pre-miRNA Information
pre-miRNA hsa-mir-5691   
Genomic Coordinates chr11: 9090312 - 9090379
Description Homo sapiens miR-5691 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-5691
Sequence 9| UUGCUCUGAGCUCCGAGAAAGC |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1042238449 3 dbSNP
rs554804494 11 dbSNP
rs1172229307 13 dbSNP
rs112511786 14 dbSNP
Putative Targets

Gene Information
Gene Symbol RAB10   
Synonyms -
Description RAB10, member RAS oncogene family
Transcript NM_016131   
Expression
Putative miRNA Targets on RAB10
3'UTR of RAB10
(miRNA target sites are highlighted)
>RAB10|NM_016131|3'UTR
   1 GCATTCTCCTGTTCCATCAGTTGCCATCCACTACCCCGTTTTCTCTTCTTGCTGCAAAATAAACCACTCTGTCCATTTTT
  81 AACTCTAAACAGATATTTTTGTTTCTCATCTTAACTATCCAAGCCACCTATTTTATTTGTTCTTTCATCTGTGACTGCTT
 161 GCTGACTTTATCATAATTTTCTTCAAACAAAAAAATGTATAGAAAAATCATGTCTGTGAGTTCATTTTTAAATGTACTTG
 241 CTCAGCTCAACTGCATTTCAGTTGTATTATAGTCCAGTTCTTATCAACATTAAAACCTATAGCAATCATTTCAAATCTAT
 321 TCTGCAAATTGTATAAGAATAAAGTTAGAATTAACAATTTTATTTTGTACAACAGTGGAATTTTCTGTCATGGATAATGT
 401 GCTTGAGTCCCTATAATCTATAGACATGTGATAGCAAAAGAAACAAACAAAAGCCAGGAAAACACTCATTTTCGCCTTGA
 481 ATATGTAAATGGGATTAATTTTGTCCTGTGCCTTATGTGGAAAGGAACTTCTTTGGTTTTCCTTTTTTGTTCTGGTGGAA
 561 GCATGTGCAGGAGACATATCATCCAAACATAAACCATTAAAATGTTTGTGGTTTGCTTGGCTGTAATTTTCAAAGTAGTT
 641 AATTGAGGACAAAGGGTAATGCAGAAGTGATAGCTTTGGTTTGCTGAGTCTTGTTTTAAGTGGCCTTGATATTTAAAACT
 721 ATTCCTGCCACCATTTCTTCTCCTTGGCCACTTCTTCCTTGCGTCTCCCTGCATGCTGCTTTATTTGCTTCTCCCTCCCC
 801 AACCACCTCATGGTATATTTAAGAGTGAAAGGGACAAACTAGTAGGTTTGTCAAGTTTAATATAAAGCACTGATGTAACT
 881 TGCTAGGTAAACGGAAAGATAAGTTCTAACTGCCTACTATCCAATGTCAGTTAATTGGTGTCTTCCCCCCTCATTTGCTC
 961 TCTTCCCTAAAATGTGTCCCAGATGCCTTCATTTGCTGTTTTACTTCTATGTTCTGCTTTTCCTCCTCTCTTTGTTCCCT
1041 TCCTGTCTATCCATTGAGTTTATGAAATGGAAGAGTTAACTGCATGCACTAGTGTTTGGAGGGTGTTGTGGTTTGTCTTT
1121 CTAATTAGGTGTATAGCCTATTCACTTTCCTAGAATAAATCTCTTAACCTAAATTTGAGTAGTCTGCATTTTGGCAACTC
1201 CTCTAGCAGCTTGGTAGCCTAGTACAGGTTGTTTTTTTAAAAAAGGAAAAGCAGGAAGGAGGAGTGAATTTTATTAACAT
1281 GTTTGCCAAATGTATTGAGATTTGGCCTCTGAAGAACACTTTTTCAGTGTTAAGTTTCTTTACCTTAAGATTCAGAAATA
1361 CTTTAGAATATTATTAATTTTAAGTCCTGTCTTTACATCCTTTTGGAAAACTTGTATTACCATGGGTTTGGAAAAAGGAC
1441 AACGAAAGGCTTTTCATGTAAAGATAAGATCTTTAGCTATCTCTAACCCTGTCCTTTTTTCACTGCATTTTTTCTAGTTT
1521 TGCTTCATTGCTTATCATTAGGATAGGGTAAGTGAAGTTTGCTATGCTGCTAGCATCCTAAGATGATACCTTTGTTGAAA
1601 GAATTGTGAATAGCATGATTCATTTCTAGCAGAGGCTGAGTTTAGGACAGCAGCTTCCATTGAGAAGTCTTTCTGTGTCG
1681 TGAATAGCATTTTAATGACCTCTTGGCTCACATAAGCAAACAACATAGGGACGTATCTGCTATGAAAATCCACAAATTTT
1761 TCAGATAGTGCCCTAAAAACAATTTTATATGCCTCACTGGTTGTTATTCTTAGGTTATTCCCACACTTGACTTTATCATT
1841 GTTTACTACTAGTAAAAAGCAGCATTGCCAAATAATCCCTAATTTTCCACTAAAAATATAATGAAATGATGTTAAGCTTT
1921 TTGAAAAGTTTAGGTTAAACCTACTGTTGTTAGATTAATGTATTTGTTGCTTCCCTTTATCTGGAATGTGGCATTAGCTT
2001 TTTTATTTTAACCCTCTTTAATTCTTATTCAATTCCATGACTTAAGGTTGGAGAGCTAAACACTGGGATTTTTGGATAAC
2081 AGACTGACAGTTTTGCATAATTATAATCGGCATTGTACATAGAAAGGATATGGCTACCTTTTGTTAAATCTGCACTTTCT
2161 AAATATCAAAAAAGGGAAATGAAGTATAAATCAATTTTTGTATAATCTGTTTGAAACATGAGTTTTATTTGCTTAATATT
2241 AGGGCTTTGCCCCTTTTCTGTAAGTCTCTTGGGATCCTGTGTAGAAGCTGTTCTCATTAAACACCAAACAGTTAAGTCCA
2321 TTCTCTGGTACTAGCTACAAATTCGGTTTCATATTCTACTTAACAATTTAAATAAACTGAAATATTTCTAGATGGTCTAC
2401 TTCTGTTCATATAAAAACAAAACTTGATTTCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgAAAGAGCCUCGAGUCUCguu 5'
            |||||   ||  |||||   
Target 5' caTTTCT---AG--CAGAGgct 3'
1621 - 1637 113.00 -7.42
2
miRNA  3' cgAAAGAGCC-----U-CGAGUCUCGUu 5'
            || ||:||     |  :||| ||:| 
Target 5' gtTTGCTTGGCTGTAATTTTCAAAGTAg 3'
611 - 638 104.00 -9.90
3
miRNA  3' cgaAAGAGCCUCGAGUCUcguu 5'
             ||:|:|||   ||||    
Target 5' ggaTTTTTGGATAACAGActga 3'
2066 - 2087 103.00 -9.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30448918 10 COSMIC
COSN31505302 24 COSMIC
COSN30140544 39 COSMIC
COSN31493534 60 COSMIC
COSN31540169 70 COSMIC
COSN30125980 121 COSMIC
COSN29252075 202 COSMIC
COSN26034832 244 COSMIC
COSN6177136 270 COSMIC
COSN31519516 339 COSMIC
COSN31540595 482 COSMIC
COSN7051804 508 COSMIC
COSN28628417 542 COSMIC
COSN31513369 662 COSMIC
COSN30545046 713 COSMIC
COSN24298644 856 COSMIC
COSN31583221 1058 COSMIC
COSN31527582 1162 COSMIC
COSN26033813 1237 COSMIC
COSN17943091 1251 COSMIC
COSN27468551 1300 COSMIC
COSN31609671 1315 COSMIC
COSN30174370 1339 COSMIC
COSN32065434 1369 COSMIC
COSN28428641 1513 COSMIC
COSN30174580 1527 COSMIC
COSN26649299 1531 COSMIC
COSN31607161 1602 COSMIC
COSN31592896 1723 COSMIC
COSN26596429 1756 COSMIC
COSN31531970 2090 COSMIC
COSN30173165 2277 COSMIC
COSN31561408 2289 COSMIC
COSN26642856 2296 COSMIC
COSN30173137 2296 COSMIC
rs142787485 267 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774344763 4 dbSNP
rs1331133253 6 dbSNP
rs746364791 9 dbSNP
rs772775405 11 dbSNP
rs775933068 15 dbSNP
rs867671492 16 dbSNP
rs761137629 25 dbSNP
rs377740486 26 dbSNP
rs371382505 27 dbSNP
rs1432140667 33 dbSNP
rs761417161 34 dbSNP
rs764786819 35 dbSNP
rs377461983 38 dbSNP
rs370145200 39 dbSNP
rs1383298271 49 dbSNP
rs766316364 53 dbSNP
rs968317891 64 dbSNP
rs1016416685 65 dbSNP
rs1325733722 74 dbSNP
rs979284702 76 dbSNP
rs561289040 94 dbSNP
rs1353107089 102 dbSNP
rs1292288076 109 dbSNP
rs899319754 112 dbSNP
rs1296271102 118 dbSNP
rs964564269 123 dbSNP
rs1355058672 124 dbSNP
rs11542971 126 dbSNP
rs1172831567 129 dbSNP
rs1277323137 131 dbSNP
rs996369924 132 dbSNP
rs975396496 147 dbSNP
rs1340964872 149 dbSNP
rs1425819016 152 dbSNP
rs1248805892 166 dbSNP
rs1229428371 167 dbSNP
rs922580677 167 dbSNP
rs1481212668 170 dbSNP
rs933988382 171 dbSNP
rs1212438557 181 dbSNP
rs983306259 183 dbSNP
rs1028071778 189 dbSNP
rs1272035942 189 dbSNP
rs140479291 189 dbSNP
rs953963695 195 dbSNP
rs1304527290 197 dbSNP
rs986450153 211 dbSNP
rs141400709 212 dbSNP
rs1354975485 217 dbSNP
rs1333273287 220 dbSNP
rs6705 221 dbSNP
rs1165787003 234 dbSNP
rs1459591768 236 dbSNP
rs1362293734 237 dbSNP
rs1158749337 238 dbSNP
rs955962193 242 dbSNP
rs1487091093 249 dbSNP
rs1192274545 251 dbSNP
rs905458838 254 dbSNP
rs938222014 255 dbSNP
rs1209929296 260 dbSNP
rs35339463 261 dbSNP
rs1264264822 262 dbSNP
rs142787485 267 dbSNP
rs185327128 271 dbSNP
rs1311232062 283 dbSNP
rs1231938963 285 dbSNP
rs1368431473 288 dbSNP
rs747316729 295 dbSNP
rs1388597062 297 dbSNP
rs1382969622 300 dbSNP
rs771513465 306 dbSNP
rs1454546480 316 dbSNP
rs968502228 319 dbSNP
rs1021160891 320 dbSNP
rs1378613548 325 dbSNP
rs1396216830 328 dbSNP
rs979942900 334 dbSNP
rs927391838 337 dbSNP
rs1201736220 339 dbSNP
rs1434387866 348 dbSNP
rs938772057 355 dbSNP
rs1259119401 358 dbSNP
rs547581073 371 dbSNP
rs1001114067 381 dbSNP
rs1287829287 392 dbSNP
rs1208478980 393 dbSNP
rs1346975258 399 dbSNP
rs1275364699 406 dbSNP
rs1235397662 409 dbSNP
rs772958234 409 dbSNP
rs1017361746 420 dbSNP
rs777275669 433 dbSNP
rs1382944844 434 dbSNP
rs530757234 440 dbSNP
rs975995046 441 dbSNP
rs1360861113 444 dbSNP
rs1037940837 457 dbSNP
rs1434486132 458 dbSNP
rs1255880222 462 dbSNP
rs769924855 465 dbSNP
rs775884005 468 dbSNP
rs1030191844 469 dbSNP
rs566132190 474 dbSNP
rs755553834 475 dbSNP
rs1191870522 477 dbSNP
rs1477908344 478 dbSNP
rs955598604 482 dbSNP
rs138885628 484 dbSNP
rs1339771367 488 dbSNP
rs1485214695 491 dbSNP
rs1245492629 492 dbSNP
rs548592971 494 dbSNP
rs996338863 504 dbSNP
rs1350868151 517 dbSNP
rs1238902439 523 dbSNP
rs190036748 539 dbSNP
rs1286316954 543 dbSNP
rs1342527208 549 dbSNP
rs889505906 550 dbSNP
rs1414451603 555 dbSNP
rs550782949 559 dbSNP
rs116071189 563 dbSNP
rs1396425661 570 dbSNP
rs1443489647 575 dbSNP
rs556390406 577 dbSNP
rs571363701 579 dbSNP
rs938150314 586 dbSNP
rs1056765715 587 dbSNP
rs955695520 595 dbSNP
rs1162319781 596 dbSNP
rs1236358511 600 dbSNP
rs1439175316 601 dbSNP
rs1237789847 603 dbSNP
rs1189379380 605 dbSNP
rs1435941602 607 dbSNP
rs555977300 608 dbSNP
rs1199260970 609 dbSNP
rs1320068589 615 dbSNP
rs945037519 619 dbSNP
rs1382429488 623 dbSNP
rs1232862812 627 dbSNP
rs1464767021 633 dbSNP
rs1286258059 642 dbSNP
rs553501225 649 dbSNP
rs1170570967 656 dbSNP
rs1042019773 657 dbSNP
rs571800875 658 dbSNP
rs1332614293 659 dbSNP
rs1021492134 661 dbSNP
rs183374896 669 dbSNP
rs903612355 672 dbSNP
rs1460541303 676 dbSNP
rs531813299 686 dbSNP
rs148988866 693 dbSNP
rs979925822 713 dbSNP
rs900372615 716 dbSNP
rs143709141 718 dbSNP
rs1363063655 720 dbSNP
rs1459064100 722 dbSNP
rs997301950 722 dbSNP
rs1251170607 728 dbSNP
rs1213154148 730 dbSNP
rs1257920264 734 dbSNP
rs960127324 738 dbSNP
rs1030208228 748 dbSNP
rs773098314 749 dbSNP
rs907976743 750 dbSNP
rs1310499667 753 dbSNP
rs1004635860 755 dbSNP
rs34035103 757 dbSNP
rs940670241 762 dbSNP
rs1037740740 763 dbSNP
rs529746314 764 dbSNP
rs1300544864 770 dbSNP
rs543772162 774 dbSNP
rs1318331927 779 dbSNP
rs759434583 780 dbSNP
rs546285223 782 dbSNP
rs1325091983 796 dbSNP
rs566428449 798 dbSNP
rs890635117 800 dbSNP
rs963016836 803 dbSNP
rs1346161288 804 dbSNP
rs974185688 807 dbSNP
rs1478387238 812 dbSNP
rs1009098664 813 dbSNP
rs1041171724 816 dbSNP
rs1206055514 824 dbSNP
rs926688620 827 dbSNP
rs1446669907 828 dbSNP
rs959564107 834 dbSNP
rs115717224 839 dbSNP
rs1346249985 840 dbSNP
rs1457339274 842 dbSNP
rs1179299147 843 dbSNP
rs532599621 863 dbSNP
rs918173226 870 dbSNP
rs945621226 872 dbSNP
rs1428161410 875 dbSNP
rs1339464370 880 dbSNP
rs1298509399 882 dbSNP
rs185930966 883 dbSNP
rs148124686 884 dbSNP
rs757694396 885 dbSNP
rs753715054 893 dbSNP
rs936327955 894 dbSNP
rs1038793082 900 dbSNP
rs1376797576 912 dbSNP
rs1475170265 913 dbSNP
rs1264164625 914 dbSNP
rs968565411 917 dbSNP
rs1178453907 925 dbSNP
rs997311789 927 dbSNP
rs1051575964 929 dbSNP
rs1001875324 938 dbSNP
rs1280061903 945 dbSNP
rs750555698 945 dbSNP
rs1034157787 951 dbSNP
rs1465086748 961 dbSNP
rs1401511193 962 dbSNP
rs1353294354 964 dbSNP
rs1016580894 966 dbSNP
rs530201614 972 dbSNP
rs962774213 977 dbSNP
rs1360840419 978 dbSNP
rs1331425359 981 dbSNP
rs1168320779 984 dbSNP
rs1374972142 986 dbSNP
rs1424487094 992 dbSNP
rs1387754746 996 dbSNP
rs1173058493 997 dbSNP
rs1474369005 998 dbSNP
rs1255852611 999 dbSNP
rs1182823850 1006 dbSNP
rs1384651509 1009 dbSNP
rs960131040 1018 dbSNP
rs1204503735 1024 dbSNP
rs995506598 1026 dbSNP
rs1258184980 1027 dbSNP
rs1220043623 1029 dbSNP
rs1332250243 1033 dbSNP
rs1228670665 1043 dbSNP
rs1311672717 1043 dbSNP
rs992714747 1046 dbSNP
rs1296362063 1048 dbSNP
rs1331987544 1050 dbSNP
rs1401076139 1054 dbSNP
rs1015008855 1055 dbSNP
rs1333475530 1067 dbSNP
rs962130401 1072 dbSNP
rs1460023292 1084 dbSNP
rs1225765286 1085 dbSNP
rs959411866 1088 dbSNP
rs1165829821 1089 dbSNP
rs1425906886 1091 dbSNP
rs1256601434 1097 dbSNP
rs973363897 1102 dbSNP
rs1406298695 1103 dbSNP
rs1178530925 1104 dbSNP
rs992342060 1109 dbSNP
rs920614567 1118 dbSNP
rs1199997768 1122 dbSNP
rs967263577 1134 dbSNP
rs1466810072 1141 dbSNP
rs1317820231 1145 dbSNP
rs932195102 1146 dbSNP
rs986777644 1149 dbSNP
rs548675050 1153 dbSNP
rs141897258 1156 dbSNP
rs925519462 1161 dbSNP
rs754490468 1168 dbSNP
rs1311473117 1177 dbSNP
rs1487549292 1197 dbSNP
rs1390178026 1201 dbSNP
rs1209416121 1204 dbSNP
rs1294313302 1206 dbSNP
rs936344028 1210 dbSNP
rs1343760510 1222 dbSNP
rs1052648970 1225 dbSNP
rs974345612 1227 dbSNP
rs1440784712 1228 dbSNP
rs57628243 1232 dbSNP
rs191076470 1233 dbSNP
rs1192377344 1238 dbSNP
rs3791730 1239 dbSNP
rs945800444 1240 dbSNP
rs1266105133 1262 dbSNP
rs1051931771 1263 dbSNP
rs1489272143 1265 dbSNP
rs767415374 1269 dbSNP
rs1283549965 1271 dbSNP
rs1042680015 1281 dbSNP
rs1421288749 1282 dbSNP
rs752315509 1286 dbSNP
rs1288054579 1288 dbSNP
rs1477454088 1290 dbSNP
rs1001236266 1292 dbSNP
rs1171309181 1294 dbSNP
rs1232049077 1303 dbSNP
rs1034678440 1311 dbSNP
rs940509414 1318 dbSNP
rs1302106889 1320 dbSNP
rs1355719514 1320 dbSNP
rs571607398 1323 dbSNP
rs895767280 1330 dbSNP
rs1420687290 1332 dbSNP
rs1362901867 1343 dbSNP
rs1172281823 1346 dbSNP
rs1466008028 1361 dbSNP
rs1292537359 1362 dbSNP
rs1014471055 1365 dbSNP
rs879054994 1370 dbSNP
rs1014769181 1371 dbSNP
rs1406440806 1374 dbSNP
rs571519029 1376 dbSNP
rs1276682755 1390 dbSNP
rs1340370454 1395 dbSNP
rs1219713780 1417 dbSNP
rs538500699 1420 dbSNP
rs995517727 1422 dbSNP
rs1298401653 1423 dbSNP
rs1265110457 1425 dbSNP
rs3177055 1426 dbSNP
rs1344245403 1432 dbSNP
rs895251512 1443 dbSNP
rs973498335 1444 dbSNP
rs35596741 1445 dbSNP
rs966937922 1446 dbSNP
rs1400884758 1455 dbSNP
rs1342727572 1464 dbSNP
rs535962705 1472 dbSNP
rs978662744 1481 dbSNP
rs1266164029 1487 dbSNP
rs557129940 1487 dbSNP
rs1174899857 1493 dbSNP
rs1467123910 1495 dbSNP
rs147233049 1504 dbSNP
rs1169473051 1506 dbSNP
rs1214812097 1508 dbSNP
rs139059682 1508 dbSNP
rs1185157465 1527 dbSNP
rs958254539 1535 dbSNP
rs986186440 1537 dbSNP
rs1202164266 1551 dbSNP
rs1456473997 1553 dbSNP
rs537002785 1568 dbSNP
rs1219429009 1569 dbSNP
rs944983976 1571 dbSNP
rs987271477 1590 dbSNP
rs559033085 1601 dbSNP
rs988227514 1613 dbSNP
rs1421601952 1616 dbSNP
rs1422023927 1629 dbSNP
rs914089605 1635 dbSNP
rs940539886 1638 dbSNP
rs577456140 1645 dbSNP
rs1390212082 1652 dbSNP
rs757684934 1657 dbSNP
rs1426158510 1660 dbSNP
rs1330124311 1663 dbSNP
rs1042775211 1668 dbSNP
rs1402029904 1674 dbSNP
rs904304074 1680 dbSNP
rs1161165796 1681 dbSNP
rs936995771 1688 dbSNP
rs1055703394 1690 dbSNP
rs781768720 1696 dbSNP
rs895178278 1698 dbSNP
rs1189483463 1700 dbSNP
rs183660344 1701 dbSNP
rs1043259 1705 dbSNP
rs895685091 1712 dbSNP
rs1401025058 1718 dbSNP
rs1291038422 1721 dbSNP
rs187986975 1722 dbSNP
rs192028222 1731 dbSNP
rs1304361950 1733 dbSNP
rs897651011 1734 dbSNP
rs999712046 1749 dbSNP
rs994699756 1754 dbSNP
rs1027740170 1756 dbSNP
rs1355834275 1759 dbSNP
rs953520268 1769 dbSNP
rs1407185491 1781 dbSNP
rs1007936789 1784 dbSNP
rs1164795076 1789 dbSNP
rs1352666769 1790 dbSNP
rs974992808 1793 dbSNP
rs1179239321 1796 dbSNP
rs182982214 1798 dbSNP
rs1029190493 1803 dbSNP
rs1018948185 1813 dbSNP
rs966670774 1831 dbSNP
rs1198382498 1844 dbSNP
rs1243685337 1844 dbSNP
rs987500772 1850 dbSNP
rs1482229366 1851 dbSNP
rs907627210 1852 dbSNP
rs200157829 1858 dbSNP
rs1287355857 1861 dbSNP
rs1445941262 1868 dbSNP
rs973281275 1877 dbSNP
rs868317696 1880 dbSNP
rs1374838080 1882 dbSNP
rs1272595920 1885 dbSNP
rs1435235079 1898 dbSNP
rs914183700 1899 dbSNP
rs1304650410 1900 dbSNP
rs920451062 1901 dbSNP
rs1359714430 1904 dbSNP
rs1159143512 1910 dbSNP
rs542354201 1921 dbSNP
rs1423095020 1929 dbSNP
rs968169240 1937 dbSNP
rs1055755206 1939 dbSNP
rs979605195 1944 dbSNP
rs1248669548 1946 dbSNP
rs917169111 1952 dbSNP
rs553109621 1961 dbSNP
rs949415976 1970 dbSNP
rs746333943 1975 dbSNP
rs937110625 1980 dbSNP
rs1219366758 2005 dbSNP
rs1310969633 2006 dbSNP
rs1275810777 2014 dbSNP
rs1055846362 2015 dbSNP
rs1000040742 2017 dbSNP
rs1447854800 2019 dbSNP
rs1053784905 2027 dbSNP
rs1303944898 2029 dbSNP
rs1339549784 2030 dbSNP
rs916936742 2032 dbSNP
rs949784900 2034 dbSNP
rs1036265192 2037 dbSNP
rs1357367254 2043 dbSNP
rs1333507169 2046 dbSNP
rs1444700203 2052 dbSNP
rs1415098766 2056 dbSNP
rs1431605218 2059 dbSNP
rs1168756286 2061 dbSNP
rs770012899 2068 dbSNP
rs1424714569 2081 dbSNP
rs563727242 2083 dbSNP
rs1482518971 2084 dbSNP
rs1237396401 2085 dbSNP
rs1211495515 2089 dbSNP
rs780326083 2093 dbSNP
rs1225748042 2097 dbSNP
rs1264487794 2105 dbSNP
rs1216363944 2109 dbSNP
rs749293085 2110 dbSNP
rs1007660539 2111 dbSNP
rs1029201752 2113 dbSNP
rs1216106630 2127 dbSNP
rs1376780121 2129 dbSNP
rs1310225542 2133 dbSNP
rs1283506729 2134 dbSNP
rs1209266618 2137 dbSNP
rs1413822209 2138 dbSNP
rs1448720830 2164 dbSNP
rs1019334218 2166 dbSNP
rs1408338726 2176 dbSNP
rs1329410973 2181 dbSNP
rs1465235570 2185 dbSNP
rs1401295348 2186 dbSNP
rs1263703528 2187 dbSNP
rs1172880114 2189 dbSNP
rs1422409882 2189 dbSNP
rs1413572255 2195 dbSNP
rs955092488 2197 dbSNP
rs1176211416 2201 dbSNP
rs1244387082 2212 dbSNP
rs1237094291 2213 dbSNP
rs1008578958 2214 dbSNP
rs530856580 2219 dbSNP
rs1206242439 2230 dbSNP
rs1319670243 2231 dbSNP
rs1311779576 2232 dbSNP
rs1470305041 2242 dbSNP
rs753752207 2244 dbSNP
rs1014982184 2252 dbSNP
rs1307080339 2260 dbSNP
rs1446111354 2269 dbSNP
rs1377804299 2270 dbSNP
rs1009545951 2276 dbSNP
rs1456608440 2278 dbSNP
rs1423425061 2279 dbSNP
rs1021160141 2289 dbSNP
rs1165949777 2302 dbSNP
rs1427036875 2303 dbSNP
rs1379001685 2305 dbSNP
rs973179226 2310 dbSNP
rs768988261 2320 dbSNP
rs1414278024 2334 dbSNP
rs552536745 2340 dbSNP
rs1177729097 2342 dbSNP
rs1408905621 2345 dbSNP
rs565069952 2346 dbSNP
rs1222024091 2347 dbSNP
rs1361400357 2349 dbSNP
rs1283770135 2355 dbSNP
rs747162943 2358 dbSNP
rs760531336 2362 dbSNP
rs532416296 2365 dbSNP
rs1309262168 2370 dbSNP
rs1385244402 2378 dbSNP
rs1367179886 2389 dbSNP
rs1294412869 2394 dbSNP
rs1336503048 2400 dbSNP
rs1359086175 2409 dbSNP
rs1158541972 2412 dbSNP
rs1363821966 2424 dbSNP
rs547259422 2424 dbSNP
rs991282138 2427 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgaaaGAGCCUCGAGUCUCGUu 5'
               |||  ||| | |:||: 
Target 5' cugcaCUC-CAGC-CUGGGCGa 3'
11 - 30
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000264710.4 | 3UTR | AGCCGAGAUAGCGCCACUGCACUCCAGCCUGGGCGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000264710.4 | 3UTR | GAUAGCGCCACUGCACUCCAGCCUGGGCGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-5691 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT091162 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT242227 TTC9 tetratricopeptide repeat domain 9 2 4
MIRT246192 TXNIP thioredoxin interacting protein 2 2
MIRT251553 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT387267 SOX9 SRY-box 9 2 2
MIRT463486 ZC3H11A zinc finger CCCH-type containing 11A 2 12
MIRT494446 BTG2 BTG anti-proliferation factor 2 2 2
MIRT496478 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT501825 NCOA3 nuclear receptor coactivator 3 2 2
MIRT503072 C6orf120 chromosome 6 open reading frame 120 2 2
MIRT504755 TEP1 telomerase associated protein 1 2 4
MIRT505971 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT511868 GOLGA7 golgin A7 2 6
MIRT512900 UBL4A ubiquitin like 4A 2 2
MIRT513048 LYPD6 LY6/PLAUR domain containing 6 2 6
MIRT523772 FAM83D family with sequence similarity 83 member D 2 2
MIRT525126 RPS11 ribosomal protein S11 2 2
MIRT525816 VIMP selenoprotein S 2 10
MIRT531222 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT531729 SLC2A9 solute carrier family 2 member 9 2 2
MIRT536282 LIMA1 LIM domain and actin binding 1 2 2
MIRT537291 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT537724 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT547940 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT554177 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT555015 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT576717 Wars tryptophanyl-tRNA synthetase 2 2
MIRT607484 HEBP2 heme binding protein 2 2 2
MIRT610786 KLK2 kallikrein related peptidase 2 2 2
MIRT611491 ZNF440 zinc finger protein 440 2 2
MIRT613986 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT615782 KIAA0319L KIAA0319 like 2 2
MIRT620563 WBSCR27 methyltransferase like 27 2 4
MIRT624157 DGKE diacylglycerol kinase epsilon 2 2
MIRT626088 MKLN1 muskelin 1 2 2
MIRT629481 GSN gelsolin 2 2
MIRT636645 CDK4 cyclin dependent kinase 4 2 2
MIRT638074 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT638442 PLXDC2 plexin domain containing 2 2 2
MIRT641025 KLHL7 kelch like family member 7 2 2
MIRT641539 MOCOS molybdenum cofactor sulfurase 2 2
MIRT643004 ZNF829 zinc finger protein 829 2 2
MIRT643092 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT644979 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT645912 PLXNA3 plexin A3 2 2
MIRT646605 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT648033 FADS6 fatty acid desaturase 6 2 2
MIRT657491 HBEGF heparin binding EGF like growth factor 2 2
MIRT658381 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT659695 CD200 CD200 molecule 2 2
MIRT661276 TEX9 testis expressed 9 2 2
MIRT661348 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662948 JPH2 junctophilin 2 2 2
MIRT663225 PPY pancreatic polypeptide 2 2
MIRT663280 SPN sialophorin 2 2
MIRT663335 ZNF74 zinc finger protein 74 2 2
MIRT664344 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664855 TBRG4 transforming growth factor beta regulator 4 2 2
MIRT665484 VPS53 VPS53, GARP complex subunit 2 2
MIRT666428 SH2B3 SH2B adaptor protein 3 2 2
MIRT668162 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT670170 CCDC142 coiled-coil domain containing 142 2 2
MIRT671277 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT672284 GP2 glycoprotein 2 2 2
MIRT672435 RAB10 RAB10, member RAS oncogene family 2 2
MIRT672646 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672760 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672834 AKR7L aldo-keto reductase family 7 like (gene/pseudogene) 2 2
MIRT672841 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673080 AK1 adenylate kinase 1 2 2
MIRT673148 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673323 THAP1 THAP domain containing 1 2 2
MIRT673893 DCTN6 dynactin subunit 6 2 2
MIRT674182 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT674607 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674740 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675140 MOGAT1 monoacylglycerol O-acyltransferase 1 2 4
MIRT675194 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT675886 SNAP29 synaptosome associated protein 29 2 2
MIRT679163 PSMB2 proteasome subunit beta 2 2 2
MIRT680337 ZNF281 zinc finger protein 281 2 2
MIRT706699 GPR155 G protein-coupled receptor 155 2 2
MIRT706911 THAP6 THAP domain containing 6 2 2
MIRT707880 SLC45A4 solute carrier family 45 member 4 2 2
MIRT709097 SEPT4 septin 4 2 2
MIRT709408 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT710845 FAM210A family with sequence similarity 210 member A 2 2
MIRT711358 VPS8 VPS8, CORVET complex subunit 2 2
MIRT718590 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT723649 RPTN repetin 2 2
MIRT724208 NUP205 nucleoporin 205 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-5691 Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)

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