pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC11A2   
Synonyms AHMIO1, DCT1, DMT1, NRAMP2
Description solute carrier family 11 member 2
Transcript NM_000617   
Other Transcripts NM_001174125 , NM_001174126 , NM_001174127 , NM_001174128 , NM_001174129 , NM_001174130   
Expression
Putative miRNA Targets on SLC11A2
3'UTR of SLC11A2
(miRNA target sites are highlighted)
>SLC11A2|NM_000617|3'UTR
   1 CACTGGATTAGTCTGTCTTCTGCAGGTAGCCATCAGAGCCAGTGTGTTTCTATGGTTTACTGTGTGAACATAGCCAAAAG
  81 TATGTGCCGTTGCACAGACTGTGTTTATGACTCAACCGTTGGTTGGAAAAGACTTTGTTTCATGTGTATTTGAAAGATGG
 161 AATTATTTTTTCCTTCCTGACCTAACCTTAGAACTGGATTAGGGTGGGATCTTTGAAAAGCTGACATTTGCTGCTATCAT
 241 TCCAACACTAAATTCTTAAGTAGTTGCCCAAGGGCCAGCTCAGTTTATCCTTCGGAGAGACAAGGATATGCATGATTCTT
 321 AACCAGGCTATATGTTAAAAAAAAATTGGAAAATGCAATACATTTTTTATTATACAAACTACAGAATGAGTATGCAAGTT
 401 TTATTTATCAAAATGTAATGGATTTTTAAAGGCTGAGAAATTTTCCTTATACCTACCTTTTCAGTTATTTTAATTATACC
 481 AAATTATCAACTAGAATAGCTTCATCCATATGAAATATAAAATGAAGAGACACCTAGCTCTATCAGGCTTAGGATTCTTT
 561 GAACTTATTTCCACTTTAATTTCTCAGTGGAAGTTAAGAGGGGTGAGAAAACAAAGAAGGGGAAAAACTGACAACTAACA
 641 AAACCAGCACCACATCGCTAGGTGGTGCTTACTAATTACCTTCTCAGGATTTTCCTCAGATTGAAAAGCTTATGAGGATT
 721 TCTTGGGAGTCTTAATAACCTGCCTGTTAGTACAGAGCTTTCCTGATGATATTTACTCTTGAGCACATGTGGTTGTAAAA
 801 CCTTAACTTTCTTTCTCCAGGAGGGTGGTGATAGAAACAGATGGTAGTATTTATGAACTGATGTTCTCGTGAAATGTTGA
 881 GGGTGGGGAGAAAAGACTTTAAGGGAGGAGAGCCATCTATTTTGTTCCTAAAGCCACCTCTCAGCAGAATCGTCATGTTT
 961 TTCTGATGCACCGCTCTGCTTCATGCCCAAGATGACTTGCGAGGCAATCTCAGGAGCTGTGGACTTAACCGTTGCAAAGC
1041 ACACTGTCTTTCTCAGCGTTCTCTGCAAGTCAGTAGGTGTTAGTATGGTTGCAAAGTTCACTGTCTCAGCAAAGTTGAAC
1121 TGGGCTACCTCTCTACAGCTGTTTCCTCAGAGGGAAAAATCTTGAGACCAGATGGTGGAGCTCTGGAGTCAGAGGAAATG
1201 GGTGTCTTCAGCACAAAGCTGCTGCTTTTACTTCAGCCACTTCTGACATTTTTACATACCGAGCCTGAGATTGTGTGATT
1281 ATCTCAAATCAAATCACTTTGATGGAGATAAATAATCAAAACTGTTTTATAGTCATTGATTTGGTGAGAACAGTAATGGA
1361 AAATGGTGTTGAAGGACTTCTCATTTTTGGAGCTTTCCTTCCAGAGTCCTGGCTGATTGGTGTTCGCTGTTCATCTGAGC
1441 CCCCAAAAGCATTATTACTGATACTTGCACACAGTCAAAAGCGCAGACTGGATGGATGGTCTTTTATAAGGCATTTAAGG
1521 GTACACTACTGTGTTTCACTGACCATACATTTTTCTTAGCCCCTCAAGTAATATAGCACAGAGTTATGAATGACAATTCC
1601 CCTAACCATTCCTCTTCATATCTGCCTCTTCCCCTTACCATCGTAATTCTCCAAACTGGTCATAAAGGCACTCTGTGAAG
1681 ATATTGGGGACTGACATCTTAAGCTCTCACCTGGCTGCAGTAGGAAAGGCCAAACTGACGACAAAAAAAAAATTCTTTAT
1761 AAAGATGATATGGTAACATGTATCTTTGCCCTGGGTCTGGGTGGGTCCAGTCAGTCTCAGATTTACAAGCATTTAGGAGC
1841 CTAGGTAAAAGCTGCTAGTATTCTTTTAAAAGTTATATTTATGACTTGCAATGATAGAAAACTCCTTCCAATTAAATGGC
1921 ATTTTATAATATTATGTGTGTACTTCACAGTGTTAAAAATACCCTCATACGTTATTGCATTTGATCTTCACAGAAAGTGC
2001 ATTTTAACCAGTACTCTGGGTGCAATAAATAATATGTAGAAATTTAAGTCCTCCAATTCCAGCATATCCAGTGAGTTTTG
2081 ACAGTGTGTTTATGTGGAATGTTTAAGGATATACAATTGTACTTTATATAAATTGGTTCTTGTTCTTCTTAAATGTGACA
2161 TGAAATAATTGTGCTGCTACATTATACTGGAAATTAACAGGGGAAAAGGGAAGAGCTCTTGGCTCCCTTGAGGTTCTGCT
2241 AGTGGTGTTAGGAGTGGTTACAACTGAGCTTTTAGTAACCATTTAACCGTATGTAAACTTGGTTTCTAATTAAAAAAAAA
2321 TTTCTTTTTCCAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgGUCGGUU--GAGUG----UCACGUcu 5'
             || :::|  :||||    ||||||  
Target 5' ttgCATTTGATCTTCACAGAAAGTGCAtt 3'
1975 - 2003 132.00 -8.46
2
miRNA  3' ucgGUCGGUUGAGUGUCACGUCu 5'
             |||:|||   | || |||| 
Target 5' acaCAGTCAA---A-AGCGCAGa 3'
1469 - 1487 124.00 -16.40
3
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            || ||| ::|   ||| ||| 
Target 5' aaCCTGCCTGTT---AGTACAGa 3'
737 - 756 122.00 -14.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
309303 11 ClinVar
309302 32 ClinVar
309301 153 ClinVar
883596 295 ClinVar
309300 358 ClinVar
309299 390 ClinVar
309298 415 ClinVar
309297 420 ClinVar
309296 546 ClinVar
882810 716 ClinVar
882809 789 ClinVar
309295 872 ClinVar
309294 970 ClinVar
309293 985 ClinVar
309292 986 ClinVar
309291 1007 ClinVar
309290 1031 ClinVar
881184 1057 ClinVar
881183 1058 ClinVar
309289 1215 ClinVar
309288 1261 ClinVar
309287 1273 ClinVar
881182 1360 ClinVar
881181 1367 ClinVar
881180 1444 ClinVar
309286 1467 ClinVar
309285 1486 ClinVar
309284 1559 ClinVar
309283 1599 ClinVar
882760 1615 ClinVar
882759 1739 ClinVar
309282 1753 ClinVar
882758 1795 ClinVar
309281 1876 ClinVar
309280 1902 ClinVar
309279 1949 ClinVar
309278 2085 ClinVar
309277 2289 ClinVar
309276 2321 ClinVar
881136 2332 ClinVar
COSN24705496 1 COSMIC
COSN30510633 5 COSMIC
COSN30517506 20 COSMIC
COSN30489650 88 COSMIC
COSN5945790 89 COSMIC
COSN24014951 289 COSMIC
COSN1575836 460 COSMIC
COSN28547775 544 COSMIC
COSN17181744 709 COSMIC
COSN30423131 731 COSMIC
COSN20986313 817 COSMIC
COSN29277676 1030 COSMIC
COSN22278474 1209 COSMIC
COSN7373315 1285 COSMIC
COSN29540211 1742 COSMIC
COSN20109575 1743 COSMIC
COSN15107875 2289 COSMIC
COSN5945789 2302 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs779127497 1 dbSNP
rs755553232 3 dbSNP
rs1370565577 4 dbSNP
rs954282535 5 dbSNP
rs749794949 7 dbSNP
rs903163485 10 dbSNP
rs201382454 11 dbSNP
rs1432365644 13 dbSNP
rs1365212060 21 dbSNP
rs1321831576 22 dbSNP
rs756262905 23 dbSNP
rs1452323992 25 dbSNP
rs750524130 26 dbSNP
rs886049565 32 dbSNP
rs979394886 34 dbSNP
rs767908116 38 dbSNP
rs1419154796 39 dbSNP
rs1361593841 41 dbSNP
rs545806943 52 dbSNP
rs1419140880 66 dbSNP
rs763634560 69 dbSNP
rs1266669681 79 dbSNP
rs1476441670 80 dbSNP
rs1394457676 81 dbSNP
rs781190264 88 dbSNP
rs1182949352 89 dbSNP
rs764971858 95 dbSNP
rs1244870071 97 dbSNP
rs1210627357 103 dbSNP
rs1306704059 105 dbSNP
rs371736382 115 dbSNP
rs776447248 117 dbSNP
rs766238984 118 dbSNP
rs760246899 128 dbSNP
rs1326607173 131 dbSNP
rs188179273 136 dbSNP
rs771763859 144 dbSNP
rs1305103339 147 dbSNP
rs747728769 148 dbSNP
rs146016854 153 dbSNP
rs1327133115 155 dbSNP
rs367902302 158 dbSNP
rs1035488223 161 dbSNP
rs41510444 164 dbSNP
rs1467084790 165 dbSNP
rs529830430 167 dbSNP
rs1163064457 180 dbSNP
rs749596220 181 dbSNP
rs927684512 189 dbSNP
rs981881706 194 dbSNP
rs961432580 201 dbSNP
rs1048369641 202 dbSNP
rs1480196348 203 dbSNP
rs1371603195 211 dbSNP
rs1477535289 221 dbSNP
rs1230921676 222 dbSNP
rs542538964 223 dbSNP
rs984195678 224 dbSNP
rs1290565664 229 dbSNP
rs1219702138 236 dbSNP
rs1460359516 244 dbSNP
rs756673561 249 dbSNP
rs147543992 250 dbSNP
rs1229346397 260 dbSNP
rs1373097398 264 dbSNP
rs896802347 267 dbSNP
rs1412040711 271 dbSNP
rs1371470513 274 dbSNP
rs143304230 276 dbSNP
rs1302778651 280 dbSNP
rs1422830441 289 dbSNP
rs1351635152 293 dbSNP
rs1165433382 294 dbSNP
rs745991716 296 dbSNP
rs1405668715 303 dbSNP
rs952658417 308 dbSNP
rs781388985 309 dbSNP
rs1486710538 310 dbSNP
rs1472793134 318 dbSNP
rs1267737818 323 dbSNP
rs1219724060 328 dbSNP
rs943769309 330 dbSNP
rs1490703003 332 dbSNP
rs1265477332 333 dbSNP
rs912303340 335 dbSNP
rs1214424382 336 dbSNP
rs1316894445 337 dbSNP
rs185716790 339 dbSNP
rs1188687683 346 dbSNP
rs745644051 346 dbSNP
rs932848760 347 dbSNP
rs1164668537 355 dbSNP
rs1364941701 356 dbSNP
rs2285230 358 dbSNP
rs996624195 362 dbSNP
rs575183627 365 dbSNP
rs1415039147 370 dbSNP
rs556916905 371 dbSNP
rs1403286064 374 dbSNP
rs1019426878 378 dbSNP
rs224446 390 dbSNP
rs142574280 392 dbSNP
rs1453124934 393 dbSNP
rs754734883 409 dbSNP
rs1236542458 413 dbSNP
rs765348165 415 dbSNP
rs886049564 420 dbSNP
rs1428277887 421 dbSNP
rs1196878381 431 dbSNP
rs1434587117 432 dbSNP
rs1267586380 433 dbSNP
rs1185488827 437 dbSNP
rs1484606889 440 dbSNP
rs779038580 441 dbSNP
rs759580400 442 dbSNP
rs1211066738 446 dbSNP
rs1056086048 447 dbSNP
rs1262950331 449 dbSNP
rs1347865063 450 dbSNP
rs1222039807 453 dbSNP
rs1284468966 463 dbSNP
rs1034212707 476 dbSNP
rs1302235618 477 dbSNP
rs574989172 478 dbSNP
rs1421408215 482 dbSNP
rs1359882946 483 dbSNP
rs149602502 486 dbSNP
rs1435673239 500 dbSNP
rs1405227484 501 dbSNP
rs1174060831 504 dbSNP
rs1380109228 508 dbSNP
rs1467378043 517 dbSNP
rs1377911222 533 dbSNP
rs1319938403 536 dbSNP
rs938812945 540 dbSNP
rs193030246 546 dbSNP
rs1373298638 554 dbSNP
rs1426235786 558 dbSNP
rs766363673 559 dbSNP
rs1036540629 564 dbSNP
rs766464377 568 dbSNP
rs1243054608 571 dbSNP
rs1308502648 582 dbSNP
rs1173551373 585 dbSNP
rs760586326 593 dbSNP
rs1484403147 596 dbSNP
rs1026837943 598 dbSNP
rs772752245 600 dbSNP
rs1282739125 601 dbSNP
rs761116058 603 dbSNP
rs1169861111 613 dbSNP
rs1251983717 615 dbSNP
rs766970834 618 dbSNP
rs983796975 621 dbSNP
rs952514604 627 dbSNP
rs921163766 634 dbSNP
rs1238153516 635 dbSNP
rs1454969546 637 dbSNP
rs1229205195 653 dbSNP
rs572570102 654 dbSNP
rs552634630 656 dbSNP
rs535029460 657 dbSNP
rs1402577361 662 dbSNP
rs1297276070 672 dbSNP
rs1170485999 676 dbSNP
rs1460118711 678 dbSNP
rs1355743055 686 dbSNP
rs943741572 698 dbSNP
rs1019370012 713 dbSNP
rs571129669 716 dbSNP
rs1168738323 719 dbSNP
rs1443471656 725 dbSNP
rs1049972973 727 dbSNP
rs1442749138 738 dbSNP
rs1185975315 740 dbSNP
rs1300995756 742 dbSNP
rs1365690673 749 dbSNP
rs1425948375 750 dbSNP
rs967484274 753 dbSNP
rs552810613 771 dbSNP
rs932805907 772 dbSNP
rs768346443 776 dbSNP
rs1195558468 778 dbSNP
rs771164993 781 dbSNP
rs772485740 784 dbSNP
rs1277023017 786 dbSNP
rs79206015 789 dbSNP
rs1043878932 790 dbSNP
rs564071030 791 dbSNP
rs1246843113 792 dbSNP
rs1340879882 793 dbSNP
rs1055821766 796 dbSNP
rs1389443752 804 dbSNP
rs1251556700 808 dbSNP
rs1372091298 811 dbSNP
rs1308186229 815 dbSNP
rs914193414 816 dbSNP
rs1423467361 818 dbSNP
rs1003093319 819 dbSNP
rs376188378 824 dbSNP
rs907456272 828 dbSNP
rs1186724025 840 dbSNP
rs1363110910 843 dbSNP
rs1426217147 846 dbSNP
rs757182678 849 dbSNP
rs775972186 850 dbSNP
rs1369531940 860 dbSNP
rs1181616559 862 dbSNP
rs1395049104 868 dbSNP
rs992162970 868 dbSNP
rs111817978 869 dbSNP
rs73297974 872 dbSNP
rs537304184 877 dbSNP
rs1490214743 882 dbSNP
rs926708595 883 dbSNP
rs940890290 885 dbSNP
rs952121771 886 dbSNP
rs746407483 909 dbSNP
rs886850357 910 dbSNP
rs1454175641 919 dbSNP
rs1260067465 924 dbSNP
rs1026785314 928 dbSNP
rs1330644668 929 dbSNP
rs1352034830 934 dbSNP
rs1288611430 935 dbSNP
rs995342892 937 dbSNP
rs1328963675 939 dbSNP
rs1325007280 941 dbSNP
rs781745738 942 dbSNP
rs961282994 951 dbSNP
rs182125518 952 dbSNP
rs1158430079 955 dbSNP
rs1048644048 966 dbSNP
rs1414589608 968 dbSNP
rs886049563 970 dbSNP
rs1160228377 971 dbSNP
rs774980110 972 dbSNP
rs1015963346 973 dbSNP
rs1201172945 979 dbSNP
rs920903497 980 dbSNP
rs886049562 985 dbSNP
rs886049561 986 dbSNP
rs537388261 989 dbSNP
rs1384909507 990 dbSNP
rs747044356 1000 dbSNP
rs150426997 1001 dbSNP
rs1049425900 1002 dbSNP
rs1222650419 1005 dbSNP
rs886049560 1007 dbSNP
rs758635229 1010 dbSNP
rs1276246528 1011 dbSNP
rs1436579362 1015 dbSNP
rs1325294312 1020 dbSNP
rs753676302 1021 dbSNP
rs1356147994 1024 dbSNP
rs1433482436 1030 dbSNP
rs150909 1031 dbSNP
rs903612741 1038 dbSNP
rs779795966 1041 dbSNP
rs755867482 1042 dbSNP
rs1174471958 1043 dbSNP
rs912517049 1044 dbSNP
rs750386714 1045 dbSNP
rs1257846539 1048 dbSNP
rs190239649 1054 dbSNP
rs767436028 1057 dbSNP
rs41398049 1058 dbSNP
rs1470478994 1064 dbSNP
rs114477310 1072 dbSNP
rs77629814 1076 dbSNP
rs72561484 1080 dbSNP
rs990615340 1083 dbSNP
rs1202874826 1088 dbSNP
rs763696315 1090 dbSNP
rs1405483209 1093 dbSNP
rs939637159 1094 dbSNP
rs1219397046 1095 dbSNP
rs926587901 1099 dbSNP
rs1376368035 1107 dbSNP
rs1294824620 1109 dbSNP
rs1229949969 1111 dbSNP
rs756275201 1124 dbSNP
rs1321729546 1129 dbSNP
rs1447776505 1131 dbSNP
rs1443597062 1132 dbSNP
rs1357732484 1133 dbSNP
rs980776420 1134 dbSNP
rs1439937706 1136 dbSNP
rs775291249 1149 dbSNP
rs866778898 1151 dbSNP
rs1239951183 1162 dbSNP
rs1329440854 1170 dbSNP
rs1415297199 1172 dbSNP
rs958790909 1175 dbSNP
rs1370159689 1178 dbSNP
rs1034312003 1180 dbSNP
rs1002914988 1186 dbSNP
rs1166854701 1189 dbSNP
rs1404593733 1201 dbSNP
rs762674290 1202 dbSNP
rs920717648 1204 dbSNP
rs973895202 1206 dbSNP
rs769260493 1212 dbSNP
rs1015493907 1214 dbSNP
rs17125172 1215 dbSNP
rs745529197 1238 dbSNP
rs1436916619 1249 dbSNP
rs887921862 1256 dbSNP
rs1272030786 1260 dbSNP
rs60725885 1261 dbSNP
rs777290057 1264 dbSNP
rs1467797990 1267 dbSNP
rs11169654 1273 dbSNP
rs899592573 1275 dbSNP
rs1401542006 1287 dbSNP
rs1377581254 1288 dbSNP
rs996505421 1292 dbSNP
rs1398821913 1293 dbSNP
rs186973090 1297 dbSNP
rs747124260 1298 dbSNP
rs777876037 1299 dbSNP
rs1306339197 1300 dbSNP
rs772230183 1305 dbSNP
rs1043482328 1312 dbSNP
rs1273931303 1316 dbSNP
rs1371191505 1316 dbSNP
rs1339461668 1318 dbSNP
rs1197106807 1319 dbSNP
rs34220901 1322 dbSNP
rs1256004976 1329 dbSNP
rs1457274917 1330 dbSNP
rs1164037951 1332 dbSNP
rs748388993 1339 dbSNP
rs12480 1343 dbSNP
rs138011955 1344 dbSNP
rs1182297235 1354 dbSNP
rs573581505 1360 dbSNP
rs1249176383 1365 dbSNP
rs1235162595 1367 dbSNP
rs1196991255 1370 dbSNP
rs1183828742 1376 dbSNP
rs142166519 1381 dbSNP
rs1475778564 1382 dbSNP
rs912465753 1384 dbSNP
rs1056647247 1397 dbSNP
rs1218714195 1398 dbSNP
rs1398667309 1399 dbSNP
rs1320499725 1401 dbSNP
rs1465581386 1402 dbSNP
rs939564318 1404 dbSNP
rs1397114191 1417 dbSNP
rs1229254422 1419 dbSNP
rs1350193753 1425 dbSNP
rs977765058 1426 dbSNP
rs1289988644 1435 dbSNP
rs1326664936 1435 dbSNP
rs946003076 1444 dbSNP
rs1359628714 1459 dbSNP
rs1317186135 1460 dbSNP
rs920666715 1461 dbSNP
rs1293068694 1462 dbSNP
rs972167048 1463 dbSNP
rs1434388285 1464 dbSNP
rs561463670 1467 dbSNP
rs1280115135 1468 dbSNP
rs1195873415 1471 dbSNP
rs940806544 1478 dbSNP
rs746988310 1482 dbSNP
rs757190615 1483 dbSNP
rs1409436768 1485 dbSNP
rs116731209 1486 dbSNP
rs1472741641 1491 dbSNP
rs1163060001 1493 dbSNP
rs1385168696 1497 dbSNP
rs1401500940 1498 dbSNP
rs955466891 1502 dbSNP
rs1028228620 1504 dbSNP
rs1189018488 1505 dbSNP
rs1489136390 1510 dbSNP
rs1248979459 1515 dbSNP
rs1222889526 1517 dbSNP
rs1328945061 1521 dbSNP
rs1266671737 1523 dbSNP
rs1312526294 1525 dbSNP
rs1366487834 1527 dbSNP
rs1230601239 1528 dbSNP
rs990002369 1531 dbSNP
rs1330149628 1533 dbSNP
rs1243722591 1540 dbSNP
rs1261116613 1544 dbSNP
rs975035056 1545 dbSNP
rs763684336 1547 dbSNP
rs1369752486 1548 dbSNP
rs1294071430 1555 dbSNP
rs1434329496 1556 dbSNP
rs777649881 1559 dbSNP
rs1178309174 1562 dbSNP
rs1322363363 1563 dbSNP
rs762513303 1573 dbSNP
rs542347738 1574 dbSNP
rs1173448058 1582 dbSNP
rs144968585 1583 dbSNP
rs1258805738 1587 dbSNP
rs760035407 1591 dbSNP
rs1187354119 1592 dbSNP
rs1464883782 1596 dbSNP
rs886049559 1599 dbSNP
rs557225035 1615 dbSNP
rs1164473451 1617 dbSNP
rs1486361506 1624 dbSNP
rs537671498 1625 dbSNP
rs1255647819 1633 dbSNP
rs1231278482 1634 dbSNP
rs1421953248 1635 dbSNP
rs1314130315 1638 dbSNP
rs1156440998 1640 dbSNP
rs578240585 1642 dbSNP
rs761220255 1643 dbSNP
rs1213184195 1645 dbSNP
rs971412714 1647 dbSNP
rs1284299360 1650 dbSNP
rs1363027768 1651 dbSNP
rs755397829 1658 dbSNP
rs1299645587 1662 dbSNP
rs1321259443 1670 dbSNP
rs773539780 1671 dbSNP
rs755074642 1681 dbSNP
rs772166626 1683 dbSNP
rs191887833 1684 dbSNP
rs1359360311 1688 dbSNP
rs1167482223 1691 dbSNP
rs1005518516 1693 dbSNP
rs1405398595 1695 dbSNP
rs1388869024 1696 dbSNP
rs1191000852 1701 dbSNP
rs1429510431 1702 dbSNP
rs186583435 1706 dbSNP
rs1028196487 1714 dbSNP
rs1428836172 1718 dbSNP
rs1353280800 1720 dbSNP
rs1045371340 1721 dbSNP
rs748156013 1728 dbSNP
rs1281300098 1736 dbSNP
rs1204527545 1737 dbSNP
rs766628921 1739 dbSNP
rs1276715869 1740 dbSNP
rs751992159 1741 dbSNP
rs1229004333 1742 dbSNP
rs899143415 1745 dbSNP
rs1177160892 1747 dbSNP
rs1379241840 1748 dbSNP
rs1036379403 1753 dbSNP
rs1356900378 1753 dbSNP
rs755515112 1753 dbSNP
rs763680321 1753 dbSNP
rs1310375877 1755 dbSNP
rs1298675999 1758 dbSNP
rs1397552284 1763 dbSNP
rs1379530493 1767 dbSNP
rs1427888009 1769 dbSNP
rs1306959601 1776 dbSNP
rs59280115 1778 dbSNP
rs796672052 1780 dbSNP
rs750648046 1795 dbSNP
rs1261410748 1797 dbSNP
rs921160441 1799 dbSNP
rs375705399 1803 dbSNP
rs1462986488 1809 dbSNP
rs1368383865 1816 dbSNP
rs1185950634 1826 dbSNP
rs1425855603 1829 dbSNP
rs975276787 1836 dbSNP
rs1258502908 1838 dbSNP
rs1181669166 1839 dbSNP
rs1482132675 1840 dbSNP
rs1276911768 1843 dbSNP
rs1196432616 1850 dbSNP
rs1459489486 1854 dbSNP
rs1355628978 1864 dbSNP
rs1202547206 1866 dbSNP
rs1263609693 1867 dbSNP
rs967949766 1874 dbSNP
rs149411 1876 dbSNP
rs1335176445 1877 dbSNP
rs756970075 1878 dbSNP
rs1287353469 1890 dbSNP
rs956658272 1891 dbSNP
rs1351922005 1893 dbSNP
rs1308169090 1897 dbSNP
rs1385727145 1898 dbSNP
rs1390648200 1900 dbSNP
rs886049558 1902 dbSNP
rs1459788155 1909 dbSNP
rs528056084 1936 dbSNP
rs72561485 1949 dbSNP
rs1295497047 1950 dbSNP
rs1438421757 1950 dbSNP
rs377220960 1953 dbSNP
rs144174412 1959 dbSNP
rs1278938576 1960 dbSNP
rs1320569932 1960 dbSNP
rs1254231815 1962 dbSNP
rs777505507 1967 dbSNP
rs1023830008 1970 dbSNP
rs563773129 1971 dbSNP
rs1211517744 1985 dbSNP
rs1468831526 1986 dbSNP
rs945920509 1992 dbSNP
rs899426163 1993 dbSNP
rs1267314890 1996 dbSNP
rs1226329247 1997 dbSNP
rs914533926 1998 dbSNP
rs1330851587 2013 dbSNP
rs1279701361 2036 dbSNP
rs372821814 2038 dbSNP
rs530604780 2044 dbSNP
rs775017037 2051 dbSNP
rs1322181102 2053 dbSNP
rs1389076740 2056 dbSNP
rs764636192 2058 dbSNP
rs1004916799 2063 dbSNP
rs890522494 2070 dbSNP
rs1455972390 2078 dbSNP
rs1414476724 2079 dbSNP
rs981499182 2082 dbSNP
rs886049557 2085 dbSNP
rs971482919 2085 dbSNP
rs1418566593 2088 dbSNP
rs1477754971 2092 dbSNP
rs1051879616 2107 dbSNP
rs1375962346 2108 dbSNP
rs907831818 2111 dbSNP
rs983471305 2112 dbSNP
rs1201057442 2114 dbSNP
rs1454699218 2115 dbSNP
rs184114633 2117 dbSNP
rs1206591802 2119 dbSNP
rs1299072635 2119 dbSNP
rs1278051631 2125 dbSNP
rs1357690594 2128 dbSNP
rs1466041660 2130 dbSNP
rs1284546513 2136 dbSNP
rs1230339946 2137 dbSNP
rs1372870696 2142 dbSNP
rs1321539729 2146 dbSNP
rs1199486492 2147 dbSNP
rs551258639 2148 dbSNP
rs1039519772 2151 dbSNP
rs762702736 2151 dbSNP
rs921067168 2151 dbSNP
rs141880064 2153 dbSNP
rs1027942440 2159 dbSNP
rs1182560890 2162 dbSNP
rs1372449229 2163 dbSNP
rs1297430797 2171 dbSNP
rs1433371177 2174 dbSNP
rs765049101 2180 dbSNP
rs1319269559 2182 dbSNP
rs1414164826 2186 dbSNP
rs1400313899 2194 dbSNP
rs1174454942 2201 dbSNP
rs1381033514 2206 dbSNP
rs762552222 2210 dbSNP
rs1244396830 2225 dbSNP
rs915198738 2230 dbSNP
rs559045140 2231 dbSNP
rs964873556 2232 dbSNP
rs956428196 2238 dbSNP
rs1480232566 2247 dbSNP
rs1249420140 2256 dbSNP
rs1341551680 2258 dbSNP
rs542609450 2261 dbSNP
rs1282991574 2267 dbSNP
rs1186540396 2269 dbSNP
rs1019089908 2270 dbSNP
rs1241408437 2271 dbSNP
rs1287640491 2273 dbSNP
rs1351076255 2279 dbSNP
rs1393583245 2280 dbSNP
rs1007903841 2288 dbSNP
rs867212578 2289 dbSNP
rs969141095 2293 dbSNP
rs573624530 2295 dbSNP
rs1207909695 2306 dbSNP
rs754201482 2312 dbSNP
rs1041774078 2319 dbSNP
rs1009938138 2320 dbSNP
rs1382350564 2321 dbSNP
rs141968385 2321 dbSNP
rs763361132 2321 dbSNP
rs1440396355 2322 dbSNP
rs893029060 2324 dbSNP
rs1054395639 2325 dbSNP
rs563410514 2326 dbSNP
rs575495762 2332 dbSNP
rs377068307 2333 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084045. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep3 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucGGUUGAGUGUCACGUcu 5'
                |||:  :: ||||||  
Target 5' uguugcCCAGGCUGGAGUGCA-- 3'
17 - 37
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_001174126 | 3UTR | GGGUCUUGCUCUGUUGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001174127 | 3UTR | GACAGGGUCUUGCUCUGUUGCCCAGGCUGGAGUGCAGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084045
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep3
Location of target site ENST00000262051.7 | 3UTR | AGACAGGGUCUUGCUCUGUUGCCCAGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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