pre-miRNA Information
pre-miRNA hsa-mir-4708   
Genomic Coordinates chr14: 65335117 - 65335183
Description Homo sapiens miR-4708 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4708-5p
Sequence 9| AGAGAUGCCGCCUUGCUCCUU |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1017378847 9 dbSNP
rs750825813 10 dbSNP
rs1297395738 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC35F6   
Synonyms ANT2BP, C2orf18, TANGO9
Description solute carrier family 35 member F6
Transcript NM_017877   
Expression
Putative miRNA Targets on SLC35F6
3'UTR of SLC35F6
(miRNA target sites are highlighted)
>SLC35F6|NM_017877|3'UTR
   1 GGTTCCCTGGAGGCTTCTACTGCCACCCGGGTGCTCCTTCTCCCTGAGACTGAGGCCACACAGGCTGGTGGGCCCCGAAT
  81 GCCCTATCCCCAAGGCCTCACCCTGTCCCCTCCCTGCAGAACCCCCAGGGCAGCTGCTGCCACAGAAGATAACAACACCC
 161 AAGTCCTCTTTTTCTCACTACCACCTGCAGGGTGGTGTTACCCAGCCCCCACAAGCCTGAGTGCAGTGGCAGACCTCAGC
 241 TCTCTGGACCCCTCCTACAGCACTAGAGCTAAATCATGAAGTTGAATTGTAGGAATTTACCACCGTAGTGTATCTGAATC
 321 ATAAACTAGATTATCATAGTTATCTAGTTTATGAGTCATAAGCTAGATTTGATTCTTCAAAGAAGAAAAGTCAGTGAGCA
 401 AATTTAAACCAGAACTAAGCATTATATTTTCTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTG
 481 CAGTGGCACGATCTCGGCGGCTCACTACAACCTCTGCCTCCCAGGTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAG
 561 CTGGGATTACAGGTGCATAACACACCTGGGTAACTTTTATAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAA
 641 CTCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACACCACACCCAGCCATA
 721 ACTAAGCATTATGTTTTCTAAAACTTCTAAGATCCTCCCTAAACCCGTCTGGAGACATGGGTTTTAGCCCAGACTCTGCC
 801 TCAAACTCATTGTAGCTCCCAGCACATTACCCAGTTGCTCTGGGCCTTGGTGTTATGCTCTGGGAAGTAGATGTTGATGC
 881 TGTGGCCTTAGTGCCTTCTGGCCCCAGCATTCCATGGGCCTGTGATCTTGACCAACCTGAGAAAACAGTAACAGCCCATC
 961 CACTGGAAATACCCCTCTGCCCACAGCACCACCCTTCTGTGCTGTTTTTTTTGTTGTTTGTTTGTTTCTTCTTTTTGAGA
1041 CAGAGTCTTGCTCTGTTGCCACGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCCGCTCCCAGGTTCAAGC
1121 AAGTCCCCTGAGTAGCTGGGACTACAGGCGTGTGCCACCACATCCGGCTAATTTTTTGCATTCTTTAATAGAGACGGGGT
1201 TTTGCCATGTTGGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGGTTAC
1281 AGGCATGAGCCACCACGCCCAGCCTTTTTTTTTTTTTTTTTTTTTTCTTGAGAGACAGGGTCTTGCTCTGTCACCCAGGC
1361 ACAGCTTACTGCAGCCTTGAACTCCTGGGATCAATCAGTCCTCCTGCCTCAGCCTCCCGAGTAGCTAAGACTAACAGGTA
1441 TGTACCACCATGCCTGGTTTATTGTTTTATTTTTTTGGCAGAGATGGGTCTCACTGTGTTGCCCAGGCTGATCTCAAACT
1521 CCTGGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAGACCTGAGCCACCACACCTGGGCAACAG
1601 AGTGAAACCTGTCCCTGTTTTCCTGCTCTTACTCTCACCTCTGAGGCCTCCTCTGCCTGGAAGAGATTACAGGGAAATTC
1681 CAGGCAGCCCTTGTCAATTGTTTTTATGAATTCTTTACCTGTTCCTTTTAAAGACAAGGAAACTGAGGCCCAAAGTTCTA
1761 AGTTGTTTGGCAAATGGAGTCTCCTACCCTCAGCTCCTGCAAGGACCTGGGGGACCCCCAGGTCCAGCAGCCACATGATT
1841 CTGCAGCAGACAGGGACCTAGAGCACATCTGGATCTCAGCCCCACCCCTGGCAACCTGCCTGCCTAGAGAACTCCCAAGA
1921 TGACAGACTAAGTAGGATTCTGCCATTTAGAATAATTCTGGTATCCTGGGCGTTGCGTTAAGTTGCTTAACTTTCATTCT
2001 GTCTTACGATAGTCTTCAGAGGTGGGAACAGATGAAGAAACCATGCCCCAGAGAAGGTTAAGTGACTTCCTCTTTATGGA
2081 GCCAGTGTTCCAACCTAGGTTTGCCTGATACCAGACCTGTGGCCCCACCTCCCATGCAGGTCTCTGTGGGGTCTTTGGGA
2161 TGGATCTCCTAGGGCTGGGCTGGAAGCCTCATGTACTGTTGTCTTCTAGGTAACCACCCTGAAGAGAAGGGGTGGCATCA
2241 GGAACCGCAGGGAACCAAGCAGCCTTTGGTCCAGTGCTGCTCCTTGGAACAGTTGAGTGTGGCCTCAAACCATTCTCCTG
2321 GGTAGCTCAGTCATAAAACACCGAATGCCTGCCTCAAAATAGCCTCTGAGGGAAGGGAGCTGTTGACAAGTGAAGCCCTC
2401 AGGTTGTGTGGGATTCCAGCAGGTTATTACAGCTTGTGGGGGGAGGGAGGGTCCATTCCACCAGCTTTGAATCCCAGGGT
2481 CCCCTCAGCTTCACTGGGCCACAGTGTCTGTCCCAGGAAGAAGCAAATGGACAGTGAGGATGATGGAGAGACTACAGCTG
2561 CCTTGTCTAAAACCTGGGATCTTAAAAGTGTTATTTTGGCTTTTATTTTTTAAAAAAAGAAAAGGAAAATTGGCAATTGT
2641 ATTAATCCATTCTCGAATTGCTGTAAAGAAATACCTGAGACTGGGTAATTTAATTTATAAAGAAAAGAGGTTTAATTGGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uucCUCGU-UCCGCCGUAGaga 5'
             ||| | :||:||||||   
Target 5' gaaGAGAAGGGGTGGCATCagg 3'
2221 - 2242 126.00 -18.32
2
miRNA  3' uucCUCGUUCCGCCGUAGAGa 5'
             |||||   | | ||||| 
Target 5' ctaGAGCACATCTGGATCTCa 3'
1858 - 1878 126.00 -13.10
3
miRNA  3' uuccucguuccgccGUAGAGa 5'
                        |||||| 
Target 5' tcaagcgatcctccCATCTCa 3'
1528 - 1548 120.00 -9.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26799545 8 COSMIC
COSN30472858 25 COSMIC
COSN9998155 31 COSMIC
COSN31577429 38 COSMIC
COSN31541851 52 COSMIC
COSN30118062 72 COSMIC
COSN31589880 135 COSMIC
COSN22322668 247 COSMIC
COSN28890553 277 COSMIC
COSN31518647 358 COSMIC
COSN21148491 861 COSMIC
COSN19310553 973 COSMIC
COSN32161416 1054 COSMIC
COSN20772581 1241 COSMIC
COSN25817432 1284 COSMIC
COSN25649710 1393 COSMIC
COSN28321119 1562 COSMIC
COSN17075809 1873 COSMIC
COSN6177292 1977 COSMIC
COSN9368919 2188 COSMIC
COSN26901114 2575 COSMIC
COSN29961348 2645 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766437801 3 dbSNP
rs1274427607 6 dbSNP
rs749529563 7 dbSNP
rs760085578 8 dbSNP
rs1431828925 9 dbSNP
rs1255186384 11 dbSNP
rs767981392 13 dbSNP
rs201317348 15 dbSNP
rs753182277 17 dbSNP
rs375082105 20 dbSNP
rs948530685 23 dbSNP
rs763805131 27 dbSNP
rs753499182 28 dbSNP
rs1414470991 29 dbSNP
rs559059130 30 dbSNP
rs1224581522 31 dbSNP
rs1230716553 32 dbSNP
rs1270165489 33 dbSNP
rs981259017 34 dbSNP
rs1172283977 36 dbSNP
rs756681672 37 dbSNP
rs756918399 37 dbSNP
rs771366877 38 dbSNP
rs778613105 39 dbSNP
rs745336122 45 dbSNP
rs953849174 70 dbSNP
rs574602217 71 dbSNP
rs1334870776 74 dbSNP
rs905731798 77 dbSNP
rs1002689231 78 dbSNP
rs1160799306 80 dbSNP
rs1465038997 82 dbSNP
rs1035909017 102 dbSNP
rs934585900 103 dbSNP
rs950676094 106 dbSNP
rs983738990 111 dbSNP
rs1260629068 112 dbSNP
rs1052717850 127 dbSNP
rs1464099335 130 dbSNP
rs1286179447 134 dbSNP
rs1167481870 139 dbSNP
rs371539243 141 dbSNP
rs1015938220 149 dbSNP
rs1225161505 150 dbSNP
rs1347578361 151 dbSNP
rs947144879 151 dbSNP
rs1430043367 152 dbSNP
rs1327092992 154 dbSNP
rs1320431514 157 dbSNP
rs778336134 159 dbSNP
rs963038503 160 dbSNP
rs748639844 162 dbSNP
rs541909150 177 dbSNP
rs758858494 186 dbSNP
rs1177550304 193 dbSNP
rs1471173054 199 dbSNP
rs778144478 204 dbSNP
rs1166967369 206 dbSNP
rs1475576059 207 dbSNP
rs1243333164 209 dbSNP
rs1411813500 211 dbSNP
rs889563346 212 dbSNP
rs1243711015 223 dbSNP
rs1205281141 224 dbSNP
rs1315856706 225 dbSNP
rs376698389 226 dbSNP
rs563479596 229 dbSNP
rs1040573770 241 dbSNP
rs955069095 252 dbSNP
rs1405959014 256 dbSNP
rs530775668 261 dbSNP
rs7558945 263 dbSNP
rs146903158 267 dbSNP
rs1382626352 277 dbSNP
rs924077657 292 dbSNP
rs192551091 294 dbSNP
rs760082206 300 dbSNP
rs1398552063 305 dbSNP
rs7421206 306 dbSNP
rs1251324141 312 dbSNP
rs1340863639 314 dbSNP
rs183247497 317 dbSNP
rs565694949 319 dbSNP
rs1023446674 331 dbSNP
rs77595890 335 dbSNP
rs1185356330 337 dbSNP
rs1456444006 339 dbSNP
rs1045146956 343 dbSNP
rs562668661 344 dbSNP
rs7571091 348 dbSNP
rs906636749 362 dbSNP
rs188855311 373 dbSNP
rs1226612007 384 dbSNP
rs569805769 387 dbSNP
rs1358836064 393 dbSNP
rs1315892913 395 dbSNP
rs1331252798 397 dbSNP
rs537685992 401 dbSNP
rs7562031 405 dbSNP
rs1375379688 408 dbSNP
rs573011827 410 dbSNP
rs112024298 411 dbSNP
rs1463621491 424 dbSNP
rs1321178159 427 dbSNP
rs62128384 430 dbSNP
rs10628763 432 dbSNP
rs1164982335 432 dbSNP
rs1355526627 432 dbSNP
rs771958103 432 dbSNP
rs1161631924 434 dbSNP
rs1365243373 435 dbSNP
rs1407198153 436 dbSNP
rs1004842951 437 dbSNP
rs914507876 440 dbSNP
rs1177530987 441 dbSNP
rs1425657792 445 dbSNP
rs78337014 446 dbSNP
rs1359042344 448 dbSNP
rs1220520266 450 dbSNP
rs947019381 450 dbSNP
rs1049410547 451 dbSNP
rs1327625203 452 dbSNP
rs1224879985 454 dbSNP
rs910931659 458 dbSNP
rs1306949501 459 dbSNP
rs571147004 460 dbSNP
rs534975325 466 dbSNP
rs552944896 467 dbSNP
rs993735019 469 dbSNP
rs1048414664 471 dbSNP
rs1417357923 472 dbSNP
rs148364965 475 dbSNP
rs1159762681 476 dbSNP
rs1402436946 481 dbSNP
rs995824939 485 dbSNP
rs1006595976 488 dbSNP
rs1198472493 489 dbSNP
rs1022972390 490 dbSNP
rs1028642152 491 dbSNP
rs954500633 497 dbSNP
rs116386619 499 dbSNP
rs1260587286 500 dbSNP
rs1205608757 503 dbSNP
rs1217108790 510 dbSNP
rs1319299033 515 dbSNP
rs1261639370 523 dbSNP
rs924137541 526 dbSNP
rs1223306155 532 dbSNP
rs1002937271 536 dbSNP
rs1284813941 538 dbSNP
rs1397526380 540 dbSNP
rs957084035 544 dbSNP
rs989718514 545 dbSNP
rs573795706 552 dbSNP
rs1357406240 554 dbSNP
rs948281668 555 dbSNP
rs7571331 556 dbSNP
rs771352993 566 dbSNP
rs1261118842 568 dbSNP
rs927919646 578 dbSNP
rs1487110909 584 dbSNP
rs1975212 595 dbSNP
rs533138277 604 dbSNP
rs886309932 607 dbSNP
rs1224786182 610 dbSNP
rs1004706517 615 dbSNP
rs1037646206 619 dbSNP
rs1306601840 626 dbSNP
rs533788186 628 dbSNP
rs1378810344 632 dbSNP
rs564089991 637 dbSNP
rs1453521733 640 dbSNP
rs1301615245 641 dbSNP
rs868110450 646 dbSNP
rs1028667542 647 dbSNP
rs1408007512 655 dbSNP
rs954489293 660 dbSNP
rs1008688532 661 dbSNP
rs1460642429 666 dbSNP
rs1372746256 670 dbSNP
rs1171182232 671 dbSNP
rs1385015224 687 dbSNP
rs1031153734 690 dbSNP
rs528394486 698 dbSNP
rs1382908815 705 dbSNP
rs989623835 709 dbSNP
rs967709079 711 dbSNP
rs1306675312 713 dbSNP
rs1194488308 720 dbSNP
rs777631307 723 dbSNP
rs1251560855 731 dbSNP
rs192685605 741 dbSNP
rs1239565708 745 dbSNP
rs1262390258 746 dbSNP
rs1482275082 747 dbSNP
rs769872305 749 dbSNP
rs775466551 750 dbSNP
rs1246612698 751 dbSNP
rs1461852312 753 dbSNP
rs1185598816 754 dbSNP
rs887992073 761 dbSNP
rs942331560 764 dbSNP
rs980949666 767 dbSNP
rs1390640524 768 dbSNP
rs1395961747 770 dbSNP
rs761745722 772 dbSNP
rs928024891 777 dbSNP
rs1366041348 778 dbSNP
rs1363786698 779 dbSNP
rs114993459 782 dbSNP
rs1445742167 799 dbSNP
rs1176346111 810 dbSNP
rs1180057130 816 dbSNP
rs905902651 818 dbSNP
rs573611246 827 dbSNP
rs1489756136 835 dbSNP
rs1406128508 849 dbSNP
rs1002842304 852 dbSNP
rs1222619890 855 dbSNP
rs1361460587 864 dbSNP
rs1035714075 867 dbSNP
rs1237988982 873 dbSNP
rs1454140899 877 dbSNP
rs1328846850 880 dbSNP
rs1308968722 882 dbSNP
rs1411865572 886 dbSNP
rs1343926279 892 dbSNP
rs1302574146 896 dbSNP
rs891884997 903 dbSNP
rs1393428253 905 dbSNP
rs1372210251 934 dbSNP
rs982917027 936 dbSNP
rs1364731701 941 dbSNP
rs1308954882 944 dbSNP
rs1479237277 947 dbSNP
rs1267779141 958 dbSNP
rs908603252 964 dbSNP
rs1038554118 968 dbSNP
rs1490701800 970 dbSNP
rs1259129799 971 dbSNP
rs530075320 975 dbSNP
rs1310222554 978 dbSNP
rs548161974 983 dbSNP
rs569843970 987 dbSNP
rs185028965 990 dbSNP
rs1262250205 991 dbSNP
rs1221487108 995 dbSNP
rs898966924 998 dbSNP
rs1321621232 1000 dbSNP
rs200004019 1005 dbSNP
rs187534161 1014 dbSNP
rs965012290 1014 dbSNP
rs976431233 1017 dbSNP
rs1382120992 1023 dbSNP
rs1161781490 1025 dbSNP
rs1386369744 1025 dbSNP
rs918300332 1026 dbSNP
rs1428096518 1030 dbSNP
rs1050770658 1034 dbSNP
rs1176694699 1041 dbSNP
rs1478844508 1042 dbSNP
rs1205691635 1046 dbSNP
rs1191910636 1050 dbSNP
rs890155819 1051 dbSNP
rs1231390056 1052 dbSNP
rs929748733 1064 dbSNP
rs551129328 1079 dbSNP
rs1460714374 1087 dbSNP
rs1008959379 1088 dbSNP
rs570917458 1094 dbSNP
rs942262624 1095 dbSNP
rs535331393 1105 dbSNP
rs1010577693 1106 dbSNP
rs760538280 1107 dbSNP
rs969525127 1112 dbSNP
rs1405808147 1125 dbSNP
rs868736287 1126 dbSNP
rs1337851093 1129 dbSNP
rs938646738 1146 dbSNP
rs753420947 1149 dbSNP
rs981023180 1150 dbSNP
rs1035669765 1151 dbSNP
rs1475458320 1157 dbSNP
rs553752303 1162 dbSNP
rs1181663237 1163 dbSNP
rs568764262 1166 dbSNP
rs12328856 1167 dbSNP
rs1205380317 1172 dbSNP
rs1444290185 1178 dbSNP
rs983207076 1191 dbSNP
rs1299556390 1194 dbSNP
rs1340142988 1195 dbSNP
rs908511618 1196 dbSNP
rs1274797486 1197 dbSNP
rs1244383763 1200 dbSNP
rs1382765549 1213 dbSNP
rs1450675848 1215 dbSNP
rs1365164410 1217 dbSNP
rs1021860906 1219 dbSNP
rs1327779616 1220 dbSNP
rs1283811819 1229 dbSNP
rs1410240725 1229 dbSNP
rs904383163 1235 dbSNP
rs1161171033 1238 dbSNP
rs1007146923 1240 dbSNP
rs941437285 1242 dbSNP
rs1183336992 1257 dbSNP
rs556965625 1259 dbSNP
rs1468423971 1263 dbSNP
rs1270895616 1265 dbSNP
rs191320983 1266 dbSNP
rs920467329 1269 dbSNP
rs1483530116 1273 dbSNP
rs10193936 1277 dbSNP
rs1050386673 1280 dbSNP
rs997816196 1281 dbSNP
rs1205443778 1282 dbSNP
rs1253323613 1284 dbSNP
rs1489956439 1286 dbSNP
rs566353498 1292 dbSNP
rs924889059 1293 dbSNP
rs951202363 1294 dbSNP
rs573000030 1297 dbSNP
rs1270230694 1298 dbSNP
rs1300686090 1299 dbSNP
rs1481738921 1300 dbSNP
rs1192146021 1301 dbSNP
rs62128385 1304 dbSNP
rs1254286628 1305 dbSNP
rs1460451801 1305 dbSNP
rs1473013819 1305 dbSNP
rs75851338 1305 dbSNP
rs777288761 1305 dbSNP
rs80139146 1306 dbSNP
rs1428619101 1311 dbSNP
rs1172058716 1317 dbSNP
rs944609159 1317 dbSNP
rs1347797401 1318 dbSNP
rs867049490 1327 dbSNP
rs183855192 1328 dbSNP
rs1367219480 1331 dbSNP
rs1397992496 1332 dbSNP
rs1269558559 1333 dbSNP
rs983909728 1337 dbSNP
rs892091664 1347 dbSNP
rs148229756 1354 dbSNP
rs1404017181 1363 dbSNP
rs909636836 1364 dbSNP
rs1294820938 1365 dbSNP
rs1010649656 1366 dbSNP
rs1428529818 1371 dbSNP
rs138284304 1388 dbSNP
rs533598244 1389 dbSNP
rs149583653 1390 dbSNP
rs1222201397 1395 dbSNP
rs927516715 1399 dbSNP
rs1174529108 1418 dbSNP
rs1480269788 1419 dbSNP
rs1035171689 1420 dbSNP
rs961262464 1423 dbSNP
rs541844736 1436 dbSNP
rs1193038979 1453 dbSNP
rs1485149002 1453 dbSNP
rs1209677712 1470 dbSNP
rs1242074327 1470 dbSNP
rs1466537571 1473 dbSNP
rs1004436320 1492 dbSNP
rs1490944494 1494 dbSNP
rs1015607727 1499 dbSNP
rs962701566 1502 dbSNP
rs974190557 1509 dbSNP
rs1361107384 1523 dbSNP
rs189306643 1525 dbSNP
rs1485889887 1528 dbSNP
rs913257897 1531 dbSNP
rs531035796 1532 dbSNP
rs575783659 1534 dbSNP
rs552346984 1535 dbSNP
rs1386822195 1575 dbSNP
rs1178272257 1576 dbSNP
rs1417660520 1577 dbSNP
rs954085788 1597 dbSNP
rs1419351727 1600 dbSNP
rs1189774559 1603 dbSNP
rs1345760085 1608 dbSNP
rs1431567534 1612 dbSNP
rs1290771370 1614 dbSNP
rs1241666011 1618 dbSNP
rs986380277 1627 dbSNP
rs1483350380 1628 dbSNP
rs867136597 1629 dbSNP
rs904622616 1629 dbSNP
rs879682815 1633 dbSNP
rs1306402398 1637 dbSNP
rs10186142 1643 dbSNP
rs1230480088 1644 dbSNP
rs944622794 1648 dbSNP
rs1052359593 1652 dbSNP
rs901081413 1653 dbSNP
rs1222462696 1655 dbSNP
rs878892746 1656 dbSNP
rs1380072498 1657 dbSNP
rs998141541 1672 dbSNP
rs1284174779 1688 dbSNP
rs1460708351 1690 dbSNP
rs1025295534 1701 dbSNP
rs13408095 1705 dbSNP
rs946371982 1734 dbSNP
rs1383957990 1741 dbSNP
rs1043480453 1753 dbSNP
rs1424774081 1759 dbSNP
rs146102654 1766 dbSNP
rs1244652243 1769 dbSNP
rs1468384056 1775 dbSNP
rs1274703488 1778 dbSNP
rs181930608 1790 dbSNP
rs1290948806 1795 dbSNP
rs1245169892 1800 dbSNP
rs980233933 1805 dbSNP
rs561436782 1808 dbSNP
rs1389870255 1809 dbSNP
rs896614859 1810 dbSNP
rs1004913832 1811 dbSNP
rs757986368 1813 dbSNP
rs530109676 1816 dbSNP
rs993071892 1817 dbSNP
rs913484980 1820 dbSNP
rs1458927569 1826 dbSNP
rs995524301 1849 dbSNP
rs1157437227 1852 dbSNP
rs1418098863 1853 dbSNP
rs1452069425 1856 dbSNP
rs550600746 1860 dbSNP
rs1252128799 1863 dbSNP
rs1183625304 1868 dbSNP
rs1489644016 1869 dbSNP
rs1028298352 1871 dbSNP
rs1210352712 1880 dbSNP
rs946042534 1881 dbSNP
rs954275331 1887 dbSNP
rs1043451927 1905 dbSNP
rs986861995 1909 dbSNP
rs1440451607 1912 dbSNP
rs1279274696 1916 dbSNP
rs911752734 1918 dbSNP
rs1343715501 1923 dbSNP
rs1323016615 1924 dbSNP
rs1387836094 1929 dbSNP
rs926024528 1933 dbSNP
rs1287446282 1938 dbSNP
rs1457045233 1945 dbSNP
rs942795080 1951 dbSNP
rs1160905329 1963 dbSNP
rs965898764 1967 dbSNP
rs988491068 1972 dbSNP
rs185155788 1973 dbSNP
rs1204269653 1975 dbSNP
rs539410164 1975 dbSNP
rs1046991146 1976 dbSNP
rs746989606 1977 dbSNP
rs1435778442 1980 dbSNP
rs1230430212 1985 dbSNP
rs1180665291 1987 dbSNP
rs557615046 1988 dbSNP
rs1017046173 1989 dbSNP
rs1333268393 1992 dbSNP
rs904940740 2000 dbSNP
rs1197161257 2002 dbSNP
rs572873741 2003 dbSNP
rs1389833382 2004 dbSNP
rs144052229 2006 dbSNP
rs190397606 2008 dbSNP
rs181219623 2009 dbSNP
rs1408938433 2015 dbSNP
rs1467861426 2022 dbSNP
rs555108404 2023 dbSNP
rs937763410 2056 dbSNP
rs140020517 2057 dbSNP
rs560099083 2068 dbSNP
rs1056216125 2071 dbSNP
rs960171600 2072 dbSNP
rs560588778 2083 dbSNP
rs544053527 2086 dbSNP
rs1370900172 2087 dbSNP
rs940191799 2088 dbSNP
rs781563742 2092 dbSNP
rs1450053675 2094 dbSNP
rs563708265 2099 dbSNP
rs968040803 2108 dbSNP
rs1201559143 2123 dbSNP
rs1460117559 2128 dbSNP
rs1278193015 2132 dbSNP
rs1201046777 2149 dbSNP
rs978776101 2151 dbSNP
rs1404454446 2158 dbSNP
rs1228269048 2161 dbSNP
rs898761074 2161 dbSNP
rs925984720 2172 dbSNP
rs942742765 2175 dbSNP
rs1339457974 2180 dbSNP
rs1408353573 2192 dbSNP
rs975522850 2193 dbSNP
rs1328469218 2197 dbSNP
rs995723084 2199 dbSNP
rs1028329325 2204 dbSNP
rs575588175 2209 dbSNP
rs887023658 2214 dbSNP
rs889790302 2219 dbSNP
rs1472351115 2220 dbSNP
rs141994063 2222 dbSNP
rs1008762840 2226 dbSNP
rs1019681878 2227 dbSNP
rs966294866 2242 dbSNP
rs987954180 2247 dbSNP
rs1020716793 2248 dbSNP
rs1336886179 2253 dbSNP
rs941316659 2264 dbSNP
rs967946734 2272 dbSNP
rs1244493703 2274 dbSNP
rs1356091665 2275 dbSNP
rs1038023227 2280 dbSNP
rs1449742349 2286 dbSNP
rs904898759 2288 dbSNP
rs979280071 2294 dbSNP
rs1273300232 2315 dbSNP
rs1001840609 2320 dbSNP
rs1372264453 2321 dbSNP
rs573350670 2328 dbSNP
rs546173516 2334 dbSNP
rs926323008 2336 dbSNP
rs1414211762 2340 dbSNP
rs896241153 2343 dbSNP
rs1014341136 2344 dbSNP
rs527896198 2346 dbSNP
rs1181478758 2364 dbSNP
rs967652616 2366 dbSNP
rs992348203 2368 dbSNP
rs979446588 2371 dbSNP
rs1033001224 2372 dbSNP
rs1290979711 2374 dbSNP
rs186666356 2388 dbSNP
rs1474478990 2393 dbSNP
rs917658336 2395 dbSNP
rs190181817 2396 dbSNP
rs939735226 2399 dbSNP
rs1287335127 2403 dbSNP
rs549551913 2413 dbSNP
rs898623676 2414 dbSNP
rs1351794692 2424 dbSNP
rs1300787727 2436 dbSNP
rs746054284 2437 dbSNP
rs1049997030 2439 dbSNP
rs889812831 2440 dbSNP
rs1411034134 2441 dbSNP
rs982634394 2447 dbSNP
rs1414251560 2449 dbSNP
rs532303311 2449 dbSNP
rs528553542 2478 dbSNP
rs1488416181 2479 dbSNP
rs1247803927 2482 dbSNP
rs1224160898 2485 dbSNP
rs1432016554 2494 dbSNP
rs1267967949 2495 dbSNP
rs1208932779 2503 dbSNP
rs547240385 2506 dbSNP
rs1330833237 2514 dbSNP
rs756155067 2515 dbSNP
rs1218136542 2517 dbSNP
rs1368144923 2519 dbSNP
rs1276530800 2527 dbSNP
rs1365358271 2534 dbSNP
rs1428631145 2544 dbSNP
rs1387601786 2546 dbSNP
rs780126886 2553 dbSNP
rs1457924988 2566 dbSNP
rs1304092480 2569 dbSNP
rs1391151297 2574 dbSNP
rs1324124850 2589 dbSNP
rs1038667707 2590 dbSNP
rs1432683435 2591 dbSNP
rs891892935 2600 dbSNP
rs1448246035 2604 dbSNP
rs749313373 2605 dbSNP
rs1270404830 2616 dbSNP
rs768844989 2620 dbSNP
rs1341108182 2628 dbSNP
rs1209061497 2635 dbSNP
rs1020747767 2637 dbSNP
rs1312261676 2640 dbSNP
rs562219837 2648 dbSNP
rs1226059514 2650 dbSNP
rs1364405899 2651 dbSNP
rs1437012229 2656 dbSNP
rs979353873 2656 dbSNP
rs1301299591 2658 dbSNP
rs1243335781 2664 dbSNP
rs180714237 2668 dbSNP
rs1178383829 2673 dbSNP
rs1428326206 2674 dbSNP
rs1390133651 2680 dbSNP
rs760740353 2684 dbSNP
rs1451705725 2699 dbSNP
rs1254596950 2700 dbSNP
rs1180890961 2702 dbSNP
rs991850665 2708 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuccUCGUUCCGCCGUAGAGa 5'
              ||:||| |  |||||| 
Target 5' ----AGUAAGACUCCAUCUCa 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000344420.5 | 3UTR | AGUAAGACUCCAUCUCAAAAAAAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-4708-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT095681 RBM27 RNA binding motif protein 27 2 4
MIRT104033 USP42 ubiquitin specific peptidase 42 2 6
MIRT114773 CMPK1 cytidine/uridine monophosphate kinase 1 2 2
MIRT246923 CCND1 cyclin D1 2 2
MIRT392569 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT443949 LRIT3 leucine rich repeat, Ig-like and transmembrane domains 3 2 2
MIRT446695 PAPPA pappalysin 1 2 2
MIRT447383 VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 2 2
MIRT449321 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449717 C1orf61 chromosome 1 open reading frame 61 2 2
MIRT449738 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT450531 PGLS 6-phosphogluconolactonase 2 2
MIRT455650 YARS tyrosyl-tRNA synthetase 2 2
MIRT458036 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT463468 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT466677 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 4
MIRT467789 SLC2A14 solute carrier family 2 member 14 2 2
MIRT468167 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT468652 SECISBP2L SECIS binding protein 2 like 2 6
MIRT469380 RER1 retention in endoplasmic reticulum sorting receptor 1 2 2
MIRT470346 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT472418 NCKAP1 NCK associated protein 1 2 2
MIRT474612 KLF3 Kruppel like factor 3 2 2
MIRT478703 CSRNP2 cysteine and serine rich nuclear protein 2 2 2
MIRT481008 BBC3 BCL2 binding component 3 2 4
MIRT483098 TFPI tissue factor pathway inhibitor 2 2
MIRT485113 SHISA6 shisa family member 6 2 2
MIRT497533 ZNF607 zinc finger protein 607 2 2
MIRT500644 TUBB2A tubulin beta 2A class IIa 2 6
MIRT500890 STRN striatin 2 4
MIRT501900 MED13 mediator complex subunit 13 2 2
MIRT506646 MAPK1 mitogen-activated protein kinase 1 2 4
MIRT512675 ENO4 enolase family member 4 2 2
MIRT516977 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT528754 RPS27 ribosomal protein S27 2 6
MIRT539670 ZBTB44 zinc finger and BTB domain containing 44 2 2
MIRT544129 PPIL1 peptidylprolyl isomerase like 1 2 2
MIRT546382 STOX2 storkhead box 2 2 4
MIRT562143 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568713 TMEM30B transmembrane protein 30B 2 2
MIRT571029 CENPP centromere protein P 2 2
MIRT572781 ZNF277 zinc finger protein 277 2 2
MIRT573162 SLC30A9 solute carrier family 30 member 9 2 2
MIRT609126 NUDT3 nudix hydrolase 3 2 2
MIRT609284 OAS3 2'-5'-oligoadenylate synthetase 3 2 2
MIRT613430 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT613770 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT616645 LRAT lecithin retinol acyltransferase 2 4
MIRT630892 SLC25A33 solute carrier family 25 member 33 2 2
MIRT636526 FAXC failed axon connections homolog 2 4
MIRT641394 NUBPL nucleotide binding protein like 2 2
MIRT641412 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT642528 CERS4 ceramide synthase 4 2 2
MIRT643186 HYPK huntingtin interacting protein K 2 2
MIRT647800 FRMD8 FERM domain containing 8 2 2
MIRT652150 TRIM71 tripartite motif containing 71 2 2
MIRT652602 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT661606 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT666339 SKAP2 src kinase associated phosphoprotein 2 2 2
MIRT670414 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671122 ZNF573 zinc finger protein 573 2 2
MIRT671155 ANKRD9 ankyrin repeat domain 9 2 2
MIRT671338 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT671869 ZNF429 zinc finger protein 429 2 2
MIRT671974 IKZF3 IKAROS family zinc finger 3 2 2
MIRT672064 KIAA0930 KIAA0930 2 2
MIRT672654 SLC25A16 solute carrier family 25 member 16 2 4
MIRT672673 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT672771 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672929 LRRC2 leucine rich repeat containing 2 2 2
MIRT673159 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673272 RUNDC1 RUN domain containing 1 2 2
MIRT673332 THAP1 THAP domain containing 1 2 2
MIRT673351 SLC35F6 solute carrier family 35 member F6 2 2
MIRT673667 ZNF440 zinc finger protein 440 2 2
MIRT673904 DCTN6 dynactin subunit 6 2 2
MIRT674096 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674401 MYCBP MYC binding protein 2 2
MIRT674525 PRR23A proline rich 23A 2 2
MIRT674793 NPR1 natriuretic peptide receptor 1 2 2
MIRT674833 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 2
MIRT675066 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT675080 CCR6 C-C motif chemokine receptor 6 2 2
MIRT675126 FSD2 fibronectin type III and SPRY domain containing 2 2 2
MIRT679401 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT689229 RPS19 ribosomal protein S19 2 2
MIRT694008 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT699671 SFT2D2 SFT2 domain containing 2 2 2
MIRT706213 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT706548 GJD2 gap junction protein delta 2 2 2
MIRT707418 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT710648 GLUL glutamate-ammonia ligase 2 2
MIRT719393 NPCA1 Nasopharyngeal carcinoma 1 2 2
MIRT720166 PNPO pyridoxamine 5'-phosphate oxidase 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4708-5p Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4708-5p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-4708-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4708-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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