pre-miRNA Information
pre-miRNA hsa-mir-4707   
Genomic Coordinates chr14: 22956950 - 22957029
Description Homo sapiens miR-4707 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4707-3p
Sequence 52| AGCCCGCCCCAGCCGAGGUUCU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1180125593 2 dbSNP
rs1390998288 5 dbSNP
rs2273626 6 dbSNP
rs765507627 7 dbSNP
rs1299611135 9 dbSNP
rs1158707105 11 dbSNP
rs535691977 15 dbSNP
rs952013388 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TNFAIP8L1   
Synonyms TIPE1
Description TNF alpha induced protein 8 like 1
Transcript NM_001167942   
Other Transcripts NM_152362   
Expression
Putative miRNA Targets on TNFAIP8L1
3'UTR of TNFAIP8L1
(miRNA target sites are highlighted)
>TNFAIP8L1|NM_001167942|3'UTR
   1 ACCCCGGCGCCGCCCAACCGCGCCCCTCGCGCCTTTTGGGGCTCTCCTGCTGGGCGCGGGTGGGGTTTGTGGGTTTTTTT
  81 CCACCTCTTTTCTCCCAATCGGACTCCGGCCAAACTCCCCTAGACAGATGGGTGACCTGTCTCCTTTGAGAGGATGCTGA
 161 GGCATCTGTAGCAGCTGTTTCAAACACCAATGTCACCTCTCCTCCTGGCCCCCGCCCAATGGGGAGAGGAATTTGGGGCC
 241 CTACTCTGGGGACCACCTTTCACCCGTTTGTACTTTCTGGGCCACGCCGACCCCTGGGTCGCTTGATGTAAAAGCCAAAA
 321 GCTGCTGCCTCCCACTTGGATCATGTCGCCTGGGATTTTCATCCCTCGCACAAGGACTACGGGTTCACACGGTGAACTGG
 401 GGGAAGGGAAGTGTTAGGGGGCAAGTCGCGGCACCCCCCCTTCCATAAACTCACGTCCTAACCCCCAGGACCTCAGAAGA
 481 TGATCTGATTTGGAAATAGGATCATTACAGATGGAATTAGTTCAGATGATCTCATCTTGGAGTAGGGTGGGCCCCAATTC
 561 AAGGACTGGGGTCCTTAAAAAAAGGGGGCCTGGGGCAGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGC
 641 TGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTGAAAATACA
 721 AAAAATTAGCTGGGCATGGTGGCACATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGATAATCACTTGAACCAG
 801 GAGGAGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAA
 881 GAAGCGGGGGAGTGGGGGATTGAGGCCACGTGCAGTGGCTCACTACTCTAATTCCAGCACTTTGGGAGGCCGAGGCAGGA
 961 AGATTGCTTGAACTCAGAAGTTCAAGACCAGTCTGGGCAACATGGTGAGACCCTCGTCTCTACAAAAAAAAAATTATCGT
1041 GGTGGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACAAGGTCAAGAGA
1121 TCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGTTGCGTGCC
1201 TGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGCAGGTTGCAGGGAGGCGGAGGTT
1281 GCAGTGAGCCGAGATTGCACCACTGCACTTCAGCCTGGTGACAGAGCGAGACTCGTCTCAAAAAAAAAAAAAAAAAAAAA
1361 AAAAAAAGTGACTGTGGTGGTGCACACGTATAATCCCAGCTACTTGAGAGATGACGAGGGAAGATCACTTGAGCCCAGGA
1441 GTTAAGAGGCTGCAGTGACCGATGATCATGCCACTGCACTCCAGCTTGGGTGAGAGTGGGACTCTGTCTTAGAAAGAAAA
1521 AAAAAAGTATTTGGACACAGACATGCATGCAAGGAAGGCCAATGATGCCGGCCACCACCAGGAGCTGGGAGAGGCCCAGG
1601 GCAGATCCCCTTCAGCCTTGGAGGGACCTAGCCCTGGCCACACCTTCATCTCAGACTTGCGGCCCAGAGAACTGAATGAG
1681 AATAAATGTGCGTGAAGCCCCTCAGTCCACAGGATGTGGTACTGGAAGCCCCCACTCAAGAAGGCTCCAGTGAATGCTGG
1761 CACGTTCAGCCAGGATGCCTCCGTGAAGCTGGAGACCTCTGCCCTGGGTCGGGAGGGGAAACTGCTCCAATCCAGGGACT
1841 GCCACATGGGAGGGGACGGAGCGTGCCCACCTCCCAGGGGTGAGGGGGGACCCACCTGAGATGTGTGCACATTTTATTTA
1921 TTTATTGTTTTGAGACAAAGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGTGAAATCTCGGCTCATTGCAGCCCCTT
2001 CCTTCCAGGCTCAAGTGATCCTCCCACCTCAGCCCCGGGTAGCTGGGACTACAGGTGTGCACGAGCACACCCGGCTAATC
2081 TTTGTATTTTTTGTAGACAGAAGGTCTCACCATGTTGCCCAGGATGGTCTCGAACTCCTGGGCTCAAGCGACCTACCTAC
2161 CTCGGCCTCACAAAGTGTGCACATTGTAATATCGTGATTTCATATTTGGAGAATCAGCAACCAACCAGCCAACCATGTTG
2241 CTTTTATAAGACAGAGCTGAGAAAGCAAAGCTTGGCTGTCGTCTTGGCTCTGGTACCACCCACGAGATGCGGGCGATTCT
2321 CAGCTCAGGGCGTGGAGGCGTGGTGTGGGGGAGTCTATTTGCCATTTTTGTTTGTCAGCAGGGGGCAGGGGTTCTCAAAG
2401 ATTGCAAAATGCTGCTGCAGGTCAGGAAGGTTATTTTGGGTGCCTGTGGGGGAGGTGAAACAAGGTCCCATGACTGTTTT
2481 GCAGAACCTTGTCTGTGGAGGGTAGAGGTTGCGGCAGGGGCCTGTGGGCCTTACTTGGTGAGAAGGTAGGTCTAGCTGGC
2561 TCCATTCAGTATTTGAGACATTTGGAATTTGTCTGCATTTAAAACCAAGAGATCACACACACCTGTCTGGATTTGGAGTT
2641 TCTCTTGAAAACTCGCCAGTCCGGCCGTCTGAGCCTGCACTGACGCCTGGTGAAGCTGTGCAGGGGCCGCCCCTCTCCCT
2721 TTCACCACAGTCCTCTCCACTCCCTTTCGCCTCTCCCTGGCCTGCTGCACTCACTGATAGGAAATTCTGACCCCAGACTC
2801 GGAGCAGCCTTCCCGTGGTTCGGTTTTTGCTTCCGCGAAAAAGCCAAAGGCCTTGGCCAGAGAGCCAGCTGTTCCTACCT
2881 CTACCCCACGCTTCCAAGGCAACCTTCTCCACTTATCTTAGGCCGAGAGACAGCTCTTCAAGAACGTACATGGATCCTGA
2961 TTTTCTCACGAAGTCCCGATGGAACCCTGTGCTGTTGAGACATCAGTGTGTAAAACTCTCTGTGTCCCTGTTGGGCTGTC
3041 CAGACAGTCTGGACTCTTGTAAATTTGAGATTTAATTAAAGGAAACAAACCAAATAGGACTGCGGAACAATTTAAATAAA
3121 AGCACACACCAGCCTGGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucuUGGAG----CCGACCCCGCCCGa 5'
             ||:|:    ||||| ||||||| 
Target 5' agcACTTTGAGAGGCTGAGGCGGGCg 3'
626 - 651 165.00 -25.30
2
miRNA  3' ucuUGGAG----CCGACCCCGCCCGa 5'
             ||:|:    ||||| ||||||| 
Target 5' agcACTTTGGGAGGCTGAGGCGGGCa 3'
1077 - 1102 165.00 -25.60
3
miRNA  3' ucuUGGAGCC-GACCCCGCCCGa 5'
             |:||:||  | |||:|||| 
Target 5' ctcATCTTGGAGTAGGGTGGGCc 3'
531 - 553 147.00 -25.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19406074 23 COSMIC
COSN26573495 214 COSMIC
COSN15010278 224 COSMIC
COSN30138827 275 COSMIC
COSN31583078 301 COSMIC
COSN30175720 329 COSMIC
COSN22406178 368 COSMIC
COSN26567197 381 COSMIC
COSN31514733 392 COSMIC
COSN30112566 455 COSMIC
COSN24037538 473 COSMIC
COSN31489690 505 COSMIC
COSN30174397 524 COSMIC
COSN31533063 584 COSMIC
COSN8261118 584 COSMIC
COSN26571675 598 COSMIC
COSN26505463 603 COSMIC
COSN26582481 604 COSMIC
COSN30161478 647 COSMIC
COSN30129848 648 COSMIC
COSN25852800 666 COSMIC
COSN31519235 728 COSMIC
COSN8605988 746 COSMIC
COSN30526956 769 COSMIC
COSN505792 811 COSMIC
COSN30118753 912 COSMIC
COSN28770190 929 COSMIC
COSN26648881 934 COSMIC
COSN15626753 946 COSMIC
COSN30127442 946 COSMIC
COSN31531157 973 COSMIC
COSN28803224 979 COSMIC
COSN30120070 1048 COSMIC
COSN21673225 1137 COSMIC
COSN31932930 1259 COSMIC
COSN24645896 1699 COSMIC
COSN16465191 2079 COSMIC
COSN26121773 2312 COSMIC
COSN19295049 2877 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1162870531 3 dbSNP
rs1347165867 4 dbSNP
rs531789103 8 dbSNP
rs1288344304 9 dbSNP
rs1359213198 11 dbSNP
rs779515578 12 dbSNP
rs542350343 13 dbSNP
rs1483751324 14 dbSNP
rs1480218878 18 dbSNP
rs988784929 20 dbSNP
rs1226952662 21 dbSNP
rs562205943 22 dbSNP
rs529897740 23 dbSNP
rs1261568577 26 dbSNP
rs915435391 29 dbSNP
rs1258380715 30 dbSNP
rs1486627550 31 dbSNP
rs546508030 32 dbSNP
rs1264429633 37 dbSNP
rs747318018 43 dbSNP
rs1484599030 45 dbSNP
rs945678754 55 dbSNP
rs776403010 57 dbSNP
rs566746029 59 dbSNP
rs1474381565 65 dbSNP
rs926676618 66 dbSNP
rs1432770164 74 dbSNP
rs1469380895 74 dbSNP
rs569352885 74 dbSNP
rs939358271 74 dbSNP
rs933083136 75 dbSNP
rs1056369579 81 dbSNP
rs897750338 87 dbSNP
rs1007165569 89 dbSNP
rs1323424000 90 dbSNP
rs1397161009 98 dbSNP
rs532320919 99 dbSNP
rs551727332 101 dbSNP
rs994202012 102 dbSNP
rs1025647986 108 dbSNP
rs1049434870 109 dbSNP
rs1325266840 119 dbSNP
rs568516751 126 dbSNP
rs1007768439 130 dbSNP
rs1361451995 132 dbSNP
rs1315647402 133 dbSNP
rs1270885029 135 dbSNP
rs981535486 137 dbSNP
rs1355680521 138 dbSNP
rs1017365652 145 dbSNP
rs1331054446 147 dbSNP
rs1392152221 161 dbSNP
rs1396108075 162 dbSNP
rs1386333290 163 dbSNP
rs537507312 163 dbSNP
rs1163521671 165 dbSNP
rs914455511 166 dbSNP
rs945961486 171 dbSNP
rs977098861 172 dbSNP
rs1250654015 176 dbSNP
rs878879350 186 dbSNP
rs1202675879 191 dbSNP
rs148604930 192 dbSNP
rs965760765 196 dbSNP
rs1275214232 198 dbSNP
rs1469652749 199 dbSNP
rs1292297598 200 dbSNP
rs922945488 208 dbSNP
rs1214165081 209 dbSNP
rs933095946 209 dbSNP
rs142984070 210 dbSNP
rs1239892658 214 dbSNP
rs1335358167 217 dbSNP
rs568089403 220 dbSNP
rs1031369882 221 dbSNP
rs955879489 230 dbSNP
rs1407086545 247 dbSNP
rs1366569268 251 dbSNP
rs889952260 259 dbSNP
rs747430094 262 dbSNP
rs867365895 267 dbSNP
rs1195195872 268 dbSNP
rs988449979 272 dbSNP
rs942809673 275 dbSNP
rs1159752062 279 dbSNP
rs915470262 286 dbSNP
rs1373176071 289 dbSNP
rs1038536242 290 dbSNP
rs968252732 293 dbSNP
rs1179548885 304 dbSNP
rs898787554 316 dbSNP
rs1269299447 317 dbSNP
rs1220622130 328 dbSNP
rs1449750164 335 dbSNP
rs1286300265 341 dbSNP
rs994402335 343 dbSNP
rs28564725 345 dbSNP
rs117764185 348 dbSNP
rs1225579432 349 dbSNP
rs752000605 352 dbSNP
rs1419665812 365 dbSNP
rs189850581 366 dbSNP
rs1282984390 368 dbSNP
rs1434798782 369 dbSNP
rs1347392560 373 dbSNP
rs1003389742 375 dbSNP
rs1060555 381 dbSNP
rs958794654 382 dbSNP
rs1011398615 385 dbSNP
rs1429586637 387 dbSNP
rs746107100 391 dbSNP
rs1476922077 392 dbSNP
rs1243720538 397 dbSNP
rs1384451723 399 dbSNP
rs1464440551 401 dbSNP
rs1266291230 404 dbSNP
rs1021413724 412 dbSNP
rs1324486889 428 dbSNP
rs1319501836 430 dbSNP
rs929297913 431 dbSNP
rs967293451 434 dbSNP
rs977297060 434 dbSNP
rs1339954806 435 dbSNP
rs922944230 436 dbSNP
rs954363021 438 dbSNP
rs1470689539 439 dbSNP
rs1231454612 440 dbSNP
rs1412461459 441 dbSNP
rs1295195425 442 dbSNP
rs1335797547 446 dbSNP
rs1049008282 456 dbSNP
rs1227987929 463 dbSNP
rs1185421109 468 dbSNP
rs910334247 471 dbSNP
rs1208273823 475 dbSNP
rs1259961351 475 dbSNP
rs768145508 476 dbSNP
rs1348221975 479 dbSNP
rs887648828 484 dbSNP
rs1340613966 501 dbSNP
rs1262262316 509 dbSNP
rs1317785976 510 dbSNP
rs1485301989 512 dbSNP
rs1038571732 517 dbSNP
rs1379249708 521 dbSNP
rs920077874 522 dbSNP
rs930223848 534 dbSNP
rs943200148 538 dbSNP
rs1170829582 539 dbSNP
rs1428873978 545 dbSNP
rs1038855675 546 dbSNP
rs901662406 548 dbSNP
rs1258979774 549 dbSNP
rs1445231699 568 dbSNP
rs1255515774 570 dbSNP
rs1180238873 577 dbSNP
rs181793641 578 dbSNP
rs1031834742 584 dbSNP
rs1056191777 586 dbSNP
rs1294479918 588 dbSNP
rs891494778 589 dbSNP
rs542293010 593 dbSNP
rs1455616125 598 dbSNP
rs769855706 602 dbSNP
rs1011625039 603 dbSNP
rs376761474 604 dbSNP
rs141421167 605 dbSNP
rs1308275406 612 dbSNP
rs968682484 614 dbSNP
rs1413456404 615 dbSNP
rs527820341 628 dbSNP
rs1425194486 631 dbSNP
rs1033839855 636 dbSNP
rs1162727088 638 dbSNP
rs1420964030 639 dbSNP
rs1408918559 640 dbSNP
rs186595311 645 dbSNP
rs560112506 647 dbSNP
rs992244588 648 dbSNP
rs1223755170 650 dbSNP
rs113311345 651 dbSNP
rs1261083356 652 dbSNP
rs1218667217 658 dbSNP
rs1347123591 659 dbSNP
rs982592698 663 dbSNP
rs999179985 665 dbSNP
rs1208600534 666 dbSNP
rs552064009 672 dbSNP
rs1284902848 673 dbSNP
rs568854285 675 dbSNP
rs1387171866 680 dbSNP
rs1485684814 687 dbSNP
rs1176279886 690 dbSNP
rs190560850 692 dbSNP
rs985170328 693 dbSNP
rs183587050 704 dbSNP
rs1377399831 711 dbSNP
rs1433439007 713 dbSNP
rs143839515 722 dbSNP
rs963152760 736 dbSNP
rs973120181 737 dbSNP
rs1038950117 738 dbSNP
rs1486500480 751 dbSNP
rs901716098 756 dbSNP
rs1375875246 760 dbSNP
rs930091306 769 dbSNP
rs1264625554 774 dbSNP
rs933131673 777 dbSNP
rs1052882042 783 dbSNP
rs1047771663 786 dbSNP
rs891500144 787 dbSNP
rs1232017085 792 dbSNP
rs1365904846 798 dbSNP
rs1319917199 815 dbSNP
rs1305459513 823 dbSNP
rs1011260340 824 dbSNP
rs533671572 828 dbSNP
rs1249095256 831 dbSNP
rs1481437841 832 dbSNP
rs905525023 833 dbSNP
rs572478317 841 dbSNP
rs1173047171 842 dbSNP
rs1033892381 843 dbSNP
rs894470629 848 dbSNP
rs1196064974 849 dbSNP
rs1187315729 850 dbSNP
rs1463173401 853 dbSNP
rs1244512024 856 dbSNP
rs947489777 857 dbSNP
rs754131158 862 dbSNP
rs992703765 864 dbSNP
rs1229372003 865 dbSNP
rs1342738952 866 dbSNP
rs112877986 867 dbSNP
rs998731107 868 dbSNP
rs950830950 869 dbSNP
rs984877151 870 dbSNP
rs909226469 883 dbSNP
rs1007876316 885 dbSNP
rs1356325607 886 dbSNP
rs72620519 887 dbSNP
rs1390040437 891 dbSNP
rs974691237 895 dbSNP
rs540077883 905 dbSNP
rs188721849 906 dbSNP
rs111777530 910 dbSNP
rs771786256 911 dbSNP
rs780106333 926 dbSNP
rs4806994 929 dbSNP
rs950440743 933 dbSNP
rs1213895351 944 dbSNP
rs866939306 945 dbSNP
rs374587016 952 dbSNP
rs1361561182 953 dbSNP
rs1284801055 955 dbSNP
rs1042795459 956 dbSNP
rs1308700119 964 dbSNP
rs113650575 965 dbSNP
rs9783964 979 dbSNP
rs1466858607 985 dbSNP
rs1331148816 990 dbSNP
rs1410732901 991 dbSNP
rs911538198 993 dbSNP
rs1306613622 1003 dbSNP
rs1216006014 1010 dbSNP
rs1253998694 1012 dbSNP
rs938977351 1017 dbSNP
rs1185251313 1019 dbSNP
rs771057903 1021 dbSNP
rs1366262036 1022 dbSNP
rs915932192 1024 dbSNP
rs947354159 1024 dbSNP
rs1429136691 1032 dbSNP
rs116388380 1035 dbSNP
rs1209252987 1038 dbSNP
rs1416046650 1039 dbSNP
rs1463194952 1040 dbSNP
rs1350160004 1041 dbSNP
rs1286793765 1046 dbSNP
rs868691614 1049 dbSNP
rs1051633422 1050 dbSNP
rs1429967034 1053 dbSNP
rs1286990801 1054 dbSNP
rs1160807022 1064 dbSNP
rs1457394890 1066 dbSNP
rs560255124 1070 dbSNP
rs140499998 1093 dbSNP
rs545621054 1098 dbSNP
rs1292118136 1099 dbSNP
rs1017492999 1103 dbSNP
rs1198077524 1110 dbSNP
rs529460475 1117 dbSNP
rs549414841 1121 dbSNP
rs898841303 1122 dbSNP
rs150421539 1123 dbSNP
rs1025983533 1124 dbSNP
rs1368740965 1136 dbSNP
rs1274674075 1140 dbSNP
rs950520839 1144 dbSNP
rs1328730916 1145 dbSNP
rs1244269508 1147 dbSNP
rs1321919234 1154 dbSNP
rs1435187605 1155 dbSNP
rs1156487271 1157 dbSNP
rs1055314171 1168 dbSNP
rs1171837785 1171 dbSNP
rs547754702 1171 dbSNP
rs767762339 1172 dbSNP
rs1249854387 1173 dbSNP
rs569493376 1182 dbSNP
rs183290135 1183 dbSNP
rs760047615 1191 dbSNP
rs1246333461 1192 dbSNP
rs1414278454 1194 dbSNP
rs1212470344 1196 dbSNP
rs1013774712 1197 dbSNP
rs1399833189 1204 dbSNP
rs547165742 1206 dbSNP
rs1346956808 1209 dbSNP
rs1035878030 1213 dbSNP
rs558883177 1218 dbSNP
rs991705320 1222 dbSNP
rs1318007210 1236 dbSNP
rs1449742615 1237 dbSNP
rs916195730 1240 dbSNP
rs950901426 1241 dbSNP
rs753299592 1243 dbSNP
rs1412550976 1245 dbSNP
rs1169131111 1250 dbSNP
rs1293463967 1250 dbSNP
rs1016356013 1255 dbSNP
rs964710086 1257 dbSNP
rs1222489149 1259 dbSNP
rs570571696 1263 dbSNP
rs974707590 1274 dbSNP
rs538528978 1275 dbSNP
rs954587066 1276 dbSNP
rs988725369 1282 dbSNP
rs796788110 1285 dbSNP
rs1210752685 1286 dbSNP
rs1379364996 1287 dbSNP
rs1283253631 1291 dbSNP
rs913084134 1292 dbSNP
rs947231702 1302 dbSNP
rs111281567 1305 dbSNP
rs924599426 1310 dbSNP
rs1043236237 1315 dbSNP
rs934775150 1319 dbSNP
rs1424486939 1326 dbSNP
rs927004604 1328 dbSNP
rs1180330649 1329 dbSNP
rs550432542 1335 dbSNP
rs1232593580 1336 dbSNP
rs1204923191 1338 dbSNP
rs1223057678 1339 dbSNP
rs1231049803 1339 dbSNP
rs1288614363 1339 dbSNP
rs1321783298 1339 dbSNP
rs1351969097 1339 dbSNP
rs1482337709 1339 dbSNP
rs1491229813 1339 dbSNP
rs1181827261 1340 dbSNP
rs1211310787 1340 dbSNP
rs1227463374 1340 dbSNP
rs1264297164 1340 dbSNP
rs1268383495 1340 dbSNP
rs1269994375 1340 dbSNP
rs1314904317 1340 dbSNP
rs1318946566 1340 dbSNP
rs1330688681 1340 dbSNP
rs1349339906 1340 dbSNP
rs1376448201 1340 dbSNP
rs1413017395 1340 dbSNP
rs1458974801 1340 dbSNP
rs1471825384 1340 dbSNP
rs1488464561 1340 dbSNP
rs1491114163 1340 dbSNP
rs1491464616 1340 dbSNP
rs74173015 1340 dbSNP
rs1491279375 1341 dbSNP
rs1387258705 1368 dbSNP
rs1468789175 1369 dbSNP
rs1175315190 1370 dbSNP
rs1409850247 1371 dbSNP
rs1323928674 1373 dbSNP
rs1437372487 1374 dbSNP
rs1389586832 1378 dbSNP
rs937013035 1386 dbSNP
rs570333962 1388 dbSNP
rs895470027 1389 dbSNP
rs1379705577 1406 dbSNP
rs755903086 1414 dbSNP
rs765477848 1415 dbSNP
rs1177272138 1416 dbSNP
rs1373107046 1417 dbSNP
rs149147089 1439 dbSNP
rs1038880045 1447 dbSNP
rs1047969978 1453 dbSNP
rs886646392 1455 dbSNP
rs1248179442 1459 dbSNP
rs111329089 1460 dbSNP
rs1353619046 1461 dbSNP
rs1041838599 1462 dbSNP
rs866022167 1464 dbSNP
rs1281679352 1471 dbSNP
rs572358526 1473 dbSNP
rs996197025 1474 dbSNP
rs1301176514 1475 dbSNP
rs535060151 1498 dbSNP
rs1230601368 1502 dbSNP
rs994739184 1503 dbSNP
rs1320025234 1505 dbSNP
rs1301798038 1511 dbSNP
rs1047461187 1512 dbSNP
rs1350681502 1513 dbSNP
rs1211762571 1516 dbSNP
rs1303717567 1516 dbSNP
rs1171028674 1517 dbSNP
rs1465863429 1517 dbSNP
rs886078522 1517 dbSNP
rs1272350098 1518 dbSNP
rs557968205 1524 dbSNP
rs775441250 1526 dbSNP
rs1035145175 1528 dbSNP
rs954719252 1529 dbSNP
rs1426327275 1537 dbSNP
rs58132873 1544 dbSNP
rs1234419943 1546 dbSNP
rs1440017119 1549 dbSNP
rs1200762772 1561 dbSNP
rs1192935830 1563 dbSNP
rs913143376 1564 dbSNP
rs1023067913 1568 dbSNP
rs968957170 1570 dbSNP
rs1296913434 1571 dbSNP
rs1225337141 1588 dbSNP
rs545558005 1592 dbSNP
rs1455519580 1593 dbSNP
rs1172701116 1595 dbSNP
rs978954487 1597 dbSNP
rs1395733023 1601 dbSNP
rs978529598 1608 dbSNP
rs146327896 1611 dbSNP
rs1430899778 1616 dbSNP
rs937117680 1623 dbSNP
rs1407889607 1624 dbSNP
rs1330413206 1627 dbSNP
rs992526045 1629 dbSNP
rs916949110 1637 dbSNP
rs1401495970 1638 dbSNP
rs1187814371 1642 dbSNP
rs1474701771 1656 dbSNP
rs911999117 1657 dbSNP
rs541764687 1661 dbSNP
rs943432554 1662 dbSNP
rs1324290244 1677 dbSNP
rs1038909281 1687 dbSNP
rs1048451556 1691 dbSNP
rs886660074 1692 dbSNP
rs1269709890 1693 dbSNP
rs942205771 1701 dbSNP
rs1047657948 1702 dbSNP
rs1337479345 1711 dbSNP
rs562052586 1717 dbSNP
rs8110873 1722 dbSNP
rs754372488 1723 dbSNP
rs1273893357 1725 dbSNP
rs547395941 1734 dbSNP
rs1468199207 1738 dbSNP
rs1407643399 1745 dbSNP
rs1314509155 1758 dbSNP
rs1392225998 1764 dbSNP
rs1212896534 1765 dbSNP
rs138980142 1773 dbSNP
rs1056128225 1782 dbSNP
rs186504990 1783 dbSNP
rs1030411427 1792 dbSNP
rs1011935208 1795 dbSNP
rs1199437455 1797 dbSNP
rs1241038938 1799 dbSNP
rs1179532827 1800 dbSNP
rs1474106813 1801 dbSNP
rs59683989 1805 dbSNP
rs1023100459 1811 dbSNP
rs890490078 1812 dbSNP
rs1213176654 1813 dbSNP
rs968833943 1828 dbSNP
rs1270266883 1841 dbSNP
rs191436182 1845 dbSNP
rs1328902677 1846 dbSNP
rs1010196245 1853 dbSNP
rs1278189120 1854 dbSNP
rs750637576 1858 dbSNP
rs1000407400 1859 dbSNP
rs1032304760 1863 dbSNP
rs1323604536 1864 dbSNP
rs956308263 1866 dbSNP
rs1391719974 1867 dbSNP
rs1397094989 1868 dbSNP
rs1020626150 1872 dbSNP
rs1160914069 1875 dbSNP
rs1387886986 1876 dbSNP
rs968632885 1880 dbSNP
rs978634210 1888 dbSNP
rs1156614823 1890 dbSNP
rs1034177001 1895 dbSNP
rs1478945257 1897 dbSNP
rs1378141673 1901 dbSNP
rs1193026021 1907 dbSNP
rs1467184098 1908 dbSNP
rs531926083 1912 dbSNP
rs1245842337 1913 dbSNP
rs1282539961 1913 dbSNP
rs992578286 1913 dbSNP
rs1274760867 1917 dbSNP
rs570266394 1917 dbSNP
rs1232821902 1929 dbSNP
rs1368106817 1937 dbSNP
rs1322027424 1940 dbSNP
rs1435302410 1941 dbSNP
rs550319054 1942 dbSNP
rs549404434 1945 dbSNP
rs566412176 1946 dbSNP
rs1172934428 1949 dbSNP
rs1452548821 1959 dbSNP
rs983397616 1960 dbSNP
rs1189326074 1964 dbSNP
rs779690911 1965 dbSNP
rs908138376 1966 dbSNP
rs907820686 1971 dbSNP
rs942321558 1981 dbSNP
rs1212579910 1983 dbSNP
rs1037944304 1984 dbSNP
rs900704106 1990 dbSNP
rs1344963936 1992 dbSNP
rs1299125823 1997 dbSNP
rs1358140933 1999 dbSNP
rs1268033667 2008 dbSNP
rs747003484 2012 dbSNP
rs768504363 2017 dbSNP
rs894778917 2018 dbSNP
rs947824828 2022 dbSNP
rs1051850910 2032 dbSNP
rs1043417452 2037 dbSNP
rs184691844 2038 dbSNP
rs1169231813 2040 dbSNP
rs1010663338 2041 dbSNP
rs867547644 2043 dbSNP
rs781132634 2045 dbSNP
rs527849274 2048 dbSNP
rs904511370 2063 dbSNP
rs1000104733 2064 dbSNP
rs1031836870 2071 dbSNP
rs1034229172 2072 dbSNP
rs1204508332 2073 dbSNP
rs1275991160 2073 dbSNP
rs1009138936 2074 dbSNP
rs558147315 2079 dbSNP
rs958535385 2084 dbSNP
rs1229655213 2094 dbSNP
rs1355725384 2099 dbSNP
rs1458674582 2099 dbSNP
rs1292408423 2100 dbSNP
rs571750715 2103 dbSNP
rs1158346026 2104 dbSNP
rs1024488261 2105 dbSNP
rs1019377018 2107 dbSNP
rs1441434611 2112 dbSNP
rs951140169 2114 dbSNP
rs1167025229 2121 dbSNP
rs1383503715 2132 dbSNP
rs1402925290 2133 dbSNP
rs61739557 2135 dbSNP
rs1473769582 2141 dbSNP
rs537151423 2150 dbSNP
rs1027708954 2151 dbSNP
rs1479973230 2164 dbSNP
rs1230631631 2165 dbSNP
rs962362752 2176 dbSNP
rs1335005926 2177 dbSNP
rs555897343 2184 dbSNP
rs1413191384 2186 dbSNP
rs973689038 2193 dbSNP
rs575821186 2194 dbSNP
rs747672597 2195 dbSNP
rs1330907030 2203 dbSNP
rs907685998 2204 dbSNP
rs939276595 2205 dbSNP
rs61745632 2216 dbSNP
rs1441752609 2217 dbSNP
rs916249737 2218 dbSNP
rs1348505921 2221 dbSNP
rs1051908223 2222 dbSNP
rs1413135998 2233 dbSNP
rs773060112 2237 dbSNP
rs1417813863 2247 dbSNP
rs1286141034 2248 dbSNP
rs1192375009 2253 dbSNP
rs1427876377 2253 dbSNP
rs911979725 2258 dbSNP
rs1208288702 2259 dbSNP
rs554295622 2281 dbSNP
rs772530880 2282 dbSNP
rs935077715 2289 dbSNP
rs1181598595 2293 dbSNP
rs1238065980 2300 dbSNP
rs775748878 2301 dbSNP
rs1303302069 2303 dbSNP
rs75004743 2304 dbSNP
rs1159728357 2305 dbSNP
rs891935233 2309 dbSNP
rs1385990144 2310 dbSNP
rs1374939243 2311 dbSNP
rs572340965 2312 dbSNP
rs8110359 2316 dbSNP
rs1403243726 2319 dbSNP
rs1454257123 2327 dbSNP
rs1019157146 2330 dbSNP
rs1191236604 2332 dbSNP
rs1391011186 2333 dbSNP
rs1271248148 2335 dbSNP
rs74172655 2336 dbSNP
rs1014061550 2340 dbSNP
rs564094952 2341 dbSNP
rs1211480249 2344 dbSNP
rs1027636991 2347 dbSNP
rs951275713 2349 dbSNP
rs1003999057 2350 dbSNP
rs1327189904 2352 dbSNP
rs1242246255 2353 dbSNP
rs1017091699 2355 dbSNP
rs1380814446 2356 dbSNP
rs1381763917 2359 dbSNP
rs983524041 2365 dbSNP
rs1434597750 2369 dbSNP
rs1171134972 2371 dbSNP
rs45448392 2371 dbSNP
rs975039667 2373 dbSNP
rs867577088 2375 dbSNP
rs1463057019 2380 dbSNP
rs543552170 2383 dbSNP
rs1191986760 2384 dbSNP
rs960530801 2386 dbSNP
rs1257953499 2390 dbSNP
rs750692245 2391 dbSNP
rs953585036 2396 dbSNP
rs1485267674 2401 dbSNP
rs1278122881 2403 dbSNP
rs988118528 2405 dbSNP
rs1207284623 2420 dbSNP
rs1340153660 2430 dbSNP
rs1250875070 2431 dbSNP
rs1208174602 2434 dbSNP
rs912100583 2443 dbSNP
rs1323762270 2446 dbSNP
rs992492660 2447 dbSNP
rs563414299 2449 dbSNP
rs916530590 2450 dbSNP
rs1310383372 2470 dbSNP
rs946205670 2475 dbSNP
rs1392520616 2480 dbSNP
rs1483393972 2485 dbSNP
rs529462861 2491 dbSNP
rs1194830976 2499 dbSNP
rs1396564289 2504 dbSNP
rs1166833027 2508 dbSNP
rs1460117151 2510 dbSNP
rs1419580497 2512 dbSNP
rs1041810108 2513 dbSNP
rs139503502 2514 dbSNP
rs758513750 2516 dbSNP
rs936017553 2517 dbSNP
rs1438343829 2524 dbSNP
rs5826855 2529 dbSNP
rs1453096301 2530 dbSNP
rs924938311 2535 dbSNP
rs1175649788 2536 dbSNP
rs1055699220 2546 dbSNP
rs935088290 2549 dbSNP
rs894462740 2550 dbSNP
rs149678219 2551 dbSNP
rs1014200870 2556 dbSNP
rs1232974174 2558 dbSNP
rs1333109605 2568 dbSNP
rs1290650900 2569 dbSNP
rs1046052982 2574 dbSNP
rs1389195011 2580 dbSNP
rs1396113536 2581 dbSNP
rs1326168160 2584 dbSNP
rs886984463 2585 dbSNP
rs1052167412 2586 dbSNP
rs913394972 2606 dbSNP
rs1004412948 2608 dbSNP
rs1363168361 2612 dbSNP
rs1040557459 2614 dbSNP
rs1016689504 2620 dbSNP
rs898217008 2626 dbSNP
rs566206835 2637 dbSNP
rs528801862 2638 dbSNP
rs996415985 2652 dbSNP
rs1049102465 2654 dbSNP
rs766579675 2655 dbSNP
rs1231949216 2656 dbSNP
rs1302801280 2663 dbSNP
rs1312208947 2664 dbSNP
rs551439379 2665 dbSNP
rs1028013798 2668 dbSNP
rs955019458 2685 dbSNP
rs987782850 2686 dbSNP
rs1319970715 2691 dbSNP
rs1401059608 2708 dbSNP
rs1319548891 2709 dbSNP
rs1156710802 2710 dbSNP
rs1455569938 2711 dbSNP
rs776723419 2714 dbSNP
rs910566168 2715 dbSNP
rs1013459365 2716 dbSNP
rs1467551338 2717 dbSNP
rs1023406614 2719 dbSNP
rs1019576620 2724 dbSNP
rs3088098 2725 dbSNP
rs977964484 2726 dbSNP
rs979289933 2729 dbSNP
rs926059298 2738 dbSNP
rs936110860 2739 dbSNP
rs956363004 2741 dbSNP
rs1232942276 2744 dbSNP
rs991520442 2747 dbSNP
rs72620520 2749 dbSNP
rs1325616362 2750 dbSNP
rs1315986712 2752 dbSNP
rs1426123792 2757 dbSNP
rs1375997799 2768 dbSNP
rs1173023578 2769 dbSNP
rs943785189 2794 dbSNP
rs950090400 2801 dbSNP
rs187863788 2802 dbSNP
rs932239271 2803 dbSNP
rs1190514510 2805 dbSNP
rs1485769974 2810 dbSNP
rs748087558 2811 dbSNP
rs939881905 2815 dbSNP
rs567447464 2816 dbSNP
rs887782624 2820 dbSNP
rs1038183657 2822 dbSNP
rs755738044 2823 dbSNP
rs368932661 2824 dbSNP
rs534490825 2824 dbSNP
rs1381225558 2829 dbSNP
rs1312198508 2835 dbSNP
rs1292803166 2836 dbSNP
rs1319608513 2837 dbSNP
rs777390460 2838 dbSNP
rs1028076046 2840 dbSNP
rs535275996 2864 dbSNP
rs906509524 2868 dbSNP
rs555554668 2880 dbSNP
rs1167441353 2882 dbSNP
rs1013611951 2888 dbSNP
rs558674383 2890 dbSNP
rs1008276729 2895 dbSNP
rs1481915101 2904 dbSNP
rs1000741583 2913 dbSNP
rs1224441233 2917 dbSNP
rs1204644297 2919 dbSNP
rs1032188291 2924 dbSNP
rs774456066 2925 dbSNP
rs1184909842 2926 dbSNP
rs987866709 2927 dbSNP
rs968012543 2932 dbSNP
rs1226475285 2936 dbSNP
rs1375444648 2939 dbSNP
rs1478287647 2946 dbSNP
rs1298775006 2947 dbSNP
rs977684135 2951 dbSNP
rs1416909056 2953 dbSNP
rs1352880819 2955 dbSNP
rs1328170610 2957 dbSNP
rs1462220001 2967 dbSNP
rs965168851 2970 dbSNP
rs1403322063 2973 dbSNP
rs1158649087 2974 dbSNP
rs1033170047 2976 dbSNP
rs975133084 2978 dbSNP
rs1469153323 2979 dbSNP
rs1235896480 2981 dbSNP
rs193077506 2982 dbSNP
rs1394344861 2987 dbSNP
rs1215159277 2995 dbSNP
rs541324614 3003 dbSNP
rs957526761 3009 dbSNP
rs748768295 3011 dbSNP
rs1219142489 3016 dbSNP
rs558341092 3016 dbSNP
rs991572735 3020 dbSNP
rs1452939137 3021 dbSNP
rs932102071 3022 dbSNP
rs1223218323 3024 dbSNP
rs915955218 3032 dbSNP
rs950087115 3038 dbSNP
rs981818826 3043 dbSNP
rs908472592 3048 dbSNP
rs1400241783 3058 dbSNP
rs940921314 3059 dbSNP
rs1292100383 3062 dbSNP
rs1036393667 3066 dbSNP
rs571282318 3069 dbSNP
rs939954348 3070 dbSNP
rs1346200047 3072 dbSNP
rs896449558 3084 dbSNP
rs9789274 3088 dbSNP
rs1038278858 3096 dbSNP
rs28385470 3099 dbSNP
rs773999022 3104 dbSNP
rs12461453 3105 dbSNP
rs1486724180 3106 dbSNP
rs1214918307 3110 dbSNP
rs890843280 3118 dbSNP
rs1351428472 3131 dbSNP
rs1282514472 3135 dbSNP
rs1235147803 3137 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucuUGGAG----CCGACCCCGCccga 5'
             ||:|:    ||||| ||||    
Target 5' agcACUUUGAGAGGCUGAGGCG---- 3'
2 - 23
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucuuggagCCGACCCCGCCCGa 5'
                  ||||| ||||||| 
Target 5' ----gagaGGCUGAGGCGGGCg 3'
1 - 18
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_152362 | 3UTR | GCCUGUAAUCCCAGCACUUUGAGAGGCUGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001167942 | 3UTR | AGGCUGAGGCGGGCAGAUCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000327473.4 | 3UTR | CAGCACUUUGAGAGGCUGAGGCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000327473.4 | 3UTR | GAGAGGCUGAGGCGGGCGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-4707-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT442514 SYT7 synaptotagmin 7 2 4
MIRT457799 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT466318 THRA thyroid hormone receptor, alpha 2 2
MIRT486129 TRAF3 TNF receptor associated factor 3 2 2
MIRT492341 SEPT8 septin 8 2 2
MIRT495690 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT496928 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT499518 MAFK MAF bZIP transcription factor K 2 2
MIRT501367 REXO1 RNA exonuclease 1 homolog 2 4
MIRT501636 PIAS4 protein inhibitor of activated STAT 4 2 4
MIRT521071 SLC25A16 solute carrier family 25 member 16 2 2
MIRT525700 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 2 2
MIRT532722 DDTL D-dopachrome tautomerase like 2 2
MIRT533137 WWC1 WW and C2 domain containing 1 2 4
MIRT537288 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT570555 PHF21B PHD finger protein 21B 2 2
MIRT573469 MTRNR2L9 MT-RNR2-like 9 2 2
MIRT576750 Tmem127 transmembrane protein 127 2 2
MIRT609342 DAAM2 dishevelled associated activator of morphogenesis 2 2 2
MIRT610638 PIGM phosphatidylinositol glycan anchor biosynthesis class M 2 2
MIRT612591 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT614237 WDR53 WD repeat domain 53 2 4
MIRT622784 PGK1 phosphoglycerate kinase 1 2 2
MIRT628880 MED16 mediator complex subunit 16 2 2
MIRT629550 SPN sialophorin 2 2
MIRT634714 DDX19B DEAD-box helicase 19B 2 2
MIRT634932 GTF2H2C GTF2H2 family member C 2 4
MIRT635341 RBL1 RB transcriptional corepressor like 1 2 2
MIRT637838 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT644311 NFKBID NFKB inhibitor delta 2 2
MIRT649206 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT657262 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT658919 DPY19L4 dpy-19 like 4 2 2
MIRT663608 SEC23B Sec23 homolog B, coat complex II component 2 2
MIRT667425 MFAP2 microfibril associated protein 2 2 2
MIRT667667 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT668144 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT668540 ERGIC1 endoplasmic reticulum-golgi intermediate compartment 1 2 2
MIRT670039 NFRKB nuclear factor related to kappaB binding protein 2 2
MIRT670875 RAB10 RAB10, member RAS oncogene family 2 2
MIRT672694 ZNF677 zinc finger protein 677 2 2
MIRT673107 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT673508 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674244 NUP62 nucleoporin 62 2 4
MIRT676541 IRGQ immunity related GTPase Q 2 2
MIRT676787 CXorf38 chromosome X open reading frame 38 2 4
MIRT677600 PRKX protein kinase, X-linked 2 2
MIRT678607 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678940 MYADM myeloid associated differentiation marker 2 2
MIRT679104 CD99 CD99 molecule (Xg blood group) 2 2
MIRT679196 WNT2B Wnt family member 2B 2 2
MIRT679325 ZMYM4 zinc finger MYM-type containing 4 2 2
MIRT679634 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT679819 TMEM106B transmembrane protein 106B 2 2
MIRT679898 FBXO48 F-box protein 48 2 2
MIRT680579 ZNF784 zinc finger protein 784 2 2
MIRT680600 SZT2 SZT2, KICSTOR complex subunit 2 2
MIRT682991 RNF40 ring finger protein 40 2 4
MIRT683483 ZNF7 zinc finger protein 7 2 2
MIRT683681 MICA MHC class I polypeptide-related sequence A 2 2
MIRT684122 CEP104 centrosomal protein 104 2 2
MIRT684774 MYO1F myosin IF 2 2
MIRT685698 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT686471 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT687940 HMGB1 high mobility group box 1 2 2
MIRT688627 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT689110 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT690063 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT691067 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691317 KIAA1841 KIAA1841 2 2
MIRT692778 SYNPO2L synaptopodin 2 like 2 2
MIRT694087 KIAA0930 KIAA0930 2 2
MIRT696148 WDR59 WD repeat domain 59 2 2
MIRT696176 GNB5 G protein subunit beta 5 2 2
MIRT696434 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT697974 TSPAN6 tetraspanin 6 2 2
MIRT698917 SPEM1 spermatid maturation 1 2 2
MIRT699312 SLC35F5 solute carrier family 35 member F5 2 4
MIRT700500 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 2
MIRT700557 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT701817 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702045 METTL21A methyltransferase like 21A 2 2
MIRT702215 LPCAT1 lysophosphatidylcholine acyltransferase 1 2 2
MIRT702337 KLHL7 kelch like family member 7 2 2
MIRT704139 DNAL1 dynein axonemal light chain 1 2 2
MIRT704189 LDHD lactate dehydrogenase D 2 2
MIRT705344 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706097 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT709068 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT717579 VTA1 vesicle trafficking 1 2 2
MIRT722440 ZBTB7B zinc finger and BTB domain containing 7B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4707 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4707 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4707 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4707 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4707-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4707-3p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4707-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4707-3p Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-4707-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4707-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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