 1929 dbSNP
rs1453777008 1931 dbSNP
rs1361273590 1933 dbSNP
rs909283340 1934 dbSNP
rs1412397956 1940 dbSNP
rs1398312153 1948 dbSNP
rs1295146096 1949 dbSNP
rs747915551 1952 dbSNP
rs1378361582 1957 dbSNP
rs968558231 1961 dbSNP
rs1177958425 1969 dbSNP
rs942169313 1970 dbSNP
rs1036919336 1981 dbSNP
rs938845221 1984 dbSNP
rs980153377 1989 dbSNP
rs1057375520 2021 dbSNP
rs1351632334 2024 dbSNP
rs1408056217 2027 dbSNP
rs1034876511 2033 dbSNP
rs1322621818 2034 dbSNP
rs886049069 2040 dbSNP
rs960049612 2047 dbSNP
rs993278216 2050 dbSNP
rs894731628 2054 dbSNP
rs1447827185 2061 dbSNP
rs1358182698 2066 dbSNP
rs1298463242 2083 dbSNP
rs185883563 2086 dbSNP
rs1357127573 2087 dbSNP
rs772018611 2091 dbSNP
rs1221694545 2100 dbSNP
rs1424322494 2102 dbSNP
rs567132604 2105 dbSNP
rs918839234 2114 dbSNP
rs1179877976 2115 dbSNP
rs1472362592 2116 dbSNP
rs930187246 2117 dbSNP
rs1242868294 2120 dbSNP
rs773003530 2121 dbSNP
rs1286376883 2122 dbSNP
rs369563085 2122 dbSNP
rs534379609 2126 dbSNP
rs150303181 2127 dbSNP
rs886049070 2127 dbSNP
rs1324008200 2129 dbSNP
rs1042763064 2130 dbSNP
rs942887327 2131 dbSNP
rs1038739330 2135 dbSNP
rs191518337 2138 dbSNP
rs900286032 2141 dbSNP
rs932991741 2143 dbSNP
rs528257134 2152 dbSNP
rs183540292 2154 dbSNP
rs886049071 2162 dbSNP
rs1338052958 2171 dbSNP
rs1297026373 2174 dbSNP
rs772714418 2183 dbSNP
rs886049072 2183 dbSNP
rs538237361 2187 dbSNP
rs886049073 2199 dbSNP
rs1159790045 2211 dbSNP
rs997978767 2226 dbSNP
rs1362783880 2228 dbSNP
rs1021565346 2233 dbSNP
rs1262805669 2235 dbSNP
rs1191814863 2236 dbSNP
rs1287488847 2237 dbSNP
rs1028164602 2241 dbSNP
rs904344157 2248 dbSNP
rs1418239655 2249 dbSNP
rs1221488319 2256 dbSNP
rs1308376441 2270 dbSNP
rs953999130 2271 dbSNP
rs556954860 2276 dbSNP
rs1217246549 2279 dbSNP
rs1034437405 2285 dbSNP
rs960434854 2286 dbSNP
rs1291646668 2298 dbSNP
rs1398027759 2298 dbSNP
rs115105206 2314 dbSNP
rs909238234 2316 dbSNP
rs113118376 2330 dbSNP
rs972146372 2338 dbSNP
rs781581969 2340 dbSNP
rs886049074 2343 dbSNP
rs1423131090 2346 dbSNP
rs74386589 2354 dbSNP
rs117222175 2358 dbSNP
rs1213350437 2359 dbSNP
rs910156976 2360 dbSNP
rs964175828 2361 dbSNP
rs1458595776 2367 dbSNP
rs1259983511 2371 dbSNP
rs540706275 2372 dbSNP
rs1240624917 2373 dbSNP
rs976018894 2375 dbSNP
rs1457618563 2376 dbSNP
rs916157483 2381 dbSNP
rs559073160 2392 dbSNP
rs577448549 2399 dbSNP
rs1051539665 2400 dbSNP
rs1298549044 2405 dbSNP
rs1240655686 2406 dbSNP
rs12368797 2407 dbSNP
rs912860788 2412 dbSNP
rs544271362 2415 dbSNP
rs1178777528 2423 dbSNP
rs1382668762 2425 dbSNP
rs1417903823 2429 dbSNP
rs1158773653 2444 dbSNP
rs1042977687 2451 dbSNP
rs904480503 2454 dbSNP
rs776825961 2455 dbSNP
rs1444243182 2469 dbSNP
rs1399288952 2473 dbSNP
rs1303571197 2476 dbSNP
rs1467766598 2477 dbSNP
rs188468645 2479 dbSNP
rs1405698713 2480 dbSNP
rs1440440331 2484 dbSNP
rs144043973 2486 dbSNP
rs1457546549 2506 dbSNP
rs1257296574 2513 dbSNP
rs1052848877 2526 dbSNP
rs1484018793 2528 dbSNP
rs1253924331 2532 dbSNP
rs1209481299 2534 dbSNP
rs1353823476 2537 dbSNP
rs1014732416 2556 dbSNP
rs900940694 2557 dbSNP
rs1025743298 2562 dbSNP
rs759547530 2568 dbSNP
rs542922030 2573 dbSNP
rs1028154736 2574 dbSNP
rs1400295541 2575 dbSNP
rs560718374 2577 dbSNP
rs1302516319 2578 dbSNP
rs1312562722 2582 dbSNP
rs58888228 2585 dbSNP
rs1234890951 2596 dbSNP
rs1260852960 2597 dbSNP
rs528247501 2609 dbSNP
rs1005546513 2611 dbSNP
rs193208741 2619 dbSNP
rs1017277952 2625 dbSNP
rs1198700239 2632 dbSNP
rs963389143 2644 dbSNP
rs972478155 2646 dbSNP
rs77292614 2647 dbSNP
rs960144073 2659 dbSNP
rs975692486 2668 dbSNP
rs922736835 2678 dbSNP
rs763253033 2684 dbSNP
rs544330341 2685 dbSNP
rs1266003179 2688 dbSNP
rs1177137274 2693 dbSNP
rs955579622 2694 dbSNP
rs948970729 2695 dbSNP
rs768131987 2696 dbSNP
rs926215197 2706 dbSNP
rs145999411 2711 dbSNP
rs764484667 2715 dbSNP
rs900930830 2716 dbSNP
rs1392034181 2718 dbSNP
rs1174803167 2721 dbSNP
rs1428825657 2727 dbSNP
rs1466384397 2732 dbSNP
rs1165536212 2733 dbSNP
rs1456656829 2734 dbSNP
rs1368254758 2736 dbSNP
rs1171909447 2737 dbSNP
rs943556377 2737 dbSNP
rs1264944161 2740 dbSNP
rs1049536682 2752 dbSNP
rs1042778360 2753 dbSNP
rs925618488 2754 dbSNP
rs937218493 2758 dbSNP
rs550259483 2760 dbSNP
rs1368292330 2761 dbSNP
rs1388294332 2763 dbSNP
rs895612975 2768 dbSNP
rs949944831 2769 dbSNP
rs1026356999 2772 dbSNP
rs1047585011 2775 dbSNP
rs1259353500 2776 dbSNP
rs1305269045 2779 dbSNP
rs183280767 2783 dbSNP
rs1385588292 2786 dbSNP
rs1005598881 2791 dbSNP
rs960093445 2792 dbSNP
rs186629315 2793 dbSNP
rs1467548197 2803 dbSNP
rs1425276155 2807 dbSNP
rs1016848989 2810 dbSNP
rs1474760621 2816 dbSNP
rs1377694018 2817 dbSNP
rs992938795 2818 dbSNP
rs752007088 2820 dbSNP
rs1449773192 2825 dbSNP
rs1252343310 2828 dbSNP
rs1023066543 2831 dbSNP
rs970225548 2832 dbSNP
rs117111955 2834 dbSNP
rs1214204821 2843 dbSNP
rs1029942894 2846 dbSNP
rs926219467 2855 dbSNP
rs1276671083 2867 dbSNP
rs955709888 2868 dbSNP
rs139941180 2869 dbSNP
rs1020038660 2871 dbSNP
rs1332666156 2872 dbSNP
rs1449395510 2873 dbSNP
rs149741581 2876 dbSNP
rs1409000041 2877 dbSNP
rs191476665 2877 dbSNP
rs77765053 2878 dbSNP
rs1417397137 2880 dbSNP
rs910966184 2881 dbSNP
rs937037147 2884 dbSNP
rs1038644446 2885 dbSNP
rs1236127964 2886 dbSNP
rs1179403363 2895 dbSNP
rs1443190217 2903 dbSNP
rs1409438787 2906 dbSNP
rs1281039665 2907 dbSNP
rs1198761421 2911 dbSNP
rs544697388 2922 dbSNP
rs145602576 2930 dbSNP
rs1242956097 2943 dbSNP
rs778662551 2944 dbSNP
rs994107485 2945 dbSNP
rs1047745199 2947 dbSNP
rs1335809083 2949 dbSNP
rs895790684 2953 dbSNP
rs1046844500 2956 dbSNP
rs1421425893 2960 dbSNP
rs1378453702 2966 dbSNP
rs1176376000 2979 dbSNP
rs970553549 2980 dbSNP
rs886049075 2982 dbSNP
rs1000367544 2983 dbSNP
rs1033620184 2985 dbSNP
rs956303495 2990 dbSNP
rs574796271 3000 dbSNP
rs183891010 3001 dbSNP
rs560831021 3004 dbSNP
rs922877758 3016 dbSNP
rs1038430128 3020 dbSNP
rs1285526834 3026 dbSNP
rs899830509 3035 dbSNP
rs528410193 3036 dbSNP
rs1213441954 3037 dbSNP
rs886049076 3043 dbSNP
rs540035304 3056 dbSNP
rs891411630 3059 dbSNP
rs1343319115 3064 dbSNP
rs1158318815 3065 dbSNP
rs1290032598 3066 dbSNP
rs985101229 3069 dbSNP
rs1162609299 3076 dbSNP
rs564739320 3078 dbSNP
rs758234529 3093 dbSNP
rs1474990902 3096 dbSNP
rs1010242765 3106 dbSNP
rs1264220920 3110 dbSNP
rs1195887180 3115 dbSNP
rs1021095270 3121 dbSNP
rs1241989085 3122 dbSNP
rs1222958771 3141 dbSNP
rs1323981262 3153 dbSNP
rs1288148196 3155 dbSNP
rs968228056 3156 dbSNP
rs978480335 3159 dbSNP
rs539564846 3160 dbSNP
rs1488829926 3164 dbSNP
rs1278476900 3166 dbSNP
rs777687879 3167 dbSNP
rs112529654 3168 dbSNP
rs550668152 3175 dbSNP
rs549904783 3186 dbSNP
rs1475232543 3188 dbSNP
rs1182469527 3191 dbSNP
rs918442954 3195 dbSNP
rs916907917 3201 dbSNP
rs929808289 3202 dbSNP
rs1416089329 3206 dbSNP
rs1424546014 3211 dbSNP
rs1426396081 3213 dbSNP
rs568731927 3214 dbSNP
rs1426744985 3215 dbSNP
rs1418894640 3216 dbSNP
rs111540619 3228 dbSNP
rs908353787 3229 dbSNP
rs7310965 3236 dbSNP
rs1258237589 3240 dbSNP
rs1220090381 3245 dbSNP
rs1305475366 3255 dbSNP
rs1038398686 3269 dbSNP
rs567165258 3270 dbSNP
rs905929722 3271 dbSNP
rs1429621140 3277 dbSNP
rs1284236424 3294 dbSNP
rs1219347921 3301 dbSNP
rs189971467 3303 dbSNP
rs1369593044 3309 dbSNP
rs1384375151 3315 dbSNP
rs776437074 3316 dbSNP
rs1400769731 3322 dbSNP
rs1244349348 3325 dbSNP
rs932636480 3334 dbSNP
rs1460650409 3338 dbSNP
rs1354220189 3339 dbSNP
rs1176836915 3343 dbSNP
rs1435010655 3347 dbSNP
rs1051071268 3355 dbSNP
rs1000717505 3356 dbSNP
rs7297473 3358 dbSNP
rs1440628701 3363 dbSNP
rs1009799844 3367 dbSNP
rs1240408609 3368 dbSNP
rs1219209453 3375 dbSNP
rs1250444882 3376 dbSNP
rs1282659258 3377 dbSNP
rs1042677065 3386 dbSNP
rs1313456277 3405 dbSNP
rs1301079229 3408 dbSNP
rs1233470750 3415 dbSNP
rs1377635784 3421 dbSNP
rs2333834 3426 dbSNP
rs1389497701 3428 dbSNP
rs1001058802 3440 dbSNP
rs1239222873 3446 dbSNP
rs1372817966 3449 dbSNP
rs1303665566 3456 dbSNP
rs1032761864 3457 dbSNP
rs1467595229 3457 dbSNP
rs1442841355 3459 dbSNP
rs958446798 3465 dbSNP
rs1373713176 3468 dbSNP
rs1183134612 3479 dbSNP
rs1420826263 3484 dbSNP
rs1013080778 3490 dbSNP
rs1180057515 3491 dbSNP
rs1440289980 3491 dbSNP
rs1367710794 3494 dbSNP
rs1160037326 3497 dbSNP
rs1029837495 3500 dbSNP
rs868846588 3506 dbSNP
rs1486488543 3511 dbSNP
rs1399693465 3513 dbSNP
rs971482581 3518 dbSNP
rs866392349 3527 dbSNP
rs1334420918 3529 dbSNP
rs1407919860 3546 dbSNP
rs73420351 3554 dbSNP
rs556596882 3564 dbSNP
rs1262450529 3575 dbSNP
rs1236549365 3576 dbSNP
rs1316130889 3581 dbSNP
rs1335547206 3583 dbSNP
rs910900754 3585 dbSNP
rs962515663 3588 dbSNP
rs1378271437 3597 dbSNP
rs73420352 3604 dbSNP
rs1328279527 3611 dbSNP
rs1278078113 3637 dbSNP
rs1400723129 3638 dbSNP
rs974198055 3644 dbSNP
rs1355131487 3653 dbSNP
rs77670478 3655 dbSNP
rs1453413850 3657 dbSNP
rs1369407719 3661 dbSNP
rs535362776 3664 dbSNP
rs2651 3666 dbSNP
rs774721332 3674 dbSNP
rs1265223788 3680 dbSNP
rs1051636200 3685 dbSNP
rs1475973442 3686 dbSNP
rs1255015864 3697 dbSNP
rs1203087534 3699 dbSNP
rs1488342803 3702 dbSNP
rs1238887548 3706 dbSNP
rs1203316393 3708 dbSNP
rs1349950101 3708 dbSNP
rs1265795633 3710 dbSNP
rs1234958973 3714 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gggUGGUCGACGAGGGACCGGGu 5'
             :||| | ||  |||||||| 
Target 5' ugaGCCA-CCGC-GCCUGGCCC- 3'
12 - 31
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000330342.3 | 3UTR | GGAUUACAGGCGUGAGCCACCGCGCCUGGCCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000330342.3 | 3UTR | GAUUACAGGCGUGAGCCACCGCGCCUGGCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
87 hsa-miR-4640-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100106 ABT1 activator of basal transcription 1 2 8
MIRT248144 LMBR1L limb development membrane protein 1 like 2 2
MIRT327062 KLHL15 kelch like family member 15 2 2
MIRT347231 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT450221 CENPN centromere protein N 2 2
MIRT451264 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT452701 C1orf226 chromosome 1 open reading frame 226 2 2
MIRT453212 CERS1 ceramide synthase 1 2 2
MIRT454822 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT454883 RAD50 RAD50 double strand break repair protein 2 2
MIRT455783 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455858 TMEM254 transmembrane protein 254 2 2
MIRT457615 UPK3BL uroplakin 3B like 1 2 2
MIRT457822 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 4
MIRT458344 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458376 ITM2C integral membrane protein 2C 2 2
MIRT458928 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459066 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT460138 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460818 FSTL4 follistatin like 4 2 2
MIRT461285 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT462738 EFNB1 ephrin B1 2 2
MIRT464556 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT477910 DUSP2 dual specificity phosphatase 2 2 2
MIRT479073 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT479534 CDC5L cell division cycle 5 like 2 4
MIRT485628 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 2 2
MIRT489896 PPIC peptidylprolyl isomerase C 2 4
MIRT490737 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491201 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT492681 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT494593 ATG7 autophagy related 7 2 2
MIRT495061 PADI3 peptidyl arginine deiminase 3 2 4
MIRT496623 TMEM67 transmembrane protein 67 2 2
MIRT497177 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT498217 TLN2 talin 2 2 2
MIRT498306 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT499668 NPHP3 nephrocystin 3 2 2
MIRT508080 ANKRD52 ankyrin repeat domain 52 2 2
MIRT509707 ANKRD23 ankyrin repeat domain 23 2 2
MIRT509841 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT512814 ARRDC2 arrestin domain containing 2 2 2
MIRT513353 SLIT1 slit guidance ligand 1 2 2
MIRT514293 FXYD5 FXYD domain containing ion transport regulator 5 2 2
MIRT516598 FAM89A family with sequence similarity 89 member A 2 4
MIRT516616 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT518348 CCL5 C-C motif chemokine ligand 5 2 2
MIRT520130 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT522072 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT526461 OSBPL5 oxysterol binding protein like 5 2 2
MIRT528278 MBL2 mannose binding lectin 2 2 2
MIRT534844 RAB15 RAB15, member RAS oncogene family 2 4
MIRT542245 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT543299 ZNF585B zinc finger protein 585B 2 2
MIRT552456 ZNF410 zinc finger protein 410 2 2
MIRT553641 TJAP1 tight junction associated protein 1 2 2
MIRT557103 HOXA3 homeobox A3 2 2
MIRT570782 FANCA Fanconi anemia complementation group A 2 2
MIRT630912 ZMAT2 zinc finger matrin-type 2 2 2
MIRT631034 ZNF878 zinc finger protein 878 2 2
MIRT639017 AAK1 AP2 associated kinase 1 2 2
MIRT648596 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT648939 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT652834 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT659347 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT664163 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT670511 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT671246 TMEM41B transmembrane protein 41B 2 2
MIRT672120 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT672313 CD3D CD3d molecule 2 2
MIRT672543 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT673036 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673814 DARS aspartyl-tRNA synthetase 2 2
MIRT674858 GINM1 glycoprotein integral membrane 1 2 2
MIRT674970 SH3BP2 SH3 domain binding protein 2 2 2
MIRT675185 KIF1C kinesin family member 1C 2 2
MIRT675219 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT675558 MED16 mediator complex subunit 16 2 2
MIRT682566 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT684640 PDE4C phosphodiesterase 4C 2 2
MIRT689722 ATXN2 ataxin 2 2 2
MIRT693594 SLC39A1 solute carrier family 39 member 1 2 2
MIRT704745 CDKN2B cyclin dependent kinase inhibitor 2B 2 2
MIRT712779 ZNF154 zinc finger protein 154 2 2
MIRT718118 OTOF otoferlin 2 2
MIRT720115 SAMD4A sterile alpha motif domain containing 4A 2 2
MIRT720275 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4640 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4640-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4640-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4640-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4640-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4640-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4640-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4640-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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